NZ616481B2 - Prostate-specific membrane antigen binding proteins and related compositions and methods - Google Patents
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- C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2809—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against the T-cell receptor (TcR)-CD3 complex
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- C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/30—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
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- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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- C07K2317/565—Complementarity determining region [CDR]
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- C07K2317/62—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
- C07K2317/622—Single chain antibody (scFv)
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- C12Y304/17—Metallocarboxypeptidases (3.4.17)
- C12Y304/17021—Glutamate carboxypeptidase II (3.4.17.21)
Abstract
Disclosed is a prostate-specific membrane antigen (PSMA)-binding polypeptide comprising a humanized PSMA-binding domain wherein the PSMA binding domain comprises (i) an immunoglobulin light chain variable region comprising LCDR1, LCDR2, and LCDR3, and (ii) an immunoglobulin heavy chain variable region comprising HCDR1, HCDR2, and HCDR3, wherein the LCDR1, LCDR2 and LCDR3 has the amino acid sequences KSISKY, SGS and QQHIEYPWT, respectively, and the HCDR1, HCDR2, and HCDR3 has the amino acid sequences SGYTFTDYYMH, YFNPYNDYTR and CARSDGYYDAMDYW, respectively. Also disclosed is the use of a dimeric PSMA-binding protein comprising two polypeptide chains of the above-described PSMA-binding protein in the manufacture of a medicament for the treatment of a disorder in a subject characterised by overexpression of prostate-specific membrane antigen (PSMA). gion comprising HCDR1, HCDR2, and HCDR3, wherein the LCDR1, LCDR2 and LCDR3 has the amino acid sequences KSISKY, SGS and QQHIEYPWT, respectively, and the HCDR1, HCDR2, and HCDR3 has the amino acid sequences SGYTFTDYYMH, YFNPYNDYTR and CARSDGYYDAMDYW, respectively. Also disclosed is the use of a dimeric PSMA-binding protein comprising two polypeptide chains of the above-described PSMA-binding protein in the manufacture of a medicament for the treatment of a disorder in a subject characterised by overexpression of prostate-specific membrane antigen (PSMA).
Description
PROSTATE-SPECIFIC NE ANTIGEN BINDING PROTEINS
AND RELATED COMPOSITIONS AND METHODS
This application claims priority to U.S. provisional patent application no. 61/478,449,
filed April 22, 2011, which is incorporated herein by reference in its ty.
Field of the Invention
The present invention relates to mono-specific and multi-specific protein therapeutics
that specifically target cells expressing prostate-specific ne antigen (PSMA) and are
useful for the treatment of disorders characterized by pression of PSMA, such as, for
example, prostate cancer (e.g., te-resistant prostate cancer), related angiogenesis, or
benign prostatic hyperplasia (BPH). In one embodiment, the multi-specific protein therapeutic
binds both PSMA-expressing cells and the T-cell receptor complex on T cells to induce dependent
T-cell cytotoxicity, activation and eration.
Accompanying Sequence Listing
The contents of the text file (Name: "Sequence_Listing.txt", Size: 272,014 bytes;
Date of Creation: April 20, 2012) submitted electronically with PCT/US 2012/034575 are
incorporated herein.
Background
Prostate-specific Membrane Antigen (PSMA), also known as glutamate
carboxypeptidase II and N-acetylated alpha-linked acidic dipeptidase 1, is a dimeric type II
transmembrane glycoprotein belonging to the M28 peptidase family encoded by the gene
FOLH1 (folate hydrolase 1). The protein acts as a glutamate ypeptidase on different
alternative substrates, including the nutrient folate and the neuropeptide N-acetyl-l-aspartyl-lglutamate
and is expressed in a number of tissues such as the prostate, and to a lesser extent, the
small intestine, central and peripheral nervous system and kidney. The gene encoding PSMA is
alternatively spliced to produce at least three variants. A mutation in this gene may be
ated with impaired intestinal absorption of dietary s, resulting in low blood folate
levels and uent hyperhomocysteinemia. Expression of this protein in the
AH25(10245389_1):GCC
brain may be involved in a number of pathological conditions associated with glutamate
excitotoxicity.
PSMA is a well-established, highly restricted prostate-cancer-related cell
membrane antigen. In prostate cancer cells, PSMA is expressed 1000-fold higher than on
normal prostate epithelium (Su ei al., Cancer Res. 1995 44:1441-1443). Expression of
PSMA increases with prostate cancer progression and is highest in metastatic disease,
hormone refractory cases, and higher-grade lesions (Israeli et a/., Cancer Res. 1994,
54:1807-181 1; Wright et a/., Urologic Oncology: Seminars and Original Investigations 1995
1:18-28; Wright et al., Urology 1996 48:326-332; Sweat et al., Urology 1998 52:637-640).
onally, PSMA is abundantly expressed on the neovasculature of a variety of other solid
, including bladder, pancreas, ma, lung and kidney s, but not on normal
neovasculature (Chang et al., Urology 57:801-805; Divgi e a/., Clin. Cancer Res. 1998
4:2729-3279).
PSMA has been shown to be an ant target for immunological ches
such as vaccines or directed therapy with monoclonal antibodies. Unlike other prostaterestricted
molecules that are secretory proteins (PSA, prostatic acid phosphatase), PSMA is
an integral cell-surface membrane protein that is not secreted, which makes it an ideal
target for antibody therapy. PROSTASCINT® (capromab ide) is an 111 In-labelled anti-
PSMA murine monoclonal antibody approved by the FDA for imaging and staging of newly
diagnosed and recurrent prostate cancer patients (Hinkle er a/., Cancer 1998, 83:739-747).
r, capromab binds to an intracellular epitope of PSMA, requiring internalization or
exposure of the internal domain of PSMA, therefore preferentially binding apoptotic or
necrosing cells (Troyer er a/., ic gy: Seminars and Original Investigations 1995
1:29-37; Troyer er a/., Prostate 1997 30:232-242). As a result, capromab may not be of
therapeutic benefit (Liu et al., Cancer Res. 1997 57:3629-3634).
Other monoclonal antibodies which target the external domain of PSMA have been
developed (e.g., J591, J415, J533, and E99) (Liu et al., Cancer Res. 1997 57:3629-3634).
Radiolabeled J591 is currently in clinical trials a et al., Cancer 2010 116(S4):1075).
However, evidence suggests that PSMA may act as a receptor mediating the internalization
of a putative ligand. PSMA undergoes internalization constitutively, and PSMA-specific
antibodies can induce and/or increase the rate of alization, which then causes the
antibodies to accumulate in the endosomes (Liu er al., Cancer Res. 1998 58:4055-4060).
While PSMA-specific internalizing antibodies may aid in the development of eutics to
target the delivery of toxins, drugs, or radioisotopes to the or of prostate cancer cells
(Tagawa et al., Cancer 2010 116(S4):1075), PSMA-specific antibodies utilizing native or
engineered effector isms (e.g., antibody-dependent cell-mediated cytotoxicity
(ADCC), ment-dependent cytotoxicity (CDC), antibody-dependent cell-mediated
phagocytosis (ADCP), or re-directed T-cell cytotoxicity ) are problematic since the
PSMA-specific antibody may be internalized before it is recognized by effector cells.
Summary of the Invention
According to a first aspect of the present invention, there is ed a prostate-specific
membrane antigen (PSMA)-binding polypeptide comprising a humanized PSMA-binding
domain wherein the PSMA binding domain comprises
(i) an immunoglobulin light chain variable region comprising LCDR1, LCDR2, and
LCDR3, and
(ii) an immunoglobulin heavy chain variable region comprising HCDR1, HCDR2,
and HCDR3,
wherein the LCDR1, LCDR2 and LCDR3 has the amino acid ces set forth in SEQ
ID NO:15, 16 and 17, respectively, and the HCDR1, HCDR2, and HCDR3 has the amino acid
sequences set forth in SEQ ID NO:9, 10 and 11, respectively.
[008a] According to a second aspect of the present invention, there is provided a c
PSMA-binding protein comprising first and second polypeptide chains, wherein each of said
polypeptide chains is the inding polypeptide in accordance with the first aspect of the
present invention.
[008b] According to a third aspect of the t invention, there is provided an isolated nucleic
acid encoding the PSMA-binding polypeptide in accordance with the first or second aspect of the
t invention.
[008c] According to a fourth aspect of the present invention, there is provided an isolated
recombinant host cell comprising the c acid in accordance with the third aspect of the
present invention.
[008d] According to a fifth aspect of the present invention, there is provided a composition
comprising the PSMA-binding n in accordance with the second aspect of the present
invention; and a pharmaceutically acceptable carrier, diluent, or excipi+-ent.
10374487
[008e] According to a sixth aspect of the present invention, there is provided a method for
inducing redirected T-cell xicity (RTCC) against a cell expressing prostate-specific
membrane antigen (PSMA), the method comprising contacting said PSMA-expressing cell with
the inding protein in accordance with the first aspect of the present invention, wherein
said contacting is under conditions whereby RTCC against the PSMA-expressing cell is induced
wherein the method is not a method of treatment for the purposes of therapy carried out on the
human body.
[008f] According to a seventh aspect of the present invention, there is provided the use of the
dimeric PSMA-binding protein in accordance with the second aspect of the present ion in
the manufacture of a medicament for the treatment of a disorder in a subject characterized by
overexpression of prostate-specific membrane antigen (PSMA).
[008g] The disclosure herein provides a prostate-specific membrane antigen (PSMA)-binding
polypeptide comprising, in order from amino-terminus to carboxyl-terminus, (a) a PSMA-
binding domain that ically binds human PSMA, (b) a hinge region, and (c) an
globulin constant region. In the disclosure herein, suitable PSMA-binding domains
include binding domains that compete for binding to human PSMA with a single chain Fv
(scFv) having the amino acid sequence set forth in SEQ ID NO:21. In the disclosure herein, the
PSMA-binding polypeptide is capable of forming a dimer with a second, cal polypeptide
chain h association between the respective immunoglobulin constant regions and/or hinge
regions.
In the disclosure , the inding domain comprises (i) an immunoglobulin
light chain variable region comprising CDRs LCDR1, LCDR2, and LCDR3, and/or (ii) an
immunoglobulin heavy chain variable region comprising CDRs HCDR1, HCDR2, and HCDR3.
In certain variations, LCDR3 has the amino acid sequence set forth in SEQ ID NO:17 and/or
HCDR3 has the amino acid sequence set forth in SEQ ID NO:11; in some such sures,
LCDR1 and LCDR2 have the amino acid sequences as set forth in SEQ ID NO:15 and SEQ ID
NO:16, respectively, and/or HCDR1 and HCDR2 have the amino acid sequences as set forth in
SEQ ID NO:9 and SEQ ID NO:10, respectively. In another variation, (i) the light chain variable
region comprises an amino acid sequence that is at least 90%, at least 95%, at least 99%, or
100% cal to the amino acid sequence set forth in SEQ ID NO:5 or SEQ ID NO:23; and/or
(ii) the heavy chain variable region comprises an amino acid sequence that is at least 90%, at
AH25(10245389_1):GCC
least 95%, at least 99%, or 100% identical to the amino acid sequence set forth in SEQ ID NO:2,
SEQ ID NO:25, or SEQ ID NO:27. One or both of the light and heavy chain variable regions
can be humanized.
In certain variations, the PSMA-binding domain is a single chain Fv (scFv) sing
the immunoglobulin light and heavy chain variable regions disclosed herein. In the disclosure
herein, PSMA-binding scFvs include, for example, scFvs comprising an amino acid sequence
that is at least 90%, at least 95%, at least 99%, or 100% identical to the amino acid sequence set
forth in SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:30, SEQ ID NO:31, SEQ ID NO:34, or
SEQ ID NO:35. In the sure herein, the heavy chain variable region of the scFv is
carboxyl-terminal to the light chain variable region (also referred to
AH25(10245389_1):GCC
herein as a "VL-VH orientation"). In some embodiments of an scFv having a VL-VH
ation, the scFv comprises an amino acid sequence that is at least 90%, at least 95%,
at least 99%, or 100% identical to the amino acid sequence set forth in SEQ ID NO:21, SEQ
ID NO:30, or SEQ ID NO:31 . The light chain variable region and heavy chain variable region
of the scFv can be joined by a peptide linker such as, for example, a peptide linker
comprising an amino acid sequence (Gly Ser) , wherein n = 1-5 (SEQ ID NO:165).
In some embodiments of a PSMA-binding polypeptide disclosed herein, the hinge
region is derived from an immunoglobulin hinge region, such as, for example, an
immunoglobulin hinge region of lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, or IgD. Such an
immunoglobulin hinge region can be either a wild-type or an altered immunoglobulin hinge
region.
In further embodiments of a PSMA-binding polypeptide disclosed , the
globulin constant region comprises immunoglobulin CH2 and CH3 domains, such
as, for example, immunoglobulin CH2 and CH3 domains of lgG1 , lgG2, lgG3, lgG4, lgA1 ,
lgA2, or IgD. In another embodiment, the immunoglobulin constant region comprises
immunoglobulin CH2 and CH3 domains and the constant region does not comprise an
immunoglobulin CH1 .
in certain variations, a PSMA-binding polypeptide disclosed herein es at least
one effector function selected from antibody-dependent cell-mediated cytotoxicity (ADCC)
and complement-dependent cytotoxicity (CDC). In some embodiments, the hinge region is
derived from an immunoglobulin hinge region and the immunoglobulin constant region
comprises immunoglobulin CH2 and CH3 domains of lgG1, lgG2, lgG3, or lgG4. In another
embodiment, the immunoglobulin hinge region is derived from the hinge region of lgG1 and
the immunoglobulin constant region comprises immunoglobulin CH2 and CHS domains of
In some embodiments, a PSMA-binding polypeptide disclosed herein comprises an
amino acid sequence that is at least 90%, at least 95%, at least 99%, or 100% cal to
the amino acid sequence set forth in SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:42, SEQ
ID NO:43, SEQ ID NO:70, or SEQ ID NO:72.
In still r embodiments, a PSMA-binding polypeptide disclosed herein r
includes (d) a second hinge region carboxyl-terminal to the immunoglobulin constant ,
and (e) a second binding domain carboxyl-terminal to the second hinge region. In some
embodiments, second hinge s include those derived from a stalk region of a type II C
lectin or an immunoglobulin hinge region. In n variations, the second hinge region has
an amino acid sequence as set forth in SEQ ID NO:63, SEQ ID NO:64, SEQ ID NO:65, or
SEQ ID NO:66.
In another embodiment, the present disclosure provides a prostate-specific
membrane n (PSMA)-binding polypeptide that specifically binds human PSMA and
comprises a first binding domain comprising (i) an immunoglobulin light chain le region
comprising CDRs LCDR1 , LCDR2, and LCDR3, and (ii) an immunoglobulin heavy chain
variable region sing CDRs HCDR1 , HCDR2, and HCDR3; wherein LCDR3 has the
amino acid ce set forth in SEQ ID NO: 17 and/or HCDR3 has the amino acid
sequence set forth in SEQ ID NO : 1 . In some embodiments, LCDR1 and LCDR2 have the
amino acid sequences as set forth in SEQ ID NO: 15 and SEQ ID NO: 16, respectively,
and/or HCDR1 and HCDR2 have the amino acid sequences as set forth in SEQ ID NO:9
and SEQ ID NO: 10, respectively. In some variations, LCDR1, LCDR2, and LCDR3 have the
amino acid sequences as set forth in SEQ ID NO:15, SEQ ID NO:16, and SEQ ID NO:17,
respectively; and HCDR1 , HCDR2, and HCDR3 have the amino acid sequences as set forth
in SEQ ID NO:9, SEQ D NO: 10 and SEQ ID NO:1 1, respectively. In some variations, (i) the
light chain variable region comprises an amino acid sequence that is at least 90%, at least
95%, at least 99%, or 100% identical to the amino acid ce set forth in SEQ ID NO:5
or SEQ ID NO:23; and/or (ii) the heavy chain variable region comprises an amino acid
sequence that is at least 90%, at least 95%, at least 99%, or 100% identical to the amino
acid ce set forth in SEQ ID NO:2, SEQ ID NO:25, or SEQ ID NO:27. In certain
embodiments, the light chain variable region is encoded by a nucleic acid sequence that is at
least 90%, at least 95%, at least 99%, or 100% identical to the nucleic acid sequence set
forth in SEQ D NO:3, SEQ D NO:4, or SEQ D NO:22; and/or the heavy chain le
region is encoded by a nucleic acid sequence that is at least 90%, at least 95%, at least
99%, or 100% identical to the nucleic acid sequence set forth in SEQ D NO:1, SEQ D
NO:24, or SEQ ID NO:26. One or both of the light and heavy chain variable s can be
humanized. In some embodiments, the PSMA-binding polypeptide is capable of forming a
dimer with a second, identical polypeptide chain.
In certain embodiments disclosed herein, the first binding domain is a single chain
Fv (scFv) comprising the immunoglobulin light and heavy chain variable regions. In some
embodiments, PSMA-binding scFvs include, for example, scFvs comprising an amino acid
sequence that is at least 90%, at least 95% at least 99%, or 100% identical to the amino acid
set forth in SEQ ID NO:19, SEQ ID NO:21 , SEQ ID NO:30, SEQ ID NO:31 , SEQ ID NO:34,
or SEQ ID NO:35. In certain embodiments, the heavy chain variable region of the scFv is
carboxyl-terminal to the light chain variable region (a "VL-VH orientation"). In some
ments of an scFv having a VL-VH orientation, the scFv comprises an amino acid
sequence that is at least 90%, at least 95%, at least 99%, or 100% identical to the amino
acid sequence set forth in SEQ ID NO:21 , SEQ ID NO:30, or SEQ ID NO:31 . The light chain
variable region and heavy chain variable region of the scFv can be joined by a peptide linker
such as, for example, a peptide linker comprising an amino acid sequence (Gly Ser) ,
wherein n = 1-5 (SEQ ID NO: 165).
In certain embodiments, the PSMA-binding ptide further includes an
globulin constant . For example, in some variations, the immunoglobulin
nt region comprises immunoglobulin CH2 and CH3 domains of lgG1, lgG2, lgG3,
lgG4, lgA1, lgA2, or IgD. In some variations, the PSMA-binding polypeptide further includes
one or more hinge regions. In certain ments, the hinge region can be derived, for
instance, from a stalk region of a type II C lectin or from an immunoglobulin hinge region.
In r embodiment, the PSMA binding polypeptide comprises, in order from
amino to carboxyl-terminus, a first binding domain, a hinge region, and an immunoglobulin
constant region. A PSMA-binding polypeptide in this format can also be ed to as a
PSMA-specific SMIP molecule. General SMIP configurations are provided, for example, in
US Patent Application Publication Nos. 2003/0133939, 2003/01 18592, and 2005/0136049,
which are incorporated herein in their entirety by reference.
In r embodiment, the orientation of the polypeptide is reversed such that the
polypeptide comprises, in order from amino to carboxyl-terminus, an immunoglobulin
nt region, a hinge region and a first binding domain. In this ation, the
polypeptide can also be referred to as a PSMA-specific PIMS molecule. General PIMS
configurations are provided, for example, in US Patent Application Publication No.
2009/0148447, which is incorporated herein in its ty by reference. In some
embodiments, a PSMA-binding ptide having an immunoglobulin nt region and,
optionally, a hinge region as disclosed herein is capable of forming a dimer with a second,
identical polypeptide chain through association between the respective immunoglobulin
constant regions and/or hinge regions.
In another embodiment, the PSMA-binding polypeptide includes a second binding
domain, such as, e.g., a single-chain Fv (scFv). For example, in some variations, the
PSMA-binding polypeptide comprises, in order from amino-terminus to carboxyl-terminus or
in order from carboxyl-terminus to amino-terminus, (a) a first g domain, (b) a first hinge
region, (c) an immunoglobulin constant region, (d) a second hinge region, and (e) a second
binding domain.
In yet another embodiment, the present disclosure provides a PSMA-binding
ptide as in other embodiments disclosed herein and comprising an additional binding
domain, e.g., a second binding domain, wherein the second binding domain specifically
binds a T cell. In n embodiments, the second binding domain specifically binds a T cell
receptor (TCR) complex or a component thereof. In some embodiments, the second binding
domain includes those that specifically bind CD3, e.g., CD3e. In certain variations, the
second binding domain es for binding to CD3 with the CRIS-7 or HuM291
monoclonal antibody. In some such variations, the second binding domain comprises an
immunoglobulin light chain variable region and an immunoglobulin heavy chain le
region derived from the CRIS-7 or HuM291 monoclonal antibody. For example, in n
embodiments, the light and heavy chain variable regions of the second binding domain are
humanized variable regions comprising, respectively, the light and heavy chain CDRs of the
CRIS-7 or HuM291 onal antibody. In another embodiment, the light and heavy chain
variable regions of the second binding domain are selected from (a) a light chain variable
region comprising an amino acid sequence that is at least 90%, at least 95%, at least 99%,
or 100% identical to the amino acid sequence set forth in residues 139-245 of SEQ ID
NO:47 and a heavy chain variable region comprising an amino acid sequence that is at least
90%, at least 95%, at least 99%, or 100% identical to the amino acid sequence set forth in
residues 1-121 of SEQ ID NO:47; and (b) a light chain variable region comprising an amino
acid ce that is at least 90%, at least 95%, at least 99%, or 100% identical to the
amino acid sequence set forth in residues 634-740 of SEQ ID NO:78 and a heavy chain
variable region sing an amino acid sequence that is at least 90%, at least 95%, at
least 99%, or 100% identical to the amino acid sequence set forth in residues 496-616 of
SEQ ID NO:78.
In certain embodiments of a PSMA-binding polypeptide comprising a second
binding domain, the second binding domain is a -chain Fv (scFv). For example, in
some embodiments of a second binding domain comprising light and heavy chain variable
regions d from the CRIS-7 monoclonal antibody, the second binding domain is a scFv
comprising an amino acid sequence that is at least 90%, at least 95%, at least 99%, or
100% identical to an amino acid sequence selected from (i) the amino acid sequence set
forth in residues 1-245 of SEQ ID NO:47, and (ii) the amino acid sequence set forth in
residues 496-742 of SEQ ID NO:78. In some such embodiments, the PSMA-binding
ptide comprises an amino acid sequence that is at least 90%, at least 95%, at least
99%, or 100% identical to the amino acid sequence set forth in SEQ ID NO:49, SEQ ID
NO:51 , SEQ ID NO:74, SEQ ID NO:76, SEQ ID NO:78, SEQ ID NO:80, SEQ ID NO:82,
SEQ ID NO:84, SEQ ID , SEQ ID NO:160, SEQ ID NO:162, or SEQ ID NO:164.
In r embodiment, the present disclosure provides a dimeric PSMA-binding
protein sing first and second polypeptide chains, wherein each of said polypeptide
chains is a PSMA-binding polypeptide as in any of the embodiments disclosed herein.
|002S] In another embodiment, the present disclosure provides a inding
polypeptide comprising, in order from amino-terminus to carboxyl-terminus, (a) a binding
domain that specifically binds human PSMA, (b) a hinge region, (c) an immunoglobulin
constant region, and (d) an immunoglobulin heterodimerization domain. The
heterodimerization domain can comprise, for example, an immunoglobulin CH1 domain or
an immunoglobulin CL domain. In certain embodiments, the PSMA-binding domain
competes for binding to human PSMA with a single chain Fv (scFv) having the amino acid
sequence set forth in SEQ D NO:21 . In certain ments, the PSMA-binding domains
include, e.g. , the PSMA-binding domains disclosed above.
In some embodiments, the hinge region is derived from an immunoglobulin hinge
region, such as, for example, an immunoglobulin hinge region of lgG1 , lgG2, lgG3, lgG4,
lgA1 , lgA2, or IgD. Such an immunoglobulin hinge region can be either a wild-type or an
d immunoglobulin hinge region. In further embodiments, the globulin constant
region comprises immunoglobulin CH2 and CH3 domains, such as, for example,
globulin CH2 and CH3 domains of lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, IgD, or any
combination thereof; an immunoglobulin CH3 domain of lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2,
IgD, IgE, IgM or any combination thereof; or immunoglobulin CH3 and CH4 domains of IgE,
IgM or a combination thereof.
In certain embodiments, a PSMA-binding polypeptide includes at least one effector
function selected from antibody-dependent cell-mediated cytotoxicity (ADCC) and
complement-dependent cytotoxicity (CDC). In some such ments, the hinge region is
derived from an immunoglobulin hinge region and the immunoglobulin constant region
ses globulin CH2 and CH3 domains of lgG 1, lgG2, lgG3, or lgG4. In more
specific variations, the immunoglobulin hinge region is derived from the hinge region of lgG1
and the globulin constant region comprises immunoglobulin CH2 and CH3 domains
of lgG1 .
In certain embodiments, a PSMA-binding polypeptide comprises an amino acid
ce that is at least 90%, at least 95%, at least 99%, or 100%% identical to the amino
acid sequence set forth in SEQ ID NO:46, SEQ ID NO:58, SEQ ID NO:59, SEQ ID NO:60, or
SEQ ID NO:61 .
In another embodiment, the present disclosure provides a PSMA-binding protein
comprising two, non-identical polypeptide chains that associate by way of heterodimerization
domains (e.g., immunoglobulin heterodimerization domains) to form a dimer. In some
embodiments, the heterodimeric PSMA binding protein ses a first polypeptide chain
comprising, in order from amino-terminus to carboxyl-terminus, (a) a first binding domain that
specifically binds PSMA, (b) a first hinge region, (c) a first immunoglobulin constant region,
and (d) a first immunoglobulin heterodimerization domain; and a second single chain
polypeptide comprising, in order from amino-terminus to carboxyl-terminus, (a') a second
hinge region, (b') a second immunoglobulin sub-region, and (c') a second immunoglobulin
heterodimerization domain that is different from the first immunoglobulin heterodimerization
domain of the first polypeptide chain, wherein the first and second immunoglobulin
heterodimerization domains associate with each other to form a heterodimer. In certain
embodiments, the PSMA-binding domain competes for binding to human PSMA with a
single chain Fv (scFv) having the amino acid sequence set forth in SEQ D NO:21. In
certain ments, the PSMA-binding domains include, e.g., the PSMA-binding domains
disclosed above.
In certain embodiments, heterodimerization domains include domains comprising
either an immunoglobulin CH1 domain or an immunoglobulin CL domain. In some such
embodiments, the first immunoglobulin heterodimerization domain comprises a first
globulin CH1 domain and the second immunoglobulin heterodimerization domain
comprises a first immunoglobulin CL domain. Alternatively, in other embodiments, the first
immunoglobulin heterodimerization domain comprises a first immunoglobulin CL domain and
the second immunoglobulin heterodimerization domain comprises a first immunoglobulin
CH1 domain.
In some embodiments, at least one of the first and second hinge regions is derived
from an immunoglobulin hinge , such as, for example, an immunoglobulin hinge region
of lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, or IgD. Such an globulin hinge region can be
either a wild-type or an altered immunoglobulin hinge region. In further embodiments, at
least one of the first and second immunoglobulin constant regions comprises
immunoglobulin CH2 and CH3 domains, such as, for example, immunoglobulin CH2 and
CH3 domains of lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, IgD, or any combination f; an
immunoglobulin CH3 domain of lgG1, lgG2, lgG3, lgG4, lgA1, lgA2, IgD, IgE, IgM or any
combination thereof; or immunoglobulin CH3 and CH4 domains of IgE, IgM or a ation
thereof.
In n variations of a dimeric inding protein as disclosed herein,
one or both of the first and second polypeptide chains include at least one effector function
ed from antibody-dependent ediated cytotoxicity (ADCC) and complementdependent
cytotoxicity (CDC). In some such embodiments, each of the first and second
hinge regions is derived from an immunoglobulin hinge region and each of the first and
second immunoglobulin constant regions comprises immunoglobulin CH2 and CH3 s
of lgG1 , lgG2, lgG3, or lgG4. In certain embodiments, each of the the first and second
hinge regions is derived from the hinge region of lgG1 and each of the the first and second
immunoglobulin constant region comprises globulin CH2 and CH3 domains of lgG1.
In some embodiments of a heterodimeric PSMA-binding protein as sed
, the second polypeptide chain further includes a second binding domain. For
example, the second ptide chain can further comprise a second binding domain
amino-terminal to the second hinge region.
In certain variations, a heterodimeric PSMA-binding protein as disclosed herein can
be monospecific (i.e., monospecific for PSMA). atively, in other embodiments, the
dimeric PSMA-binding protein is multispecific. For instance, each polypeptide chain of
the heterodimer can comprise different binding domains, e.g., the first polypeptide chain
comprising the PSMA-binding domain and the second ptide chain comprising a
second binding (e.g., amino-terminal to the second hinge region) that is specific for a second
target antigen that is different from PSMA.
In some embodiments of a multispecific, heterodimeric PSMA-binding protein, the
second binding domain specifically binds a T-cell. In certain ments, T-cell-binding
domains include, e.g., the additional g domains and second binding domains disclosed
above. In certain embodiments of a heterodimeric PSMA-binding protein comprising a
second binding domain that specifically binds a T-cell, for example, (a) the first ptide
chain comprises an amino acid sequence that is at least 90%, at least 95%, at least 99%, or
100% identical to the amino acid sequence set forth in SEQ ID NO: 46 and the second
polypeptide chain comprises an amino acid sequence that is at least 90%, at least 95%, at
least 9 9 % , or 100% identical to the amino acid sequence set forth in SEQ ID NO: 47; (b) the
first polypeptide chain comprises an amino acid sequence that is at least 90%, at least 95%,
at least 99%, or 100% identical to the amino acid sequence set forth in SEQ ID NO: 58 and
the second polypeptide chain comprises an amino acid sequence that is at least 90%, at
least 95%, at least 99%, or 100% identical to the amino acid sequence set forth in SEQ ID
NO: 57; (c) the first polypeptide chain comprises an amino acid sequence that is at least
90 % , at least 95%, at least 99%, or 100% identical to the amino acid sequence set forth in
SEQ D NO: 59 and the second polypeptide chain comprises an amino acid sequence that is
at least 90%, at least 95%, at least 99%, or 100% identical to the amino acid sequence set
forth in SEQ ID NO: 57; (d) the first polypeptide chain ses an amino acid sequence
that is at least 99%, at least 95%, at least 99%, or 100% identical to the amino acid
sequence set forth in SEQ ID NO: 60 and the second polypeptide chain comprises an amino
acid sequence that is at least 90%, at least 95%, at least 99%, or 100% cal to the
amino acid sequence set forth in SEQ ID NO: 47; or (e) the first ptide chain comprises
an amino acid sequence that is at least 90%, at least 95%, at least 99%, or 100% identical to
the amino acid sequence set forth in SEQ ID NO: 6 1 and the second polypeptide chain
comprises an amino acid sequence that is at least 90%, at least 95%, at least 99%, or 100%
identical to the amino acid sequence set forth in SEQ ID NO: 47.
In certain embodiments of a dimeric or heterodimeric PSMA-binding protein as
disclosed herein, the PSMA-binding protein exhibits sed serum half-life, reduced
internalization by a cell expressing PSMA, and/or increased time of persistence on the
surface of the cell expressing PSMA as ed to the murine monoclonal antibody 07-
1A4.
In r embodiment, the present disclosure provides an isolated nucleic acid
encoding a PSMA-binding polypeptide. For example, in certain variations, the c acid
comprises the nucleotide sequence set forth in SEQ ID NO NO: 18, SEQ ID NO:20, SEQ ID
NO:22, SEQ D NQ:24, SEQ D NO:26, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:32,
SEQ D :33, SEQ D NO:36, SEQ D NO:37, SEQ D O:40, SEQ D NO:41. SEQ D
NO:44, SEQ D NO:48, SEQ D NO:50, SEQ D NO:53, SEQ D : NO:54, SEQ ID NO:55,
SEQ D NO:56, SEQ ID NO:69, SEQ D NO:71 , SEQ D NO:73, SEQ D O:75, SEQ D
NO:77, SEQ D NO:79 SEQ D NO:81 , SEQ ID NQ;83, SEQ D , SEQ D NO:159,
SEQ ID NO:161 , or SEQ ID NO:163.
In another embodiment, the present disclosure provides an expression vector for
expressing a PSMA-binding polypeptide or protein as disclosed herein in a recombinant host
cell. In some ments, the expression vector comprises a nucleic acid segment
ng the PSMA-binding polypeptide, wherein the nucleic acid segment is operably
linked to regulatory sequences suitable for expression of the c acid segment in a host
cell. In some embodiments, the nucleic acid segment comprises the nucleotide sequence
set forth in SEQ ID NO NO:18, SEQ ID NO:20, SEQ ID NO:22, SEQ ID NO:24, SEQ ID
NO:26, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:36,
SEQ ID NO:37, SEQ ID NO:40, SEQ ID NO:41 , SEQ ID NO:44, SEQ ID NO:48, SEQ ID
NO:50, SEQ ID NO;53, SEQ ID: NO:54, SEQ ID NO:55, SEQ ID NO:56, SEQ ID NO:69,
SEQ ID NO:71 , SEQ D NO:73, SEQ ID NO:75, SEQ ID NO:77, SEQ ID NO:79, SEQ ID
NO:81, SEQ ID NO:83, SEQ ID NO:157, SEQ ID NO:159, SEQ ID NO:161, or SEQ ID
NO:163. In other embodiments, the expression vector comprises first and second
expression units, wherein the first and second expression units respectively comprise first
and second c acid segments encoding the first and second polypeptide chains of a
heterodimeric PSMA-binding protein as in certain embodiments disclosed herein, and
n the first and second nucleic acid segments are operably linked to regulatory
sequences le for expression of the nucleic acid segments in a host cell. In certain
variations, (a) the first nucleic acid segment comprises the nucleotide ce set forth in
SEQ ID NO:44 and the second nucleic acid segment comprises the nucleotide sequence set
forth in SEQ ID NO:45; (b) the first c acid segment comprises the nucleotide sequence
set forth in SEQ ID NO:53 and the second nucleic acid segment comprises the nucleotide
sequence set forth in SEQ ID NO:52; (c) the first nucleic acid segment comprises the
tide sequence set forth in SEQ ID NO:54 and the second nucleic acid segment
comprises the nucleotide sequence set forth in SEQ ID NO:52; (d) the first nucleic acid
segment comprises the nucleotide sequence set forth in SEQ ID NO:55 and the second
c acid segment ses the nucleotide sequence set forth in SEQ ID NO:45; or (e)
the first nucleic acid segment comprises the nucleotide sequence set forth in SEQ ID NO:56
and the second nucleic acid segment comprises the nucleotide sequence set forth in SEQ ID
NO:45.
In another embodiment, the present sure provides a recombinant host cell
comprising an expression vector disclosed herein.
In another embodiment, the present disclosure provides a method for producing a
PSMA-binding polypeptide or n. For example, in some embodiments, the method is for
producing a PSMA-binding polypeptide as disclosed herein. In certain embodiments, the
method generally includes culturing a recombinant host cell comprising an expression
vector, wherein the expression vector comprises a nucleic acid segment that encodes the
PSMA-binding polypeptide and is operably linked to regulatory sequences le for
expression of the c acid segment in the host cell, and wherein the ing is under
conditions whereby the nucleic acid t is expressed, thereby producing the PSMA-
binding polypeptide. In certain variations, the nucleic acid segment ses the nucleotide
sequence set forth in SEQ ID NO NO:18, SEQ ID NO:20, SEQ ID NO:22, SEQ ID NO:24,
SEQ ID NO:26, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:33, SEQ ID
NO:36, SEQ D NO:37, SEQ ID NO:40, SEQ ID NO:41 , SEQ ID NO:44, SEQ ID NO:48,
SEQ ID NO:50, SEQ ID NO:53, SEQ ID: NO:54, SEQ ID NO.55, SEQ ID NO:56, SEQ ID
NO:69, SEQ ID NO:71 , SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, SEQ ID NO:79,
SEQ ID NO:81 , SEQ ID NO:83, SEQ ID NO:157, SEQ ID NO:159, SEQ ID NO:161, or SEQ
ID NO: 163. In certain embodiments, the method further includes recovering the PSMA-
binding polypeptide.
