Jaak Vilo WWW-homepage

Jaak Vilo		www.egeen.ee/u/vilo/

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Jaak Vilo WWW-homepage

Job offers

EGeen is seeking for motivated individuals for challenging software engineering and development projects in the field of medical data management and analysis. Please send your applications and CV-s to my e-mail address.

Teaching

R&D;

EGeen (personal, contact)
Estonian Biocentre (bioinformatics group)
Computer Science, University of Tartu (personal, bioinformatics and DM group)
European Bioinformatics Institute (personal, microarray group)
Computer Science, University of Helsinki (personal)

Other

PC member: WABI 2004, ISMB 2004 SocBin 2005
Activities: GRID in Estonia
Societies: ACM, ISCB, SocBIN, ...
Talks and presentations, forthcoming and past meetings:
Theory days @ Veskisilla,

Expression Profiler - ep.ebi.ac.uk

EPCLUST - Expression Profile Clustering and Analysis (XML UI; eptest; ep-sf@sourceforge)
URLMAP - Map Form contents to other tools and databases (function, pathways etc)
EP:GO - browser for GeneOntology
GENOMES - Genome sequence and expression data extractor (Yeast)
PATMATCH - Match patterns against the sequences, visualize match locations
EP:PPI - Tool for analyzing large-scale protein-protein interaction data
SEQLOGO - Align sequences; create PWM's; draw sequence logos
SPEXS - Sequence Pattern EXhaustive Search
- (Binaries and a rudimentary "manual" are here)
Links to other Microarray data analysis tools, products, resources
Microarray analysis and informatics @ EBI ;
EBI Industry support group

KeeleWeb

KeeleWeb ee.www.ee - on-line dictionaries

Publications, meetings, on-line supplementary data etc.

My publications
- Queries: CiteSeer, PubMed, DBLP, ...
Jaak Vilo: Pattern Discovery from Biosequences
PhD Thesis, Department of Computer Science, University of Helsinki, Finland
Series of Publications A, Report A-2002-3 Helsinki, November 2002, 149 pages
ISSN 1238-8645; ISBN 952-10-0792-3 (paperback); ISBN 952-10-0819-9 (PDF)
[Abstract] [PDF in E-Thesis] [local]
Erdös number 3 (Trail: Paul Erdös, Bela Bollobas, Heikki Mannila, Jaak Vilo) ;-)
Computer Science in Estonia

Other projects from past and present

Predicting Gene Regulatory Elements in Silico on a Genomic Scale
Yeast: Transcription Factor Combination Discoverer, TFCD
Yeast on local machine
Pratt and MDL-Pratt
I used to work for the FDK (From Data to Knowledge) research group at the Department of Computer Science, University of Helsinki .
[Machine Learning, Data Mining, Combinatorial Pattern Matching]
Other old projects I have been involved with

Top links