NZ621827B2 - Selective and reversible inhibitors of ubiquitin specific protease 7 - Google Patents
Selective and reversible inhibitors of ubiquitin specific protease 7 Download PDFInfo
- Publication number
- NZ621827B2 NZ621827B2 NZ621827A NZ62182712A NZ621827B2 NZ 621827 B2 NZ621827 B2 NZ 621827B2 NZ 621827 A NZ621827 A NZ 621827A NZ 62182712 A NZ62182712 A NZ 62182712A NZ 621827 B2 NZ621827 B2 NZ 621827B2
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- nrr
- alkylene
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- 125000003072 pyrazolidinyl group Chemical group 0.000 description 1
- 125000002755 pyrazolinyl group Chemical group 0.000 description 1
- 125000004076 pyridyl group Chemical group 0.000 description 1
- 125000000714 pyrimidinyl group Chemical group 0.000 description 1
- 125000000719 pyrrolidinyl group Chemical group 0.000 description 1
- 125000001422 pyrrolinyl group Chemical group 0.000 description 1
- 125000000168 pyrrolyl group Chemical group 0.000 description 1
- 150000003242 quaternary ammonium salts Chemical class 0.000 description 1
- 125000002943 quinolinyl group Chemical group N1=C(C=CC2=CC=CC=C12)* 0.000 description 1
- 239000011535 reaction buffer Substances 0.000 description 1
- 238000004064 recycling Methods 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- 230000002829 reductive effect Effects 0.000 description 1
- 238000001226 reprecipitation Methods 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 230000000717 retained effect Effects 0.000 description 1
- 238000004366 reverse phase liquid chromatography Methods 0.000 description 1
- 230000006965 reversible inhibition Effects 0.000 description 1
- 238000007142 ring opening reaction Methods 0.000 description 1
- CVHZOJJKTDOEJC-UHFFFAOYSA-N saccharin Chemical compound C1=CC=C2C(=O)NS(=O)(=O)C2=C1 CVHZOJJKTDOEJC-UHFFFAOYSA-N 0.000 description 1
- 229940081974 saccharin Drugs 0.000 description 1
- 235000019204 saccharin Nutrition 0.000 description 1
- 239000000901 saccharin and its Na,K and Ca salt Substances 0.000 description 1
- YGSDEFSMJLZEOE-UHFFFAOYSA-M salicylate Chemical compound OC1=CC=CC=C1C([O-])=O YGSDEFSMJLZEOE-UHFFFAOYSA-M 0.000 description 1
- 229960001860 salicylate Drugs 0.000 description 1
- 229920006395 saturated elastomer Polymers 0.000 description 1
- 239000012047 saturated solution Substances 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 229910052711 selenium Inorganic materials 0.000 description 1
- 239000011669 selenium Substances 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 239000004208 shellac Substances 0.000 description 1
- ZLGIYFNHBLSMPS-ATJNOEHPSA-N shellac Chemical compound OCCCCCC(O)C(O)CCCCCCCC(O)=O.C1C23[C@H](C(O)=O)CCC2[C@](C)(CO)[C@@H]1C(C(O)=O)=C[C@@H]3O ZLGIYFNHBLSMPS-ATJNOEHPSA-N 0.000 description 1
- 229940113147 shellac Drugs 0.000 description 1
- 235000013874 shellac Nutrition 0.000 description 1
- 230000019491 signal transduction Effects 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- QDRKDTQENPPHOJ-UHFFFAOYSA-N sodium ethoxide Chemical compound [Na+].CC[O-] QDRKDTQENPPHOJ-UHFFFAOYSA-N 0.000 description 1
- 239000012312 sodium hydride Substances 0.000 description 1
- 239000001488 sodium phosphate Substances 0.000 description 1
- 229910000162 sodium phosphate Inorganic materials 0.000 description 1
- 239000012064 sodium phosphate buffer Substances 0.000 description 1
- 229910052938 sodium sulfate Inorganic materials 0.000 description 1
- 235000011152 sodium sulphate Nutrition 0.000 description 1
- 239000007901 soft capsule Substances 0.000 description 1
- 238000000935 solvent evaporation Methods 0.000 description 1
- 230000006641 stabilisation Effects 0.000 description 1
- 238000011105 stabilization Methods 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 230000004936 stimulating effect Effects 0.000 description 1
- 238000003860 storage Methods 0.000 description 1
- 229960005322 streptomycin Drugs 0.000 description 1
- 230000035882 stress Effects 0.000 description 1
- 230000004960 subcellular localization Effects 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 125000000020 sulfo group Chemical group O=S(=O)([*])O[H] 0.000 description 1
- YBBRCQOCSYXUOC-UHFFFAOYSA-N sulfuryl dichloride Chemical compound ClS(Cl)(=O)=O YBBRCQOCSYXUOC-UHFFFAOYSA-N 0.000 description 1
- 239000000829 suppository Substances 0.000 description 1
- 239000000375 suspending agent Substances 0.000 description 1
- 239000000725 suspension Substances 0.000 description 1
- 238000013268 sustained release Methods 0.000 description 1
- 239000012730 sustained-release form Substances 0.000 description 1
- 239000012622 synthetic inhibitor Substances 0.000 description 1
- 239000006188 syrup Substances 0.000 description 1
- 235000020357 syrup Nutrition 0.000 description 1
- 239000000454 talc Substances 0.000 description 1
- 229910052623 talc Inorganic materials 0.000 description 1
- 229940033134 talc Drugs 0.000 description 1
- 235000012222 talc Nutrition 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 125000003718 tetrahydrofuranyl group Chemical group 0.000 description 1
- 125000005942 tetrahydropyridyl group Chemical group 0.000 description 1
- 125000004632 tetrahydrothiopyranyl group Chemical group S1C(CCCC1)* 0.000 description 1
- 125000001984 thiazolidinyl group Chemical group 0.000 description 1
- 125000000335 thiazolyl group Chemical group 0.000 description 1
- 125000004568 thiomorpholinyl group Chemical group 0.000 description 1
- 210000001519 tissue Anatomy 0.000 description 1
- 230000000699 topical effect Effects 0.000 description 1
- 231100000419 toxicity Toxicity 0.000 description 1
- 230000001988 toxicity Effects 0.000 description 1
- 238000001890 transfection Methods 0.000 description 1
- 238000012546 transfer Methods 0.000 description 1
- 230000009466 transformation Effects 0.000 description 1
- 238000000844 transformation Methods 0.000 description 1
- 230000014616 translation Effects 0.000 description 1
- 230000017105 transposition Effects 0.000 description 1
- 125000000876 trifluoromethoxy group Chemical group FC(F)(F)O* 0.000 description 1
- 125000000026 trimethylsilyl group Chemical group [H]C([H])([H])[Si]([*])(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- BPLKQGGAXWRFOE-UHFFFAOYSA-M trimethylsulfoxonium iodide Chemical compound [I-].C[S+](C)(C)=O BPLKQGGAXWRFOE-UHFFFAOYSA-M 0.000 description 1
- 239000001226 triphosphate Substances 0.000 description 1
- 235000011178 triphosphate Nutrition 0.000 description 1
- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 description 1
- RYFMWSXOAZQYPI-UHFFFAOYSA-K trisodium phosphate Chemical compound [Na+].[Na+].[Na+].[O-]P([O-])([O-])=O RYFMWSXOAZQYPI-UHFFFAOYSA-K 0.000 description 1
- 229960000281 trometamol Drugs 0.000 description 1
- 230000004614 tumor growth Effects 0.000 description 1
- 238000010798 ubiquitination Methods 0.000 description 1
- 238000000825 ultraviolet detection Methods 0.000 description 1
- 230000003827 upregulation Effects 0.000 description 1
- 238000011144 upstream manufacturing Methods 0.000 description 1
- 150000003672 ureas Chemical class 0.000 description 1
- 235000015112 vegetable and seed oil Nutrition 0.000 description 1