In some embodiments, the method is for producing a dimeric PSMA-binding protein
as disclosed herein. In certain variations, the nucleic acid segment of the expression vector
encodes the PSMA-binding polypeptide as disclosed herein, and the culturing is under
conditions whereby the nucleic acid segment is expressed and the encoded PSMA-binding
polypeptide is produced as a dimeric PSMA-binding protein. The method can further include
ring the dimeric PSMA-binding protein.
In other embodiments, the method is for producing a heterodimeric PSMA-binding
protein disclosed herein. In certain embodiments, the method generally includes culturing a
inant host cell comprising first and second expression units, wherein the first and
second expression units respectively comprise first and second nucleic acid segments
encoding the first and second polypeptide chains of a heterodimeric PSMA-binding protein
as set forth herein, wherein the first and second nucleic acid segments are operably linked to
regulatory sequences suitable for expression of the c acid segments in a host cell, and
wherein the culturing is under ions whereby the first and second nucleic acid segments
are sed and the encoded polypeptide chains are produced as the heterodimeric
PSMA-binding protein. In some embodiments, the method further includes recovering the
heterodimeric PSMA-binding protein.
In another embodiment, the present disclosure provides a composition comprising
any of the PSMA-binding polypeptides or proteins as set forth herein and a pharmaceutically
acceptable carrier, diluent, or ent.
In another embodiment, the present disclosure provides a method for inducing
dy-dependent cell-mediated xicity (ADCC) or complement-dependent
cytotoxicity (CDC) against a cell expressing PSMA. For e, in some embodiments, a
method for inducing ADCC or CDC against the cell expressing PSMA includes contacting
the xpressing cell with a dimeric PSMA-binding protein comprising first and second
polypeptide , wherein each of the polypeptide chains is a PSMA-binding polypeptide
as disclosed herein, and wherein the contacting is under conditions whereby ADCC or CDC
against the PSMA-expressing cell is induced. In other embodiments, a method for inducing
ADCC or CDC against the PSMA-expressing cell includes contacting the cell with a
dimeric PSMA-binding protein as in paragraph , wherein the contacting is under
conditions whereby ADCC or CDC against the PSMA-expressing cell is induced.
In another embodiment, the present disclosure provides a method for inducing
redirected T-cell cytotoxicity (RTCC) against a cell expressing PSMA. In some ions, a
method for inducing RTCC t the cell expressing PSMA includes contacting the PSMA-
expressing cell with a dimeric PSMA-binding protein comprising first and second ptide
chains, wherein each of said polypeptide chains is a PSMA-binding ptide disclosed
herein, and wherein the contacting is under conditions whereby RTCC against the PSMA-
expressing cell is induced. In other embodiments, a method for inducing RTCC against the
PSMA-expressing cell includes ting the cell with a dirneric PSMA-binding
n as disclosed herein, wherein the contacting is under conditions whereby RTCC
t the PSMA-expressing cell is induced.
In another embodiment, the present disclosure provides a method for treating a
disorder in a subject, wherein the disorder is characterized by pression of PSMA. In
some embodiments, the method includes administering to the subject a eutically
effective amount of a dimeric PSMA-binding protein disclosed above. In some such
embodiments, the first and second polypeptide chains of the dimeric PSMA-binding protein
is a PSMA-binding polypeptide, e.g., as disclosed above, and the c PSMA-binding
protein induces redirected T-cell cytotoxicity (RTCC) in the subject. In other variations, the
method includes administering to the subject a therapeutically effective amount of a
heterodirneric inding protein, e.g., as disclosed above. In some ions, the
heterodirneric PSMA-binding protein is a n as disclosed above, and the heterodirneric
PSMA-binding protein induces RTCC in the subject. In certain embodiments of the
disclosed methods, the disorder is a cancer such as, for example, prostate cancer (e.g.,
castrate-resistant prostate cancer), colorectal cancer, gastric , clear cell renal
carcinoma, bladder cancer, or lung cancer. In some embodiments, the disorder is a prostate
disorder such as, e.g., prostate cancer or benign prostatic hyperplasia. In other variations,
the disorder is an neovascular disorder. The neovascular disorder to be treated can be, for
example, a cancer characterized by solid tumor growth such as, e.g., clear cell renal
oma, colorectal cancer, bladder cancer, and lung cancer.
These and other embodiments and/or other aspects of the invention will become
evident upon reference to the following detailed description of the invention and the attached
drawings.
DESCRIPTION OF THE S
Figure 1 is a graph illustrating the results of a binding study used to compare the
parent 4 murine antibody (TSC045) with TSC085, TSC092 and TSC122 in PSMA(+)
(LNCaP) and PSMA(-) (DU-145) prostate cancer cell lines.
Figure 2A is a graph illustrating the s of a binding study used to compare
humanized TSC188 and TSC189 in PSMA(+) (C4-2) and PSMA(-) (DU-145) prostate cancer
cell lines.
Figure 2B is a graph illustrating the results of a binding study used to compare
binding of humanized SCORPION molecules TSC194 and TSC199 to that of parent
humanized SMIP molecules TSC188 and TSC189 and ic Interceptor molecule
TSC122 in PSMA(+) (C4-2) and PSMA(-) (DU-145) prostate cancer cell lines.
Figure 3 is a graph illustrating the results of internalization experiments comparing
the parent 107-1A4 murine dy to PSMA-binding proteins built on eptor and SMIP
scaffolds.
[ 0 2] Figure 4 is a graph illustrating potent target-dependent xic activity over 24
hours ed with the chimeric TSC122 eptor molecule at decreasing concentrations
(300, 100, 30, and 0 p ) in the presence of T cells from human blood f om two different
donors (labeled as AG and VV).
Figure 5 is a graph illustrating cytotoxicity activity of T8C20Q, TSC202, TSC204
ide the parent chimeric Interceptor molecule TSC122.
Figure 8 is a graph illustrating T-ce cytotoxicity mediated by humanized 107-1A4
SCORPION molecules (TSC194, TSC199, TSC212, TSC213) compared to the chimeric
Interceptor molecule TSC122.
Figures 7A and 7B are graphs illustrating target-dependent eration of CD4+ T-
cells (Figure 7A) and CD8+ T-cells e 7B) induced by anti-PSMA bispecific les
(TSC194, TSC199, TSC202 and TSC122) reacting with C4-2 cells.
Figures 8A-8C are graphs illustrating competitive binding studies of mAbs J591 and
J41 5 versus 107-1A4 mAb and chimeric and humanized 107-1A4 SMIP molecules to PSMA
on C4-2 cells. Specifically, Figure 8A shows the results of a competitive binding assay to
determine if the humanized J591 antibody (Hu591) competes with the binding of 107-1A4,
J591 or J415 murine antibodies to PSMA on C4-2 cells; Figure 8B shows the results of a
competitive binding assay to determine if the three murine antibodies compete with the
binding of the ic 107-1 A4 SMIP le (TSC085) to PSMA on C4-2 cells; and
Figure 8C shows the results of a competitive binding assay to determine if the three murine
antibodies compete with the binding of the zed 1Q7-1A4 SMIP molecule (TSC189) to
PSMA on C4-2 cells.
DETAILED DESCRIPTION OF THE INVENTION
General Descripti on
The invention provides PSMA-binding polypeptides and proteins that specifically
bind prostate-specific ne antigen (PSMA). Administration of a therapeutically
effective amount of a PSMA-binding polypeptide or protein of the invention to a patient in
need thereof is useful for treatment of n disorders associated with the over-expression
of PSMA, including n cancers and prostate disorders. In one embodiment, the PSMA-
binding polypeptide or protein simultaneously bind a target cell over-expressing PSMA and a
T-cell, thereby "cross-linking" the target cell over-expressing PSMA and the T-cell. The
binding of both domains to their targets elicits potent target-dependent cted T-cell
cytotoxicity (RTCC) (e.g., induces target-dependent T-cell cytotoxicity, T-cell activation and
T-cell eration).
The section headings used herein are for organizational purposes only and are not
to be construed as limiting the subject matter described. All documents, or portions of
documents, cited herein, including but not limited to patents, patent ations, articles,
books, and ses, are hereby expressly incorporated by reference in their ty for any
purpose. In the event that one or more of the incorporated documents or portions of
documents define a term that contradicts that term's definition in the application, the
definition that appears in this application controls.
In the present description, any concentration range, percentage range, ratio range,
or integer range is to be understood to e the value of any integer within the recited
range and, when appropriate, fractions thereof (such as one tenth and one hundredth of an
integer), unless otherwise ted. As used herein, "about" means ± 20% of the indicated
range, value, or structure, unless ise indicated. It should be understood that the
terms "a" and "an" as used herein refer to "one or more" of the enumerated components
unless otherwise indicated. The use of the alternative (e.g., "or") should be tood to
mean either one, both, or any combination thereof of the alternatives. As used herein, the
terms de" and "comprise" are used synonymously. In addition, it should be understood
that the polypeptides sing the various combinations of the components (e.g., domains
or regions) and substituents described herein, are disclosed by the present application to the
same extent as if each ptide was set forth individually. Thus, selection of particular
components of individual polypeptides is within the scope of the present disclosure.
II. Definitions
As used herein, the term "binding domain" or "binding " refers to the domain,
region, portion, or site of a protein, polypeptide, oligopeptide, or peptide that possesses the
ability to specifically recognize and bind to a target molecule, such as an antigen, ligand,
receptor, substrate, or inhibitor (e.g., CD3, PSMA). Exemplary binding domains include
single-chain antibody variable regions (e.g., domain antibodies, sFv, scFv, scFab), receptor
ectodomains, and ligands (e.g., cytokines, chemokines). In certain embodiments, the
binding domain ses or ts of an antigen binding site (e.g., comprising a variable
heavy chain ce and le light chain sequence or three light chain complementary
determining regions (CDRs) and three heavy chain CDRs from an antibody placed into
alternative framework regions (FRs) (e.g., human FRs ally comprising one or more
amino acid substitutions). A variety of assays are known for identifying binding domains of
the present disclosure that specifically bind a particular target, including Western blot,
ELISA, phage display library screening, and E® interaction analysis. As used
herein, a PSMA-binding polypeptide can have a "first binding domain" and, ally, a
"second binding domain." In certain embodiments, the "first binding domain" is a PSMA-
binding domain and, depending on the ular polypeptide format (e.g., SMIP or PIMS),
can be located at either the amino- or carboxyl-terminus. In certain embodiments
comprising both the first and second binding domains, the second binding domain is a T cell
binding domain such as a scFv derived from a mouse monoclonal antibody (e.g., CRIS-7)
that binds to a T cell surface antigen (e.g., CD3). In other embodiments, the second binding
domain is a second PSMA-binding domain. In yet other embodiments, the second binding
domain is a binding domain other than a PSMA-binding domain or a T cell binding domain.
A binding domain "specifically binds" a target if it binds the target with an affinity or
K (i.e., an equilibrium association constant of a particular binding interaction with units of
1/M) equal to or r than 05 M , while not significantly binding other components
present in a test sample. Binding domains can be classified as "high ty" binding
domains and "low ty" binding domains. "High affinity" binding domains refer to those
binding domains with a K of at least 107 M , at least 108 M 1 , at least 109 M 1 , at least 1010
M , at least 10 1 1 M 1, at least 1012 M 1 , or at least 1013 M . "Low affinity" binding domains
refer to those binding domains with a K of up to 107 M , up to 106 M up to 05 M~ .
Alternatively, affinity can be defined as an equilibrium dissociation nt (K ) of a
particular binding interaction with units of M (e.g., 10 5 M to 0 3 M). Affinities of binding
domain polypeptides and single chain polypeptides according to the t sure can
be readily determined using conventional techniques (see, e.g., ard et al. (1949) Ann.
N.Y. Acad. Sci. 5 1:660; and U.S. Patent Nos. 5,283,173, 5,468,614, or the equivalent).
"CD3" is known in the art as a multi-protein complex of six chains (see, e.g., Abbas
and Lichtman, 2003; Janeway et al., p. 172 and 178, 1999), which are subunits of the T cell
receptor complex. In mammals, the CD3 subunits of the T cell receptor complex are a CD3y
chain, a CD36 chain, two CD3 chains, and a homodimer of 3z chains. The CD3y,
CD36, and CD3e chains are highly related cell surface proteins of the immunoglobulin
superfamily containing a single immunoglobulin domain. The transmembrane regions of the
CD3y, CD35, and CD3e chains are negatively d, which is a characteristic that allows
these chains to associate with the positively charged T cell receptor chains. The intracellular
tails of the CD3y, CD36, and CD3e chains each contain a single conserved motif known as
an receptor tyrosine-based activation motif or ITAM, whereas each 3z chain has
three. It is believed the ITAMs are important for the signaling capacity of a TCR complex.
CD3 as used in the present disclosure can be from s animal species, including human,
monkey, mouse, rat, or other mammals.
As used herein, a "conservative tution" is recognized in the art as a
substitution of one amino acid for another amino acid that has similar properties. Exemplary
conservative substitutions are well-known in the art (see, e.g., WO 97/09433, page 10,
published March 13, 1997; Lehninger, Biochemistry, Second Edition; Worth Publishers, Inc.
NY: Y , pp.71 -77; Lewin, Genes IV, Oxford University Press, NY and Cell Press,
Cambridge, MA (1990), p. 8). In certain embodiments, a conservative substitution includes a
leucine to serine substitution.
As used herein, the term "derivative" refers to a modification of one or more amino
acid es of a peptide by chemical or biological means, either with or t an enzyme,
e.g., by glycosylation, alkylation, acylation, ester formation, or amide formation.
As used herein, a polypeptide or amino acid sequence "derived from" a designated
polypeptide or protein refers to the origin of the polypeptide. In certain embodiments, the
polypeptide or amino acid ce which is derived from a particular sequence (sometimes
referred to as the "starting" or "parent" or "parental" ce) has an amino acid sequence
that is essentially identical to the starting sequence or a portion f, wherein the portion
consists of at least 10-20 amino acids, at least 20-30 amino acids, or at least 30-50 amino
acids, or at least 50-1 50 amino acids, or which is otherwise identifiable to one of ordinary
skill in the art as having its origin in the starting ce.
Polypeptides derived from another polypeptide can have one or more mutations
relative to the starting polypeptide, e.g., one or more amino acid residues which have been
substituted with another amino acid residue or which has one or more amino acid e
insertions or ons. The polypeptide can comprise an amino acid sequence which is not
naturally occurring. Such variations necessarily have less than 100% sequence identity or
similarity with the starting polypeptide. In one embodiment, the variant will have an amino
acid sequence from about 60% to less than 100% amino acid sequence identity or similarity
with the amino acid sequence of the starting ptide. In another embodiment, the
t will have an amino acid sequence from about 75% to less thant 100%, from about
80% to less than 100%, from about 85% to less than 100%, from about 90% to less than
100%, from about 95% to less than 100% amino acid sequence ty or similarity with the
amino acid sequence of the starting polypeptide.
As used herein, unless otherwise provided, a position of an amino acid residue in a
variable region of an immunoglobulin molecule is ed according to the Kabat
numbering convention , Sequences of Proteins of Immunological Interest, 5th ed.
Bethesda, MD: Public Health Service, al Institutes of Health (1991)), and a on of
an amino acid residue in a constant region of an immunoglobulin molecule is numbered
according to EU lature (Ward et al., 1995 Therap. Immunol. 2:77-94).
As used herein, the term "dimer" refers to a biological entity that consists of two
subunits ated with each other via one or more forms of olecular forces, including
covalent bonds (e.g., disulfide bonds) and other interactions (e.g., electrostatic interactions,
salt bridges, hydrogen bonding, and hydrophobic interactions), and is stable under
appropriate conditions (e.g., under physiological conditions, in an aqueous solution suitable
for expressing, purifying, and/or storing recombinant proteins, or under conditions for non-
denaturing and/or non-reducing electrophoresis). A "heterodimer" or "heterodimeric protein,"
as used herein, refers to a dimer formed from two different polypeptides. A heterodimer
does not include an antibody formed from four polypeptides (i.e., two light chains and two
heavy chains). A "homodimer" or imeric protein," as used herein, refers to a dimer
formed from two cal polypeptides.
As used herein, a "hinge " or a "hinge" refers to a polypeptide derived from
(a) an interdomain region of a transmembrane protein (e.g., a type I transmembrane
protein); or (b) a stalk region of a type II C-lectin. For example, a hinge region can be
derived from an omain region of an globulin amily member; suitable
hinge regions within this particular class include (i) immunoglobulin hinge regions (made up
of, for e, upper and/or core region(s)) or functional variants thereof, including wildtype
and altered immunoglobulin hinges, and (ii) regions (or functional variants thereof) that
connect immunoglobulin V-like or immunoglobulin C-like domains.
A "wild-type immunoglobulin hinge region" refers to a naturally occurring upper and
middle hinge amino acid sequences interposed between and connecting the CH1 and CH2
domains (for IgG, IgA, and IgD) or interposed between and connecting the CH1 and CH3
domains (for IgE and IgM) found in the heavy chain of an antibody. In certain embodiments,
a wild type immunoglobulin hinge region sequence is human, and can se a human
IgG hinge region.
A n "altered wild-type immunoglobulin hinge region" or "altered immunoglobulin
hinge region" refers to (a) a wild type immunoglobulin hinge region with up to 30% amino
acid changes [e.g., up to 25%, 20%, 15%, 10%, or 5% amino acid substitutions or
deletions), or (b) a portion of a wild type immunoglobulin hinge region that has a length of
about 5 amino acids (e.g., about 5 , 6 , 7 , 8 , 9 , 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20
amino acids) up to about 120 amino acids (for instance, having a length of about 10 to about
40 amino acids or about 15 to about 30 amino acids or about 15 to about 20 amino acids or
about 20 to about 25 amino acids), has up to about 30% amino acid changes (e.g., up to
about 25%, 20%, 15%, 10%, 5%, 4%, 3%, 2%, or 1% amino acid substitutions or deletions
or a combination thereof), and has an IgG core hinge region as disclosed in
PCT/US201 0/62436 and PCT/US20 10/62404.
As used herein, the term "humanized" refers to a process of making an antibody or
immunoglobulin binding proteins and polypeptides derived from a non-human species (e.g.,
mouse or rat) less immunogenic to , while still retaining n-binding properties of
the original antibody, using genetic engineering techniques. In some embodiments, the
binding domain(s) of an antibody or immunoglobulin binding proteins and polypeptides (e.g.,
light and heavy chain le regions, Fab, scFv) are humanized. Non-human binding
domains can be humanized using techniques known as CDR ng (Jones et al., Nature
2 (1986)) and ts thereof, including "reshaping" (Verhoeyen, et al., 1988 Science
239:1534-1536; Riechmann, at al., 1988 Nature 332:323-337; Tempest, et al., Blo/Technoi
1991 9:268-271), "hyperchimerization" (Queen, t al., 1989 Proc Natl Acad Sc USA
29-10033; Co, et al., 1991 Proc Natl Acad Sci USA 88:2869-2873; Co, et al., 1992
Immunol 148:1 149-1 154), and "veneering" (Mark, et al., "Derivation of therapeutically active
humanized and veneered anti-CD18 antibodies. In: etca f 8W, Daiton BJ, e s. Cellular
adhesion: lar definition to therapeutic potential. New York: Plenum Press, 1994: 291-
3 ). If derived from a man source, other regions of the antibody or immunoglobulin
binding proteins and polypeptides, such as the hinge region and constant region domains,
can also be humanized
A n "immunoglobulin dimerization domain" or "immunoglobulin heterodimerization
domain", as used , refers to an immunoglobulin domain of a polypeptide chain that
preferentially interacts or associates with a different immunoglobulin domain of a second
polypeptide chain, wherein the interaction of the different immunoglobulin heterodimerization
domains ntially contributes to or efficiently promotes heterodimerization of the first and
second polypeptide chains (i.e., the ion of a dimer between two different polypeptide
, which is also referred to as a "heterodimer"). The interactions n
immunoglobulin heterodimerization domains "substantially contributes to or efficiently
promotes" the heterodimerization of first and second polypeptide chains if there is a
statistically significant reduction in the dimerization between the first and second polypeptide
chains in the absence of the immunoglobulin heterodimerization domain of the first
polypeptide chain and/or the globulin heterodimerization domain of the second
polypeptide chain. In certain embodiments, when the first and second polypeptide chains
are ressed, at least 60%, at least about 60% to about 70%, at least about 70% to
about 80%, at least 80% to about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or
99% of the first and second polypetpide chains form heterodimers with each other.
Representative immunoglobulin heterodimerization domains include an immunoglobulin CH1
domain, an immunoglobulin C L domain (e.g., C K or C es), or derivatives thereof,
including wild type immunoglobulin CH1 and CL domains and altered (or mutated)
immunoglobulin CH1 and CL domains, as provided therein.
An "immunoglobulin constant region" or "constant region" is a term defined herein
to refer to a peptide or ptide sequence that corresponds to or is derived from part or
all of one or more constant region s. In certain embodiments, the immunoglobulin
constant region ponds to or is derived from part or all of one or more nt region
domains, but not all constant region domains of a source antibody. In certain embodiments,
the constant region comprises IgG CH2 and CH3 s, e.g., lgG1 CH2 and CH3
domains. In certain embodiments, the constant region does not comprise a CH1 domain. In
certain embodiments, the constant region domains making up the constant region are
human. In some embodiments (for example, in certain variations of a PSMA-binding
polypeptide or protein comprising a second binding domain that specifically binds CD3 or
r T cell surface antigen), the nt region domains of a fusion protein of this
disclosure lack or have minimal effector functions of antibody-dependent ediated
cytotoxicity (ADCC) and complement activation and complement-dependent cytotoxicity
(CDC), while retaining the ability to bind some F receptors (such as F Rn, the neonatal Fc
receptor) and retaining a relatively long half life in vivo n other variations, a fusion protein
of this disclosure includes constant domains that retain such effector function of one or both
of ADCC and CDC. In certain embodiments, a binding domain of this disclosure is fused to
a human igG1 constant region, wherein the lgG1 constant region has one or more of the
following amino acids mutated: leucine at position 234 , leucine at position 235
(L235), glycine at position 237 , glutamate at position 3 8 (£318), lysine at position
320 (K320), lysine at on 322 (K322), or any combination thereof (numbering according
to EU). For example, any one or more of these amino acids can be changed to alanine. In a
further embodiment, an lgG1 Fc domain has each of L234, L235, G237, E318, K320, and
K322 (according to EU numbering) mutated to an alanine (i.e., L234A, L235A, G237A,
E318A, K320A, and K322A, respectively), and optionally an N297A mutation as well (i.e.,
essentially eliminating glycosylation of the CH2 domain).
"Fc region" or "Fc " refers to a polypeptide sequence corresponding to or
derived from the portion of a source antibody that is responsible for binding to antibody
ors on cells and the C1q component of complement. Fc stands for "fragment
crystalline," the fragment of an antibody that will readily form a protein crystal. Distinct
protein fragments, which were originally described by proteolytic digestion, can define the
overall general structure of an immunoglobulin protein. As originally defined in the literature,
the Fc fragment consists of the disulfide-linked heavy chain hinge regions, CH2, and CH3
domains. However, more recently the term has been applied to a single chain consisting of
CH3, CH2, and at least a portion of the hinge sufficient to form a disulfide-linked dimer with a
second such chain. For a review of immunoglobulin structure and function, see Putnam,
The Plasma ns, Vol. V (Academic Press, Inc., 1987), pp. 49-140; and Padlan, Mol.
Immunol. 3 1:169-217, 1994. As used herein, the term Fc includes ts of naturally
occuring sequences.
As used here the term "SMIP" is used to refer to protein scaffold as generally
disclosed in, for example, in US Patent ation Publication Nos. 2003/0133939,
2003/01 18592, and 2005/0136049, which are incorporated herein by reference in their
entirety. The "PSMA-specific SMIP molecules" or "SMIP molecules" described in the
Examples and throughout the disclosure herein should be tood to be PSMA-binding
proteins comprising SMIP scaffolding, e.g., in order from amino to carboxyl-terminus, a first
binding domain, a hinge region, and an immunoglobulin constant nt region.
As used here the term "PIMS" is used to refer to protein scaffold as generally
disclosed in, for e, in US Patent Application Publication No. 2009/0148447, which is
incorporated herein in its entirety by reference. The "PSMA-specific PIMS molecules" or
"PIMS molecules" described in the Examples and throughout the disclosure herein should
be understood to be PSMA-binding proteins sing PIMS scaffolding, e.g., in order from
amino to carboxyl-terminus, an immunoglobulin constant region, a hinge region and a first
g domain.
As used herein, the term "Interceptor" is used to refer to a monospecific or
multispecific dimeric protein scaffold as lly disclosed in PCT applications
PCT/US201 0/62436 and PCT/US201 4, which are incorporated herein in their entirety.
The specific eptor molecules" or "Interceptor molecules" described in the
Examples and throughout the disclosure herein should be understood to be PSMA-binding
proteins comprising Interceptor scaffolding, e.g., two non-identical polypeptide chains, each
polypeptide chain comprising an immunoglobulin heterodimerization domain. The
interfacing immunoglobulin heterodimerization domains are ent. In one embodiment,
the globulin heterodimerization domain comprises a CH1 domain or a derivative
thereof. In r embodiment, the immunoglobulin heterodimerization domain comprises
a CL domain or a derivative thereof. In one embodiment, the CL domain is a C or C
isotype or a derivative thereof.
As used herein, "SCORPION", is a term used to refer to a multi-specific binding
protein scaffold. SCORPION™ is a trademark of nt Product Development Seattle,
LLC. Multi-specific binding proteins and ptides are disclosed, for instance, in PCT
Application Publication No. W O 2007/146968, U.S. Patent Application Publication No.
2006/0051844, PCT Application Publication No. W O 2010/040105, PCT Application
Publication No. WO 03108, and U.S. Patent No. 7,166,707, which are incorporated
herein by reference in their entirety. A ON polypeptide comprises two binding
domains (the domains can be designed to specifically bind the same or different targets),
two hinge regions, and an immunoglobulin constant region. SCORPION proteins are
homodimeric proteins sing two identical, disulfide-bonded SCORPION polypeptides.
The "PSMA-specific SCORPION molecules" or " ON molecules" described in the
Examples and hout the disclosure herein should be understood to be PSMA-binding
proteins comprising SCORPION scaffolding, e.g., two binding domains (the domains can be
designed to specifically bind the same or different targets), two hinge regions, and an
immunoglobulin constant region.
As used herein, the "stalk region" of a type II C-lectin refers to the portion of the
extracellular domain of the type II C-lectin that is located between the C-type lectin-like
domain (CTLD; e.g., similar to CTLD of natural killer cell receptors) and the transmembrane
domain. For example, in the human CD94 molecule (GenBank ion No. AAC50291 . 1 ,
PRI November 30, 1995), the extracellular domain corresponds to amino acid residues 34-
179, whereas the CTLD corresponds to amino acid residues 61-176. Accordingly, the stalk
region of the human CD94 molecule includes amino acid residues 34-60, which is found
between the membrane and the CTLD (see ton et al., Immunity 10:75, 1999; for
ptions of other stalk s, see also Beavil et al., Proc. Nat'l. Acad. Sci. USA 89:753,
1992; and Figdor et al., Nature Rev. Immunol. 2:77, 2002). These type II ins can also
have from six to 10 junction amino acids between the stalk region and the transmembrane
region or the CTLD. In another example, the 233 amino acid human NKG2A protein
(GenBank Accession No. P26715.1, PRI June 15, 2010) has a transmembrane domain
ranging from amino acids 71-93 and an extracellular domain ranging from amino acids 94-
233. The CTLD is comprised of amino acids 119-231 , and the stalk region comprises amino
acids 99-1 16, which is flanked by junctions of five and two amino acids. Other type II C-
s, as well as their ellular ligand-bind domains, omain or stalk regions, and
CTLDs are known in the art (see, e.g., GenBank Accession Nos. NP_001993.2;
AAH07037.1 , PRI July 15, 2006; NP_001 773.1 , PRI June 20, 1010; AAL65234.1 , PRI
January 17, 2002, and CAA04925.1 , PRI November 14, 2006, for the sequences of human
CD23, CD69, CD72, NKG2A and NKG2D and their descriptions, respectively).
As used herein, the "interdomain region" of a transmembrane protein (e.g., a type I
transmembrane protein) refers to a portion of the extracellular domain of the transmembrane
n that is located between two adjacent domains. Examples of interdomain regions
include regions linking adjacent Ig domains of immunoglobulin superfamily s (e.g.,
an immunoglobulin hinge region from IgG, IgA, IgD, or IgE; the region linking the IgV and
lgC2 domains of CD2; or the region linking the IgV and IgC domains of CD80 or CD86).
Another example of an interdomain region is the region linking the non-lg and igC2 domain
of CD22, a type I sialic acid-binding Ig-like lectin.
A polypeptide region "derived from" a stalk region of a type II C-lectin, or ed
from" a transmembrane protein interdomain region (e.g., an immunoglobulin hinge region),
refers to an about five to about 150 amino acid sequence, an about 5 to about 100 amino
acid sequence, an about 5 to about 50 amino acid sequence, an about 5 to about 40 amino
acid sequence, an about 5 to about 30 amino acid sequence, an about 5 to about 25 amino
acid sequence, an about 5 to about 20 amino acid sequence, an about 10 to about 25 amino
acid sequence, an about 10 to about 20 amino acid sequence, about 8 to about 20 amino
acid sequence, about 9 to about 20 amino acid ce, about 10 to about 20 amino acid
sequence, about 11 to about 20 amino acid sequence, about 2 to about 20 amino acid
sequence, about 13 to about 20 amino acid sequence, about 14 to about 20 amino acid
ce, about 5 to about 20 amino acid sequence, or an about 5 , 6 , 7 , 8 , 9 , 10 , 1 , 12 ,
13, 14, 15, 16, 17, 18, 19, or 20 amino acid sequence, wherein all or at least a portion of
which includes (i) a ype stalk region or interdomain region sequence; (ii) a fragment of
the wild-type stalk region or interdomain region sequence; (iii) a polypeptide having at least
80%, 85%, 90%, or 95% amino acid ce ty with either (i) or (ii); or (iv) either (i) or
(ii) in which one, two, three, four, or five amino acids have a deletion, insertion, substitution,
or any combination f, for instance, the one or more changes are substitutions or the
one or more mutations include only one deletion. In some embodiments, a derivative of a
stalk region is more resistant to lytic cleavage as compared to the wild-type stalk
region ce, such as those derived from about eight to about 20 amino acids of
NKG2A, NKG2D, CD23, CD64, CD72, or CD94.
As used herein, the term "junction amino acids" or ion amino acid residues"
refers to one or more (e.g., about 2-10) amino acid residues between two adjacent regions
or domains of a polypeptide, such as between a hinge and an adjacent immunoglobulin
constant region or between a hinge and an adjacent binding domain or between a peptide
linker that links two immunoglobulin variable domains and an adjacent globulin
variable domain. Junction amino acids can result from the uct design of a polypeptide
(e.g., amino acid residues resulting from the use of a restriction enzyme site during the
construction of a nucleic acid molecule encoding a ptide).
As used herein, the phrase a "linker between CH3 and CH1 or CL" refers to one or
more (e.g., about 2-12, about 2-10, about 4-10, about 5-10, about 6-10, about 7-10, about 8-
, about 9-10, about 8-12, about 9-12, or about 10-12) amino acid residues between the C-
terminus of a CH3 domain (e.g., a wild type CH3 or a mutated CH3) and the N-terminus of a
CH1 domain or CL domain (e.g., Ck).
As used herein, the term "patient in need" refers to a patient at risk of, or suffering
from, a disease, disorder or ion that is amenable to treatment or amelioration with a
PSMA-binding protein or polypeptide or a composition thereof provided herein.
As used herein, the term "peptide linker" refers to an amino acid sequence that
connects a heavy chain variable region to a light chain variable region and es a spacer
function compatible with interaction of the two sub-binding domains so that the resulting
polypeptide retains a specific binding ty to the same target le as an antibody that
comprises the same light and heavy chain variable regions. In certain embodiments, a linker
is comprised of five to about 35 amino acids, for instance, about 15 to about 25 amino acids.
As used herein, the term "pharmaceutically acceptable" refers to molecular entities
and compositions that do not produce allergic or other serious adverse reactions when
stered using routes well known in the art. Molecular entities and compositions
approved by a regulatory agency of the Federal or a state government or listed in the U.S.
Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more
particularly in humans are considered to be "pharmaceutically acceptable."
As used herein, the term "promoter" refers to a region of DNA involved in binding
RNA polymerase to initiate transcription.
{0089] As used herein, the terms "nucleic acid," "nucleic acid molecule," or
"polynucleotide" refer to deoxyribonucleotides or ribonucleotides and polymers thereof in
either single- or double-stranded form. Unless specifically limited, the terms encompass
nucleic acids containing ues of l nucleotides that have similar binding properties
as the reference nucleic acid and are metabolized in a manner similar to naturally occurring
nucleotides. Unless otherwise indicated, a ular nucleic acid ce also implicitly
encompasses conservatively modified variants thereof (e.g., degenerate codon
tutions) and complementary ces as well as the sequence explicitly indicated.
Specifically, degenerate codon substitutions can be achieved by generating sequences in
which the third on of one or more selected (or all) codons is substituted with mixed-
base and/or deoxyinosine residues (Batzer e a/. (1991) Nucleic Acid Res. 19:5081; Ohtsuka
e a/. (1985) J. Biol. Chem. 260:2605-2608; Cassol e a/. (1992); Rossolini et al. (1994) Mol.
Cell. Probes 8:91-98). The term nucleic acid is used interchangeably with gene, cDNA, and
mRNA encoded by a gene. As used herein, the terms "nucleic acid," "nucleic acid molecule,"
or "polynucleotide" are intended to include DNA molecules (e.g., cDNA or genomic DNA),
RNA molecules (e.g., mRNA), analogs of the DNA or RNA generated using nucleotide
analogs, and derivatives, nts and homologs thereof.
The term "expression" refers to the biosynthesis of a product d by a nucleic
acid. For example, in the case of nucleic acid segment encoding a polypeptide of interest,
sion involves transcription of the nucleic acid segment into mRNA and the translation
of mRNA into one or more polypeptides.
The terms "expression unit" and "expression cassette" are used interchangeably
herein and denote a nucleic acid segment encoding a polypeptide of interest and capable of
providing expression of the nucleic acid segment in a host cell. An expression unit typically
comprises a transcription promoter, an open reading frame ng the polypeptide of
st, and a transcription terminator, all in operable configuration. In addition to a
riptional promoter and terminator, an sion unit can further include other nucleic
acid segments such as, e.g., an enhancer or a enylation signal.
The term "expression vector," as used herein, refers to a c acid molecule,
linear or circular, comprising one or more expression units. In addition to one or more
expression units, an expression vector can also include additional nucleic acid segments
such as, for example, one or more origins of replication or one or more selectable markers.
sion s are generally derived from plasmid or viral DNA, or can contain elements
of both.
