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Prof. Ehud Shapiro -Publications
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Books
1. Scherz, Z., Maler, O., and Shapiro, E., Hebrew Prolog for Beginners, Ramot Publishing, 1988 (in Hebrew).
2. Sterling, L. and Shapiro, E., The Art of Prolog: Advanced Programming Techniques, MIT Press, 1986. Translated to Japanese, Dutch, French, German and Russian. Second edition, 1994.
3. Shapiro, E., ed., Concurrent Prolog: Collected Papers, Vols. 1 and 2, MIT Press, 1987
4. Shapiro, E., Inductive Inference of Theories from Facts, Kyoritsu Publishing, 1986.
5. Shapiro, E., Algorithmic Program Debugging, MIT Press, 1983.

Journals
10. Tom Ran, Shai Kaplan & Ehud Shapiro, (2009), Molecular implementation of simple logic programs, Nature Nanotechnology, (published online on August 01, 2009) Abstract
9. Dan Frumkin, Adam Wasserstrom, Shalev Itzkovitz, Tomer Stern, Alon Harmelin, Raya Eilam, Gideon Rechavi and Ehud Shapiro, Cell Lineage Analysis of a Mouse Tumor, Cancer Research 68, 5924-5931, July 15, 2008 [PDF]
8. Gregory Linshiz1, Tuval Ben Yehezkel, Shai Kaplan, Ilan Gronau, Sivan Ravid, Rivka Adar & Ehud Shapiro (2008) Recursive construction of perfect DNA molecules from imperfect oligonucleotides. Molecular Systems Biology 4 Article number: 191 doi:10.1038/msb.2008.26 (PDF)
7. Shapiro E, Benenson Y (2006) Bringing DNA Computers to Life. Scientific American, ??, 45-51. (pdf)
6. Adar R., Benenson Y., Linshiz G., Rozner A, Tishby N. and Shapiro E. (2004) Stochastic computing with biomolecular automata. Proc. Natl. Acad. Sci. USA, 101, 9960-65. (pdf)
5. Yaakov Benenson, Binyamin Gil ,Uri Ben-Dor, Rivka Adar & Ehud Shapiro, (2004), An autonomous molecular computer for logical control of gene expression, Nature, 429, 423-429 (published online on April 28, 2004) (pdf)
4. Benenson Y, Adar R, Paz-Elizur T, Livneh Z, Shapiro E, (2003) DNA molecule provides a computing machine with both data and fuel, Proc. Natl. Acad. Sci. USA, Full Text (pdf)
3. Regev A, Shapiro E (2002), Cellular abstractions: Cells as computation, Nature 419, 343. Full text (pdf)
2. K., Benenson, T., Paz-Elitzur, R., Adar, E., Keinan, Z., Livneh and E. Shapiro. (2001) Programmable and autonomous computing machine made of biomolecules. Nature 414, 430-434. Abstract, Full text (pdf)
1. Priami, C., Regev, A., Silverman, W., and Shapiro, E. (2001) Application of stochastic process algebras to bioinformatics of molecular processes. Information Processing Letters. 80, 25-31.

Patents
1. U.S. Patent 6,266,569: 2001. Method and system of computing similar to a Turing machine. Shapiro, E., Karunaratne, K.S.G.
2. United States Patent 5,864,874: 1999. Community co-presence system. Shapiro Ehud.
3. United States Patent 5,819,084: 1998. Co-presence data retrieval system. Shapiro Ehud, Mass Yosef, Sella Ariel.
4. United States Patent 5,222,221: 1993. Methods and apparatus for implementing a concurrent logic program. Houri Avshalom, Shapiro Ehud.
5. United States Patent 4,899,128: 1990. Methods and apparatus for comparing strings using hash values. Shapiro Ehud Y.
6. United States Patent 4,775,934: 1988. Methods for concurrent logic program. Houri Avshalom, Shapiro Ehud Y.

Awards

2004 World Technology Award in Biotechnology

2004 "Scientific American 50", Research Leader in Nanotechnology (English, Hebrew)