- 239000008158 vegetable oil Substances 0.000 description 1
- 229940099039 velcade Drugs 0.000 description 1
- 230000035899 viability Effects 0.000 description 1
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
- 238000012800 visualization Methods 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
- 238000001262 western blot Methods 0.000 description 1
- 239000000080 wetting agent Substances 0.000 description 1
- 239000008096 xylene Substances 0.000 description 1
- 239000011701 zinc Substances 0.000 description 1
- 229910052725 zinc Inorganic materials 0.000 description 1
Classifications
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- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/495—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
- A61K31/505—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
- A61K31/517—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with carbocyclic ring systems, e.g. quinazoline, perimidine
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- A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
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- C07D—HETEROCYCLIC COMPOUNDS
- C07D239/00—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
- C07D239/70—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings condensed with carbocyclic rings or ring systems
- C07D239/72—Quinazolines; Hydrogenated quinazolines
- C07D239/86—Quinazolines; Hydrogenated quinazolines with hetero atoms directly attached in position 4
- C07D239/88—Oxygen atoms
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- C07D239/00—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
- C07D239/70—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings condensed with carbocyclic rings or ring systems
- C07D239/72—Quinazolines; Hydrogenated quinazolines
- C07D239/86—Quinazolines; Hydrogenated quinazolines with hetero atoms directly attached in position 4
- C07D239/88—Oxygen atoms
- C07D239/91—Oxygen atoms with aryl or aralkyl radicals attached in position 2 or 3
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- C—CHEMISTRY; METALLURGY
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- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
- C07D401/06—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D409/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
- C07D409/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing three or more hetero rings
Abstract
Provided are dihydroquinazolinone derivative compounds of the formula (I’), wherein the variables are as defined in the specification. Examples of the compounds include 3-({4-hydroxy-1-[3-(2-methoxyphenyl)propanoyl]piperidin-4-yl}methyl)-3,4-dihydroquinazolin-4-one and 3-{[1-(2-benzylpropanoyl)-4-hydroxypiperidin-4-yl)methyl}-7-chloro-3,4-dihydroquinazolin-4-one. The compounds are selective and reversible inhibitors of ubiquitin specific protease 7. The compounds may be useful in the treatment of cancer, neurodegenerative diseases, inflammatory disorders and viral infections. droxypiperidin-4-yl)methyl}-7-chloro-3,4-dihydroquinazolin-4-one. The compounds are selective and reversible inhibitors of ubiquitin specific protease 7. The compounds may be useful in the treatment of cancer, neurodegenerative diseases, inflammatory disorders and viral infections.
Description
SELECTIVE AND REVERSIBLE INHIBITORS OF UBIQUITIN SPECIFIC
PROTEASE 7
The present invention concerns the discovery of new selective and reversible
inhibitors of ubiquitin specific proteases, their process of preparation and their therapeutic
use.
Ubiquitin specific proteases (USP) are cysteines proteases which belong to the
deubiquitinating enzymes (DUBs) family.
Deregulation of the ubiquitin-proteasome system has been implicated in the
pathogenesis of many human diseases, including cancer (Hoeller et al. Nat Rev Cancer
2006, 6(10), 776-788), neurodegenerative disorders (Rubinsztein, Nature 2006,
443(7113), 780-786) and viral diseases (Gao & Luo Can J Physiol Pharmacol 2006, 84(1),
-14). The market success of the proteasome inhibitor Velcade (bortezomib) for the
treatment of multiple myeloma and mantle cell lymphoma has established this system as
a valid target for cancer treatment (Adams, Nat Rev Cancer 2004, 4(5), 349-360). A
promising alternative to targeting the proteasome itself would be to interfere with the
upstream ubiquitin conjugation/deconjugation machinery, to generate more specific, less
toxic anticancer agents.
Mono- and polyubiquitination can be reversed by deubiquitinating enzymes, which
specifically cleave the isopeptide bond at the C-terminus of ubiquitin. Ubiquitin specific
proteases and ubiquitin C-terminal hydrolases (UCH) enzymes are the best characterized
members of the DUB family (Komander et al. Nat. Rev. Mol. Cell Biol. 2009, 10(8), 550-
63; Nijman et al. Cell 2005, 123(5), 773-786). UCHs are thought to cleave small protein
substrates preferentially and to be involved principally in the processing and recycling of
ubiquitin, but their specific functions remain poorly understood. USPs constitute the
largest subfamily of DUBs, with more than 60 members. They remove ubiquitin from
specific protein substrates, thus preventing their targeting to the proteasome or regulating
their subcellular localization and activation (Daviet & Colland, Biochimie 2008, 90(2), 270-
83). USPs are emerging as potential targets for pharmacological interference with the
ubiquitin regulation machinery, based on their protease activity and involvement in several
human diseases (Colland, Biochem Soc Trans 2010, 38, 137-43).
USP7 (Ubiquitin Specific Protease 7)/HAUSP (Herpes Associated Ubiquitin
Specific Protease) is a 135 kDa protein of the USP family. USP7 has been shown to
interact with viral proteins, such as ICP0 (Vmw 110), a herpes simplex virus immediate-
early gene stimulating initiation of the viral lytic cycle (Everett et al., J Virol 73, 1999,
417-426), and EBNA1 (Epstein-Barr Nuclear Antigen-1) (Holowaty et al., J Biol Chem
2003, 278, 29987-29994 and 47753-47761). Human proteins, such as p53 and the
major E3 ligase of p53, Mdm2, have also been identified as partners and substrates of
USP7 (Cummins et al. Nature 2004, 486, Cummins & Vogelstein, Cell Cycle, 2004, 3,
689-692; Li et al. Mol Cell 2004, 13, 879-886; Li et al. Nature 2002, 416, 648-653). More
generally USP7 can deubiquitinate different targets, including Mdm2 and p53, and the
net deubiquitination of these latter targets ultimately determines functional p53 levels.
Consistent with recent reports, USP7 silencing has also been shown to increase steady-
state p53 levels by promoting Mdm2 degradation. Binding of USP7 to p53 was recently
shown to be regulated by TSPYL5, a protein potentially involved in breast oncogenesis
through a competition with p53 for binding to the same region of USP7 (Epping et al.,
Nat Cell Biol. 2011, 13(1):102-8). More recently, both upregulation and downregulation
of USP7 have been shown to inhibit colon cancer cell proliferation in vitro and tumor
growth in vivo, by resulting in constitutively high p53 levels (Becker et al. Cell Cycle
2008, 7(9),1205-13).