As used herein, the term nce identity" refers to a relationship between two or
more polynucleotide sequences or between two or more polypeptide sequences. When a
position in one sequence is occupied by the same nucleic acid base or amino acid residue in
the corresponding position of the comparator sequence, the sequences are said to be
"identical" at that position. The percentage "sequence identity" is calculated by determining
the number of positions at which the identical nucleic acid base or amino acid residue occurs
in both sequences to yield the number of "identical" positions. The number of "identical"
positions is then divided by the total number of positions in the comparison window and
multiplied by 100 to yield the percentage of "sequence identity." Percentage of "sequence
identity" is determined by comparing two optimally aligned sequences over a comparison
window. The ison window for nucleic acid sequences can be, for instance, at least
, 30, 40, 50, 80, 70, 80, 90, 100, 1 0 , 120, 130, 140, 150, 180, 170, 180, 190, 200, 300,
400, 500, 800, 700, 800, 900 or 1000 or more nucleic acids in length. The comparison
windon for polypeptide sequences can be, for instance, at least 20, 30, 40, 50, 80, 70, 80,
90, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 300 or more amino acids in
length. In order to optimally align sequences for comparison, the portion of a polynucleotide
or ptide sequence in the comparison window can comprise additions or deletions
termed gaps while the reference sequence is kept constant. A n optimal alignment is that
ent which, even with gaps, produces the greatest possible number of "identical"
positions between the reference and comparator ces. Percentage nce
identity" between two ces can be determined using the version of the program
"BLAST 2 Sequences" which was available from the National Center for Biotechnology
Information as of September 1, 2004, which program incorporates the programs BLASTN
(for nucleotide sequence comparison) and BLASTP (for polypeptide sequence ison),
which programs are based on the algorithm of ariin and A!tsc u (Proc. Natl. Acad. Sci.
USA 90(12):5873-5877, 1993). When utilizing "BLAST 2 ces," parameters that were
default parameters as of September 1, 2004, can be used for word size (3), open gap
penalty ( 1 1 , extension gap penalty (1), gap dropoff (50), expect value (10) and any other
ed ter including but not limited to matrix option. Two nucleotide or amino acid
sequences are considered to have "substantially similar sequence identity" or "substantial
sequence identity" if the two sequences have at least 80%, at least 85%, at least 90%, at
least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity
relative to each other.
As used herein, a "polypeptide" or "polypeptide chain" is a single, linear and
contiguous arrangement of covalently linked amino acids. It does not include two
polypeptide chains that link together in a non-linear fashion, such as via an interchain
disulfide bond (e.g., a half immunoglobulin molecule in which a light chain links with a heavy
chain via a ide bond). Polypeptides can have or form one or more intrachain disulfide
bonds. With regard to polypeptides as described herein, reference to amino acid residues
corresponding to those specified by SEQ ID NO es post-translational modifications of
such residues.
095] A "protein" is a macromo!ecule comprising one or more polypeptide chains. A
protein can also comprise ptidic components, such as carbohydrate groups.
ydrates and other non-peptidic substituents can be added to a protein by the eel! in
which the protein is produced, and will vary with the type of cell. Proteins are defined herein
in terms of their amino acid backbone structures; tuents such as carbohydrate groups
are generally not ied, but may be present nonetheless.
As used herein, "small modular immunopharmaceutical proteins" or SMIP refers to
a protein scaffold generally disclosed, for instance, U.S. Patent ation Nos.
2003/0133939, 2003/01 18592, and 2005/0136049. SMIP™ is a trademark of Emergent
Product Development Seattle LLC. A SMIP protein can se a polypeptide chain having
a binding domain, a hinge region and an immunoglobulin constant region.
The terms "amino-terminal" and "carboxyl-terminal" are used herein to denote
positions within polypeptides. Where the context allows, these terms are used with
reference to a particular sequence or portion of a polypeptide to denote proximity or relative
position. For example, a certain ce positioned carboxyl-terminal to a reference
sequence within a polypeptide is located proximal to the yl-terminus of the reference
sequence, but is not necessarily at the carboxyl-terminus of the complete polypeptide.
"T cell receptor" (TCR) is a molecule found on the surface of T cells that, along with
CD3, is generally responsible for recognizing antigens bound to major ompatibility
complex (MHC) molecules. It consists of a ide-linked heterodimer of the highly variable
a and b chains in most T cells. In other T cells, an alternative receptor made up of variable g
and d chains is expressed. Each chain of the TCR is a member of the immunoglobulin
superfamily and possesses one inal immunoglobulin variable domain, one
immunoglobulin constant domain, a embrane region, and a short cytoplasmic tail at
the C-terminal end (see Abbas and Lichtman, Cellular and Molecular Immunology (5th Ed.),
Editor: Saunders, elphia, 2003; Janeway et al., Immunobiology: The Immune System
in Health and Disease, 4th Ed., t Biology Publications, p148, 149, and 172, 1999).
TCR as used in the present disclosure can be from various animal species, including human,
mouse, rat, or other mammals.
"TCR complex," as used herein, refers to a complex formed by the association of
CD3 chains with other TCR chains. For example, a TCR complex can be composed of a
CD3y chain, a CD3 chain, two CD3e chains, a mer of 3z chains, a TCRa chain,
and a TCR chain. Alternatively, a TCR complex can be composed of a CD3y chain, a
CD3 chain, two CD3e chains, a homodimer of 3z chains, a TCRy chain, and a TCR6
chain.
"A component of a TCR complex," as used herein, refers to a TCR chain (i.e.,
TCRa, TCR3, TCRy or TCR6), a CD3 chain (i.e., CD3y, CD35, CD3£ or ϋ 3z) , or a complex
formed by two or more TCR chains or CD3 chains (e.g., a complex of TCRa and TCR , a
complex of TCRY and TCR5, a complex of CD3£ and CD35, a complex of C D 3Y and CD3e,
or a sub-TCR complex of TCRa, TCRP, CD3y, CD35, and two C D 3 chains).
[ 101] "Antibody-dependent cell-mediated cytotoxicity" and "ADCC," as used herein, refer
to a ediated process in which nonspecific cytotoxic cells that express FcyRs (e.g. ,
monocytic ceils such as l Killer (NK) cells and macrophages) recognize bound
antibody (or other protein capable of binding FcyRs) on a target cell and subsequently cause
lysis of the target cell . In principle, any effector cell with an ting FcyR can be triggered
to mediate ADCC. The primary cells for mediating ADCC are NK cells, which express only
Fc R , whereas monocytes, depending on their state of activation, localization, or
entiation, can express FcyR , FcyR and F yRil!. For a review of FcyR expression on
poietic ceils, see, e.g. , Ravetch et al. , 1991 , Annu. Rev. Immunol. , 9:457-92.
[ 102] The term g ADCC activity," as used herein in reference to a polypeptide or
protein, means that the polypeptide or protein (for example, one comprising an
immunoglobulin hinge region and an immunoglobulin constant region having CH2 and CH3
domains, such as derived from !gG (e.g. , lgG 1)), is capable of mediating antibodydependent
ediated cytotoxicity (ADCC) through binding of a cytolytic Fc receptor (e.g. ,
FcyR!il) on a cytolytic immune effector cell expressing the Fc receptor (e.g. , an NK ceil).
[0 3] "Complement-dependent cytotoxicity" and "CDC," as used herein, refer to a
process in which components in normal serum ("complement"), together with an dy or
other C 1q-complement-binding protein bound to a target antigen, exhibit lysis of a target cell
expressing the target antigen. Complement consists of a group of serum proteins that act in
concert and in an orderly ce to exert their effect.
[01 04] The terms "classical complement pathway" and "classical complement system," as
used herein, are synonymous and refer to a particular pathway for the activation of
complement. The classical pathway requires antigen-antibody complexes for initiation and
involves the activation, in an orderly fashion, of nine major protein components designated
C 1 h C9. For several steps in the activation s, the product is an enzyme that
zes the subsequent step. This cascade provides amplification and activation of large
amounts of complement by a relatively small l signal.
[01 05] The term "having CDC activity," as used herein in reference to a polypeptide or
protein, means that the polypeptide or protein (for example, one comprising an
immunoglobulin hinge region and an immunoglobulin constant region having CH2 and CH3
domains, such as derived from IgG (e.g., lgG 1)) is capable of mediating complementdependent
cytotoxicity (CDC) through g of C 1q complement n and activation of
the classical complement system.
"Redirected T-cell cytotoxicity" and " as used herein, refer to a T-cellmediated
process in which a cytotoxic T-cell is recruited to a target cell using a multi-specific
protein that is capable of specifically binding both the cytotoxic T-cell and the target cell, and
whereby a -dependent cytotoxic T-cell response is ed against the target cell.
The terms "neovascularization" and genesis" are used interchangeably
herein. Neovascularization and angiogenesis refer to the generation of new blood vessels
into cells, tissue, or organs. The control of angiogenesis is typically altered in certain
disease states and, in many case, the pathological damage associated with the disease is
related to altered or unregulated angiogenesis. Persistant, unregulated angiogenesis occurs
in a variety of disease states, including those characterized by the abnormal growth by
endothelial ceils, a d supports the pathological damage seen in these conditions including
leakage and permeability of blood vessels.
The term "neovascular disorder" are used herein refers to any disease or disorder
having a pathology that is ed, at least in part, by increased or unregulated
angiogenesis activity. Examples of such diseases or ers include various cancers
comprising solid tumors. Such diseases or ers comprising a vasculature characterized
by PSMA overexpression (e.g., certain cancers sing solid tumors, such as clear cell
renal carcinoma, colorectal cancer, bladder cancer, and lung cancer) are particularly
amenable to certain treatment methods for inhibition angiogenesis, as bed further
herein.
As used herein, the term "treatment," "treating," or "ameliorating" refers to either a
therapeutic treatment or prophylactic/preventative treatment. A treatment is therapeutic if at
least one symptom of disease in an individual receiving treatment improves or a treatment
can delay worsening of a progressive disease in an individual, or t onset of additional
associated diseases.
As used herein, the term "therapeutically effective amount (or dose)" or "effective
amount (or dose)" of a specific g molecule or compound refers to that amount of the
compound sufficient to result in amelioration of one or more symptoms of the disease being
treated in a statistically significant . When referring to an individual active ingredient,
administered alone, a therapeutically effective dose refers to that ingredient alone. When
referring to a combination, a therapeutically ive dose refers to combined amounts of
the active ingredients that result in the therapeutic , whether administered serially or
aneously (in the same formuation or concurrently in separate formulations).
As used herein, the term formation," fection," and "transduction" refer
to the transfer of nuc!eic acid (i.e., a nucleotide polymer) into a cell. As used herein, the
term "genetic transformation" refers to the transfer and incorporation of DNA, especially
recombinant DNA, into a cell. The transferred c acid can be introduced into a cell via
an expression vector.
[01 2] As used herein, the term "variant" or "variants" refers to a nucleic acid or
polypeptide differing from a reference nucleic acid or polypeptide, but retaining essential
properties thereof. Generally, variants are overall closely similar, and, in many s,
identical to the reference nucleic acid or polypeptide. For ce, a t may exhibit at
least about 70%, at least about 80%, at least about 90%, at least about 95%, at least about
96%, at least about 97%, at least about 98% or at least about 99% sequence identity
compared to the active portion or full length reference nucleic acid or polypeptide.
[01 3] The terms "light chain variable region" (also referred to as "light chain le
domain" or "VL") and "heavy chain variable region" (also referred to as "heavy chain variable
domain" or "VH") refer to the variable binding region from an antibody light and heavy chain,
respectively. The variable binding regions are made up of discrete, well-defined sub-regions
known as "complementarity ining regions" (CDRs) and "framework regions" (FRs). In
one embodiment, the FRs are humanized. The term "CL" refers to an oglobulin light
chain constant region" or a "light chain constant region," i.e. , a constant region from an
dy light chain. The term "CH" refers to an "immunoglobulin heavy chain constant
region" or a "heavy chain constant region," which is further divisible, depending on the
antibody isotype into CH1, CH2, and CH3 (IgA, IgD, IgG), or CH1, CH2, CH3, and CH4
domains (IgE, IgM). A "Fab" (fragment antigen binding) is the part of an antibody that binds
to antigens and includes the variable region and CH1 domain of the heavy chain linked to
the light chain via an inter-chain disulfide bond.
III. PSMA-bindinq Polypeptides . Proteins, and ents Thereof
[01 1 ] The t disclosure provides polypeptides and proteins comprising binding
domains, in particular, a first binding domain that specifically binds PSMA. The polypeptides
and proteins comprising binding domains of this disclosure can further comprise
immunoglobulin nt s, linker es, hinge regions, immunoglobulin
zation/heterodimerization domains, junctional amino acids, tags, efc. These
components of the disclosed polypeptides and proteins are described in further detail below.
[01 5] Additionally, the PSMA-binding polypeptides and proteins disclosed herein can be
in the form of an antibody or a fusion protein of any of a variety of different formats (e.g., the
fusion protein can be in the form of a SMI P molecule, a PIMS molecule, a SCORPION
molecule or an Interceptor molecule).
A PSMA-binding n in accordance with the present invention generally
includes at least one PSMA-binding polypeptide chain comprising (a) a PSMA-binding
domain as set forth herein. In certain variations, the PSMA-binding polypeptide further
includes (b) a hinge region carboxyl-terminal to the PSMA-binding domain, and (c) an
immunoglobulin constant region (e.g., a SMIP molecule). In further variations, the PSMA-
binding polypeptide further includes (d) a second hinge region carboxyl-terminal to the
immunoglobulin constant region, and (e) a second binding domain carboxyl-terminal to the
second hinge region (e.g., a SCORPION polypeptide).
In yet other variations, the PSMA-binding polypeptide ses (b) a hinge region
amino-terminal to the PSMA-binding domain, and (c) an immunoglobulin sub-region aminoterminal
to the hinge region (e.g., a PIMS polypeptide).
lly, PSMA-binding polypeptides of the above formats (SMIP, SCORPION, or
PIMS) are capable of homodimerization, typically through disulfide bonding, via the
immunoglobulin constant region and/or hinge region (e.g., via an immunoglobulin constant
region comprising IgG CH2 and CH3 domains and an IgG hinge ). Thus, in certain
embodiments of the t invention, two identical PSMA-binding polypeptides
homodimerize to form a dimeric PSMA-binding protein.
In other embodiments, a PSMA-binding polypeptide further includes a
heterodimerization domain that is capable of heterodimerization with a different
heterodimerization domain in a second, non-identical polypeptide chain. In certain
variations, the second polypeptide chain for heterodimerization es a second g
domain. Accordingly, in certain embodiments of the present invention, two entical
polypeptide chains, one comprising the PSMA-binding domain and the second optionally
comprising a second binding domain, dimerize to form a heterodimeric PSMA-binding
protein.
inding ptides, proteins, and their various components are further
described herein below.
A . g Domains
As indicated above, an immunoglobulin binding polypeptide of the present
disclosure comprises a binding domain that ically binds PSMA. In some ions, the
PSMA-binding domain is capable of competing for binding to PSMA with an antibody having
V and V regions having amino acid sequences as shown in SEQ ID NO:5 and SEQ ID
L H
NO:2, respectively (e.g., mAb 107-1A4), or with a single-chain Fv (scFv) having an amino
acid ce as shown in SEQ D NO:21 . In certain embodiments, the PSMA-binding
domain ses (i) an immunoglobulin light chain variable region (V ) comprising CDRs
LCDR1 , LCDR2, and LCDR3, and (ii) an immunoglobulin heavy chain variable region (V )
comprising CDRs HCDR1, HCDR2, and HCDR3. le PSMA-binding domains include
those having V and V regions derived from mAb 107-1A4. In some such embodiments,
LCDR3 has the amino acid sequence set forth in SEQ ID NO:17 and/or HCDR3 has the
amino acid sequence set forth in SEQ ID NO:1 ; and LCDR1 and LCDR2 optionally have
the amino acid sequences as set forth in SEQ ID NO: 15 and SEQ ID NO: 16, respectively,
and HCDR1 and HCDR2 optionally have the amino acid sequences as set forth in SEQ ID
NO:9 and SEQ ID NO: 10, respectively. In some embodiments, for example, LCDR1 ,
LCDR2, and LCDR3 have the amino acid sequences respectively shown in SEQ ID NOs:15,
16, and 17; and/or HCDR1 , HCDR2, and HCDR3 have the amino acid sequences as
respectively shown in SEQ ID NOs:9, 10, and 11.
[01 22] In certain embodiments, a PSMA-binding protein can se one or more
additional binding domains (e.g., second binding domain) that bind a target other than
PSMA. These other target molecules can comprise, for example, a particular ne or a
molecule that targets the binding domain polypeptide to a particular cell type, a toxin, an
additional cell receptor, an antibody, etc.
[01 23] In certain embodiments, a binding domain, for instance, as part of an Interceptor or
SCORPION le, can comprise a TCR binding domain for recruitment of T cells to
target cells expressing PSMA. In certain embodiments, a polypeptide heterodimer as
described herein can comprise a binding domain that specifically binds a TCR complex or a
ent thereof (e.g., TCRa, TCR , CD3y, CD35, and C D 3 ) and r binding
domain that specifically binds to PSMA.
[01 24] Exemplary anti-CD3 antibodies from which the binding domain of this disclosure
can be derived e CRIS-7 monoclonal antibody (Reinherz, E . L . et al. (eds.), Leukocyte
typing II., Springer Verlag, New York, (1986); V and V amino acid sequences respectively
L H
shown in SEQ ID NO: 153
(QWLTQSPAIMSAFPGEKVTMTCSASSSVSYMNWYQQKSGTSPKRWIYDSS
KLASGVPARFSGSGSGTSYSLTISSMETEDAATYYCQQWSRNPPTFGGGTKLQITR) and
SEQ ID NO: 154
(QVQLQQSGAELARPGASVKMSCKASGYTFTRSTMHWVKQRPGQGLEWIGYINP
SSAYTNYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCASPQVHYDYNGFPYWGQ
SA)); HuM291 (Chau et al. (2001) Transplantion 7 1:941-950; V and V amino acid
L H
sequences respectively shown in SEQ ID NO:86
(DIQMTQSPSSLSASVGDRVTITCSASSSV
SYMNWYQQKPGKAPKRLIYDTSKLASGVPSRFSGSGSGTDFTLTfSSLQPEDFATYYCQQ
WSSNPPTFGGGTKVEIK) and SEQ D NO:87
(QVQLVQSGAEVKKPGASVKVSCKASGYTFISY
TMHVWRQAPGQGLEWMGYINPRSGYTHYNQKLKDKATLTADKSASTAYMELSSLRSEDT
AVYYCARSAYYDYDGFAYWGQGTLVTVSS)); BC3 monoclonal antibody (Anasetti et al.
(1990) J. Exp. Med. 172:1691); OKT3 monoclonal antibody (Ortho multicenter Transplant
Study Group (1985) N . Engl. J. Med. 313:337) and derivatives thereof such as OKT3 ala-ala
(also referred to as OKT3 AA-FL or OKT3 FL), a humanized, Fc variant with alanine
tutions at ons 234 and 235 (Herold et al. (2003) J. Clin. Invest. 11:409);
visilizumab (Carpenter et al. (2002) Blood 99:2712), G19-4 monoclonal antibody (Ledbetter
et al., 1986, J. Immunol. 45) and 145-2C1 1 monoclonal antibody (Hirsch et al. (1988)
J. Immunol. 140: 3766). An exemplary anti-TCR antibody is the BMA031 monoclonal
antibody (Borst et al. (1990) Human Immunology 29:175-188).
In some embodiments, a binding domain is a single-chain Fv fragment (scFv) that
comprises V and V regions specific for a target of st. In certain embodiments, the V
H L H
and V regions are human.
In certain embodiments, a PSMA-binding domain ses or is a scFv that is at
least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about
94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at
least about 99%, at least about 99.5%, or 100% identical to an amino acid sequence of a
scFv of SEQ ID NO: 19, 2 1, 30, 31, 34 or 35.
In related embodiments, a inding domain comprises or is a sequence that
is at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least
about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%,
at least about 99%, at least about 99.5%, or 100% identical to an amino acid sequence of a
light chain variable region (V ) (e.g., SEQ ID NO:23) or to a heavy chain variable region (V )
L H
(e.g., SEQ ID NO:25 or SEQ ID NO:27), or both.
In further embodiments, each CDR comprises no more than one, two, or three
substitutions, insertions or deletions, as compared to that from a monoclonal antibody or
fragment or derivative thereof that specifically binds to a target of interest (e.g., PSMA).
In some embodiments of a PSMA-binding protein comprising a second binding
domain that specifically binds CD3£, the second g domain competes for binding to
CD3e with the CRIS-7 or HuM291 onal antibody. In n variations, the CD3-
binding domain comprises an immunoglobulin light chain variable region (V ) and an
globulin heavy chain variable region (V ) derived from the CRIS-7 or HuM291
monoclonal dy (e.g., the V and V of the second binding domain can be humanized
L H
variable regions comprising, respectively, the light chain CDRs and the heavy chain CDRs of
the onal antibody). For example, the V and V regions derived from CRIS-7 can be
L H
selected from (a) a V region comprising an amino acid sequence that is at least 95%
identical or 100% to the amino acid sequence set forth in residues 139-245 of SEQ ID
NO:47 and a V region comprising an amino acid sequence that is at least 95% identical or
100% to the amino acid sequence set forth in residues 1-122 of SEQ ID NO:47; and (b) a V
region comprising an amino acid sequence that is at least 95% identical or 100% identical to
the amino acid sequence set forth in residues 634-740 of SEQ ID NO:78 and a V region
comprising an amino acid sequence that is at least 95% or 100% identical to the amino acid
sequence set forth in es 496-616 of SEQ ID NO:78.
In certain embodiments, a binding domain V and/or V region of the present
L H
disclosure is derived from a V and/or V of a known monoclonal antibody (e.g., 107-1 A4,
L H
CRIS-7, or HuM291) and contains about one or more (e.g., about 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10)
insertions, about one or more (e.g., about 2 , 3 , 4, 5 , 6 , 7 , 8 , 9 , 10) ons, about one or
more (e.g., about 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10) amino acid substitutions (e.g., conservative amino
acid tutions or non-conservative amino acid substitutions), or a combination of the
above-noted changes, when compared with the V and/or V of a known monoclonal
L H
antibody. The insertion(s), deletion(s) or substitution(s) can be anywhere in the V and/or V
L H
region, including at the amino- or carboxyl-terminus or both ends of this region, provided that
each CDR comprises zero changes or at most one, two, or three changes and provided a
binding domain containing the modified V and/or V region can still specifically bind its
L H
target with an affinity r to the wild type binding domain.
In some variations, the binding domain is a single-chain Fv (scFv) sing
immunoglobulin V and V regions joined by a peptide linker. The use of peptide linkers for
joining V and V regions is well-known in the art, and a large number of publications exist
within this particular field. A widely used peptide linker is a 15mer consisting of three
repeats of a G!y-Gly-G!y-G!y-Ser amino acid sequence ((Giy Ser) ) (SEQ D NO: 152). Other
linkers have been used, and phage display technology, as well as selective infective phage
logy, has been used to diversify and select appropriate linker sequences (Tang et al.,
J. Biol. Chem. 271, 15686, 1996; Hennecke e a/., Protein Eng. 11, 405-410, 1998).
In certain embodiments, the V and V regions are joined by a peptide linker having an
amino acid sequence comprising the a (Gly Ser) , wherein n = 1-5 (SEQ ID NO: 165).
Other suitable linkers can be obtained by optimizing a simple linker (e.g., (Gly Ser) ) through
random mutagenesis.
In certain embodiments, a binding domain comprises humanized immunoglobulin
V and/or V regions. Techniques for humanizing immunoglobulin V and V regions are
L H L H
known in the art and are sed, for example, in United States Patent Application
Publication No. 2006/0153837.
"Humanization" is expected to result in an antibody that is less immunogenic, with
complete retention of the antigen-binding properties of the original molecule. I order to
retain all of the antigen-binding properties of the al antibody, the structure of its antigen
binding site should be reproduced in the ized" version. This can be achieved by
grafting only the nonhuman CDRs onto human variable framework domains and constant
regions, with or without retention of critical framework residues (Jones e a/., Nature 321:522
; Verhoeyen e a/., Science 239:1539 (1988)) or by recombining the entire nonhuman
variable domains (to preserve -binding ties), but "cloaking" them with a human¬
like surface through judicious replacement of exposed es (to reduce antigenicity)
(Padlan, Molec. l. 28:489 (1991)).
Essentially, humanization by CDR grafting involves recombining only the CDRs of
a non-human antibody onto a human le region framework and a human constant
region. Theoretically, this should substantially reduce or eliminate immunogenicity (except if
allotypic or idiotypic differences exist). However, it has been reported that some framework
residues of the original antibody also may need to be preserved (Reichmann er a/., ,
332:323 (1988); Queen et al., Proc. Natl. Acad. Sci. USA, 86:10,029 (1989)).
The framework residues that need to be preserved are amenable to identification
through computer modeling. Alternatively, critical framework residues can potentially be
identified by comparing known antigen-binding site structures n, Molec. Immunol.,
3 1(3): 169-2 7 (1994), incorporated herein by reference).
The residues that potentially affect n binding fall into several groups. The
first group comprises residues that are contiguous with the antigen site surface, which could
therefore make direct t with antigens. These residues include the amino-terminal
residues and those adjacent to the CDRs. The second group includes residues that could
alter the structure or relative alignment of the CDRs, either by contacting the CDRs or
another peptide chain in the antibody. The third group comprises amino acids with buried
side chains that could influence the structural integrity of the le domains. The residues
in these groups are usually found in the same ons (Padlan, 1994, supra) although their
positions as identified may differ depending on the numbering system (see Kabat et al.,
"Sequences of proteins of immunological interest, 5th ed., Pub. No. 91-3242, U.S. Dept.
Health & Human Services, NIH, Bethesda, Md., 1991).
Although the embodiments described herein involve the humanization of SMIP,
SCORPION, and Interceptor molecules, and not antibodies, knowledge about humanized
antibodies in the art is applicable to the polypeptides ing to the invention.
B . Hinge Region
In certain embodiments, a hinge is a wild-type human immunoglobulin hinge
. In certain other embodiments, one or more amino acid residues can be added at the
amino- or carboxyl-terminus of a wild type immunoglobulin hinge region as part of a fusion
protein construct design. For example, onal on amino acid residues at the hinge
amino-terminus can be "RT," "RSS," "TG," or "T," or at the hinge carboxyl-terminus can be
"SG", or a hinge deletion can be combined with an addition, such as D R with "SG" added at
the carboxyl-terminus.
In certain embodiments, a hinge is an altered globulin hinge in which one
or more cysteine residues in a wild type immunoglobulin hinge region is substituted with one
or more other amino acid residues (e.g., serine or alanine).
Exemplary altered immunoglobulin hinges include an immunoglobulin human lgG1
hinge region having one, two or three cysteine residues found in a wild type human lgG1
hinge tuted by one, two or three different amino acid residues (e.g., serine or e).
An altered immunoglobulin hinge can additionally have a proline substituted with another
amino acid (e.g., serine or alanine). For example, the above-described altered human lgG1
hinge can onally have a proline located carboxyl-terminal to the three cysteines of wild
type human lgG1 hinge region substituted by another amino acid e (e.g., serine,
alanine). In one embodiment, the prolines of the core hinge region are not substituted.
In certain embodiments, a hinge polypeptide comprises or is a ce that is at
least 80%, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%,
at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least
93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identical to a wild type immunoglobulin hinge region, such as a wild type human lgG1 hinge,
a wild type human lgG2 hinge, or a wild type human lgG4 hinge.
In further embodiments, a hinge present in a PSMA-binding polypeptide can be a
hinge that is not based on or derived from an immunoglobulin hinge (i.e., not a wild-type
immunoglobulin hinge or an altered immunoglobulin hinge). Examples for such hinges
include peptides of about five to about 150 amino acids derived from an interdomain region
of a transmembrane protein or stalk region of a type I I C-lectin, for instance, es of
about eight to 25 amino acids and peptides of about seven to 18 amino acids.
In certain embodiments, interdomain or stalk region hinges have seven to 18 amino
acids and can form an a-helical coiled coil structure. In certain ments, interdomain or
stalk region hinges contain 0, 1, 2 , 3 , or 4 cysteines. Exemplary interdomain or stalk region
hinges are peptide fragments of the interdomain or stalk regions, such as ten to 150 amino
acid fragments from the stalk regions of CD69, CD72, CD94, NKG2A and NKG2D.
In certain embodiments, hinge sequences have about 5 to 150 amino acids, 5 to 10
amino acids, 10 to 20 amino acids, 20 to 30 amino acids, 30 to 40 amino acids, 40 to 50
amino acids, 50 to 60 amino acids, 5 to 60 amino acids, 5 to 40 amino acids, 8 to 20 amino
acids, or 10 to 15 amino acids. The hinge can be primarily flexible, but can also provide
more rigid characteristics or can n primarily a-helical structure with minimal b-sheet
structure. The lengths or the sequences of the hinges can affect the binding affinities of the
g domains to which the hinges are directly or indirectly (via another region or domain,
such as an dimerization domain) connected as well as one or more activities of the Fc
region portions to which the hinges are directly or indirectly connected.
In certain ments, hinge sequences are stable in plasma and serum and are
resistant to proteolytic cleavage. The first lysine in the lgG1 upper hinge region can be
mutated to minimize proteolytic cleavage, for instance, the lysine can be substituted with
methionine, threonine, e or glycine, or is deleted.
In some embodiments of the invention, the PSMA-binding polypeptide is capable of
forming a dimer with a second polypeptide chain and comprises a hinge region (a)
immediately amino-terminal to an immunoglobulin constant region (e.g., amino-terminal to a
CH2 domain wherein the immungobloubolin nt region includes CH2 and CH3
domains, or amino-terminal to a CH3 domain wherein the immunoglobulin sub-regions
includes CH3 and CH4 domains), (b) interposed n and connecting a binding domain
(e.g., scFv) and a immunoglobulin heterodimerization domain, (c) interposed between and
connecting a immunoglobulin heterodimerization domain and an globulin constant
region (e.g., wherein the immunoglobulin constant region includes CH2 and CH3 domains or
CH3 and CH4 domains), (d) interposed between and connecting an immunoglobulin
constant region and a binding domain, (e) at the amino-terminus of a polypeptide chain, or
(f) at the carboxyl-terminus of a polypeptide chain. A polypeptide chain sing a hinge
region as described herein will be capable of associating with a different polypeptide chain to
form a heterodimeric n provided herein, and the heterodimer formed will contain a
binding domain that retains its target specificity or its specific target binding affinity.
[0 7] certain embodiments, a hinge present in a polypeptide that forms a heterodimer
with another polypeptide chain can be a n immunoglobulin hinge, such as a wild-type
immunoglobulin hinge region or a n altered immunoglobulin hinge region thereof In certain
embodiments, a hinge of one ptide chain of a heterodimeric protein is identical to a
corresponding hinge of the other polypeptide chain of the heterodimer. In certain other
embodiments, a hinge of one chain is different from that of the other chain (in their length o r
sequence). The different hinges in the different chains allow different manipulation of the
binding affinities of the binding domains to which the hinges are connected, so that the
heterodimer is able to preferentially bind to the target of one g domain over the target
of the other binding . For example, in certain embodiments, a heterodimeric protein
has a CD3- o r TCR-binding domain in one chain and a PSMA-binding domain in another
chain. Having two different hinges in the two chains may allow the heterodimer to bind to
the PSMA first, and then to a CD3 or other TCR component second. Thus, the heterodimer
may recruit CD3 + T cells to PSMA-expressing cells (e.g., xpressing tumor cells),
which in turn may damage o r destroy the xpressing cells.
[01 48] Exemplary hinge regions suitable for use in accordance with the present invention
are shown in the Tables 1 and 2 below. Additional exemplary hinge regions are set forth in
SEQ ID NOs: 241 -244, 601 , 78, 763-791 , 228, 379-434, 6 18-749 of WO201 1/090762 (said
ces incorporated by reference herein).
Table 1 : Exemplary hinge regions
Hinge Region Amino Acid Sequence SEQ D NO
sss(s)-hlgG1 hinge EPKSSDKTHTSPPSS SEQ ID NO:88
csc(s)-hlgG1 hinge j EPKSCDKTHTSPPCS SEQ ID NO:89
ssc(s)-hlgG1 hinge EPKSSDKTHTSPPCS SEQ ID NO:90
-hlgG1 hinge EPKSSDKTHTCPPCS SEQ ID NO:91
css(s)-hlgG1 hinge EPKSCDKTHTSPPSS SEQ ID NO:92
scs(s)-hlgG1 hinge EPKSSDKTHTCPPSS SEQ ID NO:93
ccc(s)-hlgG1 hinge EPKSCDKTHTSPPCS SEQ D NO:94
-hlgG1 hinge EPKSCDKTHTSPPCP SEQ D NO:95
sss(p)-hlgG1 hinge KTHTSPPSP SEQ ID NO:96
csc(p)-hlgG1 hinge EPKSCDKTHTSPPCP SEQ ID NO:97
ssc(p)-hlgG1 hinge EPKSSDKTHTSPPCP SEQ ID NO:98
scc(p)-hlgG1 hinge EPKSSDKTHTCPPCP SEQ ID NO:99
css(p)-hlgG1 hinge EPKSCDKTHTSPPSP SEQ ID NO:100
scs(p)-hlgG1 hinge EPKSSDKTHTCPPSP SEQ ID NO:1 0 1
Scppcp SCPPCP SEQ ID NO: 102
STD1 NYGGGGSGGGGSGGGGSGNS SEQ ID NO:1 03
Table 2 : Ex p ar hinge regions (derived fro 7 hinge,
, or snterdo a region of a type transmembrane p
SEQ D NO:1 49
SEQ ID NO:1 50
SEQ ID NO:151
C. Immunoglobulin Heterodimerization Domains
In certain embodiments, a PSMA-binding ptide or protein of the invention
can comprise an "immunoglobulin dimerization domain" or "immunoglobulin
heterodimerization domain."
A n "immunoglobulin dimerization domain" or "immunoglobulin heterodimerization
domain," as used herein, refers to an immunoglobulin domain of a polypeptide chain that
entially interacts or ates with a different immunoglobulin domain of another
polypeptide chain, wherein the ction of the different globulin dimerization
s substantially contributes to or efficiently promotes heterodimerization of the first and
second polypeptide chains (i.e., the formation of a dimer between two different polypeptide
chains, which is also referred to as a "heterodimer" or odimeric protein"). The
ctions between globulin heterodimerization domains "substantially contributes
to or efficiently promotes" the dimerization of first and second polypeptide chains if
there is a statistically significant reduction in the dimerization between the first and second
polypeptide chains in the absence of the immunoglobulin heterodimerization domain of the
first polypeptide chain and/or the immunoglobulin heterodimerization domain of the second
polypeptide chain. In certain embodiments, when the first and second polypeptide chains
are co-expressed, at least 60%, at least about 60% to about 70%, at least about 70% to
about 80%, at least 80% to about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or
99% of the first and second polypetpide chains form heterodimers with each other.
Representative immunoglobulin heterodimerization domains e an immunoglobulin CH1
domain, an immunoglobulin CL1 domain (e.g., C K or C isotypes), or derivatives thereof,
including wild-type immunoglobulin CH and CL domains and altered (or mutated)
immunoglobulin CH1 and CL domains, such as provided herein.