INK4a
USP7 also alters the level of the p16 tumor suppressor through Bmi1/Mel18
stabilization (Maertens et al., Embo J. 2010, 29, 2553-2565). Additional proteins involved
in genomic integrity/regulation such as the DNMT1 DNA methylase and the Claspin
adaptor are also stabilized by USP7 (Du et al., Science Signaling 2010, 3(146):ra80;
Faustrup et al., J. Cell Biol. 2009,184(1):13-9). Importantly, the abundance of USP7 and
DNMT1, a protein involved in maintaining epigenetic methylation required to silence
genes involved in development and cancer, correlates in human colon cancer (Du et al.,
Science Signaling, 2010, 3(146):ra80). USP7 has also been shown in human cells to
deubiquitinate the well-known tumor suppressor gene PTEN, which provokes its nuclear
export and hence its inactivation (Song et al., Nature 2008, 455(7214), 813-7). More
importantly, USP7 overexpression was reported for the first time in prostate cancer and
this overexpression was directly associated with tumour aggressiveness (Song et al.,
Nature 2008, 455(7214), 813-7).
USP7 has also been shown in human cells to deubiquitinate FOXO4, which
provokes its nuclear export and hence its inactivation; consequently the oncogenic
PI3K/PKB signaling pathway was activated (van der Horst et al., Nat Cell Biol. 2006, 8,
1064-1073) Finally, USP7 plays an important role in p53-mediated cellular responses to
various types of stress, such as DNA damage and oxidative stress (Marchenko et al.,
Embo J. 2007 26, 923-934, Meulmeester et al., Mol Cell 2005, 18, 565-576., van der
Horst et al., Nat Cell Biol. 2006, 8, 1064-1073).
Synthetic inhibitors of USP7 protein binding containing the polypeptide portion P -
Gly-P -Ser, where P is a glutamic acid residue or an amino acid with a non polar side
chain and P is a glycine residue or an amino acid with non polar side chain, have been
reported (WO2006072048).
The phenotypes associated with USP7 silencing and the known connections
between USP7 and essential viral proteins and oncogenic pathways, such as the
p53/Mdm2 and PI3K/PKB pathways, strongly suggest that targeting USP7 with
small-molecule inhibitors may be beneficial in the treatment of cancers and viral diseases
(Sippl et al., Future Oncology 2011, 7, 619-32). Inhibitors against USP7 were recently
reported (Colland et al. Molecular Cancer Therapeutics 2009, 8, 2286-95 and EP
1 749 822 and .2).
However, to date, no specific and reversible USP7 small molecule inhibitors seem to
have been reported.
In this specification where reference has been made to patent specifications, other
external documents, or other sources of information, this is generally for the purpose of
providing a context for discussing the features of the invention. Unless specifically stated
otherwise, reference to such external documents is not to be construed as an admission
that such documents, or such sources of information, in any jurisdiction, are prior art, or
form part of the common general knowledge in the art.
In the description in this specification reference may be made to subject matter that
is not within the scope of the claims of the current application. That subject matter should
be readily identifiable by a person skilled in the art and may assist in putting into practice
the invention as defined in the claims of this application.
SUMMARY OF THE INVENTION
In a first aspect, the present invention provides a compound of formula (I’):
8 8'
(CR R )
(R )
L X' N A
N (CR R )
(I')
wherein
R , each identical or different, is chosen from the group consisting of halogen, R,
OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, NO , (C -C )alkylene-OR, (C -
3 2 1 6 1
C)alkylene-NRR’, (C -C )alkylene-COR, (C -C)alkylene-CONRR’, -O-(C -
6 1 6 2 1 6 1
C )alkylene-COR, -O-(C -C)alkylene-CONRR’, CO -(C -C)alkylene-OR, CO -
6 2 1 6 2 1 6 2
(C -C )alkylene-NRR’, C(O)NH-(C -C )alkylene-OR, CONH-(C -C )alkylene-NRR’,
1 6 1 6 1 6
11 10 11 11
OCF , SO R, SO H, SO NRR’, NHSO R, R C ≡CR , (R )(R )C=C(R ) , (C -
3 2 3 2 2 2 1
C6)alkylene-COR, NHCOR, or (C1-C6)alkyl interrupted by at least one heteroatom;
L is linear or branched (C -C )alkylene optionally substituted by one or more of
=O, CN, C(O)R, C(O)OR, or C(O)NRR’, or linear or branched CH (C -C )alkylene,
2 1 6
wherein the later (C1-C6)alkylene is optionally substituted by one or more of
halogen, OR, NRR’ or CF ;
q is 0, 1, 2, 3 or 4
X’ is CR ;
R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
OR , NRR’ or SR;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8’ 8
R , R , R and R , each identical or different, are chosen from the group consisting
of H, linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF ,
1 6 1 6 3
OR, C(O)R, C(O)OR or C(O)NRR’;
A is chosen from the group consisting of :
- -C(O)-;
- -C(O)NH-;
- SO -; or
- SO NH-;
L is linear or branched (C1-C6)alkylene optionally interrupted by at least one
heteroatom chosen from O, NR or S and/or optionally substituted by : R, OR,
NRR’, (C -C )alkyl-OR, (C -C )alkyl-NRR’, OC(O)R, NHC(O)R, NHC(O)NRR’, CN,
1 6 1 6
C(=NH)NHOR;
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle,
H, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and
is optionally substituted by one or more of linear or branched (C -C )alkyl, halogen,
NRR, CN, CF , OR, =O, C(O)R, C(O)OR, NHC(O)R, OC(O)R, linear or branched
(C -C )alkenylene or C(O)NRR’;
each R and R’, identical or different, are independently chosen from H, linear or
branched (C -C )alkyl, cycloalkyl, aryl, aromatic or non aromatic heterocycle, linear
or branched -(C -C )alkyl-aryl or linear or branched -(C -C )alkyl-heterocycle,
1 6 1 6
wherein the heterocycle is aromatic or non aromatic; optionally substituted or not
by OH, CO H, C(O)NH , NH
2 2 2
R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR, -
C(O)CH2-NRR’, -C(O)-CH2-CH2-CO2R, -C(O)-CH2-SO3H, -C(O)-(C5H4N), -PO3H2,
or their ionized form;
R independently is chosen from a bond, a linear or branched (C -C )alkyl;
R independently is chosen from an hydrogen atom, a linear or branched (C1-
C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH, NH , C(O)OH or
C(O)NH;
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers,
with the exception of
1 7 7 2 6
- q is 0, L is CH , X’ is CR and R is OH, A is C=O, L is C H and R is ;
2 2 4
1 1 7 7 2 6
- q is 1, R is Cl at position 7, L is CH , X’ is CR and R is OH, A is C=O, L R is
CH(CH CH ) .
2 3 2
In a second aspect, the invention relates to a process for preparing a compound of
formula (I') of the first aspect of the invention comprising the reaction of a compound of
formula (IIa) with a compound of formula (III)
8 8'
(CR R )
(R )
L X' NH
N (CR R )
Y(A) L R
(III)
(IIa)
1 3 4 5 6 8 8’ 1 2
wherein R , R , R , R , R , R , R , L , L , X’, A, q, n, p are defined above, and Y is a
leaving group.
In a third aspect, the invention relates to a process for preparing a compound of
formula I' of the first aspect of the invention comprising the reaction of a compound of
formula (IV) with a compound of formula (Va)
8 8'
(CR R )
(R )
N (A)
(CR R )
(IV)
(Va)
1 3 4 5 6 8 8 1 2
wherein R , R , R , R , R , R , R ’, L , L , X, A, q, n, p are defined above and Y is a
leaving group chosen from epoxy, halogen, and activated OH.
In a fourth aspect, the invention provides a pharmaceutical composition comprising
a compound of formula (I’)
8 8'
(CR R )
p 2 6
(R )
L X' N A
N (CR R )
(I')
wherein
R , each identical or different, is chosen from the group consisting of halogen, R,
OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, NO , (C -C )alkylene-OR, (C -
3 2 1 6 1
C)alkylene-NRR’, (C -C )alkylene-COR, (C -C)alkylene-CONRR’, -O-(C -
6 1 6 2 1 6 1
C )alkylene-COR, -O-(C -C)alkylene-CONRR’, CO -(C -C)alkylene-OR, CO -
6 2 1 6 2 1 6 2
(C -C )alkylene-NRR’, C(O)NH-(C -C )alkylene-OR, CONH-(C -C )alkylene-NRR’,
1 6 1 6 1 6
11 10 11 11
OCF , SO R, SO H, SO NRR’, NHSO R, R C ≡CR , (R )(R )C=C(R ) , (C -
3 2 3 2 2 2 1
C )alkylene-COR, NHCOR, or (C -C )alkyl interrupted by at least one heteroatom;
6 1 6
L is linear or branched (C -C )alkylene optionally substituted by one or more of
=O, CN, C(O)R, C(O)OR, or C(O)NRR’, or linear or branched CH (C -C )alkylene,
2 1 6
wherein the later (C -C )alkylene is optionally substituted by one or more of
halogen, OR, NRR’ or CF ;
q is 0, 1, 2, 3 or 4
X’ is CR ;
R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
OR , NRR’ or SR;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8’ 8
R , R , R and R , each identical or different, are chosen from the group consisting
of H, linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF ,
1 6 1 6 3
OR, C(O)R, C(O)OR or C(O)NRR’;
A is chosen from the group consisting of :
- -C(O)-;
- -C(O)NH-;
- SO -; or
- SO NH-;
L is linear or branched (C -C )alkylene optionally interrupted by at least one
heteroatom chosen from O, NR or S and/or optionally substituted by : R, OR,
NRR’, (C -C )alkyl-OR, (C -C )alkyl-NRR’, OC(O)R, NHC(O)R, NHC(O)NRR’, CN,
1 6 1 6
C(=NH)NHOR
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle,
H, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and
is optionally substituted by one or more of linear or branched (C -C )alkyl, halogen,
NRR, CN, CF , OR, =O, C(O)R, C(O)OR, NHC(O)R, OC(O)R, linear or branched
(C -C )alkenylene or C(O)NRR’;
each R and R’, identical or different, are independently chosen from H, linear or
branched (C -C )alkyl, cycloalkyl, aryl, aromatic or non aromatic heterocycle, linear
or branched -(C -C )alkyl-aryl or linear or branched -(C -C )alkyl-heterocycle,
1 6 1 6
wherein the heterocycle is aromatic or non aromatic; optionally substituted or not
by OH, CO H, C(O)NH , NH
2 2 2
R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR, -
C(O)CH -NRR’, -C(O)-CH -CH -CO R, -C(O)-CH -SO H, -C(O)-(C H N), -PO H ,
2 2 2 2 2 3 5 4 3 2
or their ionized form;
R independently is chosen from a bond, a linear or branched (C -C )alkyl;
R independently is chosen from an hydrogen atom, a linear or branched (C -
C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH, NH , C(O)OH or
C(O)NH;
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers,
with a pharmaceutically acceptable excipient.
In a fifth aspect, the invention relates to a use of a compound of formula (I’) of the
fourth aspect, in the manufacture of a medicament for inhibiting a deubiquitinating
enzyme.
In a sixth aspect, the invention relates to a use of a compound of formula (I') of the
fourth aspect, in the manufacture of a medicament for Alzheimer’s disease and
Parkinson’s disease, immunological disorders, diabetes, bone and joint diseases,
osteoporosis, arthritis inflammatory disorders, cardiovascular diseases, viral infections
and diseases, and/or viral infectivity and/or latency, bacterial infections and diseases.
Also described is a compound of formula (I') of the fourth aspect of the invention, for
use for treating and/or preventing cancer and metastasis, neurodegenerative diseases,
immunological disorders, diabetes, bone and joint diseases, osteoporosis, arthritis
inflammatory disorders, cardiovascular diseases, viral infections and diseases, and/or viral
infectivity and/or latency, bacterial infections and diseases.
In an eighth aspect, the invention also provides a combination comprising a
compound of formula (I') of the fourth aspect of the invention, with one or more active
agents chosen from anti-cancer agents, neurological agents, thrombolytic agents,
antioxidant agents, anti-diabetes agents, anti-infective, anti-hypertensive agents, diuretic
agents, thrombolytic agents, immunosuppressive agents, cardiovascular agents,
immunomodulatory agents, anti-inflammatory agents, antiviral agents, and anti-bacterial
agents.
DESCRIPTION OF THE INVENTION
Described is a compound of formula (I):
(R ) 5
N (A)
6 L R
N (CR R )
wherein
R , each identical or different, is chosen from the group consisting of halogen, R,
OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, NO , (C -C )alkylene-OR, (C -
3 2 1 6 1
C)alkylene-NRR’, (C -C )alkylene-COR, (C -C)alkylene-C(O)NRR’, -O-(C -
6 1 6 2 1 6 1
C )alkylene-CO R, -O-(C -C )alkylene-C(O)NRR’, CO -(C -C )alkylene-OR, CO -
6 2 1 6 2 1 6 2
(C -C)alkylene-NRR’, C(O)NH-(C -C)alkylene-OR, C(O)NH-(C -C )alkylene-
1 6 1 6 1 6
11 10 11 11
NRR’, OCF , SO R, SO H, SO NRR’, NHSO R, R C ≡CR , (R )(R )C=C(R ) ,
3 2 3 2 2 2
(C -C )alkylene-C(O)R, NHC(O)R, or (C -C )alkyl interrupted by at least one
1 6 1 6
heteroatom, preferably chosen among O, N or S, preferably O;
L is linear or branched (C -C )alkylene optionally substituted by one or more of
=O, CN, C(O)R, C(O)OR, or C(O)NRR’, or linear or branched CH (C -C )alkylene,
2 1 6
wherein the later (C -C )alkylene is optionally substituted by one or more of
halogen, OR, NRR’ or CF ;
2 7 2
X is CR R , NR , aryl, heteroaryl, cycloalkyl or heterocycle, wherein the aryl,
heteroaryl, cycloalkyl or heterocycle is optionally substituted by one or more of
linear or branched C -C (alkyl), halogen, OR, NRR, CN, CF , C(O)R, C(O)OR or
1 6 3
C(O)NRR’;
R is a linear or branched (C -C )alkylene and is linked together with R =linear or
branched (C -C )alkylene to form with –X-(CR R ) -N-, to which they are attached,
1 6 n
an heterocycle, preferably a heterocycle having 5 to 7 members, optionally
substituted by one or more of OR, linear or branched (C -C )alkyl, halogen, NRR ,
CN, CF , C(O)R, C(O)OR, C(O)NRR’, or =O;
R , is chosen among H and linear or branched (C -C )alkyl, (C -C )alkylene;
1 6 1 6
R , R , each identical or different, are chosen in the group consisting of H, linear or
branched (C -C )alkyl, halogen, OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’
1 6 3
or =O;
q is 0, 1, 2, 3 or 4
n is 0, 1, 2 or 3;
R is OR, H, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
OR , NRR’ or SR;
i is either 0 or 1;
A is chosen from the group consisting of :
- linear or branched –[C -C (alkyl)] -C(O)-;
1 6 0-1
- linear or branched –[C -C (alkyl)] -C(O)NH-;
1 6 0-1
- linear or branched -[C -C (alkyl)] SO -; or
1 6 0-1 2
- linear or branched –[C -C (alkyl)] SO NH-;
1 6 0-1 2
L is linear or branched (C -C )alkylene-O or a linear or branched (C -C )alkylene
1 6 1 6
optionally interrupted by at least one heteroatom chosen from O, NR or S and/or
optionally substituted by: R, OR, NRR’, (C -C)alkyl-OR, (C -C )alkyl-NRR’,
1 6 1 6
OC(O)R, NHC(O)R, NHC(O)NRR’, CN, C(=NH)NHOR;
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle,
H, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and
is optionally substituted by one or more of linear or branched (C -C )alkyl, halogen,
NRR, CN, CF3, OR, =O, C(O)R, C(O)OR, NHC(O)R, OC(O)R, linear or branched
(C -C )alkenylene or C(O)NRR’;
R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR,
-C(O)CH2-NRR’, -C(O)-CH2-CH2-CO2R, -C(O)-CH2-SO3H, -C(O)-(C5H4N), -PO3H2,
or their ionized form;
R independently identical or different is chosen from a bond, a linear or branched
(C -C )alkyl;
R independently identical or different is chosen from an hydrogen atom, a linear
or branched (C -C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH,
NH , C(O)OH or C(O)NH ;
each R and R’, identical or different, are independently chosen from H, linear or
branched (C -C )alkyl, cycloalkyl, aryl, aromatic or non aromatic heterocycle, linear
or branched -(C -C )alkyl-aryl or linear or branched -(C -C )alkyl-heterocycle,
1 6 1 6
wherein the heterocycle is aromatic or non aromatic; optionally substituted or not
by OH, CO H, C(O)NH , NH
2 2 2
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers.