[01 5 1] Dimerization/heterodimerization domains can be used where it is desired to form
heterodimers from two non-identical polypeptide chains, where one or both polypeptide
chains comprises a binding domain. In certain embodiments, one polypeptide chain
member of certain heterodimers described herein does not contain a g domain. As
indicated above, a heterodimeric n of the present sure comprises an
immunoglobulin heterodimerization domain in each polypeptide chain. The immunoglobulin
heterodimerization domains in the polypeptide chains of a heterodimer are different from
each other and thus can be differentially modified to facilitate heterodimerization of both
chains and to minimize homodimerization of either chain. As shown in the examples,
immunoglobulin heterodimerization domains provided herein allow for efficient
heterodimerization between different polypeptides and facilitate purification of the resulting
heterodimeric protein.
[01 52] As provided herein, globulin heterodimerization domains useful for
ing heterodimerization of two different single chain ptides (e.g., one short and
one long) according to the present disclosure include immunoglobulin CH1 and CL domains,
for instance, human CH1 and CL domains. In certain embodiments, an immunoglobulin
heterodimerization domain is a wild-type CH1 domain, such as a wild type lgG1 , lgG2, lgG3,
lgG4, lgA1, lgA2, IgD, IgE, or IgM CH1 domain. In further embodiments, an immunoglobulin
heterodimerization domain is a wild-type human lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, IgD,
IgE, or IgM CH1 domain as set forth in SEQ ID NOS: 114 , 186-1 92 and 194, respectively, of
PCT Publication No. WO201 1/090762 (said ces incorporated by reference herein).
In certain embodiments, an immunoglobulin heterodimerization domain is a wild-type human
lgG 1 CH1 domain as set forth in SEQ ID NO: 1 4 of WO201 62 (said sequence
incorporated by reference herein).
[01 53] In further embodiments, an immunoglobulin heterodimerization domain is an
altered immunoglobulin CH1 , such as an altered lgG 1, lgG2, lgG3, lgG4, lgA1 , lgA2
IgD, IgE, or IgM CH1 domain. In certain embodiments, an immunoglobulin
heterodimerization domain is an altered human lgG 1, lgG2, lgG3, lgG4, lgA1 , lgA2, IgD,
IgE, or IgM CH1 domain. In still further embodiments, a cysteine residue of a wild-type CH1
domain (e.g., a human CH1 ) ed in forming a disulfide bond with a wild type
immunoglobulin CL domain (e.g., a human CL) is deleted or substituted in the altered
immunoglobulin CH1 domain such that a disulfide bond is not formed between the altered
CH1 domain and the wild-type CL domain.
[0 54] In certain embodiments, an globulin heterodimerization domain is a wild-
type CL domain, such as a wild type C domain or a wild type CA domain. In certain
embodiments, an immunoglobulin heterodimerization domain is a wild type human C K or
human CA domain as set forth in SEQ D NOS: 112 and 113 , respectively, of
WO201 2 (said sequences incorporated by reference herein). In further
embodiments, an immunoglobulin heterodimerization domain is an altered immunoglobulin
CL domain, such as an altered C K or CA domain, for instance, an altered human C K or
human CA domain.
[01 55] In certain embodiments, a cysteine residue of a wild-type CL domain (e.g. , a
human CL) involved in forming a disulfide bond with a wild type immunoglobulin CH1 domain
(e.g., a human CH1) is deleted or substituted in the altered immunoglobulin CL domain.
Such altered CL domains can further comprise an amino acid deletion at their amino-termini.
An ary C K domain is set forth in SEQ ID NO: 14 1 of WO20 11/090762 (said sequence
orated by nce ), in which the first arginine and the last cysteine of the wild
type human Ck domain are both deleted. In certain embodiments, only the last cysteine of
the wild type human Ck domain is deleted in the altered Ck domain because the first
arginine deleted from the wild type human Ck domain can be provided by a linker that has
an arginine at its carboxyl-terminus and links the amino-terminus of the altered Ck domain
with another domain (e.g., an immunoglobulin sug-region, such as a sub-region comprising
immunoglobulin CH2 and CH3 domains). An ary C A domain is set forth in SEQ ID
NO: 140 of WO20 11/090762 (said sequence incorporated by nce herein), in which the
first arginine of a wild type human C domain is deleted and the cysteine involved in forming
a disulfide bond with a cysteine in a CH1 domain is substituted by a .
[01 56] In further ments, an immunoglobulin heterodimerization domain is an
altered C K domain that contains one or more amino acid substitutions, as compared to a wild
type C K domain, at positions that may be involved in forming the interchain-hydrogen bond
network at a CK-CK interface. For example, in certain embodiments, an immunoglobulin
heterodimerization domain is an altered human C K domain having one or more amino acids
at positions N29, N30, Q52, V55, T56, S68 or T70 that are substituted with a different amino
acid. The numbering of the amino acids is based on their positions in the altered human C K
sequence as set forth in SEQ ID NO:141 of WO201 62 (said sequence incorporated
by nce herein). In certain embodiments, an globulin heterodimerization
domain is an altered human C K domain having one, two, three or four amino acid
substitutions at positions N29, N30, V55, or T70. The amino acid used as a substitute at the
above-noted positions can be an alanine, or an amino acid residue with a bulk side chain
moiety such as arginine, phan, tyrosine, glutamate, glutamine, or lysine. onal
amino acid residues that can be used to tute amino acid residues of the wild type
human Ck sequence at the above noted positions (e.g., N30) include aspartate, methionine,
serine and phenyalanine. Exemplary altered human C K domains are set forth in SEQ ID
NOS:142-178 of WO20 11/090762 (said sequences incorporated by reference herein).
Altered human C K domains are those that tate heterodimerization with a CH1 domain,
but minimize homodimerization with another C K domain. Representative d human C K
s are set forth in SEQ ID NOS:160 (N29W V55A T70A), 161 (N29Y V55A T70A), 202
(T70E N29A N30A V55A), 167 (N30R V55A T70A), 168 (N30K V55A T70A), 170 (N30E
V55A T70A), 172 (V55R N29A N30A), 175 (N29W N30Y V55A T70E), 176 (N29Y N30Y
V55A T70E), 177 (N30E V55A T70E), 178 (N30Y V55A T70E), 838 (N30D V55A T70E), 839
(N30M V55A T70E), 840 (N30S V55A T70E), and 841 (N30F V55A T70E) of
WO20 11/090762 (said sequences incorporated by reference herein).
[01 57] In n embodiments, in addition to or alternative to the mutations in Ck domains
described herein, both the immunoglobulin heterodimerization domains (i.e., immunoglobulin
CH1 and CL domains) of a polypeptide heterodimer have mutations so that the resulting
immunoglobulin heterodimerization domains form salt bridges (i.e., ionic interactions)
n the amino acid residues at the mutated sites. For example, the immunoglobulin
heterodimerization domains of a polypeptide heterodimer can be a mutated CH1 domain in
combination with a mutated Ck domain. In the mutated CH1 domain, valine at position 68
(V68) of the wild type human CHI domain is tuted by an amino acid residue having a
negative charge (e.g., aspartate or glutamate), whereas leucine at position 29 (L29) of a
mutated human Ck domain in which the first arginine and the last ne have been
deleted is substituted by an amino acid residue having a positive charge (e.g. , lysine,
arginine or histidine). The charge-charge interaction between the amino acid residue having
a negative charge of the resulting mutated CH1 domain and the amino acid residue having a
positive charge of the resulting mutated Ck domain forms a salt , which stabilizes the
heterodimeric interface between the mutated CH1 and Ck domains. Alternatively, V68 of the
wild type CH1 can be substituted by an amino acid residue having a positive charge,
whereas L29 of a mutated human Ck domain in which the first arginine and the last ne
have been deleted can be substituted by an amino acid residue having a negative charge.
Exemplary mutated CH1 sequences in which V68 is substituted by an amino acid with either
a negative or positive charge are set forth in SEQ ID NOS.844 and 845 of O2011/090762
(said sequences orated by reference herein). ary mutated Ck sequences in
which L29 is substituted by an amino acid with either a negative or positive charge are set
forth in SEQ ID NOS:842 and 843 of WO201 1/090762 (said sequences incorporated by
reference herein).
[01 58] ons other than V68 of human CH1 domain and L29 of human Ck domain can
be substituted with amino acids having opposite charges to produce ionic interactions
between the amino acids in addition or alternative to the mutations in V68 of CH1 domain
and L29 of Ck domain. Such positions can be identified by any suitable method, including
random mutagenesis, analysis of the crystal structure of the CH1-Ck pair to identify amino
acid residues at the CH1-Ck interface, and further fying le positions among the
amino acid residues at the CH1-Ck interface using a set of ia (e.g., propensity to
engage in ionic interactions, proximity to a potential partner e, etc.).
[0 59] In certain embodiments, polypeptide heterodimers of the t disclosure contain
only one pair of immunoglobulin heterodimerization domains. For example, a first chain of a
polypeptide heterodimer can comprise a CH1 domain as an immunoglobulin
heterodimerization domain, while a second chain can comprise a CL domain (e.g., a C K or
CA) as an immunoglobulin heterodimerization domain. Alternatively, a first chain can
comprise a CL domain (e.g. , a C K or CA) as an immunoglobulin heterodimerization domain,
while a second chain can comprise a CH1 domain as an immunoglobulin heterodimerization
domain. As set forth herein, the immunoglobulin heterodimerization domains of the first and
second chains are capable of associating to form a heterodimeric protein of this disclosure.
[01 60] In certain other ments, heterodimeric proteins of the present disclosure can
have two pairs of immunoglobulin heterodimerization s. For example, a first chain of
a heterodimer can comprise two CH1 domains, while a second chain can have two CL
domains that associate with the two CH1 domains in the first chain. Alternatively, a first
chain can comprise two CL domains, while a second chain can have two CH1 domains that
associate with the two CL domains in the first chain. In certain embodiments, a first
polypeptide chain comprises a CH1 domain and a CL domain, while a second ptide
chain comprises a CL domain and a CH1 domain that associate with the CH1 domain and
the CL domain, respectively, of the first polypeptide chain.
In the embodiments where a heterodimeric n comprises only one
heterodimerization pair (i.e., one immunoglobulin heterodimerization domain in each ,
the immunoglobulin heterodimerization domain of each chain can be located amino-terminal
to the immunoglobulin constant region of that chain. Alternatively, the globulin
dimerization domain in each chain can be located carboxyl-terminal to the
immunoglobulin constant region of that chain.
In the embodiments where a heterodimeric protein comprises two
heterodimerization pairs (i.e., two immunoglobulin heterodimerization domains in each
chain), both immunoglobulin heterodimerization domains in each chain can be located
amino-terminal to the immunoglobulin constant region of that chain. Alternatively, both
immunoglobulin heterodimerization domains in each chain can be located yl-terminal
to the immunoglobulin constant region of that chain. In further embodiments, one
immunoglobulin heterodimerization domain in each chain can be located amino-terminal to
the immunoglobulin constant region of that chain, while the other immunoglobulin
heterodimerization domain of each chain can be located carboxyl-terminal to the
immunoglobulin constant region of that chain. In other words, in those embodiments, the
immunoglobulin constant region is interposed between the two immunoglobulin
heterodimerization domains of each chain.
D. Immunoglobulin Constant regions
As indicated herein, in certain embodiments, PSMA-binding polypeptides of the
present disclosure (e.g., SMIP, PIMS, SCORPION, and Interceptor molecules) comprise an
immunoglobulin constant region (also referred to as an constant region) in each ptide
chain. The ion of an immunoglobulin nt region slows clearance of the
homodimeric and heterodimeric proteins formed from two PSMA-binding polypeptide chains
from circulation after administration to a subject. By mutations or other alterations, an
immunoglobulin constant region further enables relatively easy modulation of c
ptide or functions (e.g., ADCC, ADCP, CDC, complement fixation, and binding to
Fc receptors), which can either be sed or decreased depending on the disease being
treated, as known in the art and described herein. In certain embodiments, an
immunoglobulin nt region of one or both of the polypeptide chains of the polypeptide
homodimers and heterodimers of the present sure will be capable of mediating one or
more of these effector functions In other embodiments, one or more of these effector
functions are reduced or absent in an immunoglobulin constant region of one or both of the
polypeptide chains of the polypeptide homodimers and heterodimers of the present
disclosure, as compared to a corresponding ype immunoglobulin constant region. Fo
example, for dimeric inding polypeptides designed to elicit RTCC, such as, e.g., via
the inclusion of a CD3-binding domain, an immunoglobulin constant region preferably has
reduced or no effector function relative to a corresponding wild-type immunoglobulin
constant region.
An immunoglobulin constant region present in PSMA binding polypeptides of the
present disclosure can comprise of or is derived from part or all of: a CH2 domain, a CH3
domain, a CH4 domain, or any combination thereof. For e, an globulin
constant region can comprise a CH2 domain, a CH3 domain, both CH2 and CH3 domains,
both CH3 and CH4 domains, two CH3 s, a CH4 domain, two CH4 domains, and a
CH2 domain and part of a CH3 domain.
A CH2 domain that can form an immunoglobulin constant region of a PSMA-
g polypeptide of the t disclosure can be a wild type immunoglobulin CH2
domain or an altered immunoglobulin CH2 domain thereof from certain immunoglobulin
classes or subclasses (e.g., lgG1, lgG2, lgG3, lgG4, lgA1, lgA2, or IgD) and from various
species (including human, mouse, rat, and other mammals).
In certain embodiments, a CH2 domain is a wild type human immunoglobulin CH2
domain, such as wild type CH2 domains of human lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, or
IgD, as set forth in SEQ ID NOS:1 15, 199-201 and 195-197, respectively, of PCT Publication
WO201 1/090762 (said sequences incorporated by reference herein). In certain
embodiments, the CH2 domain is a wild type human lgG1 CH2 domain as set forth in SEQ
ID NO:1 15 of WO20 11/090762 (said sequence incorporated by reference herein).
In certain embodiments, a CH2 domain is an altered immunoglobulin CH2 region
(e.g., an d human lgG1 CH2 domain) that comprises an amino acid substitution at the
asparagine of on 297 (e.g., asparagine to alanine). Such an amino acid substitution
reduces or eliminates glycosylation at this site and tes efficient Fc binding to FcyR
and C1q. The sequence of an altered human lgG1 CH2 domain with an Asn to Ala
substitution at position 297 is set forth in SEQ ID NO:324 of WO201 1/090782 said
(sequence incorporated by reference herein).
In certain embodiments, a CH2 domain is an altered immunoglobulin CH2 region
(e.g., an altered human lgG1 CH2 domain) that comprises at least one substitution or
deletion at positions 234 to 238. For example, an immunoglobulin CH2 region can comprise
a substitution at position 234, 235, 236, 237 or 238, positions 234 and 235, ons 234
and 236, positions 234 and 237, positions 234 and 238, positions 234-236, positions 234,
235 and 237, positions 234, 236 and 238, positions 234, 235, 237, and 238, positions 236-
238, or any other combination of two, three, four, or five amino acids at positions 8.
In on or alternatively, an altered CH2 region can comprise one or more (e.g., two,
three, four or five) amino acid deletions at ons 234-238, for instance, at one of position
236 or position 237 while the other position is substituted. The above-noted mutation(s)
decrease or eliminate the dy-dependent cell-mediated cytotoxicity (ADCC) activity or
Fc receptor-binding capability of a polypeptide heterodimer that comprises the altered CH2
domain. In certain embodiments, the amino acid residues at one or more of positions 234-
238 has been replaced with one or more alanine residues. In r embodiments, only one
of the amino acid residues at positions 234-238 have been deleted while one or more of the
remaining amino acids at positions 234-238 can be tuted with another amino acid
(e.g., e or serine).
In certain other embodiments, a CH2 domain is an altered globulin CH2
region (e.g., an altered human lgG1 CH2 ) that ses one or more amino acid
substitutions at positions 253, 310, 318, 320, 322, and 331. For example, an
immunoglobulin CH2 region can comprise a tution at position 253, 3 0, 318, 320, 322,
or 331 , positions 318 and 320, positions 318 and 322, positions 318, 320 and 322, or any
other combination of two, three, four, five or six amino acids at ons 253, 310, 318, 320,
322, and 331. The above-noted mutation(s) decrease or eliminate the complementdependent
cytotoxicity (CDC) of a polypeptide heterodimer that comprises the altered CH2
domain.
In certain other embodiments, in addition to the amino acid substitution at position
297, an altered CH2 region (e.g., an altered human lgG1 CH2 domain) can further comprise
one or more (e.g., two, three, four, or five) additional substitutions at positions 234-238. For
example, an immunoglobulin CH2 region can comprise a substitution at positions 234 and
297, positions 234, 235, and 297, positions 234, 236 and 297, positions 234-236 and 297,
positions 234, 235, 237 and 297, positions 234, 236, 238 and 297, positions 234, 235, 237,
238 and 297, positions 236-238 and 297, or any combination of two, three, four, or five
amino acids at positions 234-238 in addition to position 297. In addition or alternatively, an
altered CH2 region can comprise one or more (e.g., two, three, four or five) amino acid
deletions at positions 234-238, such as at on 236 or position 237. The additional
mutation(s) decreases or eliminates the antibody-dependent cell-mediated cytotoxicity
(ADCC) activity or Fc receptor-binding capability of a polypeptide heterodimer that
comprises the altered CH2 domain. In certain embodiments, the amino acid residues at one
or more of positions 234-238 have been replaced with one or more alanine residues. n
further embodiments, only one of the amino acid residues at positions 234-238 has been
d while one or more of the remaining amino acids at ons 234-238 can be
substituted with another amino acid (e.g., alanine or serine).
In certain embodiments, in addition to one or more (e.g., 2 , 3 , 4 , or 5) amino acid
substitutions at positions 234-238, a mutated CH2 region (e.g., an altered human lgG1 CH2
domain) in a fusion protein of the present disclosure can contain one or more (e.g., 2 , 3 , 4 , 5 ,
or 6) additional amino acid substitutions (e.g., tuted with e) at one or more
positions involved in complement fixation (e.g., at positions I253, H310, E318, K320, K322,
or P331). Examples of mutated immunoglobulin CH2 regions include human lgG1 , lgG2,
lgG4 and mouse lgG2a CH2 s with alanine substitutions at positions 234, 235, 237 (if
present), 318, 320 and 322. An exemplary mutated immunoglobulin CH2 region is mouse
IGHG2c CH2 region with alanine substitutions at L234, L235, G237, E318, K320, and K322.
In still further embodiments, in addition to the amino acid tution at position
297 and the additional deletion(s) or substitution(s) at positions 234-238, an altered CH2
region (e.g., an altered human lgG1 CH2 domain) can further comprise one or more (e.g.,
two, three, four, five, or six) additional substitutions at positions 253, 310, 318, 320, 322, and
331 . For example, an immunoglobulin CH2 region can comprise a (1) tution at
on 297, (2) one or more substitutions or deletions or a combination thereof at positions
234-238, and one or more (e.g., 2 , 3 , 4 , 5 , or 6) amino acid substitutions at positions I253,
H310, E318, K320, K322, and P331 , such as one, two, three substitutions at positions E318,
K320 and K322. The amino acids at the above-noted positions can be substituted by
alanine or serine.
In certain embodiments, an globulin CH2 region polypeptide comprises: (i)
an amino acid substitution at the gines of position 297 and one amino acid
substitution at position 234, 235, 236 or 237; (ii) an amino acid substitution at the asparagine
of on 297 and amino acid substitutions at two of positions 234-237; (iii) an amino acid
tution at the asparagine of position 297 and amino acid substitutions at three of
positions 234-237; (iv) an amino acid substitution at the gine of position 297, amino
acid substitutions at positions 234, 235 and 237, and an amino acid deletion at position 236;
(v) amino acid substitutions at three of positions 234-237 and amino acid substitutions at
positions 318, 320 and 322; or (vi) amino acid substitutions at three of positions 234-237, an
amino acid deletion at position 236, and amino acid substitutions at ons 3 18 , 320 and
322.
[01 74] ary altered immunoglobulin CH2 regions with amino acid substitutions at
the asparagine of position 297 include: human lgG 1 CH2 region with alanine substitutions at
L234, L235, G237 and N297 and a deletion at G236 (SEQ ID NO:325 of WO201 1/090762,
said sequence incorporated by reference herein), human lgG2 CH2 region with alanine
substitutions at V234, G236, and N297 (SEQ ID NO:326 of WO201 62, said sequence
incorporated by reference herein), human lgG4 CH2 region with alanine substitutions at
F234, L235, G237 and N297 and a deletion of G236 (SEQ ID NO:322 of WO20 11/090762,
said ce incorporated by reference herein), human lgG4 CH2 region with e
substitutions at F234 and N297 (SEQ ID NO:343 of WO20 11/090762, said sequence
incorporated by reference herein), human lgG4 CH2 region with alanine substitutions at
L235 and N297 (SEQ D NQ:344 of WO201 /090762, said sequence incorporated by
reference herein), human igG4 CH2 region with alanine substitutions at G238 and 297
(SEQ D NO:345 of VVO201 /090762, said sequence incorporated by reference herein), and
human gG4 CH2 region with alanine substitutions at G237 and N297 (SEQ D NG:346 of
WQ20 11/090762, said sequence incorporated by reference herein).
[0 75] In certain embodiments, in addition to the amino acid substitutions described
above, an altered CH2 region (e.g., an altered human igG 1 CH2 domain) can contain one or
more additional amino acid substitutions at one or more positions other than the oted
positions. Such amino acid substitutions can be conservative or nservative
amino acid substitutions. For example, in certain embodiments, P233 can be changed to
E233 in an altered lgG2 CH2 region (see, e.g., SEQ ID NO:326 of WO201 1/090762, said
sequence incorporated by reference herein). In addition or alternatively, in certain
embodiments, the altered CH2 region can contain one or more amino acid ions,
deletions, or both. The insertion(s), deletion(s) or substitution(s) can be anywhere in an
immunoglobulin CH2 region, such as at the N- or inus of a wild type immunoglobulin
CH2 region resulting from linking the CH2 region with another region (e.g., a binding domain
or an immunoglobulin heterodimerization domain) via a hinge.
[01 76] In certain embodiments, an altered CH2 region in a polypeptide of the t
disclosure comprises or is a sequence that is at least 90%, at least 9 1% , at least 92%, at
least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%
identical to a wild type globulin CH2 region, such as the CH2 region of wild type
human lgG 1, lgG2, or lgG4, or mouse lgG2a (e.g., IGHG2c).
£0177] A n altered immunoglobulin CH2 region in a PSMA-binding polypeptide of the
present disclosure can be derived from a CH2 region of various immunoglobulin s types ,
such as gG lgG2, lgG3, lgG4, !gA1 , lgA2, and IgD, from various species (including
human, mouse, rat, and other mammals). In certain embodiments, an altered
globulin CH2 region in a fusion protein of the present disclosure can be derived from
a CH2 region of human lgG1 , lgG2 or gG4, or mouse lgG2a (e.g., ), whose
sequences are set forth in SEQ ID NOS:1 5, 199, 201 , and 320 of WO20 1/090782 (said
sequences incorporated by reference herein).
[ ] In n embodiments, an altered CH2 domain is a human lgG1 CH2 domain with
alanine tutions at positions 235, 318, 320, and 322 {i.e., a human lgG1 CH2 domain
with L235A, E318A, K320A and K322A substitutions) (SEQ D NO:595 of O2011/090782,
said sequence incorporated by reference ), and optionally an N297 mutation (e.g., to
e). In certain other embodiments, an altered CH2 domain is a human lgG1 CH2
domain with alanine substitutions at positions 234, 235, 237, 318, 320 and 322 {i.e., a
human lgG1 CH2 domain with L234A, L235A, G237A, E318A, K320A and K322A
substitutions) (SEQ ID NO:596 of WO201 1/090762, said sequence incorporated by
nce herein), and optionally an N297 mutation (e.g., to alanine).
In certain embodiments, an altered CH2 domain is an altered human lgG1 CH2
domain with mutations known in the art that enhance immunological activities such as
ADCC, ADCP, CDC, complement fixation, Fc receptor binding, or any combination thereof.
The CH3 domain that can form an immunoglobulin constant region of a PSMA-
binding polypeptide of the present disclosure can be a wild type immunoglobulin CH3
domain or an altered immunoglobulin CH3 domain thereof from certain immunoglobulin
classes or sses (e.g., lgG1, lgG2, lgG3, lgG4, lgA1 , lgA2, IgD, IgE, IgM) of various
species (including human, mouse, rat, and other mammals). In certain embodiments, a CH3
domain is a wild type human immunoglobulin CH3 domain, such as wild type CH3 domains
of human lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, IgD, IgE, or IgM as set forth in SEQ ID
NOS:1 16, 208-210, 7, and 212, respectively of WO201 1/090762 (said sequences
incorporated by reference herein). In certain embodiments, the CH3 domain is a wild type
human lgG1 CH3 domain as set forth in SEQ ID NO:1 16 of WO201 1/090762 (said sequence
incorporated by reference herein). In certain embodiments, a CH3 domain is an d
human immunoglobulin CH3 domain, such as an d CH3 domain based on or derived
from a wild-type CH3 domain of human lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, IgD, IgE, or IgM
antibodies. For example, an altered CH3 domain can be a human lgG1 CH3 domain with
one or two mutations at positions H433 and N434 (positions are numbered according to EU
numbering). The mutations in such ons can be involved in complement fixation. In
certain other embodiments, an altered CH3 domain can be a human lgG1 CH3 domain but
with one or two amino acid substitutions at position F405 or Y407. The amino acids at such
positions are involved in interacting with another CH3 . In certain embodiments, an
altered CH3 domain can be an altered human lgG1 CH3 domain with its last lysine d.
The sequence of this altered CH3 domain is set forth in SEQ ID NO:761 of WO201 1/090762
(said sequence incorporated by reference herein).
In n embodiments, PSMA-binding polypeptides g a polypeptide
heterodimer comprise a CH3 pair that comprises so called "knobs-into-holes" mutations
(see, Marvin and Zhu, Acta Pharmacologica Sinica 26:649-58, 2005; Ridgway et al., n
Engineering 9:617-21, 1966). More specifically, ons can be introduced into each of
the two CH3 domains of each polypeptide chain so that the steric complementarity required
for CH3/CH3 association tes these two CH3 domains to pair with each other. For
example, a CH3 domain in one single chain polypeptide of a polypeptide heterodimer can
contain a T366W mutation (a "knob" mutation, which substitutes a small amino acid with a
larger one), and a CH3 domain in the other single chain polypeptide of the polypeptide
heterodimer can contain a Y407A mutation (a "hole" mutation, which substitutes a large
amino acid with a smaller one). Other exemplary knobs-into-holes mutations include (1) a
T366Y mutation in one CH3 domain and a Y407T in the other CH3 , and (2) a
T366W mutation in one CH3 domain and T366S, L368A and Y407V mutations in the other
CH3 domain.
The CH4 domain that can form an immunoglobulin constant region of PSMA-
binding polypeptides of the present disclosure can be a wild type immunoglobulin CH4
domain or an altered globulin CH4 domain thereof from gE or gM molecules. In
certain embodiments, the CH4 domain is a wild type human immunoglobulin CH4 domain,
such as wild type CH4 domains of human IgE and IgM molecules as set forth in SEQ ID
NOS:213 and 214, respectively, of WO20 11/090762 (said sequences incorporated by
reference herein). In certain embodiments, a CH4 domain is an altered human
immunoglobulin CH4 domain, such as an altered CH4 domain based on or derived from a
CH4 domain of human IgE or IgM molecules, which have mutations that increase or
decrease an immunological activity known to be associated with an IgE or IgM Fc region.
In certain embodiments, an immunoglobulin constant region of PSMA binding
polypeptides of the present disclosure comprises a combination of CH2, CH3 or CH4
domains (i.e., more than one nt region domain ed from CH2, CH3 and CH4).
For e, the immunoglobulin constant region can comprise CH2 and CH3 domains or
CH3 and CH4 domains. In certain other embodiments, the immunoglobulin constant region
can se two CH3 domains and no CH2 or CH4 domains (i.e., only two or more CH3).
The multiple constant region domains that form an immunoglobulin constant region can be
based on or derived from the same immunoglobulin molecule, or the same class or ss
globulin molecules. In certain embodiments, the immunoglobulin constant region is
an IgG CH2CH3 (e.g., IgGI CH2CH3, lgG2 CH2CH3, and lgG4 CH2CH3) and can be a
human (e.g., human IgGI , lgG2, and lgG4) . For example, in certain embodiments,
the immunoglobulin constant region comprises (1) wild type human IgGI CH2 and CH3
domains, (2) human IgGI CH2 with N297A substitution (i.e., CH2(N297A)) and wild type
human IgGI CH3, or (3) human IgGI CH2(N297A) and an altered human IgGI CH3 with the
last lysine deleted.
Alternatively, the multiple constant region domains can be based on or derived
from ent immunoglobulin molecules, or ent classes or subclasses globulin
molecules. For example, in certain embodiments, an immunoglobulin constant region
comprises both human IgM CH3 domain and human IgGI CH3 domain. The multiple
constant region domains that form an immunoglobulin constant region can be directly linked
together or can be linked to each other via one or more (e.g., about 2-10) amino acids.
Exemplary immunoglobulin constant regions are set forth in SEQ ID NOS:305-309,
321, 323, 341, 342, and 762 of WO201 1/090762 (said sequences incorporated by reference
herein).
In certain embodiments, the immunoglobulin constant regions of both PSMA-
binding ptides of a ptide homodimer or heterodimer are identical to each other.
In certain other embodiments, the immunoglobulin constant region of one polypeptide chain
of a heterodimeric protein is different from the immunoglobulin constant region of the other
polypeptide chain of the dimer. For example, one immunoglobulin constant region of
a heterodimeric protein can n a CH3 domain with a "knob" mutation, whereas the other
immunoglobulin constant region of the heterodimeric protein can contain a CH3 domain with
a "hole" mutation.
IV. Nucleic Acids. Host Cells, and Methods for Production
The ion also includes nucleic acids (e.g., DNA or RNA) encoding a PSMA-
binding polypeptide as described herein, or one or more polypeptide chains of a dimeric or
heterodimeric PSMA-binding protein as described herein. Nucleic acids of the invention
include nucleic acids having a region that is substantially identical to a polynucleotide as
listed in Table 3 , infra. In certain embodiments, a nucleic acid in ance with the
present invention has at least 80%, lly at least about 90%, and more lly at least
about 95% or at least about 98% identity to a polypeptide-encoding polynucleotide as listed
in Table 3 . Nucleic acids of the invention also include complementary nucleic acids. In
some instances, the sequences will be fully complementary (no mismatches) when aligned.
In other instances, there can be up to about a 20% mismatch in the sequences. In some
embodiments of the invention are provided nucleic acids encoding both first and second
polypeptide chains of a heterodimeric PSMA-binding protein of the invention. The c
acid sequences provided herein can be exploited using codon optimization, degenerate
sequence, silent mutations, and other DNA techniques to ze expression in a particular
host, and the t invention encompasses such sequence modifications.
Polynucleotide molecules comprising a desired polynucleotide sequence are
propagated by g the le in a vector. Viral and non-viral vectors are used,
including plasmids. The choice of plasmid will depend on the type of cell in which
propagation is desired and the purpose of propagation. Certain vectors are useful for
amplifying and making large amounts of the desired DNA sequence. Other vectors are
suitable for expression in cells in culture. Still other vectors are suitable for transfer and
expression in cells in a whole animal or person. The choice of appropriate vector is well
within the skill of the art. Many such s are available commercially. The partial or fulllength
polynucleotide is inserted into a vector typically by means of DNA ligase attachment
to a cleaved restriction enzyme site in the vector. Alternatively, the d tide
ce can be inserted by homologous recombination in vivo. Typically this is
accomplished by attaching regions of homology to the vector on the flanks of the desired
nucleotide sequence. s of homology are added by ligation of oligonucleotides, or by
polymerase chain reaction using primers comprising both the region of homology and a
portion of the desired nucleotide sequence, for example.
For expression, a expression cassette or system may be employed. To express a
nucleic acid encoding a polypeptide disclosed herein, a nucleic acid molecule encoding the
ptide, operably linked to regulatory sequences that control transcriptional expression in
an expression vector, is introduced into a host cell In addition to transcriptional regulatory
sequences, such as ers and ers, expression vectors can include translational
regulatory ces and a marker gene which is suitable for selection of cells that carry the
expression vector. The gene product encoded by a polynucleotide of the invention is
expressed in any convenient sion system, ing, for example, bacterial, yeast,
insect, amphibian and mammalian systems. In the expression vector, the polypeptideencoding
polynucleotide is linked to a regulatory ce as appropriate to obtain the
desired expression properties. These can include ers, enhancers, terminators,
operators, repressors, and rs. The promoters can be regulated (e.g., the promoter
from the steroid inducible pIND vector (Invitrogen)) or constitutive (e.g., promoters from
CMV, SV40, Elongation Factor, or LTR sequences). These are linked to the desired
nucleotide sequence using the techniques bed above for linkage to vectors. Any
techniques known in the art can be used. Accordingly, the expression vector will generally
provide a transcriptional and ational initiation , which can be inducible or
constitutive, where the coding region is operably linked under the riptional control of
the riptional initiation region, and a transcriptional and translational termination region.
[0 0] An expression cassette ("expression unit") can be uced into a variety of
vectors, e.g., plasmid, BAC, YAC, bacteriophage such as lambda, P 1, M13, etc., plant or
animal viral vectors (e.g., retroviral-based vectors, adenovirus s), and the like, where
the vectors are ly characterized by the ability to provide selection of cells comprising
the expression vectors. The vectors can provide for extrachromosomal maintenance,
ularly as plasmids or viruses, or for integration into the host chromosome. Where
extrachromosomal maintenance is d, an origin sequence is provided for the replication
of the plasmid, which can be low- or high copy-number. A wide variety of markers are
available for selection, particularly those which protect against toxins, more particularly
against antibiotics. The particular marker that is chosen is selected in accordance with the
nature of the host, where in some cases, complementation can be employed with
auxotrophic hosts. Introduction of the DNA construct can use any convenient method,
including, e.g., conjugation, bacterial transformation, calcium-precipitated DNA,
electroporation, fusion, transfection, ion with viral vectors, biolistics, and the like.
Accordingly, proteins for use within the present invention can be produced in
genetically engineered host cells according to conventional techniques. le host cells
are those cell types that can be transformed or transfected with exogenous DNA and grown
in culture, and include ia, fungal cells, and cultured higher eukaryotic cells (including
cultured cells of ellular organisms), ularly cultured mammalian cells. Techniques
for manipulating cloned DNA molecules and introducing exogenous DNA into a variety of
host cells are disclosed by Sambrook and Russell, Molecular Cloning: A Laboratory Manual
(3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2001), and Ausubel
et al., Short Protocols in Molecular Biology (4th ed., John Wiley & Sons, 1999).
For example, for recombinant expression of a homodimeric PSMA-binding protein
comprising two identical PSMA-binding polypeptides as described herein, an expression
vector will generally include a nucleic acid segment encoding the PSMA-binding polypeptide,
operably linked to a er. For recombinant expression of a heterodimeric PSMA-
binding protein, comprising different first and second polypeptide chains, the first and second
polypeptide chains can be co-expressed from separate vectors in the host cell for expression
of the entire dimeric protein. Alternatively, for the expression of heterodimeric PSMA-
binding proteins, the first and second ptide chains are co-expressed from separate
expression units in the same vector in the host cell for sion of the entire heterodimeric
protein. The expression vector(s) are transferred to a host cell by conventional techniques,
and the transfected cells are then cultured by conventional techniques to produce the
encoded polypeptide(s) to produce the corresponding PSMA-binding protein.
To direct a recombinant protein into the secretory pathway of a host cell, a
secretory signal ce (also known as a leader sequence) is provided in the expression
. The secretory signal sequence can be that of the native form of the recombinant
n, or can be derived from another secreted protein or synthesized de novo. The
secretory signal sequence is operably linked to the polypeptide-encoding DNA sequence,
i.e., the two sequences are joined in the correct reading frame and positioned to direct the
newly synthesized polypeptide into the secretory pathway of the host cell. Secretory signal
sequences are commonly positioned 5' to the DNA sequence encoding the polypeptide of
interest, although certain signal sequences can be positioned elsewhere in the DNA
sequence of interest (see, e.g., Welch et al., U.S. Patent No. 5,037,743; Holland et al., U.S.
Patent No. 5,143,830). In certain ions, a secretory signal sequence for use in
accordance with the present invention has the amino acid sequence
MEAPAQLLFLLLLWLPDTTG (SEQ ID NO:85).
Cultured mammalian cells are suitable hosts for tion of recombinant proteins
for use within the present invention. Methods for introducing exogenous DNA into
mammalian host cells e calcium phosphate-mediated transfection (Wigler et al., Cell
14:725, 1978; Corsaro and n, Somatic Cell Genetics 7:603, 1981 : Graham and Van
der Eb, Virology 52:456, 1973), electroporation (Neumann e a/., EMBO J. 1:841-845, 1982),
DEAE-dextran ed transfection el et al., supra), and liposome-mediated
transfection (Hawley-Nelson e a/., Focus 15:73, 1993; Ciccarone e a/., Focus 15:80, 1993).
The production of recombinant ptides in cultured mammalian cells is disclosed by, for
example, Levinson e a/., U.S. Patent No. 4,713,339; Hagen er a/., U.S. Patent No.
4,784,950; Palmiter er al., U.S. Patent No. 4,579,821 ; and Ringold, U.S. Patent No.
4,656,134. Examples of suitable mammalian host cells include African green monkey kidney
cells (Vero; ATCC CRL 1587), human embryonic kidney cells (293-HEK; ATCC CRL 1573),
baby hamster kidney cells (BHK-21, BHK-570; ATCC CRL 8544, ATCC CRL 10314), canine
kidney cells (MDCK; ATCC CCL 34), Chinese hamster ovary cells 1 ; ATCC CCL61 ;
CHO DG44; CHO DXB1 1 (Hyclone, Logan, UT); see also, e.g., Chasin et a!, Som. Cell.
Molec. Genet. 12:555, 1986)), rat pituitary cells (GH1 ; ATCC CCL82), HeLa S3 cells (ATCC
CCL2.2), rat hepatoma cells (HII-E; ATCC CRL 1548) SV40-transformed monkey kidney
cells ; ATCC CRL 1650) and murine embryonic cells (NIH-3T3; ATCC CRL 1658).
Additional suitable cell lines are known in the art and available from public depositories such
as the an Type Culture tion, Manassas, Virginia. Strong transcription
promoters can be used, such as promoters from SV-40 or cytomegalovirus. See, e.g., U.S.
Patent No. 288. Other suitable promoters include those from metallothionein genes
(U.S. Patents Nos. 4,579,821 and 4,601,978) and the adenovirus major late promoter.
Drug selection is generally used to select for cultured mammalian cells into which
foreign DNA has been inserted. Such cells are commonly referred to as "transfectants."
Cells that have been cultured in the presence of the selective agent and are able to pass the
gene of interest to their progeny are referred to as "stable ectants." Exemplary
selectable markers e a gene ng resistance to the antibiotic neomycin, which
allows selection to be carried out in the ce of a neomycin-type drug, such as G-418 or
the like; the gpt gene for xanthine-guanine phosphoribosyl transferase, which permits host
cell growth in the presence of mycophenolic acid/xanthine; and markers that provide
resistance to zeocin, bleomycin, blastocidin, and hygromycin (see, e.g., Gatignol et al., Mol.
Gen. Genet. 207:342, 1987; Drocourt et al., Nucl. Acids Res. 9, 1990). ion
s can also be used to increase the expression level of the gene of interest, a process
referred to as "amplification." Amplification is carried out by culturing transfectants in the
presence of a low level of the selective agent and then sing the amount of selective
agent to select for cells that produce high levels of the products of the introduced genes. An
exemplary amplifiable selectable marker is dihydrofolate reductase, which confers resistance
to methotrexate. Other drug resistance genes (e.g., hygromycin resistance, multi-drug
resistance, puromycin transferase) can also be used.
Other higher eukaryotic cells can also be used as hosts, including insect cells, plant
cells and avian cells. The use of Agrobacterium rhizogenes as a vector for expressing
genes in plant cells has been reviewed by Sinkar et al., J. Biosci. (Bangalore) 11:47-58,
1987. Transformation of insect cells and production of foreign polypeptides therein is
disclosed by Guarino et al., U.S. Patent No. 5,162,222 and WIPO publication WO 94/06463.
Insect cells can be infected with recombinant baculovirus, commonly derived from
Autographa californica nuclear polyhedrosis virus ). See King and Possee, The
virus Expression System: A Laboratory Guide (Chapman & Hall, London); O'Reilly et
al., virus Expression Vectors: A Laboratory Manual (Oxford University Press., New
York 1994); and Baculovirus Expression Protocols. Methods in Molecular Biology
(Richardson ed., Humana Press, Totowa, NJ, 1995). inant baculovirus can also be
produced through the use of a transposon-based system described by Luckow et al. (J.
Virol. 67:4566-4579, 1993). This , which utilizes transfer vectors, is commercially
available in kit form (BAC-TO-BAC kit; Life Technologies, Gaithersburg, MD). The transfer
vector (e.g., AC1 ; Life Technologies) contains a Tn7 transposon to move the DNA
encoding the protein of interest into a baculovirus genome maintained in £ coli as a large
plasmid called a "bacmid." See Hill-Perkins and Possee, J. Gen. Virol. 7 976, 1990;
Bonning et a/., J. Gen. Virol. 75:1551-1556, 1994; and Chazenbalk and Rapoport, J. Biol.
Chem. 270:1543-1549, 1995. In addition, transfer vectors can include an in-frame fusion
with DNA encoding a polypeptide extension or affinity tag as disclosed above. Using
techniques known in the art, a transfer vector containing a protein-encoding DNA sequence
is transformed into £ coli host cells, and the cells are screened for bacmids which contain
an interrupted lacZ gene indicative of recombinant virus. The bacmid DNA containing
the recombinant baculovirus genome is isolated, using common techniques, and used to
transfect Spodoptera frugiperda cells, such as Sf9 cells. Recombinant virus that expresses
the protein or interest is subsequently produced. Recombinant viral stocks are made by
methods commonly used in the art.
For protein production, the recombinant virus is used to infect host cells, typically a
cell line d from the fall armyworm, Spodoptera frugiperda (e.g., Sf9 or Sf21 cells) or
Trichoplusia ni (e.g., HIGH FIVE cells; Invitrogen, ad, CA). See generally Glick and
Pasternak, Molecular Biotechnology, Principles & Applications of Recombinant DNA (ASM
Press, gton, D.C., 1994). See also U.S. Patent No. 435. Serum-free media
are used to grow and maintain the cells. Suitable media formulations are known in the art
and can be obtained from commercial suppliers. The cells are grown up from an inoculation
density of approximately 2-5 x 105 cells to a density of 1-2 x 106 cells, at which time a
inant viral stock is added at a licity of infection (MOI) of 0.1 to 10, more lly
near 3 . Procedures used are generally described in available laboratory manuals (see, e.g.,
King and Possee, supra; O'Reilly et ai, supra; Richardson, supra).
Fungal cells, including yeast cells, can also be used within the present ion.
Yeast species of in this regard include, e.g., Saccharomyces cerevisiae, Pichia pastoris, and
Pichia methanolica. Methods for transforming S. cerevisiae cells with exogenous DNA and
producing recombinant polypeptides therefrom are disclosed by, for example, Kawasaki,
U.S. Patent No. 4,599,31 1; Kawasaki et al., U.S. Patent No. 4,931 ,373; Brake, U.S. Patent
No. 4,870,008; Welch et al., U.S. Patent No. 5,037,743; and Murray e a/., U.S. Patent No.
4,845,075. Transformed cells are selected by phenotype determined by the selectable
marker, commonly drug ance or the ability to grow in the absence of a particular
nt (e.g., leucine). An exemplary vector system for use in Saccharomyces cerevisiae is
the POT1 vector system sed by Kawasaki et al. (U.S. Patent No. 4,931,373), which
allows transformed cells to be selected by growth in glucose-containing media. Suitable
promoters and terminators for use in yeast include those from glycolytic enzyme genes (see,
e.g., Kawasaki, U.S. Patent No. 4,599,31 1; Kingsman e a/., U.S. Patent No. 4,615,974; and
Bitter, U.S. Patent No. 4,977,092) and alcohol dehydrogenase genes. See also U.S.
Patents Nos. 4,990,446; 5,063,154; 5,139,936; and 4,661 ,454. Transformation systems for
other yeasts, including Hansenula rpha, Schizosaccharomyces pombe,
Kluyveromyces lactis, Kluyveromyces is, Ustilago maydis, Pichia pastoris, Pichia
methanolica, Pichia guillermondii, and Candida maltosa are known in the art. See, e.g.,
G!eeson e a/., J. Gen. Microbiol. 132:3459-3465, 1986; Cregg, U.S. Patent No. 4,882,279;
and Raymond et al., Yeast 14:1 1-23, 1998. Aspergillus cells can be utilized ing to the
methods of McKnight ef al., U.S. Patent No. 4,935,349. Methods for transforming
Acremonium chrysogenum are disclosed by Sumino et al., U.S. Patent No. 5,162,228.
s for transforming Neurospora are disclosed by Lambowitz, U.S. Patent No.
4,486,533. Production of recombinant proteins in Pichia methanolica is disclosed in U.S.
Patents Nos. 5,716,808; 5,736,383; 5,854,039; and 5,888,768.
Prokaryotic host cells, including strains of the bacteria Escherichia coli, Bacillus,
and other genera are also useful host cells within the present invention. Techniques for
transforming these hosts and expressing foreign DNA sequences cloned therein are wellknown
in the art (see, e.g., Sambrook and Russell, supra). When expressing a recombinant
protein in bacteria such as E . coli, the protein can be ed in the cytoplasm, typically as
ble es, or can be directed to the periplasmic space by a bacterial secretion
sequence. In the former case, the cells are lysed, and the granules are recovered and
denatured using, for example, guanidine isothiocyanate or urea. The denatured protein can
then be refolded and dimerized by diluting the rant, such as by dialysis against a
solution of urea and a ation of reduced and oxidized glutathione, followed by dialysis
against a buffered saline solution. In the alternative, the n can be recovered from the
cytoplasm in soluble form and isolated without the use of denaturants. The n is
recovered from the cell as an aqueous extract in, for example, phosphate buffered saline.
To capture the n of interest, the extract is applied directly to a chromatographic
medium, such as an immobilized antibody or n-Sepharose column. Secreted proteins
can be recovered from the periplasmic space in a soluble and functional form by disrupting
the cells (by, for example, sonication or osmotic shock) to release the contents of the
periplasmic space and recovering the protein, y obviating the need for denaturation
and refolding. Antibodies, including single-chain antibodies, can be produced in bacterial
host cells according to known s. See, e.g., Bird ef al., e 242:423-426, 1988;
Huston e a/., Proc. Natl. Acad. Sci. USA 85:5879-5883, 1988; and Pantoliano e a/.,
m. 30:101 17-10125, 1991.
Transformed or ected host cells are cultured according to conventional
procedures in a culture medium containing nutrients and other components required for the
growth of the chosen host cells. A variety of suitable media, including defined media and
complex media, are known in the art and generally include a carbon source, a nitrogen
source, essential amino acids, vitamins and minerals. Media can also contain such
components as growth factors or serum, as required. The growth medium will generally
select for cells containing the exogenously added DNA by, for example, drug selection or
deficiency in an essential nutrient which is complemented by the able marker carried
on the expression vector or co-transfected into the host cell.
PSMA-binding proteins are purified by tional protein purification methods,
typically by a combination of chromatographic techniques. See generally Affinity
tography: Principles & Methods (Pharmacia LKB Biotechnology, Uppsala, Sweden,
1988); Scopes, Protein Purification: Principles and Practice (Springer-Verlag, New York
1994). ns comprising an immunoglobulin Fc region can be purified by affinity
chromatography on immobilized protein A or n G . Additional purification steps, such as
gel filtration, can be used to obtain the desired level of purity or to provide for desalting,
buffer exchange, and the like.
V . Methods of Treatment
In another embodiment, the present invention provides a method for treating a
disorder characterized by overexpression of PSMA. Generally, such methods include
stering to a t in need of such treatment a therapeutically effective amount of a
PSMA-binding protein as bed herein. In some ments, the PSMA-binding
protein comprises at least one effector function ed from antibody-dependent cell-
mediated cytotoxicity (ADCC) and complement-dependent cytotoxicity (CDC), such that the
inding protein induces ADCC and/or CDC against PSMA-expressing cells in the
subject. In other embodiments, where the PSMA-binding protein comprises a second
binding domain that specifically binds a T cell (e.g., to a TCR complex or component thereof,
such as CD3s), the PSMA-binding protein induces redirected T-cell cytotoxicity (RTCC)
against PSMA-expressing cells in the subject.
In certain variations of the method, the disorder is a cancer. Exemplary s
amenable to treatment in accordance with the t invention include, for example,
prostate cancer (e.g., castrate-resistant prostate cancer), colorectal cancer, c cancer,
clear cell renal carcinoma, bladder cancer, and lung cancer. In other variations, the disorder
is a prostate disorder such as, for example, prostate cancer or benign prostatic hyperplasia
(SPH). In yet other embodiments, the disorder is an neovascular disorder such as, for
example, a cancer characterized by solid tumor growth. Exemplary cancers with tumor
atures characterized by PSMA overexpression and amenable to treatment in
accordance with the t invention e, for example, clear cell renal carcinoma
(CCRCC), colorectal , breast cancer, bladder cancer, lung cancer, a d pancreatic
cancer (see, e.g., Baccala et a/., Urology 70:385-390, 2007 (expression of PSMA in
CCRCC); L u et al., Cancer Res. 57:3829-3634, 1997 (expression of PSMA in various nonprostate
cancers, including renal, urothelial, ung, colon, breast, and adenocardnaorna to the
; and wsky e a/., J . Clin. Oncol. 25:540-547, 2007 (expression in, e.g., kidney,
colon, bladder, and atic cancers, and demonstration of specific targeting of tumor
vasculature in humans using an anti-PSMA mAb).
In each of the embodiments of the treatment methods described herein, the PSMA-
binding protein is delivered in a manner consistent with conventional methodologies
associated with ment of the disease or disorder for which treatment is sought. In
accordance with the disclosure herein, an effective amount of the PSMA-binding protein is
administered to a subject in need of such treatment for a time and under conditions sufficient
to t or treat the disease or disorder.
Subjects for administration of PSMA-binding ns as described herein include
patients at high risk for developing a particular disorder characterized by PSMA
overexpression as well as patients presenting with an existing such disorder. lly, the
subject has been diagnosed as having the disorder for which treatment is sought. Further,
subjects can be monitored during the course of treatment for any change in the disorder
(e.g., for an increase or decrease in clinical symptoms of the disorder). Also, in some
variations, the subject does not suffer from another disorder requiring treatment that involves
targeting xpressing cells.
In prophylactic applications, pharmaceutical compositions or medicants are
administered to a patient susceptible to, or otherwise at risk of, a particular disorder in an
amount sufficient to eliminate or reduce the risk or delay the onset of the disorder. In
therapeutic ations, compositions or medicants are administered to a patient suspected
of, or already suffering from such a disorder in an amount ient to cure, or at least
partially arrest, the symptoms of the disorder and its complications. An amount te to
accomplish this is ed to as a therapeutically effective dose or amount. In both
prophylactic and therapeutic s, agents are usually administered in several dosages
until a sufficient response (e.g., inhibition of opriate angiogenesis activity) has been
achieved. Typically, the response is monitored and repeated dosages are given if the
desired response starts to fade.
To identify subject ts for treatment according to the methods of the ion,
accepted screening methods can be employed to determine risk factors ated with
specific disorders or to determine the status of an existing disorder identified in a t.
Such methods can include, for example, determining whether an individual has relatives who
have been diagnosed with a particular disorder. Screening methods can also include, for
example, conventional work-ups to determine familial status for a particular disorder known
to have a heritable component. For example, various cancers are also known to have
certain inheritable components. Inheritable components of cancers include, for e,
mutations in multiple genes that are transforming (e.g., Ras, Raf, EGFR, cMet, and others),
the presence or absence of certain HLA and killer inhibitory receptor (KIR) les, or
isms by which cancer cells are able to modulate immune ssion of cells like
NK cells and T cells, either directly or indirectly (see, e.g., Ljunggren and Malmberg, Nature
Rev. l. 7:329-339, 2007; Boyton and Altmann, Clin. Exp. Immunol. 8, 2007).
Toward this end, nucleotide probes can be routinely employed to identify individuals carrying
genetic markers ated with a particular er of interest. In addition, a wide variety
of immunological methods are known in the art that are useful to identify markers for specific
disorder. For example, various ELISA immunoassay methods are available and well-known
in the art that employ monoclonal antibody probes to detect antigens associated with specific
tumors. Screening can be implemented as indicated by known patient symptomology, age
factors, related risk factors, etc. These methods allow the clinician to routinely select
patients in need of the methods described herein for treatment. In accordance with these
methods, targeting pathological, PSMA-expressing cells can be implemented as an
independent treatment program or as a follow-up, adjunct, or coordinate treatment n
to other treatments.
For administration, the PSMA-binding protein is formulated as a ceutical
composition. A pharmaceutical composition sing a PSMA-binding protein can be
ated according to known methods to prepare pharmaceutically useful compositions,
whereby the therapeutic molecule is combined in a mixture with a pharmaceutically
acceptable carrier. A composition is said to be a "pharmaceutically acceptable carrier" if its
administration can be ted by a recipient patient. Sterile phosphate-buffered saline is
one example of a pharmaceutically acceptable carrier. Other suitable carriers are well-
known to those in the art. (See, e.g., Gennaro (ed.), Remington's Pharmaceutical Sciences
(Mack Publishing Company, 19th ed. 1995).) Formulations can r include one or more
excipients, preservatives, solubilizers, buffering agents, n to prevent protein loss on
vial surfaces, etc.
A pharmaceutical composition comprising a PSMA-binding protein is stered
to a subject in a therapeutically effective amount. According to the methods of the present
invention, a PSMA-binding protein can be administered to ts by a variety of
administration modes, including, for example, by intramuscular, subcutaneous, intravenous,
intra-atrial, intra-articular, parenteral, intranasal, ulmonary, transdermal, intrapleural,
intrathecal, and oral routes of administration. For tion and treatment purposes, an
antagonist can be administered to a subject in a single bolus ry, via continuous
delivery (e.g., continuous transdermal delivery) over an extended time period, or in a
repeated administration protocol {e.g., on an hourly, daily, or weekly basis).
[021 1] A "therapeutically effective " of a composition is that amount that produces
a statistically significant effect in amelioration of one or more symptoms of the disorder, such
as a statistically significant reduction in disease progression or a statistically significant
improvement in organ function. The exact dose will be determined by the clinician according
to accepted standards, taking into account the nature and severity of the condition to be
treated, patient , etc. Determination of dose is within the level of ordinary skill in the art.
Determination of effective dosages in this t is lly based on animal
model studies followed up by human clinical trials and is guided by determining effective
dosages and administration protocols that significantly reduce the occurrence or severity of
the subject disorder in model subjects. Effective doses of the compositions of the present
invention vary depending upon many different factors, ing means of administration,
target site, physiological state of the patient, whether the patient is human or an animal,
other medications administered, whether treatment is prophylactic or therapeutic, as well as
the specific activity of the ition itself and its ability to elicit the desired response in the
dual. Usually, the patient is a human, but in some diseases, the t can be a
nonhuman mammal. Typically, dosage regimens are adjusted to provide an optimum
therapeutic response, i.e., to optimize safety and efficacy. Accordingly, a therapeutically
effective amount is also one in which any undesired collateral effects are outweighed by the
beneficial effects of administering a PSMA-binding protein as described herein. For
administration of the PSMA-binding protein, a dosage typically ranges from about 0.1 mg to
100 mg/kg or 1 g/kg to about 50 mg/kg, and more usually 10 g to 5 mg/kg of the subject's
body weight. In more specific embodiments, an effective amount of the agent is between
about 1 g/kg and about 20 mg/kg, between about 10 pg/kg and about 10 mg/kg, or
n about 0.1 mg/kg and about 5 mg/kg. Dosages within this range can be ed by
single or le administrations, ing, e.g., multiple administrations per day or daily,
weekly, bi-weekly, or monthly administrations. For e, in certain variations, a regimen
consists of an initial administration followed by multiple, subsequent administrations at
weekly or bi-weekly intervals. Another regimen consists of an initial administration followed
by multiple, subsequent administrations at monthly or bi-monthly intervals. atively,
administrations can be on an irregular basis as indicated by monitoring clinical symptoms of
the disorder.
Dosage of the pharmaceutical composition can be varied by the attending ian
to maintain a desired concentration at a target site. For example, if an intravenous mode of
delivery is selected, local concentration of the agent in the bloodstream at the target tissue
can be between about 1-50 nanomoles of the composition per liter, sometimes between
about 1.0 nanomole per liter and 10, 15, or 25 nanomoles per liter depending on the
subject's status and projected measured se. Higher or lower concentrations can be
selected based on the mode of delivery, e.g., trans-epidermal delivery versus delivery to a
mucosal surface. Dosage should also be adjusted based on the release rate of the
administered formulation, e.g., nasal spray versus powder, sustained release oral or injected
particles, transdermal formulations, etc. To achieve the same serum concentration level, for
example, elease particles with a release rate of 5 nanomolar (under standard
conditions) would be administered at about twice the dosage of particles with a release rate
of 10 nanomolar.
Pharmaceutical compositions as described herein can also be used in the context
of combination therapy. The term nation therapy" is used herein to denote that a
subject is administered at least one therapeutically effective dose of a PSMA-binding protein
and r therapeutic agent.
For example, in the context of cancer immunotherapy, a PSMA-binding protein of
the present invention can be used in combination with chemotherapy or ion. A PSMA-
binding protein as bed herein can work in synergy with conventional types of
chemotherapy or radiation. The PSMA-binding protein can further reduce tumor burden and
allow more efficient killing by a chemotherapeutic.
Compositions of the present ion can also be used in combination with
immunomodulatory compounds ing various cytokines and co-stimulatory/inhibitory
molecules. These can e, but are not limited to, the use of cytokines that ate anti
cancer immune responses (e.g., !L-2, !L-12, or iL-21). In on, PS!vlA-binding proteins
can be combined with ts that co-stimulate various cell surface molecules found on
immune-based effector cells, such as the activation of CD137 (see Wilcox et a/., J Clin.
Invest. 109:651-9, 2002) or tion of CTLA4 (see Chambers et al., Ann. Rev. Immunol.
-94, 2001). Alternatively, PSMA-binding proteins could be used with reagents that
induce tumor cell apoptosis by interacting with TNF superfamily receptors (e.g., TRAIL-
related receptors, DR4, DR5, Fas, or CD37). (See, e.g., Takeda et a !. . J. Exp. Med.
195:161-9, 2002; Srivastava, Neoplasia 3:535-46, 2001 .) Such reagents include iigands of
TNF superfamiiy receptors, including gand- g fusions, and antibodies ic for TNF
superfamily receptors (e.g., TRAIL ligand, TRAIL ligand-lg fusions, anti-TRAIL antibodies,
and the like).
With particular regard to treatment of solid tumors, protocols for assessing
endpoints and umor activity are well-known in the art. While each protocol may define
tumor response assessments differently, the RECIST (Response evaluation Criteria in solid
tumors) criteria is currently considered to be the ended guidelines for assessment of
tumor se by the National Cancer Institute (see Therasse et a/., J. Natl. Cancer Inst.
92:205-216, 2000). According to the RECIST criteria tumor response means a reduction or
elimination of all measurable lesions or metastases. Disease is generally considered
measurable if it comprises lesions that can be accurately ed in at least one
dimension as > 20mm with conventional techniques or > 10mm with spiral CT scan with
clearly defined margins by medical photograph or X-ray, computerized axial aphy
(CT), magnetic resonance imaging (MRI), or al examination (if lesions are superficial).
Non-measurable disease means the e comprises of lesions < 20mm with conventional
techniques or < 10mm with spiral CT scan, and truly non-measurable lesions (too small to
accurately measure). Non-measureable disease includes l effusions, ascites, and
disease documented by indirect evidence.
The criteria for objective status are ed for protocols to assess solid tumor
response. Representative criteria include the following: (1) Complete Response (CR),
defined as complete disappearance of all measurable disease; no new lesions; no disease
related symptoms; no evidence of non-measurable disease; (2) Partial Response (PR)
defined as 30% decrease in the sum of the longest diameter of target lesions (3) Progressive
e (PD), d as 20% increase in the sum of the longest diameter of target lesions
or appearance of any new lesion; (4) Stable or No Response, defined as not qualifying for
CR, PR, or Progressive Disease. (See Therasse et a/., )
Additional endpoints that are accepted within the gy art include overall
survival (OS), disease-free al (DFS), objective response rate (ORR), time to
progression (TTP), and ssion-free survival (PFS) (see Guidance for Industry: Clinical
Trial nts for the Approval of Cancer Drugs and Biologies, April 2005, Center for Drug
Evaluation and Research, FDA, Rockville, D.)
Pharmaceutical compositions can be supplied as a kit comprising a container that
comprises the pharmaceutical composition as described herein. A pharmaceutical
composition can be provided, for example, in the form of an injectable solution for single or
multiple doses, or as a sterile powder that will be reconstituted before injection.
Alternatively, such a kit can include a wder ser, liquid aerosol generator, or
nebulizer for administration of a pharmaceutical composition. Such a kit can further
comprise written information on indications and usage of the pharmaceutical composition.
EXAMPLES
EXAMPLE 1: Isolation of murine variable domains from 4 and preparation of
humanized variants
Murine variable domains were cloned from hybridoma cells expressing the 107-1A4
monoclonal antibody specific for human PSMA (see Brown et al, 1998, Prostate Cancer and
Prostatic Diseases. 1: 208-215). Total RNA was isolated from the hybridoma using
RNeasy® Protect Mini kit N Inc., 74124) according to the manufacturer's instructions.
SMART™ RACE cDNA amplification kit ech Laboratories, Inc., 634914) was used to
generate 5'RACE-ready cDNA with oligo(dT) primer according to the manufacturer's
instructions. V and V regions of dy were PCR-amplified from cDNA by SMART™
H L
RACE protocol using pools of proprietary degenerate gene specific primers for ent
murine VK or VH gene families. PCR ication products were confirmed by gel
electrophoresis, and correct sized bands were isolated and cloned into pCR®2.1-TOPO ®
plasmid vector using the TOPO® TA Cloning kit ing to manufacturer's instructions
(Invitrogen Corporation). The resulting recombinant vector was transformed into TOP10 £
coli. Sequencing DNA from clones revealed le isolates of a heavy chain region with a
murine VH1 framework with high homology (92.7%) to the murine germline framework
L17134 (Genbank), and a kappa chain region with a murine Vk16 framework with very high
homology (98.6%) to the murine germline framework AJ235936 (EMBL). Two restriction
sites - one Hindlll and one EcoRI site - were removed by neutral mutations from the DNA
coding for the parent murine kappa (light) variable domain to fy cloning into ation
mammalian sion vectors, and the native murine secretion/leader sequences were also
not used in favor of the human Vk3 leader sequence. The polynucleotide sequence of
PSMA-specific murine VH region (107-1A4) is given in SEQ ID NO:1, and the amino acid
sequence is given in SEQ ID NO:2. The polynucleotide sequence of pecific murine
VL region (107-1A4) with the restriction sites is given in SEQ ID NO:3. The polynucleotide
sequence of PSMA-specific murine VL region (107-1A4) modified to remove the restriction
sites is given in SEQ ID NO:4, and the amino acid sequence is given in SEQ ID NO:5.
DNA sequences coding for these murine scFv sequences and cassetted for
insertion into appropriate scaffolds (e.g., SMIP, SCORPION, and mono-specific or
multispecific heterodimer polypeptides) were designed. The constructs were then
synthesized by Blue Heron (Bothell, WA) and standard, restriction-digest-based cloning
ques were used to produce the gene sequences corresponding to TSC084 (SEQ ID
NO:44; amino acid ce SEQ ID NO:46), TSC085 (SEQ ID NO:36; amino acid
sequence SEQ ID NO:38), and TSC092 (SEQ ID NO:37; amino acid sequence SEQ ID
NO:39).
Humanized sequences designed h CDR grafting to human frameworks were
similarly synthesized by Blue Heron and cloned into similar vectors using restriction digests
to produce the the following gene sequences using two approaches: (A) three piece ligation
using a l/BamHI fragment, a BamHI/Xhol nt, and a destination vector cut with
HindiΊΊ/Xhol to produce the gene sequences corresponding to TSC188 (SEQ ID NO:40;
amino acid sequence SEQ ID NO:42) and TSC189 (SEQ ID NO:41 ; amino acid sequence
SEQ ID NO:43); and (B) two piece ligation using a Hindlll/Xhol fragment and a destination
vector cut with Hindlll/Xhol to produce the gene sequences corresponding to TSC192 (SEQ
ID NO:53; amino acid sequence SEQ ID NO:58), TSC193 (SEQ ID NO:54; amino acid
sequence SEQ ID , TSC194 (SEQ ID NO:48; amino acid sequence SEQ ID NO:49),
TSC195 (SEQ ID NO:55; amino acid sequence SEQ ID NO:60), TSC196 (SEQ ID NO:56;
amino acid ce SEQ ID NO:61), TSC199 (SEQ ID NO:50; amino acid sequence SEQ
ID NO:51), TSC210 (SEQ ID NO:69; amino acid sequence SEQ ID NO:70), TSC21 1 (SEQ
ID NO:71 ; amino acid ce SEQ ID NO:72), TSC212 (SEQ ID NO:73; amino acid
sequence SEQ ID NO:74), TSC213 (SEQ ID NO:75; amino acid sequence SEQ ID NO:76);
TSC249 (SEQ ID NO:77; amino acid sequence SEQ ID NO:78), TSC250 (SEQ ID NO:79;
amino acid sequence SEQ ID NO:80), TSC251 (SEQ ID NO:81 ; amino acid ce SEQ
ID NO:82), and TSC252 (SEQ ID NO:83; amino acid sequence SEQ ID NO:84); and (C) two
piece ligation using a BsrGI/EcoRI fragment and one of two destination vectors cut with
BsrGI/EcoRI to produce the gene sequences ponding to TSC295 (SEQ ID NO: 157;
amino acid sequence SEQ ID NO:158), TSC296 (SEQ ID NO:159; amino acid sequence
SEQ ID NO: 160), TSC301 (SEQ ID NO:161 ; amino acid sequence SEQ ID NO:162), and
TSC302 (SEQ ID NO:163; amino acid sequence SEQ ID NO:164). The humanized PSMA-
specific (107-1A4) VL region polynucleotide sequence is given in SEQ ID NO:22, and the
amino acid sequence is given in SEQ ID NO:23. A zed PSMA-specific (107-1A4) VH
region # 1 polynucleotide sequence is given in SEQ ID NO:24, and the amino acid ce
is given in SEQ ID NO:25. A humanized PSMA-specific (107-1A4) VH region #2
polynucleotide sequence is given in SEQ ID NO:26, and the amino acid sequence is given in
SEQ ID NO:27.
Sequences for the various cloned sequences and components are also presented
in Table 3 . Amino acid sequences given for ptide constructs (e.g,, SMIP,
SCORPION, mono- or specific heterodimeric proteins) do not include the human Vk3
leader sequence.
Table 3 : Binding Polypeptide Sequences and Components
Name tide Sequence Amino Acid j SEQ ID NOs:
Sequence (amino acid)
V -V . scFv tgggtgaagcagaacaatggagagagccttgagtggattggatattttaatcc vkqnngeslewigyfhpy (SEQ ID NO: 19)
tgattatactagatacaaccagaatttcaatggcaaggccacattgact ndytrynqnfngkatltvdk
gtagacaagtcctccagcacagcctacatgcagctcaacagcctgacatctg ssstaymqlnsltsedsafy
aggactctgcattctattactgtgcaagatcggatggttactacgatgctatgg ycarsdgyydamdywgq
actactggggtcaaggaacctcagtcaccgtctcctcaggcggcggcggaa gtsvtvssggggsggggss
gcggcggtggcggcagcagcggcggcggcggcagcgatgtccagataa ggggsdvqitqspsylaasp
cccagtctccatcttatcttgctgcatctcctggagaaaccattactattaattgc getitincrasksiskylawy
agggcaagtaagagcattagcaaatatttagcctggtatcaagagaaacctg ankllihsgstlqs
ggaaagctaataagctacttatccattctggatccactttgcaatctggaatacc gipsrfsgsgsgtdftltissle
atcaaggttcagtggcagtggatctggtacagatttcactctcaccatcagtag pedfamyycqqhieypwt
cctggagcctgaagattttgcaatgtattactgtcaacagcatattgaataccc fgggtkleikras
gtggacgttcggtggtggcaccaaactggaaattaaacgggcctcg
107-1A4 gatgtccagataacccagtctccatcttatcttgctgcatctcctggagaaacc dvqitqspsylaaspgetiti SEQ ID NO:20
VL-VH scFv attactattaattgcagggcaagtaagagcattagcaaatatttagcctggtatc ncrasksiskylawyqekp (SEQ ID NO:2 1)
aagagaaacctgggaaagctaataagctacttatccattctggatccactttgc gkankllihsgstlqsgipsr
aatctggaataccatcaaggttcagtggcagtggatctggtacagatttcactc fsgsgsgtdftltisslepedf
tcaccatcagtagcctggagcctgaagattttgcaatgtattactgtcaacagc amyycqqhieypwtfggg
atattgaatacccgtggacgttcggtggtggcaccaaactggaaattaaacg tkleikraggggsggggssg
ggccggcggcggcggaagcggcggtggcggcagcagcggcggcggcg gggseiqlqqsgpelvkpg
agatccagctgcaacagtctggacctgagctggtgaagcctggg asvkmsckasgytftdyy
gcttcagtgaagatgtcctgcaaggcttctggatacacattcactgactactac mhwvkqnngeslewigy
atgcactgggtgaagcagaacaatggagagagccttgagtggattggatatt fhpyndytrynqnihgkatl
ttaatccttataatgattatactagatacaaccagaatttcaatggcaaggccac tvdkssstaymqlns Itsed
tgtagacaagtcctccagcacagcctacatgcagctcaacagcctg safyycarsdgyydamdy
gaggactctgcattctattactgtgcaagatcggatggttactacgatg wgqgtsvtvss
ctatggactactggggtcaaggaacctcagtcaccgtctcctcg
zed gatatccagatgacccagtctccatccgccatgtctgcatctgtaggagacag diqmtqspsamsasvgdr SEQ ID NO:22
107-1A4 VL catcacttgccgggcgagtaagagcattagcaaatatttagcctggt vtitcrasksiskylawfqqk (SEQ ID NO:23)
ttcagcagaaaccagggaaagttcctaagctccgcatccattctggatctactt pgkvpklrihsgstlqsgvp
caggggtcccatctcggttcagtggcagtggatctgggacagaattt srfsgsgsgteftltisslqpe
actctcaccatcagcagcctgcagcctgaagattttgcaacttattactgtcaa dfatyycqqhieypwtfgq
cagcatattgaatacccgtggacgttcggccaagggaccaaggtggaaatc gtkveikr
aaacga
Humanized gaggtccagctggtacagtctggggctgaggtgaagaagcctggggctac , evqlvqsgaevkkpgatvk SEQ ID NO:24
107-1A4 agtgaagatctcctgcaaggcttctggatacacattcactgactactacatgca isckasgytftdyymhwv (SEQ ID NO:25)
VH#1 ctgggtgcaacaggcccctggaaaagggcttgagtggatgggatattttaat qqapgkglewmgyfhpy
ccttataatgattatactagatacgcagagaagttccagggcagagtcaccat ndytryaekfqgrvtitadts
aaccgcggacacgtctacagacacagcctacatggagctgagcagcctga tdtaymelsslrsedtavyy
gatctgaggacacggccgtgtattactgtgcaagatcggatggttactacgat i carsdgyydamdywgqg
gctatggactactggggtcaaggaaccacagtcaccgtctcctcg ttvtvss
Humanized caggtccagctggtacagtctggggctgaggtgaagaagcctggggcttca i qvqlvqsgaevkkpgasv SEQ ID NO:26
107-1A4 j gtgaaggtctcctgcaaggcttctggatacacattcactgactactacatgcac i kvsckasgytftdyymhw (SEQ ID NO:27)
VH#2 tgggtgcgacaggcccctggacaagggcttgagtggatgggatattttaatc j vrqapgqglewmgyfhp
cttataatgattatactagatacgcacagaagttccagggcagagtcaccatg yndytryaqkfqgrvtmtr
accagggacacgtctatcagcacagcctacatggagctgagcagcctgaga j dtsistaymelsslrsddtav
tctgacgacacggccgtgtattactgtgcaagatcggatggttactacgatgct j yycarsdgyydamdywg
atggactactggggtcaaggaaccacagtcaccgtctcctcg qgttvtvss
Humanized gatatccagatgacccagtctccatccgccatgtctgcatctgtaggagacag j diqmtqspsamsasvgdr SEQ ID NO:28 !