The formula (I) described above refers to any of the following embodiments or any of their
combinations.
Preferably, in compound of formula (I), R , each identical or different, is chosen from the
group consisting of linear or branched (C -C )alkyl, halogen, OR, NRR, CN, CF , C(O)R,
1 6 3
C(O)OR, C(O)NRR’; NO ; (C -C )alkylene-OR, (C -C )alkylene-NRR’, (C -C )alkylene-
2 1 6 1 6 1 6
COR, (C -C)alkylene-C(O)NRR’, -O-(C -C )alkylene-COR, -O-(C -C )alkylene-
2 1 6 1 6 2 1 6
C(O)NRR’, CO -(C -C )alkylene-OR, CO -(C -C )alkylene-NRR’, C(O)NH-(C -C )alkylene-
2 1 6 2 1 6 1 6
OR, C(O)NH-(C -C )alkylene-NRR’ or NHC(O)R.
Preferably, in compound of formula (I), L is linear or branched (C -C )alkylene optionally
substituted by one or more of =O, CN, C(O)R, C(O)OR, or C(O)NRR’; or linear or
branched CH (C -C )alkylene, wherein the later (C -C )alkylene is optionally substituted
2 1 6 1 6
by one or more of halogen, OR, NRR’ or CF .
Preferably, in compound of formula (I), R is a linear or branched (C -C )alkylene and is
3 4
linked together with R =linear or branched (C -C )alkylene to form with –X-(CR R ) -N-, to
1 6 n
which they are attached, an heterocycle of 5 or 6 members optionally substituted by one
or more of OR, linear or branched (C -C )alkyl, halogen, NRR, CN, CF , C(O)R, C(O)OR,
1 6 3
C(O)NRR’, or =O.
Preferably, in compound of formula (I), R is OR, OR , halogen, linear or branched (C -
C )alkyl-OR, C(O)OR, C(O)NRR’ or CN. More preferably R is OR, OR . More preferably
R is OH or OR , preferably OH.
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle, H,
wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and is
optionally substituted by one or more of linear or branched (C -C )alkyl, halogen, NRR ,
CN, CF , OR, C(O)R, C(O)OR, NHC(O)R, OC(O)R or C(O)NRR’.
Preferably, in compound of formula (I), A is chosen from the group consisting of:
- -C(O)-;
- -C(O)NH-;
- -SO -; or
- -SO N-.
Preferably, in compound of formula (I), L is linear or branched (C -C )alkylene optionally
interrupted by at least one heteroatom chosen from O, NR or S and/or optionally
substituted by : R, OR, NRR’, (C1-C6)alkyl-OR, (C1-C6)alkyl-NRR’, OC(O)R, NHC(O)R,
NHC(O)NRR’, CN, C(=NH)NHOR.
Preferably, it should be understood that L does not represent O-(C -C )alkylene.
2 1 6
Preferably, in compound of formula (I):
- NR is directly bonded to at least one of C(O), C(O)N, SO or SO N groups; and/or
3 4 5
- i=0, n is 1, 2 or 3 and the CR R linked to NR is C(O); or i=1, A is -C(O)-, C(O)NH, SO
or SO N; and/or
3 4 5
- i=0, n is 1, 2 or 3 and the CR R linked to NR is C(O); or i=1, A is -C(O)-, C(O)NH, SO
2 7 2 2 5
or SO N, X is CR R or NR and R and R , identical or different, are linear or branched
(C -C )alkylene and form together with –X-(CR R ) -N-, to which they are attached, an
1 6 n
heterocycle of 5 to 7 members optionally substituted by one or more of OR, linear or
’ 3 4
branched (C -C )alkyl, halogen, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’ and R , R ,
1 6 3
each identical or different, are chosen in the group consisting of H, linear or branched (C -
C )alkyl, halogen, OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’; and/or
2 7 2 2 5
- i=1 and A is –C(O)-, X is CR R or NR and R and R , identical or different, are linear or
branched (C -C )alkylene and form together with –X-(CR R ) -N-, to which they are
1 6 n
attached, an heterocycle of 5 to 7 members optionally substituted by one or more of OR,
linear or branched (C -C )alkyl, halogen, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’ and
1 6 3
R , R , each identical or different, are chosen in the group consisting of H, linear or
branched (C -C )alkyl, halogen, OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’; and/or
1 6 3
- R , each identical or different, is chosen from the group consisting of linear or branched
(C -C )alkyl, halogen, OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, or NHC(O)R;
1 6 3
and/or
- R , each identical or different, is chosen from the group consisting of linear or branched
C1-C6(alkyl), halogen, OH or linear or branched -O-(C1-C6)alkyl; and or
- R , each identical or different, is chosen from the group consisting of halogen or linear or
branched -O-(C1-C6)alkyl; and/or
- q is 0, 1 or 2; and/or
2 7 2 2 5
- X is CR R or NR and R and R , identical or different, are linear or branched (C -
C )alkylene and form together with –X-(CR R ) -N-, to which they are attached, an
heterocycle of 5 to 7 members optionally substituted by one or more of OR, linear or
branched (C -C)alkyl, halogen, NRR, CN, CF, C(O)R, C(O)OR, or C(O)NRR’.