107-1A4 i agtcaccatcacttgccgggcgagtaagagcattagcaaatatttagcctggt j vtitcrasksiskylawfqqk (SE ID NO:30)
VL-VH#1 ttcagcagaaaccagggaaagttcctaagctccgcatccattctggatctactt pgkvpklrihssstlqsfvp
Name Nucleotide Sequence WmmoAcid
‘ '
Sequence
W......+cu .... ......_.__
scFv tgcaatcaggggtcccatctcggttcagtggcagtggatctgggacagaattt srfsgsgsgteftltisslqpe =
i actctcaccatcagcagcctgcagcctgaagattttgcaacttattactgtcaa cqqhieypmfgq
cagcatattgaatacccgtggacgttcggccaagggaccaaggtggaaatc gtkveikrggggsggggsg
aaacgaggtggcggagggtctgggggtggcggatccggaggtggtggct gggsevqlvqsgaevkkp
ctgaggtccagetggtacagtctggggctgaggtgaagaagcctggggcta gatvkisckasgytftdyy _
cagtgaagatctcctgcaaggcttctggatacacattcactgactactacatgc mhquqapgkglewmg
actgggtgcaacaggcccctggaaaagggcttgagtggatgggatattttaa yfnpyndytryaequgrvt
tccttataatgattatactagatacgcagagaagttccagggcagagtcaccat itadtstdtaymelsslrsedt
aaccgcggacacgtctacagacacagectacatggagctgagcagcctga avyycarsdgyydamdy ‘
gatctgaggacacggccgtgtattactgtgcaagatcggatggttactacgat wgqgttvtvss 1 .
1 .
1 .
1 .
t I
gctatggactactggggtcaaggaaccacagtcaccgtctcctcg 3
“___...HcccccccccccccccccccwWJ___...»c.ccccccccc................:
zwezl“ gatatccagatgacccagtctccatccgccatgtctgcatctgtaggagacag diqmtqspsamsasvgdr......—_........... SEQ ID NO:29
4 agtcaccatcacttgccgggcgagtaagagcattagcaaatatttagcctggt vtitcrasksiskylawquk (SEQ ID NO:31)
VL-VH#2 ttcagcagaaaccagggaaagttcctaagctccgcatccattctggatctactt pgkvpklrihsgsthsgvp
scFv tgcaatcaggggtcccatctcggttcagtggcagtggatctgggacagaattt srfsgsgsgtefiltisslqpe
actctcaccatcageagoctgcagcctgaagattttgcaacttattactgtcaa dfatyycqqhieypwtfgq
cagcatattgaatacccgtggacgttcggccaagggaccaaggtggaaatc gtkveikrggggsggggsg
1 aaacgaggtggcggagggtctgggggtggcggatccggaggtggtggct gggsqvqlvqsgaevkkp
i ctcaggtccagctggtacagtctggggctgaggtgaagaagcctggggctt sckasgytftdyy
cagtgaaggtctcctgcaaggcttctggatacacattcactgactactacatgc mhwvrqapgqglewmg
actgggtgcgacaggcccctggacaagggcttgagtggatgggatattttaa dytryaqqugrv
tccttataatgattatactagatacgcacagaagttccagggcagagtcaccat tmtrdtsistaymelsslrsd
gaccagggacacgtctatcagcacagcctacatggagctgagcagcctgag dtavyycarsdgyydamd
atctgacgacacggccgtgtattactgtgcaagatcggatggttactacgatg ngqgttvtvss
actactggggtcaaggaaccacagtcaccgtctcctcg 5
Humamzed ‘gagg‘seamigaggfgfiaagéaggggetac evqlvqsgaevkkpgatvk SW32
1071A4
‘ agtgaagatctcctgcaaggcttctggatacacattcactgactactacatgca isckasgytftdyyznhwv (SEQ ID NO:34)
VH#1-VL ctgggtgcaacaggcccctggaaaagggcttgagtggatgggatattttaat qqapgkglewmgyfnpy 5
scFv ccttataatgattatactagatacgcagagaagttccagggcagagtcaccat aequgrvtitadts
aaccgcggacacgtctacagacacagcctacatggagctgagcagcctga tdtaymelsslrsedtavyy
gatctgaggacacggccgtgtattactgtgcaagatcggatggttactacgat carsdgyydamdngqg
gctatggactactggggtcaaggaaccacagtcaccgtctcctcaggtggcg sggggsggggsgg
gagggtctgggggtggcggatccggaggtggtggctctgatatccagatga ggsdiqmtqspsamsasv
cccagtctccatccgccatgtctgcatctgtaggagacagagtcaccatcact gdrvtitcrasksiskylawf
tgccgggcgagtaagagcattagcaaatatttagcctggttlcagcagaaacc qqkpgkvpklrihsgsths ;
agggaaagttcctaagctccgcatccattctggatctactttgcaatcaggggt gvpsrfsgsgsgtefiltissl
cccatctcggttcagtggcagtggatctgggacagaatttactctcaccatca qpedfatyycqqhieypwt
gcagcctgcagcctgaagattttgcaacttattactgtcaacagcatattgaata veikras 5
§cccgtggacgttcggccaagggaccaaggtggaaatcaaacgagcctcg ‘
mfiu‘ffigii‘ize‘cim“?caggtccagctggtacagtctggggctgaggtgaagaagcctggggcttca.... ___ ___
{cc ccc.ccccccc..cc.....
qvqlvqsgaEiiickpgasv SEQlDNO33
107-1A4 gtgaaggtctcctgcaaggcrtctggatacacattcactgactactacatgcac sgytfidyymhw (SEQ 1D N0135)
VH#2-VL tgggtgcgacaggcccctggacaagggcttgagtggatgggatattttaatc vrqapgqglewmgyfnp ‘ 5
g scFv cttataatgattatactagatacgcacagaagttccagggcagagtcaccatg yndytTyaqqugrvtmtr :
accagggacacgtctatcagcacagcctacatggagctgagcagcctgaga dtsistaymelsslrsddtav
tctgacgacacggccgtgtattactgtgcaagatcggatggttactacgatgct yycarsdgyydamdng
atggactactggggtcaaggaaccacagtcaccgtctcctcaggtggcgga 3 qgttvtvssggggsggggs
gggtctgggggtggcggatccggaggtggtggctctgatatccagatgacc 3 ggggsdiqmtqspsamsa
cagtctccatccgccatgtctgcatctgtaggagacagagtcaccatcacttg
ccgggcgagtaagagcattagcaaatatttagcctggtttcagcagaaacca 3 svgdrvtitcrasksiskyla
‘ wqukpgkvpklrihsgsti
ggggaaagttcctaagctccgcatccattctggatctactttgcaatcaggggtc rfsgsgsgtefiltis
ccatctcggttcagtggcagtggatctgggacagaatttactctcaccatcag slqpedfatyycqqhieyp 5
1:cagcctgcagcctgaagattttgcaacttattactgicaacagcatattgaatac wtfgqgtkveikras
.“...“......c........__.c......._..ccccccccc‘cccccccccccccc......c..cc..c...p,,_....
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
ccgtggacgttcggccaagggaccaaggtggaaatcaaacgcgcctcg
TSC085 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac dvqitqspsylaaspgetiti SEQ ID NO:36
chimeric caccggtgatgtccagataacccagtctccatcttatcttgctgcatctcctgga ncrasksiskylawyqekp (SEQ ID NO:38)
SMIP gaaaccattactattaattgcagggcaagtaagagcattagcaaatatttagcc lihsgstlqsgipsr
e 107- tggtatcaagagaaacctgggaaagctaataagctacttatccattctggatcc fsgsgsgtdftltisslepedf
1A4 VL-VH actttgcaatctggaataccatcaaggttcagtggcagtggatctggtacagat amyycqqhieypwtfggg
scFv-human ctcaccatcagtagcctggagcctgaagattttgcaatgtattactgtc raggggsggggssg
Fc) aacagcatattgaatacccgtggacgttcggtggtggcaccaaactggaaatt gggseiqlqqsgpelvkpg
aaacgggccggcggcggcggaagcggcggtggcggcagcagcggcgg asvkmsckasgytftdyy
cggcggcagcgagatccagctgcaacagtctggacctgagctggtgaagc mhwvkqnngeslewigy
ctggggcttcagtgaagatgtcctgcaaggcttctggatacacattcactgact fhpyndytrynqnfhgkatl
actacatgcactgggtgaagcagaacaatggagagagccttgagtggattg tvdkssstaymqlnsltsed
gatattttaatccttataatgattatactagatacaaccagaatttcaatggcaag safyycarsdgyydamdy
gccacattgactgtagacaagtcctccagcacagcctacatgcagctcaaca wgqgtsvtvsssepkssdk
gcctgacatctgaggactctgcattctattactgtgcaagatcggatggttacta thtcppcpapeaagapsvfl
cgatgctatggactactggggtcaaggaacctcagtcaccgtctcctcgagt fppkpkdtlmisrtpevtcv
gagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcacctg wdvshedpevkfnwyv
aagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaaggacac dgvevhnaktkpreeqyns
cctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtgagc tyrvvsvltvlhqdwlngka
gaccctgaggtcaagttcaactggtacgtggacggcgtggaggtg yacavsnkalpapiektisk
cataatgccaagacaaagccgcgggaggagcagtacaacagcacgtaccg akgqprepqvytlppsrdel
tgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaaggc tknqvsltclvkgfypsdia
gtgcgcggtctccaacaaagccctcccagcccccatcgagaaaac vewesngqpennykttpp
catctccaaagccaaagggcagccccgagaaccacaggtgtacaccctgc vldsdgsfflyskltvdksr
ccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcctgg wqqgnvfscsvmhealhn
tcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgggc hytqkslslspgk
agccggagaacaactacaagaccacgcctcccgtgctggactccgacggc
tccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagcagg
ggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactacacg
cagaagagcctctccctgtctccgggtaaatga
TSC092 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac eiqlqqsgpelvkpgasvk SEQ ID NO:37
chimeric caccggtgagatccagctgcaacagtctggacctgagctggtgaagcctgg msckasgytftdyymhw (SEQ ID NO:39)
SMIP ggcttcagtgaagatgtcctgcaaggcttctggatacacattcactgactacta vkqnngeslewigyfhpy
(murine 107- catgcactgggtgaagcagaacaatggagagagccttgagtggattggatat ndytrynqnfhgkatltvdk
1A4 VH-VL tttaatccttataatgattatactagatacaaccagaatttcaatggcaaggcca ssstaymqlnsltsedsafy
uman cattgactgtagacaagtcctccagcacagcctacatgcagctcaacagcct ycarsdgyydamdywgq
Fc) gacatctgaggactctgcattctattactgtgcaagatcggatggttactacgat gtsvtvssggggsggggss
gctatggactactggggtcaaggaacctcagtcaccgtctcctcaggcggcg ggggsdvqitqspsylaasp
gcggcggtggcggcagcagcggcggcggcggcagcgatgtcc getitincrasks iskyla y
agataacccagtctccatcttatcttgctgcatctcctggagaaaccattactatt ankllihsgstlqs
aattgcagggcaagtaagagcattagcaaatatttagcctggtatcaagagaa gipsrfsgsgsgtdftltissle
acctgggaaagctaataagctacttatccattctggatccactttgcaatctgga pedfamyycqqhieypwt
ataccatcaaggttcagtggcagtggatctggtacagatttcactctcaccatc fgggtkleikrassepkssd
agtagcctggagcctgaagattttgcaatgtattactgtcaacagcatattgaat kthtcppcpapeaagapsv
acccgtggacgttcggtggtggcaccaaactggaaattaaacgggcctcga flfppkpkdtlmisrtpevtc
gtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcacc vvvdvshedpevkfhwy
tgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaaggac vdgvevhnaktkpreeqy
accctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtga nstyrvvsvltvlhqdwlng
gccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct dgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgk
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
tcttcctctacagcaagctcaccgtggacaagagcaggtggcagca
cgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca
cgcagaagagcctctccctgtctccgggtaaatga
TSC188 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO:40
humanized caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:42)
SMIP (107- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
1A4 VL- gtrtcagcagaaaccagggaaagttcctaagctccgcatccattctg gsgteftltisslqpe
VH#1 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc) acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt krggggsggggsg
actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsevqlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gatvkisckasgytftdyy
ggtggctctgaggtccagctggtacagtctggggctgaggtgaagaagcct apgkg lewmg
ggggctacagtgaagatctcctgcaaggcttctggatacacattcactgacta yfnpyndytryaekfqgrvt
ctacatgcactgggtgcaacaggcccctggaaaagggcttgagtggatggg itadtstdtaymelsslrsedt
atattttaatccttataatgattatactagatacgcagagaagttccagggcaga avyycarsdgyydamdy
gtcaccataaccgcggacacgtctacagacacagcctacatggagctgagc wgqgttvtvsssepkssdkt
agcctgagatctgaggacacggccgtgtattactgtgcaagatcggatggtt htcppcpapeaagapsvflf
actacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctc ppkpkdtlmisrtpevtcvv
gagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagca vdvshedpevkfhwyvd
cctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagg gvevhnaktkpreeqynst
tcatgatctcccggacccctgaggtcacatgcgtggtggtggacgt yrvvsvltvlhqdwlngka
gagccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtgga yacavsnkalpapiektisk
ggtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgt akgqprepqvytlppsrdel
accgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaa tknqvsltclvkgfypsdia
ggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgaga vewesngqpennykttpp
aaaccatctccaaagccaaagggcagccccgagaaccacaggtgtacacc vldsdgsfflyskltvdksr
ctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgc wqqgnvfscsvmhealhn
ctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaat hytqksls!spgk
gggcagccggagaacaactacaagaccacgcctcccgtgctggactccga
cggctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcag
caggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccacta
cacgcagaagagcctctccctgtctccgggtaaatga
TSC 189 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO:41
humanized caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:43)
SMIP ( 107- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt lrihsgstlqsgvp
1A4 VL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
VH#2 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc) acagaarttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac edpevkfnwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
aatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
ce (amino acid)
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgk
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca
agagcctctccctgtctccgggtaaatga
TSC084 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac dvqitqspsylaaspgetiti SEQ ID NO:44
chimeric caccggtgatgtccagataacccagtctccatcttatcttgctgcatctcctgga ncrasksiskylawyqekp (SEQ ID NO:46)
Interceptor attactattaattgcagggcaagtaagagcattagcaaatatttagcc gkankllihsgstlqsgipsr
(murine VL- tggtatcaagagaaacctgggaaagctaataagctacttatccattctggatcc fsgsgsgtdftltisslepedf
VH 107-1A4 actttgcaatctggaataccatcaaggttcagtggcagtggatctggtacagat amyycqqhieypwtfggg
scFv-Fc- ttcactctcaccatcagtagcctggagcctgaagattttgcaatgtattactgtc tkleikraggggsggggssg
CH1) aacagcatattgaatacccgtggacgttcggtggtggcaccaaactggaaatt gggseiqlqqsgpelvkpg
aaacgggccggcggcggcggaagcggcggtggcggcagcagcggcgg asvkmsckasgytftdyy
cggcggcagcgagatccagctgcaacagtctggacctgagctggtgaagc mhwvkqnngeslewigy
cttcagtgaagatgtcctgcaaggcttctggatacacattcactgact fhpyndytrynqnfhgkatl
actacatgcactgggtgaagcagaacaatggagagagccttgagtggattg tvdkssstaymqlnsltsed
gatattttaatccttataatgattatactagatacaaccagaatttcaatggcaag arsdgyydamdy
gccacattgactgtagacaagtcctccagcacagcctacatgcagctcaaca wgqgtsvtvsssepkssdk
catctgaggactctgcattctattactgtgcaagatcggatggttacta thtcppcpapeaagapsvfl
cgatgctatggactactggggtcaaggaacctcagtcaccgtctcctcgagc fppkpkdtlmisrtpevtcv
gagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcacctg vvdvshedpevkfhwyv
aagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaaggacac dgvevhnaktkpreeqyns
cctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtgagc tyrvvsvltvlhqdwlngka
cacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggaggtg yacavsnkalpapiektisk
cataatgccaagacaaagccgcgggaggagcagtacaacagcacgtaccg akgqprepqvytlppsrdel
tgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaaggc tknqvsltclvkgfypsdia
gtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaaac vewesngqpennykttpp
catctccaaagccaaagggcagccccgagaaccacaggtgtacaccctgc vldsdgsfflyskltvdksr
ccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcctgg wqqgnvfscsvmhealhn
tcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgggc hytqkslslspgksrastkg
agccggagaacaactacaagaccacgcctcccgtgctggactccgacggc psvfplapsskstsggtaalg
tccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagcagg clvkdyfpepvtvswnsga
ggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactacacg Itsgvhtfpavlqssglyslss
cagaagagcctctccctgtctccgggtaaatctagagcctccaccaagggcc sslgtqtyicnvnh
catcggtcttccccctggcaccctcctccaagagcacctctgggggcacagc kpsntkvdkkv
ggccctgggctgcctggtcaaggactacttccccgagccggtgacggtgtc
gtggaactcaggcgccctgaccagcggcgtgcacaccttcccggctgtcct
ctcaggactctactccctcagcagcgtggtgaccgtgccctccagc
ggcacccagacctacatctgcaacgtgaatcacaagcccagcaac
accaaggtggacaagaaagtttga
TSC093 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac qvqlvqsgggwqpgrslrl SEQ ID NO:45
Interceptor caccggtcaggtccagctggtgcagtctgggggcggagtggtgcagcctg sckasgytftrstmhwvrq (SEQ ID NO:47)
(Cris7 scFv- ggcggtcactgaggctgtcctgcaaggcttctggctacacctttactagatcta apgkglewigyinpssayt
FC-CKYAE) cgatgcactgggtaaggcaggcccctggaaagggtctggaatggattggat nynqkfkdrftisadkskst
acattaatcctagcagtgcttatactaattacaatcagaaattcaaggacaggtt aflqmdslrpedtgvyfcar
cacaatcagcgcagacaaatccaagagcacagccttcctgcagatggacag pqvhydyngfpywgqgt
cctgaggcccgaggacaccggcgtctatttctgtgcacggccccaagtcca pvtvssggggsggggsgg
ctatgattacaacgggtttccttactggggccaagggactcccgtcactgtctc ggsaqdiqmtqspsslsas
tagcggtggcggagggtctgggggtggcggatccggaggtggtggctctg vgdrvtmtcsasssvsymn
acatccagatgacccagtctccaagcagcctgtctgcaagcgtgg wyqqkpgkapkrwiydss
gggacagggtcaccatgacctgcagtgccagctcaagtgtaagttacatgaa klasgvparfsgsgsgtdytl
ctggtaccagcagaagcccggcaaggcccccaaaagatggatttatgactc pedfatyycqqwsr
atccaaactggcttctggagtccctgctcgcttcagtggcagtgggtctggga npptfgggtklqitrssepks
ccgactataccctcacaatcagcagcctgcagcccgaagatttcgccacttat sdkthtcppcpapeaagap
tactgccagcagtggagtcgtaacccacccacgttcggaggggggaccaa svflfppkpkdtlmisrtpe
gctacaaattacacgctcgagtgagcccaaatcttct gacaaaactcacacat vtcvvvdvshedpevkfh
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
gcccaccgtgcccagcacctgaagccgcgggtgcaccgtcagtcttcctctt wyvdgvevhnaktkpree
aaaacccaaggacaccctcatgatctcccggacccctgaggtcac qynstyrwsvltvlhqdwl
atgcgtggtggtggacgtgagccacgaagaccctgaggtcaagttcaactg ngkayacavsnkalpapie
gtacgtggacggcgtggaggtgcataatgccaagacaaagccgcgggag ktiskakgqprepqvytlpp
gagcagtacaacagcacgtaccgtgtggtcagcgtcctcaccgtcctgcacc srdeltknqvsltclvkgfyp
aggactggctgaatggcaaggcgtacgcgtgcgcggtctccaacaaagcc sdiavewesngqpennyk
ctcccagcccccatcgagaaaaccatctccaaagccaaagggcagccccg ttppvldsdgsfflyskltvd
agaaccacaggtgtacaccctgcccccatcccgggatgagctgaccaagaa ksrwqqgnvfscsvmhea
cagcctgacctgcctggtcaaaggcttctatccaagcgacatcgcc lhnhytqkslslspgksrtva
gtggagtgggagagcaatgggcagccggagaacaactacaagaccacgc apsvfifppsdeqlksgtas
ctcccgtgctggactccgacggctccttcttcctctacagcaagctcaccgtg vvcllnyfypreakvqwkv
gacaagagcaggtggcagcaggggaacgtcttctcatgctccgtgatgcat dnalqsgnsqesateqdsk
gaggctctgcacaaccactacacgcagaagagcctctccctgtctccgggta dstyslsseltlskadyekhk
aatctagaactgtggctgcaccatctgtcttcatcttcccgccatctgatgagca vyacevthqglsspvtksfh
gttgaaatctggaactgcctctgttgtgtgcctgctgaattacttctatcccaga rge
gaggccaaagtacagtggaaggtggataacgccctccaatcgggtaactcc
caggagagtgccacagagcaggacagcaaggacagcacctacagcctca
gcagcgagctgacgctgagcaaagcagactacgagaaacacaaagtctac
gcctgcgaagtcacccatcagggcctgagctcgcccgtcacaaagagcttc
aacaggggagagtga
TSC194 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac spsamsasvgdr SEQ ID NO:48
Scorpion caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:49)
(huVL- I gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH#2 107- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
1A4 scFv- actttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc-Cris7 j acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
scFv) actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt qlvqsgaevkkp
caaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta dytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga carsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg kslslspgqrhnns
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg slntgtqmaghspnsqvql
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca vqsgggvvqpgrslrlscka
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca sgytftrstmhwvrqapgk
cgcagaagagcctctccctgtctccgggtcagaggcacaacaattcttccct glewigyinpssaytnynq
gaatacaggaactcagatggcaggtcattctccgaattctcaggtccagctgg kfkdrftisadkskstaflqm
tgcagtctgggggcggagtggtgcagcctgggcggtcactgaggctgtcct dslrpedtgvyfca qvhy
gcaaggcttctggctacacctttactagatctacgatgcactgggtaaggcag ywgqgtpvtvss
gcccctggaaagggtctggaatggattggatacattaatcctagcagtgcttat ggggsggggsggggsaqd
actaattacaatcagaaattcaaggacaggttcacaatcagcgcagacaaatc iqmtqspsslsasvgdrvt
cacagccttcctgcagatggacagcctgaggcccgaggacaccg mtcsasssvsymnwyqq
gcgtctatttctgtgcacggccccaagtccactatgattacaacgggtttcctta kpgkapkrwiydssklasg
ctggggccaagggactcccgtcactgtctctagcggtggcggagggtctgg vparfsgsgsgtdytltisslq
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
gggtggcggatccggaggtggtggctctgcacaagacatccagatgaccc pedfatyycqqwsrnpptf
agtctccaagcagcctgtctgcaagcgtgggggacagggtcaccatgacct gggtklqitr
gcagtgccagctcaagtgtaagttacatgaactggtaccagcagaagcccg
gcaaggcccccaaaagatggatttatgactcatccaaactggcttctggagtc
cgcttcagtggcagtgggtctgggaccgactataccctcacaatcag
cagcctgcagcccgaagatttcgccacttattactgccagcagtggagtcgta
acccacccacgttcggaggggggaccaagctacaaattacacgataa
TSC199 gcaccagcgcagcttctcttcctcctgctactctggctcccagatac spsamsasvgdr SEQ ID NO:50
Scorpion caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:5 1)
(huVL- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH#1 107- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
1A4 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc-Cris7 acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
scFv) actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsevqlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gatvkisckasgytftdyy
ggtggctctgaggtccagctggtacagtctggggctgaggtgaagaagcct apgkglewmg
ggggctacagtgaagatctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaekfqgrvt
ctacatgcactgggtgcaacaggcccctggaaaagggcttgagtggatggg itadtstdtaymelsslrsedt
atattttaatccttataatgattatactagatacgcagagaagttccagggcaga avyycarsdgyydamdy
gtcaccataaccgcggacacgtctacagacacagcctacatggagctgagc wgqgttvtvsssepkssdkt
agcctgagatctgaggacacggccgtgtattactgtgcaagatcggatggtt htcppcpapeaagapsvflf
actacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctc ppkpkdtlmisrtpevtcvv
gagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagca vdvshedpevkfhwyvd
cctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagg gvevhnaktkpreeqynst
acaccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgt yrvvsvltvlhqdwlngka
gagccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtgga yacavsnkalpapiektisk
ggtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgt epqvytlppsrdel
tggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaa tknqvsltclvkgfypsdia
ggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgaga gqpennykttpp
aaaccatctccaaagccaaagggcagccccgagaaccacaggtgtacacc vldsdgsfflyskltvdksr
ctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgc wqqgnvfscsvmhealhn
ctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaat hytqkslslspgqrhnnssl
gggcagccggagaacaactacaagaccacgcctcccgtgctggactccga ntgtqmaghspnsqvqlv
cggctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcag qsgggwqpgrslrlsckas
caggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccacta gytftrstmhwvrqapgkg
cacgcagaagagcctctccctgtctccgggtcagaggcacaacaattcttcc inpssaytnynqk
ctgaatacaggaactcagatggcaggtcattctccgaattctcaggtccagct isadkskstaflqmd
ggtgcagtctgggggcggagtggtgcagcctgggcggtcactgaggctgt slrpedtgvyfcarpqvhyd
cctgcaaggcttctggctacacctttactagatctacgatgcactgggtaagg yngfpywgqgtpvtvssg
cctggaaagggtctggaatggattggatacattaatcctagcagtg gggsggggsggggsaqdi
cttatactaattacaatcagaaattcaaggacaggttcacaatcagcgcagac qmtqspsslsasvgdrvtm
aaatccaagagcacagccttcctgcagatggacagcctgaggcccgagga tcsasssvsymnwyqqkp
caccggcgtctatttctgtgcacggccccaagtccactatgattacaacgggrt gkapkrwiydssklasgvp
tccttactggggccaagggactcccgtcactgtctctagcggtggcggagg arfsgsgsgtdytltisslqpe
gtctgggggtggcggatccggaggtggtggctctgcacaagacatccagat dfatyycqqwsrnpptfgg
gacccagtctccaagcagcctgtctgcaagcgtgggggacagggtcaccat gtklqitr
gacctgcagtgccagctcaagtgtaagttacatgaactggtaccagcagaag
cccggcaaggcccccaaaagatggatttatgactcatccaaactggcttctg
gagtccctgctcgcttcagtggcagtgggtctgggaccgactataccctcac
aatcagcagcctgcagcccgaagatttcgccacttattactgccagcagtgg
agtcgtaacccacccacgttcggaggggggaccaagctacaaattacacga
TSC125 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac qvqlvqsgggwqpgrslrl SEQ ID NO:52
Interceptor caccggtcaggtccagctggtgcagtctgggggcggagtggtgcagcctg sckasgytftrstmhwvrq (SEQ ID NO:57)
(Cris7 scFv- ggcggtcactgaggctgtcctgcaaggcttctggctacacctttactagatcta apgkglewigyinpssayt
Fc-CHl) cgatgcactgggtaaggcaggcccctggaaagggtctggaatggattggat nynqkfkdrftisadkskst
Name e ce Amino Acid SE ID Os:
Sequence aro i ac d )
acattaatcctagcagtgcttatactaattacaatcagaaattcaaggacaggtt aflqmdslrpedtgvyfcar
cacaatcagcgcagacaaatccaagagcacagccttcctgcagatggacag pqvhydyngfpywgqgt
cctgaggcccgaggacaccggcgtctatttctgtgcacggccccaagtcca pvtvssggggsggggsgg
ttacaacgggtttccttactggggccaagggactcccgtcactgtctc ggsaqdiqmtqspsslsas
tagcggtggcggagggtctgggggtggcggatccggaggtggtggctctg vgdrvtmtcsasssvsymn
cacaagacatccagatgacccagtctccaagcagcctgtctgcaagcgtgg wyqqkpgkapkrwiydss
gggacagggtcaccatgacctgcagtgccagctcaagtgtaagttacatgaa klasgvparfsgsgsgtdytl
ctggtaccagcagaagcccggcaaggcccccaaaagatggatttatgactc tisslqpedfatyycqqwsr
atccaaactggcttctggagtccctgctcgcttcagtggcagtgggtctggga npptfgggtklqitrssepks
ataccctcacaatcagcagcctgcagcccgaagatttcgccacttat sdkthtcppcpapeaagap
tactgccagcagtggagtcgtaacccacccacgttcggaggggggaccaa svflfppkpkdtlmisrtpe
gctacaaattacacgctcgagtgagcccaaatcttctgacaaaactcacacat vtcvvvdvshedpevkfh
gcccaccgtgcccagcacctgaagccgcgggtgcaccgtcagtcttcctctt wyvdgvevhnaktkpree
ccccccaaaacccaaggacaccctcatgatctcccggacccctgaggtcac qynstyrvvsvltvlhqdwl
atgcgtggtggtggacgtgagccacgaagaccctgaggtcaagttcaactg ngkayacavsnkalpapie
gtacgtggacggcgtggaggtgcataatgccaagacaaagccgcgggag ktiskakgqprepqvytlpp
gagcagtacaacagcacgtaccgtgtggtcagcgtcctcaccgtcctgcacc srdeltknqvsltclvkgfyp
aggactggctgaatggcaaggcgtacgcgtgcgcggtctccaacaaagcc sdiavewesngqpennyk
ctcccagcccccatcgagaaaaccatctccaaagccaaagggcagccccg ttppvldsdgs fflyskltvd
agaaccacaggtgtacaccctgcccccatcccgggatgagctgaccaagaa ksrwqqgnvfscsvmhea
ccaggtcagcctgacctgcctggtcaaaggcttctatccaagcgacatcgcc lhnhytqkslslspgksrast
gtggagtgggagagcaatgggcagccggagaacaactacaagaccacgc kgpsvfplapsskstsggta
ctcccgtgctggactccgacggctccttcttcctctacagcaagctcaccgtg algclvkdyfpepvtvswn
gacaagagcaggtggcagcaggggaacgtcttctcatgctccgtgatgcat sgaltsgvhtfpavlqssgly
gaggctctgcacaaccactacacgcagaagagcctctccctgtctccgggta slssvvtvpssslgtqtyicn
aatctagagcctccaccaagggcccatcggtcttccccctggcaccctcctc vnhkpsntkvdkkv
caagagcacctctgggggcacagcggccctgggctgcctggtcaaggact
acttccccgagccggtgacggtgtcgtggaactcaggcgccctgaccagcg
gcgtgcacaccttcccggctgtcctacagtcctcaggactctactccctcagc
gtgaccgtgccctccagcagcttgggcacccagacctacatctgc
aacgtgaatcacaagcccagcaacaccaaggtggacaagaaagtttga
TSC192 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsarasasvgdr SEQ ID NO:53
Interceptor caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:58)
(huVL- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH#2 107- gtttcagcagaaaccagggaaagttcctaagctccgcatccattctg gsgteftltisslqpe
1A4 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
FC-C YAE) acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga carsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg pkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
catgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg kslslspgksrtva
gcagccggagaacaact acaagaccacgcctcccgtgctggactccgacg apsvfiJ¾psdeqlksgtas
Name Nucleotide S | s e e Amino Acid SEQ ID NOs:
Sequence (amino acid)
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca vvcllnyrypreakvqwkv
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca dnalqsgnsqesateqdsk
cgcagaagagcctctccctgtctccgggtaaatctagaactgtggctgcacc sseltlskadyekhk
cttcatcttcccgccatctgatgagcagttgaaatctggaactgcctct vyacevthqglsspvtksfh
tgcctgctgaattacttctatcccagagaggccaaagtacagtggaa rge
ggtggataacgccctccaatcgggtaactcccaggagagtgccacagagca
caaggacagcacctacagcctcagcagcgagctgacgctgagc
aaagcagactacgagaaacacaaagtctacgcctgcgaagtcacccatcag
ggcctgagctcgcccgtcacaaagagcttcaacaggggagagtga
TSC193 j atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO:54
Interceptor j caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:59)
(huVL- i gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH# 1 107- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
1A4 scFv- i gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
FC-CKYAE ) acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsevqlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt sckasgytftdyy
ggtggctctgaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvqqapgkglewmg
ggggctacagtgaagatctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaekfqgrvt
gcactgggtgcaacaggcccctggaaaagggcttgagtggatggg itadtstdtaymelsslrsedt
atattttaatccttataatgattatactagatacgcagagaagttccagggcaga avyycarsdgyydamdy
gtcaccataaccgcggacacgtctacagacacagcctacatggagctgagc wgqgttvtvsssepkssdkt
agcctgagatctgaggacacggccgtgtattactgtgcaagatcggatggtt htcppcpapeaagapsvflf
atgctatggactactggggtcaaggaaccacagtcaccgtctcctc ppkpkdtlmisrtpevtcvv
gagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagca vdvshedpevkfhwyvd
cctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagg gvevhnaktkpreeqynst
acaccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgt yrvvsvltvlhqdwlngka
gagccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtgga yacavsnkalpapiektisk
ggtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgt akgqprepqvytlppsrdel
accgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaa ltclvkgfypsdia
ggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgaga vewesngqpennykttpp
aaaccatctccaaagccaaagggcagccccgagaaccacaggtgtacacc vldsdgsfflyskltvdksr
ctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgc wqqgnvfscsvmhealhn
ctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaat lslspgksrtvaaps
gggcagccggagaacaactacaagaccacgcctcccgtgctggactccga vfifppsdeqlksgtasvvcl
cggctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcag hryfypreakvqwkvdnal
caggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccacta qsgnsqesateqdskdstys
cacgcagaagagcctctccctgtctccgggtaaatctagaactgtggctgca lsseltlskadyekhkvyac
ccatctgtcttcatcttcccgccatctgatgagcagttgaaatctggaactgcct evthqglsspvtksfnrge
ctgttgtgtgcctgctgaattacttctatcccagagaggccaaagtacagtgga
aggtggataacgccctccaatcgggtaactcccaggagagtgccacagagc
aggacagcaaggacagcacctacagcctcagcagcgagctgacgctgag
caaagcagactacgagaaacacaaagtctacgcctgcgaagtcacccatca
gggcctgagctcgcccgtcacaaagagcttcaacaggggagagtga
TSC 195 gcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO:55
Interceptor caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:60)
(huVL- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH#2 107- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
1A4 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc-CHl) acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt qlvqsgaevkkp
ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfnpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsi staymelsslrsd
atattttaa tccttataatgattatactagatacgcaca gaagt tccagggcaga dtavvycarsdsivvdamd
Nucleotide Seq e e Amino Acid SEQ D Os:
Sequence (a o acid)
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta pcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
gaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
aatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct nvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg ksls1spgksrast
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg kgpsvfplapsskstsggta
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca algclvkdyfpepvtvswn
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca sgaltsgvhtfpavlqssgly
cgcagaagagcctctccctgtctccgggtaaatctagagcctccaccaaggg slssvvtvpssslgtqtyicn
cccatcggtcttccccctggcaccctcctccaagagcacctctgggggcaca vnhkpsntkvdkkv
gcggccctgggctgcctggtcaaggactacttccccgagccggtgacggtg
tcgtggaactcaggcgccctgaccagcggcgtgcacaccttcccggctgtc
ctacagtcctcaggactctactccctcagcagcgtggtgaccgtgccctcca
gcagcttgggcacccagacctacatctgcaacgtgaatcacaagcccagca
acaccaaggtggacaagaaagtttga
TSC196 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO:56
Interceptor caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:61)
(huVL- gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
VH#1 107- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
1A4 scFv- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
Fc-CHl) acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
aacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsevqlvqsgaevkkp
caaacgaggtggcggagggtctgggggtggcggatccggaggt gatvkisckasgytftdyy
ggtggctctgaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvqqapgkglewmg
ggggctacagtgaagatctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaekfqgrvt
ctacatgcactgggtgcaacaggcccctggaaaagggcttgagtggatggg itadtstdtaymelsslrsedt
atattttaatccttataatgattatactagatacgcagagaagttccagggcaga avyycarsdgyydamdy
ataaccgcggacacgtctacagacacagcctacatggagctgagc wgqgttvtvsssepkssdkt
agcctgagatctgaggacacggccgtgtattactgtgcaagatcggatggtt htcppcpapeaagapsvflf
atgctatggactactggggtcaaggaaccacagtcaccgtctcctc tlmisrtpevtcvv
gagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagca vdvshedpevkfhwyvd
cctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagg gvevhnaktkpreeqynst
acaccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgt yrvvsvltvlhqdwlngka
gagccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtgga yacavsnkalpapiektisk
ggtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgt akgqprepqvytlppsrdel
accgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaa tknqvsltclvkgfypsdia
ggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgaga vewesngqpennykttpp
aaaccatctccaaagccaaagggcagccccgagaaccacaggtgtacacc vldsdgsfflyskltvdksr
ctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgc wqqgnvfscsvmhealhn
ctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaat hytqkslslspgksrastkg
gggcagccggagaacaactacaagaccacgcctcccgtgctggactccga psvfplapsskstsggtaalg
cggctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcag clvkdy epvtvswnsga
caggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccacta ltsgvhtfpavlqssglyslss
cacgcagaagagcctctccctgtctccgggtaaatctagagcctccaccaag vvtvpssslgtqtyicnvnh
tcggtcttccccctggcaccctcctccaagagcacctctgggggca kpsntkvdkkv
cagcggccctgggctgcctggtcaaggactacttccccgagccggtgacgg
tgtcgtggaactcaggcgccctgaccagcggcgtgcacaccttcccggctgt
cctacagtcctcaggactctactccctcagcagcgtggtgaccgtgccctcca
gcagcttgggcacccagacc tacatctgcaacgtgaatcacaagcccagca
Name tide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
acaccaaggtggacaagaaagtttga
TSC2 10 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac qvqlvqsgaevkkpgasv SEQ ID NO:69
humanized caccggtcaggtccagctggtacagtctggggctgaggtgaagaagcctgg kvsckasgytftdyymhw (SEQ ID NO:70)
SMIP ggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgactacta vrqapgqglewmgyfhp
(human catgcactgggtgcgacaggcccctggacaagggcttgagtggatgggata yndytryaqkfqgrvtmtr
VH#2-VL tccttataatgattatactagatacgcacagaagttccagggcagagtc dtsistaymelsslrsddtav
scFv-Fc) accatgaccagggacacgtctatcagcacagcctacatggagctgagcagc yycarsdgyydamdywg
ctgagatctgacgacacggccgtgtattactgtgcaagatcggatggttacta qgttvtvssggggsggggs
cgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcaggt iqmtqspsamsa
ggcggagggtctgggggtggcggatccggaggtggtggctctgatatcca svgdrvtitcrasksiskyla
gatgacccagtctccatccgccatgtctgcatctgtaggagacagagtcacc wfqqkpgkvpklrihsgstl
atcacttgccgggcgagtaagagcattagcaaatatttagcctggtttcagca qsgvpsrfsgsgsgteftltis
gaaaccagggaaagttcctaagctccgcatccattctggatctactttgcaatc fatyycqqhieyp
aggggtcccatctcggttcagtggcagtggatctgggacagaatttactctca wtfgqgtkveikrassepks
gcagcctgcagcctgaagattttgcaacttattactgtcaacagcata sdkthtcppcpapeaagap
ttgaatacccgtggacgttcggccaagggaccaaggtggaaatcaaacgcg svflfppkpkdtlmisrtpe
cctcgagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgccc dvshedpevkm
agcacctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaaccc wyvdgvevhnaktkpree
aaggacaccctcatgatctcccggacccctgaggtcacatgcgtggtggtgg qynstyrvvsvltvlhqdwl
acgtgagccacgaagaccctgaggtcaagttcaactggtacgtggacggcg ngkayacavsnkalpapie
tggaggtgcataatgccaagacaaagccgcgggaggagcagtacaacagc ktiskakgqprepqvytlpp
cgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatg srdeltknqvsltclvkgfyp
gcaaggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatc sdiavewesngqpennyk
gagaaaaccatctccaaagccaaagggcagccccgagaaccacaggtgta ttppvldsdgsfflyskltvd
caccctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgac ksrwqqgnvfscsvmhea
ctgcctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagag lhnhytqkslslspgk
caatgggcagccggagaacaactacaagaccacgcctcccgtgctggact
ccgacggctccttcttcctctacagcaagctcaccgtggacaagagcaggtg
gcagcaggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaac
cactacacgcagaagagcctctccctgtctccgggtaaatga
TSC21 1 atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac evqlvqsgaevkkpgatvk SEQ ID NO:71
humanized caccggtgaggtccagctggtacagtctggggctgaggtgaagaagcctg isckasgytftdyymhwv (SEQ ID NO:72)
SMIP gggctacagtgaagatctcctgcaaggcttctggatacacattcactgactact glewmgyfhpy
(human acatgcactgggtgcaacaggcccctggaaaagggcttgagtggatgggat ndytryaekfqgrvtitadts
VH#1-VL attttaatccttataatgattatactagatacgcagagaagttccagggcagagt tdtaymelsslrsedtavyy
scFv-Fc) caccataaccgcggacacgtctacagacacagcctacatggagctgagcag carsdgyydamdywgqg
atctgaggacacggccgtgtattactgtgcaagatcggatggttact ttvtvssggggsggggsgg
acgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcagg ggsdiqmtqspsamsasv
tggcggagggtctgggggtggcggatccggaggtggtggctctgatatcca gdrvtitcrasksiskyla f
gatgacccagtctccatccgccatgtctgcatctgtaggagacagagtcacc qqkpgkvpklrihsgstlqs
atcacttgccgggcgagtaagagcattagcaaatatttagcctggtttcagca gvpsrfsgsgsgteftltissl
gaaaccagggaaagttcctaagctccgcatccattctggatctactttgcaatc qpedfatyycqqhieypwt
aggggtcccatctcggttcagtggcagtggatctgggacagaatttactctca fgqgtkveikrassepkssd
ccatcagcagcctgcagcctgaagattttgcaacttattactgtcaacagcata kthtcppcpapeaagapsv
acccgtggacgttcggccaagggaccaaggtggaaatcaaacgag flfppkpkdtlmisrtpevtc
cctcgagtgagcccaaatcttctgacaaaactcacacatgcccaccgtgccc vvvdvshedpevkfhwy
agcacctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaaccc vdgvevhnaktkpreeqy
aaggacaccctcatgatctcccggacccctgaggtcacatgcgtggtggtgg nstyrvvsvltvlhqdwlng
acgtgagccacgaagaccctgaggtcaagttcaactggtacgtggacggcg kayacavsnkalpapiekti
tggaggtgcataatgccaagacaaagccgcgggaggagcagtacaacagc skakgqprepqvytlppsr
acgtaccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatg deltknqvsltclvkgfyps
gcaaggcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatc diavewesngqpennyktt
gagaaaaccatctccaaagccaaagggcagccccgagaaccacaggtgta ppvldsdgsfflyskltvdk
caccctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgac srwqqgnvfscsvmheal
ctgcctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagag hnhytqkslslspgk
caatgggcagccggagaacaactacaagaccac gcctcccgtgctggact
Name tide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
ccgacggctccttcttcctctacagcaagctcaccgtggacaagagcaggtg
gcagcaggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaac
cactacacgcagaagagcctctccctgtctccgggtaaatga
humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac qvqlvqsgaevkkpgasv SEQ ID NO:73
TSC2 12 caccggtcaggtccagctggtacagtctggggctgaggtgaagaagcctgg sgytftdyymhw (SEQ ID NO:74)
Scorpion ggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgactacta vrqapgqglewmgyfhp
(huVH#2- catgcactgggtgcgacaggcccctggacaagggcttgagtggatgggata yndytryaqkfqgrvtmtr
VL 4 ttttaatccttataatgattatactagatacgcacagaagttccagggcagagtc dtsistaymelsslrsddtav
scFv-Fc- accatgaccagggacacgtctatcagcacagcctacatggagctgagcagc yycarsdgyydamdywg
Cris7 scFv) ctgagatctgacgacacggccgtgtattactgtgcaagatcggatggttacta qgttvtvssggggsggggs
cgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcaggt ggggsdiqmtqspsamsa
ggcggagggtctgggggtggcggatccggaggtggtggctctgatatcca titcrasksiskyla
gatgacccagtctccatccgccatgtctgcatctgtaggagacagagtcacc wfqqkpgkvpklrihsgstl
atcacttgccgggcgagtaagagcattagcaaatatttagcctggtttcagca qsgvpsrfsgsgsgteftltis
gaaaccagggaaagttcctaagctccgcatccattctggatctactttgcaatc slqpedfatyycqqhieyp
cccatctcggttcagtggcagtggatctgggacagaatttactctca wtfgqgtkveikrassepks
ccatcagcagcctgcagcctgaagattttgcaacttattactgtcaacagcata sdkthtcppcpapeaagap
ttgaatacccgtggacgttcggccaagggaccaaggtggaaatcaaacgcg svflfppkpkdtlmisrtpe
gtgagcccaaatcttctgacaaaactcacacatgcccaccgtgccc vtcvvvdvshedpevkfh
agcacctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaaccc evhnaktkpree
aaggacaccctcatgatctcccggacccctgaggtcacatgcgtggtggtgg qynstyrvvsvltvlhqdwl
acgtgagccacgaagaccctgaggtcaagttcaactggtacgtggacggcg cavsnkalpapie
tggaggtgcataatgccaagacaaagccgcgggaggagcagtacaacagc ktiskakgqprepqvytlpp
acgtaccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatg srdeltknqvsltclvkgfyp
cgtacgcgtgcgcggtctccaacaaagccctcccagcccccatc sdiavewesngqpennyk
gagaaaaccatctccaaagccaaagggcagccccgagaaccacaggtgta ttppvldsdgsfflyskltvd
caccctgcccccatcccgggatgagctgaccaagaaccaggtcagcctgac ksrwqqgnvfscsvmhea
ctgcctggtcaaaggcttctatccaagcgacatcgccgtggagtgggagag lhnhytqkslslspgqrhnn
caatgggcagccggagaacaactacaagaccacgcctcccgtgctggact sslntgtqmaghspnsqvq
ccgacggctccttcttcctctacagcaagctcaccgtggacaagagcaggtg lvqsgggvvqpgrslrlsck
gcagcaggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaac asgytftrstmhwvrqapg
cactacacgcagaagagcctctccctgtctccgggtcagaggcacaacaatt kglewigyinpssaytnyn
cttccctgaatacaggaactcagatggcaggtcattctccgaattctcaggtcc qkfkdrftisadkskstaflq
agctggtgcagtctgggggcggagtggtgcagcctgggcggtcactgagg mdslrpedtgvyfcarpqv
ctgtcctgcaaggcttctggctacacctttactagatctacgatgcactgggta hydyngfpywgqgtpvtv
aggcaggcccctggaaagggtctggaatggartggatacattaatcctagca ssggggsggggsggggsa
gtgcttatactaattacaatcagaaattcaaggacaggttcacaatcagcgca qdiqmtqspsslsasvgdr
gacaaatccaagagcacagccttcctgcagatggacagcctgaggcccga vtmtcsasssvsymnwyq
ggacaccggcgtctatttctgtgcacggccccaagtccactatgattacaacg qkpgkapkrwiydssklas
ggtttccttactggggccaagggactcccgtcactgtctctagcggtggcgg gvparfsgsgsgtdytltissl
agggtctgggggtggcggatccggaggtggtggctctgcacaagacatcc qpedfatyycqqwsrnppt
agatgacccagtctccaagcagcctgtctgcaagcgtgggggacagggtca fgggtklqitr
ccatgacctgcagtgccagctcaagtgtaagttacatgaactggtaccagca
gaagcccggcaaggcccccaaaagatggatttatgactcatccaaactggct
tctggagtccctgctcgcttcagtggcagtgggtctgggaccgactataccct
cacaatcagcagcctgcagcccgaagatttcgccacttattactgccagcagt
ggagtcgtaacccacccacgttcggaggggggaccaagctacaaattacac
gataa
humanized [ atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac Evqlvqsgaevkkpgatv SEQ ID NO:75
TSC2 13 caccggtgaggtccagctggtacagtctggggctgaggtgaagaagcctg kisckasgytftdyymhw (SEQ ID NO:76)
Scorpion gggctacagtgaagatctcctgcaaggcttctggatacacattcactgactact vqqapgkglewmgyfhp
(huVH# 1- actgggtgcaacaggcccctggaaaagggcttgagtggatgggat yndytryaekfqgrvtitadt
VL 107-1A4 attttaatccttataatgattatactagatacgcagagaagttccagggcagagt stdtaymelsslrsedtavy
scFv-Fc- caccataaccgcggacacgtctacagacacagcctacatggagctgagcag ycarsdgyydamdywgq
Cris7 scFv) cctgagatctgaggacacggccgtgtattactgtgcaagatcggatggttact gttvtvssggggsggggsg
acgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcags gggsdicimtqspsamsas
aatgccaagacaaagecgcgggaggagcagtacaacagcacgta skak prep vv lgpsr
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
tccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgqrhnns
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg slntgtqmaghspnsqvql
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca vesgggvvqpgrslrlscka
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca sgytftrstmhwvrqapgq
cgcagaagagcctctccctgtctccgggtcagaggcacaacaattcttccct glewigyinpssaytnynq
gaatacaggaactcagatggcaggtcattctccgaattctcaggtccagctgg kfkdrftisadkskstaflqm
tggagtctgggggcggagtggtgcagcctgggcggtcactgaggctgtcct dslrpedtgvyfcarpqvhy
gcaaggcttctggctacacctttactagatctacgatgcactgggtaaggcag dyngfpywgqgtpvtvss
gcccctggacaaggtctggaatggattggatacattaatcctagcagtgcttat ggggsggggsggggsaqd
actaattacaatcagaaattcaaggacaggttcacaatcagcgcagacaaatc iqmtqspsslsasvgdrvt
caagagcacagccttcctgcagatggacagcctgaggcccgaggacaccg mtcsasssvsymnwyqq
gcgtctatttctgtgcacggccccaagtccactatgattacaacgggtttcctta kpgkapkrwiydssklasg
ctggggccaagggactcccgtcactgtctctagcggtggcggagggtctgg vparfsgsgsgtdytltisslq
gggtggcggatccggaggtggtggctctgcacaagacatccagatgaccc yycqqwsrnpptf
agtctccaagcagcctgtctgcaagcgtgggggacagggtcaccatgacct gggtklqitsss
gcagtgccagctcaagtgtaagttacatgaactggtaccagcagaagccgg
gcaaggcccccaaaagatggatttatgactcatccaaactggcttctggagtc
cctgctcgcttcagtggcagtgggtctgggaccgactataccctcacaatcag
cagcctgcagcccgaagatttcgccacttattactgccagcagtggagtcgta
acccacccacgttcggaggggggaccaagctacaaattacatcctccagct
humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac Diqmtqspsamsasvgdr SEQ ID NO:79
TSC250 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO:80)
Scorpion gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
(huVL- gtttcagcagaaaccagggaaagttcctaagctccgcatccattctg gsgteftltisslqpe
VH#2 107- ctttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
Fc-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
scFv, with ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
H8 1 linker) ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcrtcagtgaaggtctcctgcaaggcttctggatacacattcactgacta dytryaqkfqgrv
gcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta pcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg pkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag qvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgevqiplt
ggagaacaactacaagaccacgcctcccgtgctggactccgacg esyspnsqvqlvesgggvv
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca qpgrslrlsckasgytftrst
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca mhwvrqapgqglewigyi
cgcagaagagcctctccctgtctccgggtgaagttcaaattcccttgaccgaa npssaytnynqkfkdrftis
agttacagcccgaattctcaggtccagctggtggagtctgggggcggagtg adkskstaflqmdslrpedt
gtgcagcctgggcggtcactgaggctgtcctgcaaggcttctggctacacct gvyfca qvhydyngfp
ttactagatctacgatgcactgggfaaggcaggcccctggacaaggtctgga ywgc|g vtvss g| sg
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
atggattggatacattaatcctagcagtgcttatactaattacaatcagaaattca ggsaqdiqmtqs
aggacaggttcacaatcagcgcagacaaatccaagagcacagccttcctgc psslsasvgdrvtmtcsass
agatggacagcctgaggcccgaggacaccggcgtctatttctgtgcacggc svsymnwyqqkpgkapk
cccaagtccactatgattacaacgggtttccttactggggccaagggactccc rwiydssklasgvparfsgs
gtcactgtctctagcggtggcggagggtctgggggtggcggaiccggaggt gsgtdytltisslqpedfaty
ggtggctctgcacaagacatccagatgacccagtctccaagcagcctgtctg rnpptfgggtklq
caagcgtgggggacagggtcaccatgacctgcagtgccagctcaagtgtaa itsss
gttacatgaactggtaccagcagaagccgggcaaggcccccaaaagatgg
atttatgactcatccaaactggcttctggagtccctgctcgcttcagtggcagtg
ggtctgggaccgactataccctcacaatcagcagcctgcagcccgaagattt
cgccacttattactgccagcagtggagtcgtaacccacccacgttcggaggg
gggaccaagctacaaattacatcctccagctaa
humanized j atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac Diqmtqspsamsasvgdr SEQ ID NO:8 1
TSC25 1 ] caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO: 82)
Scorpion ] gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
(huVL- j agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
VH#2 107- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
Fc-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
scFv, with j ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggi gasvkvsckasgytftdyy
H83 ) j ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
tcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaqkfqgrv
gcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagrtcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
atcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgsslntgt
ggagaacaactacaagaccacgcctcccgtgctggactccgacg qmaghspnsqvqlvesgg
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca gvvqpgrslrlsckasgytft
cgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca rstmhwvrqapgqglewi
cgcagaagagcctctccctgtctccgggttcttccctgaatacaggaactcag gyinpssaytnynqkfkdrf
atggcaggtcattctccgaattctcaggtccagctggtggagtctgggggcg tisadkskstaflqmdslrpe
gagtggtgcagcctgggcggtcactgaggctgtcctgcaaggcttctggcta dtgvyfcarpqvhydyngf
cacctttactagatctacgatgcactgggtaaggcaggcccctggacaaggt pywgqgtpvtvssggggs
ctggaatggattggatacattaatcctagcagtgcttatactaattacaatcaga ggggsggggsaqdiqmtq
aattcaaggacaggttcacaatcagcgcagacaaatccaagagcacagcctt spsslsasvgdrvtmtcsas
cctgcagatggacagcctgaggcccgaggacaccggcgtctatttctgtgca ssvsymnwyqqkpgkap
cggccccaagtccactatgattacaacgggtttccttactggggccaaggga krwiydssklasgvparfsg
ctcccgtcactgtctctagcggtggcggagggtctgggggtggcggatccg sgsgtdytltisslqpedfaty
gtggctctgcacaagacatccagatgacccagtctccaagcagcc ycqqwsrnpptfgggtklq
tgtctgcaagcgtgggggacagggtcaccatgacctgcagtgccagctcaa itsss
gtgtaagttacatgaactggtaccagcagaagccgggcaaggcccccaaaa
gatggatttatgactcatccaaactggcttctggagtccctgctcgcttcagtg
gcagtgggtctgggaccgactataccctcacaatcagcagcctgcagcccg
aagatttcgccacttattactgccagcagtggagtcgtaacccacccacgttc
ggaggggggaccaagctacaaattacatcctccagctaa
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
Sequence (amino acid)
humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac Diqmtqspsamsasvgdr SEQ ID NO: 83
TSC252 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID NO: 84)
Scorpion gagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp
(huVL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
VH#2 107- gatctactttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
Fc-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt qlvqsgaevkkp
scFv, with ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
H91 linker) ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta dytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
atgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfnwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg vsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgnslanq
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg evqipltesyspnsqvqlve
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca sgggvvqpgrslrlsckasg
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca ytftrstmhwvrqapgqgl
cgcagaagagcctctccctgtctccgggtaactcattagcaaaccaagaagtt ewigyinpssaytnynqkf
caaattcccttgaccgaaagttacagcccgaattctcaggtccagctggtgga kdrftisadkskstaflqmd
gtctgggggcggagtggtgcagcctgggcggtcactgaggctgtcctgcaa slrpedtgvyfcarpqvhyd
tggctacacctttactagatctacgatgcactgggtaaggcaggccc yngfpywgqgtpvtvssg
ctggacaaggtctggaatggattggatacattaatcctagcagtgcttatacta gggsggggsggggsaqdi
attacaatcagaaattcaaggacaggttcacaatcagcgcagacaaatccaa qmtqspsslsasvgdrvtm
gagcacagccttcctgcagatggacagcctgaggcccgaggacaccggcg tcsasssvsymnwyqqkp
tctgtgcacggccccaagtccactatgattacaacgggtttccttactg wiydssklasgvp
gggccaagggactcccgtcactgtctctagcggtggcggagggtctgggg arfsgsgsgtdytltisslqpe
gtggcggatccggaggtggtggctctgcacaagacatccagatgacccagt dfatyycqqwsrnpptfgg
ctccaagcagcctgtctgcaagcgtgggggacagggtcaccatgacctgca gtklqitsss
gtgccagctcaagtgtaagttacatgaactggtaccagcagaagccgggca
aggcccccaaaagatggatttatgactcatccaaactggcttctggagtccct
gctcgcttcagtggcagtgggtctgggaccgactataccctcacaatcagca
gcctgcagcccgaagarttcgccacttattactgccagcagtggagtcgtaac
ccacccacgttcggaggggggaccaagctacaaattacatcctccagctaa
Humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO: 157
TSC295 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawfqqk (SEQ ID
on gagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp NO: 158)
(huVL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
VH#2 07- ctttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
F C-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
scFv, with ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
H9 linker) ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yrnpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgacc¾¾¾gacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
Name Nucleotide Sequence Amino Acid SEQ ID NOs:
ce (amino acid)
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfhwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspggsppsp
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg nsqvqlvesgggvvqpgrs
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca lrlsckasgytftrstmhwvr
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca qapgqglewigyinpssay
cgcagaagagcctctccctgtctccgggtgggagcccaccttcaccgaattc tnynqkfkdrftisadkskst
tcaggtccagctggtggagtctgggggcggagtggtgcagcctgggcggt aflqmdslrpedtgvyfcar
cactgaggctgtcctgcaaggcttctggctacacctttactagatctacgatgc pqvhydyngfpywgqgt
taaggcaggcccctggacaaggtctggaatggattggatacattaa pvtvssggggsggggsgg
tcctagcagtgcttatactaattacaatcagaaattcaaggacaggttcacaat ggsaqdiqmtqspsslsas
cagcgcagacaaatccaagagcacagccttcctgcagatggacagcctga vgdrvtmtcsasssvsymn
ggcccgaggacaccggcgtctatttctgtgcacggccccaagtccactatga wyqqkpgkapkrwiydss
ttacaacgggtttccttactggggccaagggactcccgtcactgtctctagcg klasgvparfsgsgsgtdytl
gtggcggagggtctgggggtggcggatccggaggtggtggctctgcacaa pedfatyycqqwsr
gacatccagatgacccagtctccaagcagcctgtctgcaagcgtgggggac ggtklqitsss
agggtcaccatgacctgcagtgccagctcaagtgtaagttacatgaactggta
ccagcagaagccgggcaaggcccccaaaagatggatttatgactcatccaa
actggcttctggagtccctgctcgcttcagtggcagtgggtctgggaccgact
ataccctcacaatcagcagcctgcagcccgaagatttcgccacttattactgc
cagcagtggagtcgtaacccacccacgttcggaggggggaccaagctaca
aattacatcctccagctaa
Humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr SEQ ID NO: 159
TSC296 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag asksiskylawfqqk (SEQ ID
Scorpion gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgstlqsgvp NO: 160)
(huVL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg srfsgsgsgteftltisslqpe
VH#2 107- ctttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
Fc-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
scFv, with caaacgaggtggcggagggtctgggggtggcggatccggaggt gasvkvsckasgytftdyy
H94 linker) ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfhpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
taatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ywgqgttvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
cccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfnwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta prepqvytlppsr
ggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgsggggs
gcagccggagaacaactacaagaccac¾cctcccgtgctg; actccgacg g ¾ ns 5 lv_
Nucleotide Sequence Amino Acid SEQ D s:
Sequence (ammo acid)
gciccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca vqpgrsirlsckas
ggggaacgtcttctcatgclccgtgatgcaigaggctctgcacaaccactaca gytftrstmhwvrqapgqg
cgcagaagagccictccctglctccgggttctggiggaggcggtt«aggcg iewigyinpssaytnynqk
gaggtggctccggcggiggcggatcgc-cgaaitctcaggtccagctggtgg fkdrffisadkskstaflqrnd
agtctgggggcggagtggEgcagccEgggcggtcactgaggctgtcctgca sirpedigvyfcarpqvhyd
aggcttctggctacacctttactagatctacgatgcactgggtaaggcaggcc wgqgtpvtvssg
cctggacaaggtctggaaiggattggaiacattaatcctagcagtgcttatact gggsggggsggggsaqdi
aattacaatcagaaattcaaggacaggttcacaatcagcgcagacaaatcca qmtqspsslsasvgdrvtm
agagcacagccttcctgcagatggacagcctg3ggcccgaggacaccggc tcsasssvsymnwyqqkp
itctgtgcacggccccaagtccactatgattacaacgggtttccttact gkapkrv/iydssklasgvp
ggggccaagggactixcgtcactgtctciagcggtggcggagggtctggg arfsgsgsgtdytiiisslqpe
ggtggcggatccggaggtggtggctctgcacaagacatccagatgaccca dfatyyeqqwsrnpptfgg
glctccaagcagcctgtctgcaagcgtgggggacagggicaccatgacctg gikiqitsss
cagtgccagctcaagtgtaagttacatgaactggtaccagcagaagccggg
caaggcccccaaaagatggatitatgad catccaaactggcttctggagtcc
ctgctcgcttcaglggcagigggtctgggaccgactataccctcacaatcagc
agcctgcagcccgaagaittcgccacttattactgccagcagtggagtcgiaa
cacgitcggaggggggaccaagctacaaattacatcctccagcta
Humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac j Diqmtqspsamsasvgdr SEQ ID NO l
TSC30 1 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag asksiskylawfqqk (SEQ ID
Scorpion gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt lrihsgstlqsgvp NO: 162)
(huVL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg ] gsgteftltisslqpe
VH#2 07- ctttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A scFv- acagaatttactctcaccatcagcagcctgcagcctgaagattttgcaacttatt gtkveikrggggsggggsg
222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp
scFv, with ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt sckasgytftdyy
H 5 linker) ggtggctctcaggtccagctggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfnpyndytryaqkfqgrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatccttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc tvtvsssepkssd
agcctgagatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg flfppkpkdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpevkfnwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg nstyrvvsvltvlhqdwlng
agccaegaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqvytlppsr
ccgigtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag deltknqvsltclvkgfyps
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg hnhytqkslslspgsggggs
gcagccggagaacaactacaagaccacgcctcccgtgctggactccgacg ggggsggggsqvqlvesg
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca ggvvqpgrslrlsckasgyt
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca ftrstrnhwvrqapgqgle
cgcagaagagcctctccctgtctccgggttctggtggaggcggttcaggcg wigyinpssaytnynqkfk
gaggtggctccggcggtggcggatcgcaggtccagctggtggagtctggg drftisadkskstaflqmdsl
ggcggagtggtgcagcctgggcggtcactgaggctgtcctgcaaggcttct rpedtgvyfcarpqvhydy
ggctacacctttactagatctacgatgcactgggtaaggcaggcccctggac ngfpywgqgtpvtvssgg
aaggtctggaatggattggatacattaatcctagcagtgcttatactaattacaa ggsggggsggggsaqdiq
tcagaaattcaaggacaggttcacaatcagcgcagacaaatccaagagcac mtqspsslsasvgdrvtmt
agccttcctgcagatggacagcctgaggcccgaggacaccggcgtctatttc csasssvsymnwyqqkp
tgtgcacggccccaagtccactatgattacaacgggtttccttactggggcca gkapkrwiydssklasgvp
agggactcccgtcactgtctctagcggtggcggagggtctgggggtggcg arfsgsgsgtdytltisslqpe
gatccggaggtggtggct ctgcacaagacatccagatgacccagtctccaa dfatyycqqwsrngptfgg
Amino Acid "£65355?
Sequence (amino acid)
“““vamwmfi
gcagcctgtctgcaagcgtgggggacagggtcaccatgacctgcagtgcca gtquitsss :
gctcaagtgtaagttacatgaactggtaccagcagaagccgggcaaggccc
ccaaaagatggatttatgactcatccaaactggcttctggagtccctgctcgct
tcagtggcagtgggtctgggaccgactataccctcacaatcagcagcctgca
gcccgaagatttcgccacttattactgccagcagtggagtcgtaacccaccca
cgttcggaggggggaccaagctacaaattacatcctccagctaa
“unuuuuu.nun“........‘~...uuuu.“u...._.u““‘“______..__...........e..._...._.._..._._._._...____...._...._....________............._.__..............................................
Humanized atggaagcaccagcgcagcttctcttcctcctgctactctggctcccagatac diqmtqspsamsasvgdr ‘fi02163
TSC302 caccggtgatatccagatgacccagtctccatccgccatgtctgcatctgtag vtitcrasksiskylawquk (SEQ ID
Scorpion gagacagagtcaccatcacttgccgggcgagtaagagcattagcaaatattt pgkvpklrihsgsthsgvp NO: 164)
(huVL- agcctggtttcagcagaaaccagggaaagttcctaagctccgcatccattctg §srfsgsgsgteftltisslqpe
VH#2 107- ctttgcaatcaggggtcccatctcggttcagtggcagtggatctggg dfatyycqqhieypwtfgq
1A4 scFv- acagaatttactctcaccatcagoagectgcagcctgaagattttgcaacttatt Egtkveikrggggsggggsg
Fc-DRA222 actgtcaacagcatattgaatacccgtggacgttcggccaagggaccaaggt gggsqvqlvqsgaevkkp 3
scFv, with ggaaatcaaacgaggtggcggagggtctgggggtggcggatccggaggt sckasgytftdyy
lH106 linker) ggtggctctcaggtccagetggtacagtctggggctgaggtgaagaagcct mhwvrqapgqglewmg
ggggcttcagtgaaggtctcctgcaaggcttctggatacacattcactgacta yfnpyadytryaqqugrv
ctacatgcactgggtgcgacaggcccctggacaagggcttgagtggatggg tmtrdtsistaymelsslrsd
atattttaatcCttataatgattatactagatacgcacagaagttccagggcaga dtavyycarsdgyydamd
gtcaccatgaccagggacacgtctatcagcacagcctacatggagctgagc ngqgttvtvsssepkssd
agatctgacgacacggccgtgtattactgtgcaagatcggatggtta kthtcppcpapeaagapsv
ctacgatgctatggactactggggtcaaggaaccacagtcaccgtctcctcg kdtlmisrtpevtc
agtgagcccaaatcttctgacaaaactcacacatgcccaccgtgcccagcac vvvdvshedpekanwy
ctgaagccgcgggtgcaccgtcagtcttcctcttccccccaaaacccaagga vdgvevhnaktkpreeqy
caccctcatgatctcccggacccctgaggtcacatgcgtggtggtggacgtg vsvltvlhqdwlng
agccacgaagaccctgaggtcaagttcaactggtacgtggacggcgtggag kayacavsnkalpapiekti
gtgcataatgccaagacaaagccgcgggaggagcagtacaacagcacgta skakgqprepqutlppsr 3
‘ deltknqultclvkgfyps
ccgtgtggtcagcgtcctcaccgtcctgcaccaggactggctgaatggcaag i
gcgtacgcgtgcgcggtctccaacaaagccctcccagcccccatcgagaaa diavewesngqpennyktt 3
accatctccaaagccaaagggcagccccgagaaccacaggtgtacaccct ppvldsdgsfflyskltvdk i
gcccccatcccgggatgagctgaccaagaaccaggtcagcctgacctgcct srwqqgnvfscsvmheal 3
ggtcaaaggcttctatccaagcgacatcgccgtggagtgggagagcaatgg kslslspgqrhnns
gcagccggagaacaactacaagacc‘acgcctcccgtgctggactccgacg slntgtqmaghsqvqlves \
gctccttcttcctctacagcaagctcaccgtggacaagagcaggtggcagca urslrlsckasgy
ggggaacgtcttctcatgctccgtgatgcatgaggctctgcacaaccactaca tftrstmhwvrqapgqgle
cgcagaagagcctctccctgtctccgggtcagaggcacaacaattcttccct wigyinpssaytnynqkfl<
gaatacaggaactcagatggcaggtcattctcaggtccagctggtggagtct drfiisadkskstaflqmdsl
gggggcggagtggtgcagcctgggcggtcactgaggctgtcctgcaaggc rpedtgvyfcarpqvhydy
ttctggctacacctttactagatctacgatgcactgggtaaggcaggcccctg ngfpngqgtpvtvssgg
gacaaggtctggaatggattggatacattaatcctagcagtgcttatactaatta ggsggggsggggsaqdiq
caatcagaaattcaaggacaggttcacaatcagcgcagacaaatccaagag mtqspsslsasvgdrvtmt
cacagccttcctgcagatggacagcctgaggcccgaggacaccggcgtcta csasssvsymnquqkp 3
tttctgtgcacggccccaagtccactatgattacaacgggtttccttactgggg gkapkrwiydssklasgvp
ccaagggactcccgtcactgtctctagcggtggcggagggtctgggggtgg arfsgsgsgtdytltisslqpe
cggatccggaggtggtggctctgcacaagacatccagatgacccagtctcc dfatyycqusmpptfgg
cctgtctgcaagcgtgggggacagggtcaccatgacctgcagtgc gtquitsss
cagctcaagtgtaagttacatgaactggtaccagcagaagccgggcaaggc
ccccaaaagatggatttatgactcatccaaactggcttctggagtccctgctog
cttcagtggcagtgggtctgggaccgactataccctcacaatcagcagcctg
cagcccgaagatttcgccacttattactgccagcagtggagtcgtaacccacc
cacgttcggaggggggaccaagctacaaattacatcctccagctaa
EXAMPLE 2 : Heterodimeric Molecules
PSMA-specific Interceptor molecules were made using Interceptor scaffolding as
generally disclosed in ational Appl. Nos. PCT/US20 10/62436 and PCT/US201 0/62404.
y, PSMA-specific polypeptide heterodimers were made by co-expressing two different
polypeptides chains, one polypeptide chain comprising an immunoglobulin CH1
heterodimerization domain and the other polypeptide chain comprising an immunoglobulin
CL heterodimerization domain. The day before transfection HEK293 cells were suspended
at a cell concentration of 0.5 x 106 ml in GIBCO® Freestyle™ 293 expression medium
(Invitrogen). 250mls of cells were used for a large transfection, and 60mls of cells were
used for a small transfection. On transfection day, 320ul of 293fectin™ transfectin t
(Invitrogen) was mixed with 8 mis of media. At the same time, 250 ug of DNA of each of the
single chain polypeptide was mixed with the 8 mis of media and incubated for 5 minutes.