1 6 3
2 3 4 5
Preferably, the heterocycle formed by –XR -(CR R ) -NR - is a non aromatic heterocycle;
and/or
- R , R , each identical or different, are chosen in the group consisting of H, linear or
branched (C -C )alkyl, halogen, =O, OR, NRR, CN, CF , C(O)R, C(O)OR or C(O)NRR’;
1 6 3
and/or
- R , R , each identical or different, are chosen in the group consisting of H, -O-(C -
C )alkyl, OH and =O. Preferably, R , R , each identical or different, are chosen in the
group consisting of H and OH; and/or
2 7 7 9
- X is CR R , or aryl and R is OR, OR , linear or branched (C -C )alkyl-OR, halogen,
2 7 7 9
C(O)OH, NRR’, C(O)NH or SR . Preferably, X is CR R , or aryl and R is OR, OR , NRR’
7 9 9
or SR. More preferably, R is OH or OR , preferably OH. R being as defined above;
and/or
- X is an aryl, preferably phenyl and/or
- L is linear or branched C -C (alkylene) optionally substituted by one or more =O or is
linear or branched CH -C -C (alkylene), wherein the later alkylene is optionally substituted
2 1 6
by one or more –OH; and/or
- L is linear or branched C -C (alkylene)-O or linear or branched C -C (alkylene)
1 6 1 6
optionally interrupted by at least one heteroatom chosen from O or S and/or optionally
substituted by one or more of : R, OR, NRR’, (C1-C6)alkyl-OR, (C1-C6)alkyl-NRR’,
OC(O)R, NHC(O)R, NHC(O)NRR’, CN, C(=NH)NHOR;. More preferably L is linear or
branched C -C (alkylene) or linear or branched -[C -C (alkylene)]-O-; and/or
1 6 1 6
- R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl or H, wherein the
aryl, heteroaryl or cycloalkyl is optionally substituted by halogen, linear or branched O-(C -
C )alkyl; and/or
- R is chosen from the group consisting in phenyl, thiophenyl, cyclopentyl and H, wherein
the phenyl is optionally substituted by halogen, linear or branched O-(C -C )alkyl.
2 7 2 2 5
In one embodiment, in the compound of formula (I), X is CR R or NR and R and R form
together with –X-(CR R ) -N- to which they are attached an heterocycle of 5 to 7 members
optionally substituted by one or more OH. Preferably, in this particular embodiment, n is 0,
2 7 7 9
1 or 2 and/or X is CR R wherein R is OR, OR , linear or branched (C -C )alkyl-OR,
halogen, C(O)OH, C(O)NH , NRR’ or SR, and/or L is (CH ) , wherein k is 1 or 2,
2 2 k
preferably k is 1, -C(O)-, -CH -CH(OH)- or -CH -C(O)-. Preferably R is OR, OR , NRR’ or
7 9 9
SR. More preferably, R is OH or OR , preferably OH. R being as defined above.
In another embodiment, in the compound of formula (I), X is aryl, heteroaryl, cycloalkyl or
heterocycle, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is optionally substituted
by one or more of linear or branched C -C (alkyl), halogen, OR, NRR, CN, CF , C(O)R,
1 6 3
C(O)OR or C(O)NRR’, preferably X is aryl and R is H or linear or branched C -C (alkyl),
preferably H. Preferably, in this particular embodiment, n is 0 and/or X is aryl and/or L is –
CH -CH(OH)-.
Compounds described may be of the following formula (Ia)
(CR )
p 2 6
(R ) 1
L X'
N (CR R )
(Ia)
wherein
1 1 2 6 7
R , q, L , L , R and R are as defined in formula (I);
X’ is CR or N;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8
R , R and R , each identical or different, are chosen in the group consisting of H,
linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF , OR,
1 6 1 6 3
C(O)R, C(O)OR or C(O)NRR’.
3 4 8
Preferably in the compound of formula (Ia), R , R and R , each identical or different, are
chosen in the group consisting of H or OH; and/or p is 1 or 2.
Preferably in compound of formula (Ia)
(R )
8 (R )
(R )
(R )
(CR )
3 4 or
(CR R )
is ,
(R )
t is 0, 1 or 2 preferably
wherein R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
9 9 9
OR , NRR’ or SR, more preferably OR, OR , NRR’ or SR, preferably OH or OR , p is 1 or
2 and R is chosen in the group consisting of H or OH.
Compounds described may also be of the following formula (Ia)
8 8'
(CR R )
(R )
L X' N
N (CR R )
(Ia)
wherein
1 1 2 6 7
R , q, L , L , R and R are as defined in formula (I);
X’ is CR or N;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8 8
R , R , R and R ’, each identical or different, are chosen in the group consisting of
H, linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF ,
1 6 1 6 3
OR, C(O)R, C(O)OR or C(O)NRR’.
3 4 8 8
Preferably in the compound of formula (Ia), R , R , R and R ’, each identical or different,
are chosen in the group consisting of H or OH; and/or p is 1 or 2.
Preferably in compound of formula (Ia)
(R )
8 (R )
8 8') t
(R ) (R )
(CR R t
3 4 7
(CR R ) R
is , t
(R )
is 0, 1 or 2 preferably
wherein R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
9 9 9
OR , NRR’ or SR, more preferably OR, OR , NRR’ or SR, preferably OH or OR , p is 1 or
2 and R is chosen in the group consisting of H or OH.
Compounds described may also be of the following formula (Ib)
(R )
L X N
(Ib)
wherein
1 2 6
R , q, L and R are as defined for compounds of formula (I);
X is aryl, heteroaryl, cycloalkyl or heterocycle, wherein the aryl, heteroaryl,
cycloalkyl or heterocycle is optionally substituted by one or more of linear or
branched C1-C6(alkyl), halogen, OH, linear or branched -O-(C1-C6)alkyl, NRR, CN,
CF , OR, C(O)R, C(O)OR or C(O)NRR’;
R is H or linear or branched (C -C )alkyl;
L is linear or branched (C -C )alkyl substituted by one or more OH.
Preferably in compound of formula (Ib), X is phenyl.
Preferably in compound of formula (Ib), R is H.
Compounds of the invention are of the following formula (I’)
8 8'
(CR R )
(R )
L X' N A
N (CR R )
(I')
wherein
R , each identical or different, is chosen from the group consisting of halogen, R,
OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, NO , (C -C )alkylene-OR, (C -
3 2 1 6 1
C)alkylene-NRR’, (C -C )alkylene-COR, (C -C)alkylene-CONRR’, -O-(C -
6 1 6 2 1 6 1
C )alkylene-COR, -O-(C -C)alkylene-CONRR’, CO -(C -C)alkylene-OR, CO -
6 2 1 6 2 1 6 2
(C -C )alkylene-NRR’, C(O)NH-(C -C )alkylene-OR, CONH-(C -C )alkylene-NRR’,
1 6 1 6 1 6
11 10 11 11
OCF3, SO2R, SO3H, SO2NRR’, NHSO2R, R C ≡CR , (R )(R )C=C(R )2, (C1-
C )alkylene-COR, NHCOR, or (C -C )alkyl interrupted by at least one heteroatom,
6 1 6
preferably chosen from O, N and S, preferably O;
L is linear or branched (C -C )alkylene optionally substituted by one or more of
=O, CN, C(O)R, C(O)OR, or C(O)NRR’, or linear or branched CH (C -C )alkylene,
2 1 6
wherein the later (C -C )alkylene is optionally substituted by one or more of
halogen, OR, NRR’ or CF ;
q is 0, 1, 2, 3 or 4
X’ is CR ;
R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
OR , NRR’ or SR;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8’ 8
R , R , R and R , each identical or different, are chosen from the group consisting
of H, linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF ,
1 6 1 6 3
OR, C(O)R, C(O)OR or C(O)NRR’;
A is chosen from the group consisting of :
- -C(O)-;
- -C(O)NH-;
- SO -; or
- SO NH-.