After 15 minutes of tion, the DNA-293fectin mixture was added to the 250 mis of 293
cells and returned to the shaker at 37°C and shaken at a speed of 120 RPM. For the
smaller transfection using 60 mis of cells, a fourth of the DNA, 293fectin, and media were
used.
Protein A affinity chromatography was used to purify the proteins. 2ml of packed
protein A agarose (Repligen) was added to a Econo-Column® chromatography column, size
2.5 x 10cm (Bio-Rad Laboratories), washed ively with PBS (10X column volume), and
the supernatants were loaded, washed with PBS again, and eluted with 3 column volumes of
Pierce IgG n buffer. Proteins were then dialyzed extensively against PBS. Proteins
were then concentrated using Amicon® Centricon® centrifugal filter devices (Millipore Corp.)
to a final volume around 0.5ml.
Purified proteins were analyzed on a 10% SDS-PAGE gel using XCell ck™
ell electrophoresis system (Invitrogen).
Bivalent polypeptide heterodimer TSC122 was made by co-expressing single chain
polypeptides TSC084 and TSC093. Single chain ptide TSC084 ses from its
amino- to carboxyl-terminus: murine 107-1A4 (anti-PSMA) VL-VH scFv, human lgG1 SCC-P
hinge, human lgG1 CH2, human lgG1 CH3, and human CH1 . The nucleotide and amino
acid sequences for TSC084 are set forth in SEQ ID NOs:44 and 46, respectively. Single
chain polypeptide TSC093 comprises from its amino- to carboxyl-terminus: Cris7 (anti-CD3)
scFv, human lgG1 SCC-P hinge, human lgG1CH2, human lgG1 CH3, and human
CK(YAE)(/'.e., human C K without the first Arg or last Cys, but with N30Y, V55A, and T70E
substitutions). The nucleotide and amino acid sequences for TSC093 are set forth in SEQ
ID NOs:45 and 47, respectively.
Bivalent polypeptide heterodimer TSC200 was made by co-expressing polypeptide
chains TSC192 and TSC125. TSC192 comprises from its amino- to carboxyl-terminus:
zed 107-1 A 4 (anti-PSMA) VL-VH#2 scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human lgG1 CH3, and human C K(YAE). The tide and amino acid sequences
for TSC192 are set forth in SEQ ID NOs:53 and 58, respectively. TSC125 comprises from
its amino- to carboxyl-terminus: Cris7 (anti-CD3) scFv, human lgG1 SCC-P hinge, human
lgG1 CH2, human lgG1 CH3, and human CH1 . The nucleotide and amino acid sequences
for TSC125 are set forth in SEQ ID NOs:52 and 57, respectively.
Bivalent polypeptide heterodimer TSC202 was made by ressing polypeptide
chains TSC193 and TSC125. TSC193 comprises from its amino- to carboxyl-terminus:
humanized 4 PSMA) VL-VH#1 scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human lgG1 CH3, and human C K(YAE). The nucleotide and amino acid sequences
for TSC193 are set forth in SEQ ID NOs: 54 and 59, respectively. TSC125 ses from
its amino- to carboxyl-terminus: Cris7 (anti-CD3) scFv, human lgG1 SCC-P hinge, human
lgG1 CH2, human lgG1 CH3, and human CH1. The nucleotide and amino acid sequences
for TSC125 are set forth in SEQ ID NOs:52 and 57, respectively.
Bivalent polypeptide heterodimer TSC204 was made by co-expressing polypeptide
chains TSC195 and TSC093. TSC195 ses from its amino- to yl-terminus:
humanized 107-1A4 (anti-PSMA) VL-VH#2 scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human lgG1 CH3, and human CH1 . The nucleotide and amino acid sequences for
TSC195 are set forth in SEQ ID NOs:55 and 60, respectively. TSC093 comprises from its
amino- to carboxyl-terminus: Cris7 (anti-CD3) scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human IgGI CH3, and human C K(YAE). The nucleotide and amino acid sequences
for TSC093 are set forth in SEQ ID NOs: 45 and 47, respectively.
Bivalent polypeptide heterodimer TSC205 was made by co-expressing polypeptide
chains TSC196 and TSC093. TSC196 comprises from its amino- to carboxyl-terminus:
humanized 107-1A4 (anti-PSMA) VL-VH#1 scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human lgG1 CH3, and human CH1 . The nucleotide and amino acid sequences for
TSC196 are set forth in SEQ ID NOs:56 and 6 1, respectively. TSC093 comprises from its
amino- to carboxyl-terminus: Cris7 (anti-CD3) scFv, human lgG1 SCC-P hinge, human lgG1
CH2, human lgG1 CH3, and human C K(YAE). The nucleotide and amino acid sequences
for TSC093 are set forth in SEQ ID NOs: 45 and 47, respectively.
EXAMPLE 3 : SCORPION Molecule Construction
[02333 pecific SCORPION molecules (TSC1 4 SEQ D NO:48 (nucleic acid),
SEQ D NG:49 (amino acid); TSC199 (SEQ D NO:50 (nucleic acid), SEQ D NO:51 (amino
acid)); TSC 212 (SEQ D Q:73 (nucleic acid), SEQ ΪΌ NO:74 (amino acid}); TSC213 (SEQ
ID NO:75 (nucleic acid), SEQ ID NO:76 (amino acid)); TSC249 (SEQ D NO:77 (nucleic
acid), SEQ ID NO:78 (amino acid)); TSC250 (SEQ ID NO:79 (nucleic acid), SEQ ID NO:80
(amino acid)); TSC251 (SEQ ID NO:81 (nucleic acid), SEQ ID NO:82 (amino acid)); and
TSC252 (SEQ ID NO:83 (nucleic acid), SEQ ID NO:84 (amino acid))) were made using
standard molecular biology techniques, starting with existing SCORPION scaffolding as
templates and using the methods generally sed in, e.g., PCT Application Publication
No. , U.S. Patent Application Publication No. 2008/0051844, PCT
Application Publication No. , PCT Application Publication No. WO
2010/003108, and U.S. Patent No. 7,166,707 (see also Table 3). Insertion of the N-terminal
scFv binding domain was accomplished through digestion of the parental template and scFv
insert with either the ction enzymes Hindlll and Xhol or Agel and Xhol, desired
nts were identified and isolated by agarose gel purification, and ligation. Insertion of
the C-terminal scFv g domain was accomplished through ion of the parental
template and scFv insert with the restriction enzymes EcoRI and Notl, desired fragments
were identified and ed by agarose gel purification, and ligation.
EXAMPLE 4 : Binding of chimeric and humanized molecules to PSMA(+) and PSMA(-) cell
lines
onal antibodies were purified from hybridoma cell culture media by standard
procedures. SMIP, Interceptor, and SCORPION molecules disclosed herein were produced
by transient transfection of human HEK293 cells, and purified from cell culture supernatants
by Protein A affinity chromatography. If aggregates were detected after affinity
chromatography, secondary size exclusion tography was also performed to ensure
homogeneity of the protein.
g studies on PSMA+ (C4-2, W u et al., 1994 Int. J. Cancer 57:406-12) and
PSMA- (DU-145, Stone et al., 1978, Intl. J. Cancer -81) prostate cancer cell lines
were performed by standard FACS-based staining procedures. A typical ment would
label 300,000 cells per well with a range of 200 nM to 0.1 nM binding molecule in 100 ul of
FACS buffer (PBS + 2% normal goat serum + 2% fetal bovine serum + 0.1% sodium azide)
on ice, followed by washes and incubation with fluorescently-labeled secondary dy,
goat anti-human IgG ( 1:400 dilution of Invitrogen # 11013 = 5 ug/ml). After washing
secondary antibody off cells, cells were incubated with 7-Aminoactinomycin D (7-AAD)
staining solution (BD Pharmingen™cat# 559925)(6 ul of 7AAD to 100 ul of FACS Buffer) for
minutes. Signal from bound molecules was detected using a FACSCalibur™ flow
cytometer (BD Biosciences) and analyzed by FlowJo flow cytometry analysis software. 7-
AAD+ cells were excluded from is. Nonlinear regression analysis to determine EC50s
was performed in GraphPad Prism® ng and statistics software.
Binding studies (Figure 1) were used to compare the parent 107-1A4 murine
antibody (i.e., TSC045) with the chimeric SMIP molecules (TSC085, TSC092) and the
bispecific, chimeric Interceptor molecule TSC122. Both chimeric SMIP molecules showed
comparable affinity to PSMA+ cells as the parent murine antibody, although one (TSC085,
with a VL-VH scFv orientation) showed a lower level of saturation on the surface of the cell.
The bispecific, chimeric Interceptor molecule (TSC122), which had only a single 4
binding , showed a lower binding affinity to the PSMA+ cells. All showed little to no
binding to the PSMA- cell line DU-145. g studies of zed SMIP molecules
TSC188 and TSC189 (Figure 2A) showed comparable affinities to those previously
determined (data not shown) for the parent monoclonal antibody, with rly high levels of
saturation and selectivity for PSMA+ C4-2 cells over PSMA- DU-145 cells. Binding studies
of zed SCORPION molecules TSC194 and TSC199 showed comparable affinities to
the parental zed SMIP molecules TSC188 and TSC189 (Figure 2B), with no binding
to the PSMA- DU-145 cell line.
E 5 : Differential cellular internalization seen between 4 antibody, SMIP and
Interceptor scaffolds
The binding proteins for internalization s were directly labeled with
CypHer™5E Mono NHS Ester (GE Healthcare, #PA15401) according to cturer's
instructions. 5E is a sitive red excited dye that fluoresces at low pH, which is
typically encountered inside of endosomes and lysosomes; CypHer5E fluorescence can be
used as a proxy for cellular internalization as a result. Dye dissolved in fresh DMSO was
added to purified protein in PBS/sodium carbonate buffer, pH 8.3 (9:1), at a otein
molar ratio of 20:1 . After at least 1 hour incubation in the dark at room temperature, labeled
protein was separated from unreacted dye by dialysis at 4°C. Absorbance at 280 nm and
500 nm was used to calculate protein and dye concentration for the labeled material. The
resulting dye:protein ratio ranged from 6 to 14, and this value was used to normalize the
imaging data. To ensure that the presence of protein aggregates did not bias the
internalization data, when individual molecules had detectable levels of aggregates (>5%),
secondary size exclusion chromatography was used to purify molecules to very high levels
of homogeneity (>95%).
Cells were plated 2 days before experiment at 4000 cells per well in poly-D-lysinecoated
96-well plates, black with clear bottoms (BD Biocoat, ) in usual culture media.
Media changes during experiment were conducted carefully to maintain cell adhesion to
surface. Nuclei were d with Hoechst 33342 (Invitrogen, H3570) in serum-free phenol
red-free RPMI media (Invitrogen, 11835) plus 20mM HEPES (Invitrogen, 15630) (called
PRF-RPMI) for an hour. Wells were washed with PRF-RPMI plus 10% FBS, and 100 ul
warm PRF-RPMI + 10% FBS was added. Plates were moved to ice for 5 minutes then
labeled g proteins at various dilutions were added from 5x stock solutions for one hour
binding on ice. Plates were moved to a 37°C C0 incubator for 60 minutes to allow
alization to proceed. Before imaging, media was replaced with PRF-RPMI + 1 % FBS.
Wells were scanned on IN Cell Analyzer 1000 automated cellular and subcellular
imaging system (GE Healthcare) to quantitate internalized protein, data was collected from 8
fields in each well. The acquisition protocol was set to collect data with suitable filter sets for
Hoechst and CypHer5E, and bright field images. Data was analyzed by IN Cell Investigator
software, using a protocol developed to detect fluorescent granules within a zone of
cytoplasm encircling each nucleus and measuring their area. Total granule area ed
was normalized to compensate for the relative level of dye tution per labeled protein.
Internalization experiments using the parental 107-1A4 murine dy, or the
chimeric SMIP and Interceptor molecules, showed no internalization in the PSMA- DU-145
cell line (data not shown), but some internalization could be detected on the PSMA+ LNCaP
(CRL-1740™, American Type Culture Collection) or C4-2 cell lines e 3). Internalization
of the parental antibody was greater than the SMIP or Interceptor molecules at all
concentrations tested. Apparent internalization from the (monovalent) Interceptor molecule
was higher than from the (bivalent) SMIP molecule, which could be due to the higher
potential binding stoichiometry - each Interceptor molecule can only engage one le of
PSMA, whereas each SMIP molecule can engage two molecules of PSMA, potentially
leading to twice as much Interceptor molecule lating on the cell surface. If both the
Interceptor and SMIP les have similar levels of internalization, a higher apparent
signal would always be seen from the eptor molecule.
E 6 Redirected T-cell cytotoxicity against PSMA(+) cell lines
Peripheral blood mononuclear cells (PBMC) were isolated from human blood from
two different donors ed as AG or W ) using standard ficoll gradients. The isolated cells
were washed in saline buffer. T cells were additionally isolated using a Pan T-cell Isolation
Kit II from Miltenyi Biotec (Bergisch Gladbach, Germany) using the manufacturer's protocol.
T cells were used with or without stimulation, as noted in the figures (see Figures 4-6), and
added at a 10:1 ratio (T cell : target cell) unless indicated otherwise.
C4-2 castration-resistant prostate cancer (CRPC) cells were labeled with
CellTracker™ Green cytoplasmic dye (Invitrogen, C7025) following cturer's protocol
in order to distinguish them from T cells. Labeled C4-2 cells were seeded into poly-D-lysinecoated
96-well plates, as used in Example 3 , at 8000 cells per well in standard growth
media, one day before on of T cells and Interceptor molecule. Ten ul of concentrated
bispecific Interceptor molecule (TSC122, TSC200, TSC202, or TSC204) was added to 100
ul of media per well, plus 50 ul of T cells (80,000 cells) in standard growth media. Cell
cultures were kept in C0 incubator at 37°C overnight. After 24 hr exposure to Interceptor
molecule, cells were stained with 7-AAD and Hoechst dyes to enable quantitation of dead
cells. Media was changed to 100 ul RPMI + 1% FBS + 10 ug/ml 7-AAD + Hoechst at 1:1000
dilution of stock, and incubated for an onal 30 minutes.
Imaging and quantitation was performed by use of an InCell Analyzer cope
(GE), collecting data from 10 fields per well. The acquisition protocol was set to collect data
with suitable filter sets for: a) nuclei detection via Hoechst stain, b) cell type discrimination
via CellTracker™ Green detection, c) live/dead cell status determination via 7-AAD staining,
and bright field images. Quantitation was performed by InCell Workstation software, using a
decision tree application. Individual cells were ed by presence of nuclear stain by
Hoechst. Threshold values of signal in the green channel (CellTracker™ Green) were used
to split cells into C4-2 (positive) and T cell (negative) tions. Threshold values of signal
in red channel (7-AAD) were used to split cells into dead ive) and live (negative)
populations.
ific Interceptor molecules featuring either the 107-1A4 murine scFv or
humanized 107-1A4 scFv as well as an D3 scFv (Cris7) were tested for the ability to
cross-link T-cells to target PSMA+ tumor cells and enable target-dependent cytotoxic T cell
responses (so-called ected T cell cytotoxicity', or RTCC). Potent target-dependent
xic activity over 24 hours was observed with the chimeric TSC122 Interceptor
molecule (Figure 4) with T-cells from two different donors; roughly 60% of target cells were
lysed by treatment with as little as 100 pM of TSC122 Interceptor le. No direct
cytotoxicity on PSMA+ cells was observed in the absence of effector T-cells (Figure 4); no
cytotoxicity was rly observed on PSMA- cells in the ce of effector T-cells (data
not shown). The cytotoxic activity of humanized Interceptor molecules 0, TSC202,
and TSC204) was also tested alongside the parent chimeric Interceptor molecule (TSC122)
(Figure 5). Two of the humanized Interceptor les (TSC200, TSC204) showed lower
RTCC activity than the parent; one humanized Interceptor molecule (TSC202) showed equal
RTCC ty to the parent chimeric Interceptor molecule (TSC122) with similar, low pM
potency. These results demonstrated that certain humanized Interceptor molecules had
r T cell cytotoxicity as the parental chimeric eptor molecule.
The cytotoxic activity of zed SCORPION molecules (TSC1 94, TSC1 99,
TSC212, TSC213), ed to that of the chimeric Interceptor molecule , was also
examined (Figure 6). The humanized SCORPION molecules with anti-PSMA scFvs in the
VL-VH orientation (TSC194, TSC199) had comparable cytotoxic ty to the bispecific
chimeric Interceptor molecule (also with an scFv in the VL-VH orientation, and also including
an anti-CD3 scFv (Cris7)). The humanized SCORPION molecules with anti-PSMA scFvs in
the VH-VL orientation, on the other hand, had lower overall cytotoxicity.
EXAMPLE 7 : Target-dependent T-cell activation an proliferation induced against PSMA+
cell lines directed by bispecific 4-derived molecules
To compare the effectiveness of different bispecific polypeptide molecules at
inducing -dependent T-cell tion and proliferation, four different anti-PSMA and
anti-CD3 bispecific molecules including TSC122 (a chimeric Interceptor molecule), TSC202
(humanized Interceptor molecule), TSC194 (a humanized SCORPION molecule), and
TSC199 (a humanized SCORPION molecule) were compared.
C4-2 prostate cancer cells (PSMA+) were obtained from MD Anderson Cancer
Center (Houston, TX) and cultured according to the provided protocol. Peripheral blood
mononuclear cells (PBMC) were isolated from human blood using standard ficoll gradients.
The isolated cells were washed in saline buffer. T cells were further isolated using a Pan T-
ce Isolation Kit from i tenyi Biotec (Bergisch Giadbach, Germany) using the
manufacturer's protocol.
Proliferation was ed by labeling isolated T cell populations with
carboxyfiuorescein ate succinimidyl ester (CFSE), CFSE-iabeled T cells were plated
i U-bottom 9 -we plates at 0 c !s/ el respectively, with 30,000 C4-2 tumor
cells/well, to achieve T cell to tu or cell ratios of roughly 3:1 Concentrations of test
molecules ranging from n to 0.1 were added to the cell mixtures in a total of 200
ui/well in RP v 1840 media supplemented with 0% human or bovine serum, sodium
te and non-essential amino acids. P a s were incubated at 37°C, 5% C0 in
humidified incubators. After 3 days, cells were labeled with antibodies for flow cytometric
analysis. Cells were labeled and washed in their original plates to minimize cell losses
during transfers, and all labeling was done in saline buffer with 0.2% bovine serum albumin.
First, cells were pre-incubated with 100 ug/ml human IgG at room temperature for 15 min.
Subsequently, cells were ted with a mixture (total volume 50 ul) of the following dyelabeled
antibodies: CD5-PE, CD4-APC, CD8-Pacific Blue, CD25-PE-Cy7, as well as 7-
Amino Actinomycin D (7AAD ter) for 40 min. Cells were washed twice, resuspended
in 80 to 120 ul volumes, and measured immediately in a BD LSRII flow cytometer o e
80% of the contents of each well. The sample files were analyzed using FlowJo software to
calculate the percentages and numbers of cells that had one at least one cell division,
according to their CFSE profile, by gating sequentially on activated, live CD4+ or CD8+ T
cells (7AAD-, CD5+ CD25+ CD4+ or 7AAD- CD5+ CD25+ CD8+, tively). Mean
values and rd deviations were calculated using Microsoft Excel software. Graphs
were d using Microsoft Excel or GraphPad Prism.
Analysis of live CD4+ and CD8+ populations from wells with C4-2 cells treated with
T-cells (Figure 7A and Figure 7B) revealed a significant increase in both the total number of
cells and percent erating cells in the presence of C4-2 cells displaying the target PSMA
antigen. Proliferation was slightly higher for CD4+ T-cells than CD8+ T-cells, and the
proliferation induced by the Interceptor molecules TSC122 and TSC202 ted at a
higher level than the responses d by the SCORPION molecules TSC194 and
TSC199. All les showed induction of T-cell proliferation at low concentrations (100
pM). No significant differences in relative induction of CD4+ versus CD8+ cell proliferation
were apparent between molecules.
EXAMPLE 8 : Comftetitiv e binding studies of anti-PSMA molecules ms 107-1A4 binds a
unique epitope on PSMA
To show that anti-PSMA murine monoclonal antibody 107-1A4, chimeric 107-1A4
SMIP molecule (TSC085) and humanized 107-1A4 SMIP molecule (TSC189) binds a
unique epitope on PSMA, which is not recognized by common literature antibodies (J415,
J591), and that the conversion of murine monoclonal antibody Q7 4 to SMIP format did
not result in a shift in that binding epitope, ition binding experiments were carried out.
Hybridomas ing the J591 , Hu591 (a humanized version of J591) and J415 antibodies
were obtained from ATCC. Monoclonal antibodies were purified from hybridoma cell culture
media by standard procedures. SM P molecules were produced by transient transfection of
human 293 ce!fs, and purified from cell culture supernatants by Protein A ty
chromatography. If aggregates were detected after affinity chromatography, secondary size
exclusion chromatography was also performed to ensure homogeneity of the protein.
Competitive binding studies on the PSMA+ C4-2 prostate cancer cell line were
performed by rd FACS-based staining procedures. To simplify binding
measurements, molecules with human Fc domains were used to compete t molecules
with murine Fc domains, and either an anti-human or anti-mouse antibody was used to
detect g to the target cell line.
In a typical experiment, molecule X (binder) would be mixed with molecule Y
(competitor), placed on ice, and then used to label 300,000 cells per well with 4 nM of
molecule X and a range of 250 nM to 0.4 nM molecule Y in 100 ul of FACS buffer (PBS +
2% normal goat serum + 2% fetal bovine serum + 0.1% sodium azide) on ice, followed by
washes and incubation with fluorescently-labeled secondary antibody specific for molecule
X , either goat anti-human IgG ( 1 :400 dilution of Invitrogen 11013 = 5 ug/ml) or goat antimouse
IgG ( 1 :400 dilution of Invitrogen 1017). After washing secondary antibody off ceils,
cells were incubated with 7AAD (6 ul of BD ngen 7AAD, cat# 559925) to 100 ul of
FACS Buffer) for 20 minutes. Signal from bound molecules was detected using a
FACSCalibur flow cytometer and analyzed by FlowJo. 7A D+ cells were excluded from
is. Nonlinear regression analysis to determine EC50s was performed in GraphPad
Prism.
itive binding studies e 8A) were used to see if the humanized J591
antibody, Hu591 , could compete with the binding of 107-1A4, J591 or J415 murine
antibodies to cells. No competition was observed for the binding of 107-1A4, suggesting it
binds a non-competitive epitope; ition was observed for the binding of both J591 and
J415 antibodies, however. Next, onal binding studies were carried out to see if the
three murine antibodies could compete with the binding of the chimeric 107-1A4 SMIP
molecule TSC085 to cells (Figure 8B). Strong competition was seen from binding of the
parental 107-1A4 antibody, ming that the SMIP molecule bound to the same epitope.
No ive competition was seen from the J591 or J415 murine antibodies. Last, binding
studies were carried out to see if the three murine antibodies could compete with the binding
of the humanized 107-1A4 SMIP molecule TSC189 to cells (Figure 8C). Again, similarly
strong competition was seen from binding of the parental 107-1A4 antibody, but no ive
competition was seen from the J591 or J415 murine antibodies. This confirms that 107-1A4
binds a unique epitope on PSMA. It also shows that any shift in behavior of 107-1A4-based
SMIP and Interceptor molecules from that of the parental 107-1A4 antibody is not due to a
shift in binding epitopes.
EXAMPLE 9 : tion of tumor growth in vivo using an anti-PSMA ific molecule
To confirm the effectiveness of an anti-PSMA bispecific molecule of the present
disclosure (e.g., anti-PSMA and anti-CD3 bispecific les) at inhibiting tumor growth in
vivo, the anti-PSMA bispecific molecule is evaluated as follows.
lactic treatment, or prevention of tumor engraftment of subcutaneous
tumors: Cultured, PSMA-expressing tumor cell lines (such as LNCaP, LNCaP C4-2,
LNCaP C4-2B, VCaP, v1 , LAPC4, MDA-PCa-2b, LuCaP 23.1 , LuCaP 58, LuCaP
70, LuCaP 77) are mixed with human lymphocytes (either human peripheral blood
mononuclear cells or purified T-cells) and injected aneously into immunodeficient
mice (such as SCID, NOD/SCID, etc). An anti-PSMA bispecific molecule is injected
intravenously on the day of injection and on several uent days. Dose-dependent
inhibition of tumor outgrowth, as assessed by tumor volume, indicates that the respective
molecule has efficacy against PSMA-expressing tumors in vivo.
Therapeutic treatment, or regression of previously established subcutaneous
tumors: Cultured, PSMA-expressing tumor cell lines (such as LNCaP, LNCaP C4-2,
LNCaP C4-2B, VCaP, CWR22Rv1 , LAPC4, MDA-PCa-2b, LuCaP 23.1AI, LuCaP 58, LuCaP
70, LuCaP 77) are injected aneously into immunodeficient mice (such as SCID,
NOD/SCID, etc). Tumor growth is monitored, and the study is initiated when tumors show
signs of established growth (typically a volume of ~200 mm3). Human lymphocytes r
human peripheral blood mononuclear cells or purified T-cells) are injected intravenously
along with an anti-PSMA bispecific molecule on the day of injection. The anti-PSMA
ific le is injected several subsequent days. Dose-dependent inhibition of tumor
growth, as assessed by tumor volume, indicates that the respective molecule has cy
against xpressing tumors in vivo.
Prophylactic treatment, or prevention of tumor engraftment of intra-tibial
: Cultured, PSMA-expressing tumor cell lines (such as LNCaP C4-2, LNCaP C4-2B,
VCaP, CWR22Rv1 , LAPC4, MDA-PCa-2b, LuCaP 23.1 , LuCaP 58, LuCaP 70, LuCaP 77)
are mixed with human lymphocytes (either human peripheral blood mononuclear cells or
purified T-cells) and ed intra-tibially into immunodeficient mice (such as SCID,
NOD/SCID, etc). An anti-PSMA bispecific molecule is injected intravenously on the day of
injection and on several subsequent days. Dose-dependent inhibition of tumor growth, as
assessed by serum biomarkers, radiography, fluorescent imaging, weight loss, and other
proxy measurements of tumor volume, indicates that the respective molecule has efficacy
against PSMA-expressing tumors in vivo.
Therapeutic ent, or regression of usly established intra-tibial
: Cultured, PSMA-expressing tumor cell lines (such as LNCaP C4-2, LNCaP C4-2B,
VCaP, CWR22Rv1 , LAPC4, a-2b, LuCaP 23.1AI, LuCaP 58, LuCaP 70, LuCaP 77)
are injected intra-tibially into immunodeficient mice (such as SCID, NOD/SCID, etc). Tumor
growtl is monitored, and the study is initiated when tumors show signs of established growth
(typically a volume of ~200 mm3). Human lymphocytes (either human peripheral blood
mononuclear cells or purified T-cells) are injected intravenously along with an anti-PSMA
bispecific molecule on the day of injection. The anti-PSMA bispecific molecule is injected
several uent days. Dose-dependent inhibition of tumor growth, as assessed by serum
biomarkers, radiography, fluorescent imaging, weight loss, and other proxy measurements of
tumor volume, indicates that the respective molecule has efficacy against PSMA expressing
tumors in vivo.
I
Claims (24)
1. A prostate-specific membrane antigen (PSMA)-binding ptide sing a humanized PSMA-binding domain wherein the PSMA binding domain comprises (i) an immunoglobulin light chain variable region comprising LCDR1, LCDR2, and LCDR3, and (ii) an immunoglobulin heavy chain variable region comprising HCDR1, HCDR2, and HCDR3, wherein the LCDR1, LCDR2 and LCDR3 has the amino acid sequences set forth in SEQ ID NO:15, 16 and 17, respectively, and the HCDR1, HCDR2, and HCDR3 has the amino acid sequences set forth in SEQ ID NO:9, 10 and 11, respectively.
2. The PSMA-binding polypeptide of claim 1, wherein said PSMA-binding ptide comprises from terminus to carboxyl-terminus (a) the PSMA binding domain, (b) a first hinge region, and (c) an immunoglobulin constant region.
3. The PSMA-binding polypeptide of claim 1, wherein said PSMA-binding polypeptide further comprises a second binding domain.
4. The inding polypeptide of claim 3, wherein the PSMA-binding polypeptide comprises, in order from amino-terminus to carboxyl-terminus or in order from carboxylterminus to amino-terminus (a) the PSMA g , (b) a first hinge region, (c) an immunoglobulin constant region, (d) a second hinge region, and (e) a second binding domain.
5. The PSMA-binding protein of claim 3 or 4, wherein the second binding domain is aminoterminal to the second hinge region. AH25(10245389_1):GCC
6. The PSMA-binding polypeptide of any one of the previous , wherein the immunoglobulin light chain variable region comprises an amino acid sequence that is at least 95% identical to the amino acid ce set forth in SEQ ID NO:5 or SEQ ID NO:23 and the heavy chain variable region comprises an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in SEQ ID NO:2, SEQ ID NO:25, or SEQ ID NO:27.
7. The inding polypeptide of any one of the previous claims, wherein the PSMA- binding domain competes for binding to human PSMA with a single chain Fv (scFv) having the amino acid sequence set forth in SEQ ID NO:21.
8. The PSMA-binding polypeptide of any one of claims 2-6, wherein the first hinge region is d from (i) a stalk region of a type II C lectin or (ii) an immunoglobulin hinge region.
9. The PSMA-binding polypeptide of any one of claims 4-7, wherein the second hinge region is derived from (i) a stalk region of a type II C lectin or (ii) an immunoglobulin hinge .
10. The PSMA-binding polypeptide of any one of the previous claims, wherein the PSMA- binding domain is a single chain Fv (scFv).
11. The PSMA-binding polypeptide of claim 10, wherein said scFv comprises an amino acid sequence that is at least 95% identical to the amino acid sequence set forth in SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:30, SEQ ID NO:31, SEQ ID NO:34, or SEQ ID NO:35.
12. The PSMA-binding polypeptide of any one of the preceding claims, wherein said PSMA- g polypeptide comprises an amino acid sequence that is at least 95% identical to the amino acid sequence set forth in SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:42, SEQ ID NO:43, SEQ ID NO:70, or SEQ ID NO:72. AH25(10245389_1):GCC
13. The inding polypeptide of any one of claims 3-12, wherein the second binding domain specifically binds a T cell, CD3, CD3ε or a T cell or (TCR) complex or a ent thereof.
14. The PSMA-binding polypeptide of claim 13, wherein the second g domain competes for g to CD3ε with a monoclonal antibody selected from the group consisting of CRIS-7 and HuM291.
15. The PSMA-binding polypeptide of claim 13 or 14, wherein the second binding domain ses an immunoglobulin light chain variable region and an immunoglobulin heavy chain variable region derived from a monoclonal antibody selected from the group consisting of CRIS- 7 and HuM291.
16. The PSMA-binding polypeptide of claim 15, wherein the light and heavy chain variable regions of the second binding domain are selected from the group consisting of (a) a light chain variable region comprising an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in residues 139-245 of SEQ ID NO:47 and a heavy chain variable region comprising an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in residues 1-121 of SEQ ID NO:47; and (b) a light chain variable region comprising an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in residues 634-740 of SEQ ID NO:78 and a heavy chain variable region comprising an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in residues 496-616 of SEQ ID NO:78.
17. The PSMA-binding polypeptide of claim 1, wherein said PSMA-binding polypeptide ses an amino acid sequence that is at least 95% or 100% identical to the amino acid sequence set forth in SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:74, SEQ ID NO:76, SEQ ID NO:78, SEQ ID NO:80, SEQ ID NO:82, SEQ ID NO:84, SEQ ID NO:158, SEQ ID NO:160, SEQ ID NO:162, or SEQ ID NO:164.
18. A c PSMA-binding protein comprising first and second polypeptide chains, wherein each of said polypeptide chains is the inding polypeptide of any one of the previous claims. AH25(10245389_1):GCC
19. An isolated c acid encoding the inding polypeptide of any one of the previous claims.
20. An isolated recombinant host cell comprising the nucleic acid of claim 19.
21. A composition comprising the PSMA-binding protein of claim 18; and a pharmaceutically acceptable carrier, diluent, or excipient.
22. A method for ng redirected T-cell cytotoxicity (RTCC) against a cell expressing prostate-specific membrane antigen (PSMA), the method comprising contacting said PSMA- expressing cell with the PSMA-binding protein of claim 13, wherein said contacting is under ions whereby RTCC against the PSMA-expressing cell is induced wherein the method is not a method of treatment for the purposes of therapy carried out on the human body.
23. Use of the c inding protein of claim 18 in the manufacture of a medicament for the treatment of a disorder in a subject characterized by overexpression of prostate-specific membrane antigen (PSMA).
24. The use according to claim 23, wherein the disorder is a cancer, a prostate disorder, a cular disorder, a prostate cancer, colorectal cancer, gastric cancer, castrate-resistant prostate cancer, benign prostatic hyperplasia, solid tumor growth, clear cell renal carcinoma, colorectal cancer, bladder cancer, or lung cancer.
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161478449P | 2011-04-22 | 2011-04-22 | |
| US61/478,449 | 2011-04-22 | ||
| PCT/US2012/034575 WO2012145714A2 (en) | 2011-04-22 | 2012-04-20 | Prostate-specific membrane antigen binding proteins and related compositions and methods |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| NZ616481A NZ616481A (en) | 2015-08-28 |
| NZ616481B2 true NZ616481B2 (en) | 2015-12-01 |
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