is linear or branched (C -C )alkylene optionally interrupted by at least one
L 1 6
heteroatom chosen from O, NR or S and/or optionally substituted by : R, OR,
NRR’, (C -C )alkyl-OR, (C -C )alkyl-NRR’, OC(O)R, NHC(O)R, NHC(O)NRR’, CN,
1 6 1 6
C(=NH)NHOR;
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle,
H, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and
is optionally substituted by one or more of linear or branched (C -C )alkyl, halogen,
NRR, CN, CF , OR, =O, C(O)R, C(O)OR, NHC(O)R, OC(O)R, linear or branched
(C2-C6)alkenylene or C(O)NRR’;
each R and R’, identical or different, are independently chosen from H, linear or
branched (C -C )alkyl, cycloalkyl, aryl, aromatic or non aromatic heterocycle, linear
or branched -(C1-C6)alkyl-aryl or linear or branched -(C1-C6)alkyl-heterocycle,
wherein the heterocycle is aromatic or non aromatic; optionally substituted or not
by OH, CO H, C(O)NH , NH
2 2 2
R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR, -
C(O)CH -NRR’, -C(O)-CH -CH -CO R, -C(O)-CH -SO H, -C(O)-(C H N), -PO H ,
2 2 2 2 2 3 5 4 3 2
or their ionized form;
R independently is chosen from a bond, a linear or branched (C -C )alkyl;
R independently is chosen from an hydrogen atom, a linear or branched (C -
C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH, NH , C(O)OH or
C(O)NH;
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers,
with the exception of
1 7 7 2 6
- q is 0, L is CH , X’ is CR and R is OH, A is C=O, L is C H and R is ;
2 2 4
1 1 7 7
- - q is 1, R is Cl at position 7, L is CH , X’ is CR and R is OH, A is C=O,
L R is CH(CH CH ) .
2 3 2
3 4 8 8
Preferably, in the compounds of formula (I’), R , R , R and R ’, each identical or different,
are chosen in the group consisting of H or OH, and/or p is 1 or 2.
Preferably, in the compounds of formula (I’) R is OR, halogen, linear or branched (C -
C )alkyl-OR, C(O)OR, C(O)NRR’, CN, more preferably OH.
Preferably, in the compounds of formula (I’) R is OR, OR , NRR’ or SR, more preferably
7 9 9
R is OR, OR , preferably OH or OR , for example OH.
Preferably, in the compounds of formula (I’) p+n = 4; more preferably p is 2 and n is 2.
8 8')
(CR R
(CR R )
Preferably in compound of formula (I’) is .
Preferably, in the compounds of formula (I’) L is CH .
Preferably, in the compounds of formula (I’) p is 2 and n is 2, R is OR, OR , NRR’ or SR,
7 9 9
more preferably R is OR, OR , preferably OH or OR , for example OH.
Preferably, in the compounds of formula (I’) p is 2 and n is 2, and L is CH
1 7 9
Preferably, in the compounds of formula (I’) L is CH and R is OR, OR , NRR’ or SR,
7 9 9
more preferably R is OR, OR , preferably OH or OR , for example OH.
1 7 7
Preferably, in the compounds of formula (I’) p is 2 and n is 2, L is CH , R is R is OR,
9 7 9 9
OR , NRR’ or SR, more preferably R is OR, OR , preferably OH or OR , for example OH.
According to a particular embodiment, in the compounds of formula (I’) A is C=O, the
compound is thus of the following formula (Ia’)
8 8'
(CR R )
(R )
L X' N
N (CR R )
(Ia')
1 1 3 4 8 8’ 2 6 7
wherein R , q, L , n, p, X’, R , R , R , R , L , R and R are as defined in formula (I’).
8 8')
(CR R
(CR R )
Preferably in compound of formula (Ia’) is .
Described are compounds of formula (I) as defined above with the exception of the
following compound:
1 3 4 5 2 7 7
- q is 0, L is CH , X-(CR R ) -NR forms a piperidine, X is CR R and R is OH, i is 1, A is
2 6 3
C=O, L is C H and R is ;
1 1 3 4 5 2 7
- q is 1, R is Cl at position 7, L is CH , X-(CR R ) -NR forms a piperidine, X is CR R
7 2 6
and R is OH, i is 1, A is C=O, L R is CH(CH CH ) .
2 3 2
According to a specific embodiment, the compounds of formula (I) are chosen from:
3-({4-hydroxy[3-(2-methoxyphenyl)propanoyl]piperidinyl}methyl)-3,4-
dihydroquinazolinone
7-chloro{[1-(2-ethylbutanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolin
3-({1-[2-(3-fluorophenoxy)acetyl]hydroxypiperidinyl}methyl)-3,4-dihydroquinazolin
one
3-{[4-hydroxy(2-methylpropanoyl)piperidinyl]methyl}-6,7-dimethoxy-3,4-
dihydroquinazolinone
3-{[4-hydroxy(2-methylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolinone
4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidinyl}methyl)-3,4-
dihydroquinazolinone
7-chloro{[1-(3-cyclopentylpropanoyl)hydroxypiperidinyl]methyl}-3,4-
dihydroquinazolinone
3-{[1-(3-cyclopentylpropanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolin
7-chloro{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolin-
4-one
3-{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolinone
7-chloro({4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidinyl}methyl)-3,4-
dihydroquinazolinone
3-({4-hydroxy[3-(thiophenyl)propanoyl]piperidinyl}methyl)-3,4-dihydroquinazolin
3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolinone
3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}chloro-3,4-dihydroquinazolin-
4-one,
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers.
As used hereabove or hereafter:
"Alkyl" means an aliphatic hydrocarbon group which may be straight or branched
having 1 to 6 carbon atoms in the chain. "Branched" means that one or more lower alkyl
groups such as methyl, ethyl or propyl are attached to a linear alkyl chain. Exemplary alkyl
groups include methyl, ethyl, n-propyl, i-propyl, n-butyl, t-butyl, n-pentyl, 3-pentyl.
As used herein, the term “cycloalkyl” refers a non aromatic monocyclic or multicyclic
hydrocarbon ring of 3 to 10 carbon atoms formed by the removal of one hydrogen atom. A
designation such as "C -C cycloalkyl" refers to a cycloalkyl radical containing from 5 to 7
carbon atoms. Examples include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl,
adamantyl, etc. as well as the systems formed by their condensation or by the condensation
with a phenyl group.
"Alken" or alkenyl means an aliphatic hydrocarbon group containing a carbon-carbon
double bond and which may be straight or branched having 2 to 6 carbon atoms in the
chain. Preferred alkenyl groups have 2 to 6 carbon atoms in the chain; and more
preferably about 2 to 4 carbon atoms in the chain. Exemplary alkenyl groups include
ethenyl, propenyl, n-butenyl, i-butenyl, 3-methylbutenyl, n-pentenyl.
"Halogen atom" refers to fluorine, chlorine, bromine or iodine atom; preferably
fluorine and chlorine atom.
"Aryl" means an aromatic monocyclic or multicyclic hydrocarbon ring system of 6 to
14 carbon atoms, preferably of 6 to 10 carbon atoms, substituted or not. Exemplary aryl
groups include phenyl or naphthyl.
As used herein, the terms “heterocycle” or “heterocyclic” refer to a saturated, partially
unsaturated or unsaturated, non aromatic stable 3 to 14, preferably 5 to 10-membered mono,
bi or multicyclic rings wherein at least one member of the ring is a hetero atom, substituted or
not. Typically, heteroatoms include, but are not limited to, oxygen, nitrogen, sulfur, selenium,
and phosphorus atoms. Preferable heteroatoms are oxygen, nitrogen and sulfur.
Suitable heterocycles are also disclosed in The Handbook of Chemistry and Physics,
76 Edition, CRC Press, Inc., 1995-1996, p. 2-25 to 2-26, the disclosure of which is hereby
incorporated by reference. Example of aromatic heterocycle is thiophenyl.
Preferred non aromatic heterocyclic include, but are not limited to pyrrolidinyl,
pyrazolidinyl, imidazolidinyl, oxiranyl, tetrahydrofuranyl, dioxolanyl, tetrahydro-pyranyl,
dioxanyl, dioxolanyl, piperidyl, piperazinyl, morpholinyl, pyranyl, imidazolinyl, pyrrolinyl,
pyrazolinyl, thiazolidinyl, tetrahydrothiopyranyl, dithianyl, thiomorpholinyl, dihydro-pyranyl,
tetrahydropyranyl, dihydropyranyl, tetrahydro-pyridyl, dihydropyridyl, tetrahydropyrinidinyl,
dihydrothiopyranyl, azepanyl, as well as the fused systems resulting from the condensation
with a phenyl group, each substituted or not.
As used herein, the term “heteroaryl” or aromatic heterocycles refers to a 5 to 14,
preferably 5 to 10-membered aromatic hetero, mono-, bi- or multicyclic ring. Examples include
pyrrolyl, pyridyl, pyrazolyl, thienyl, pyrimidinyl, pyrazinyl, tetrazolyl, indolyl, quinolinyl, purinyl,
imidazolyl, thienyl, thiazolyl, benzothiazolyl, furanyl, benzofuranyl, 1,2,4-thiadiazolyl,
isothiazolyl, triazoyl, tetrazolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, carbazolyl,
benzimidazolyl, isoxazolyl, pyridyl-N-oxide , as well as the fused systems resulting from the
condensation with a phenyl group.
"Alkyl", "cycloalkyl", "aryl", "heteroaryl", "heterocycle" and the likes refers also to the
corresponding "alkylene", "cycloalkylene", "arylene", "heteroarylene", "heterocyclene" and the
likes which are formed by the removal of two hydrogen atoms. Alkyl and alkylene are used
herein interchangeably.
As used herein, the term "patient" refers to either an animal, such as a valuable animal
for breeding, company or preservation purposes, or preferably a human or a human child,
which is afflicted with, or has the potential to be afflicted with one or more diseases and
conditions described herein.
As used herein, a "therapeutically effective amount" refers to an amount of a compound
of the present invention which is effective in preventing, reducing, eliminating, treating or
controlling the symptoms of the herein-described diseases and conditions. The term
"controlling" is intended to refer to all processes wherein there may be a slowing, interrupting,
arresting, or stopping of the progression of the diseases and conditions described herein, but
does not necessarily indicate a total elimination of all disease and condition symptoms, and is
intended to include prophylactic treatment.
As used herein, the expression “pharmaceutically acceptable” refers to those
compounds, materials, excipients, compositions or dosage forms which are, within the scope
of sound medical judgment, suitable for contact with the tissues of human beings and animals
without excessive toxicity, irritation, allergic response or other problem complications
commensurate with a reasonable benefit/risk ratio.
As used herein, “pharmaceutically acceptable salts” refer to derivatives of the disclosed
compounds wherein the parent compound is modified by making acid or base salts thereof.
The pharmaceutically acceptable salts include the conventional non-toxic salts or the
quaternary ammonium salts of the parent compound formed, for example, from non-toxic
inorganic or organic acids. For example, such conventional non-toxic salts include those
derived from inorganic acids such as hydrochloric, hydrobromic, sulfuric, sulfamic, phosphoric,
nitric and the like, including mono, di or tri-salts thereof; and the salts prepared from organic
acids such as acetic, propionic, succinic, tartaric, citric, methanesulfonic, benzenesulfonic,
glucoronic, glutamic, benzoic, salicylic, toluenesulfonic, oxalic, fumaric, maleic, lactic and the
like. Further addition salts include ammonium salts such as tromethamine, meglumine,
epolamine, etc., metal salts such as sodium, potassium, calcium, zinc or magnesium.
The pharmaceutically acceptable salts of the present invention can be synthesized from
the parent compound which contains a basic or acidic moiety by conventional chemical
methods. Generally, such salts can be prepared by reacting the free acid or base forms of
these compounds with a stoichiometric amount of the appropriate base or acid in water or in
an organic solvent, or in a mixture of the two. Generally, non-aqueous media like ether, ethyl
acetate, ethanol, isopropanol, or acetonitrile are preferred. Lists of suitable salts are found in
Remington’s Pharmaceutical Sciences, 20 ed., Mack Publishing Company, Easton, PA,
2000, the disclosure of which is hereby incorporated by reference.
The term “comprising” as used in this specification means “consisting at least in part of”.
When interpreting each statement in this specification that includes the term “comprising”,
features other than that or those prefaced by the term may also be present. Related terms
such as “comprise” and “comprises” are to be interpreted in the same manner.
The compounds of the general formula (I') having geometrical and stereoisomers
are also a part of the invention. Also described are compounds of the general formula (I)
having geometrical and stereoisomers.
According to a further object, the present invention is also concerned with the
process of preparation of the compounds of formula (I'). Also described is a process of
preparation of the compounds of formula (I).
The compounds and process of the present invention may be prepared in a number of
ways well-known to those skilled in the art. The compounds can be synthesized, for example,
by application or adaptation of the methods described below, or variations thereon as
appreciated by the skilled artisan. The appropriate modifications and substitutions will be
readily apparent and well known or readily obtainable from the scientific literature to those
skilled in the art.
In particular, such methods can be found in R.C. Larock, Comprehensive Organic
Transformations, Wiley-VCH Publishers, 1999.
It will be appreciated that the compounds of the present invention may contain one or
more asymmetrically substituted carbon atoms, and may be isolated in optically active or
racemic forms. Thus, all chiral, diastereomeric, racemic forms, isomeric forms of a structure
are intended, unless the specific stereochemistry or isomeric form is specifically indicated. It is
well-known in the art how to prepare and isolate such optically active forms. For example,
mixtures of stereoisomers may be separated by standard techniques including, but not limited
to, resolution of racemic forms, normal, reverse-phase, and chiral chromatography,
preferential salt formation, recrystallization, and the like, or by chiral synthesis either from
chiral starting materials or by deliberate synthesis of target chiral centers.
Compounds of the present invention may be prepared by a variety of synthetic routes.
The reagents and starting materials are commercially available, or readily synthesized by
well-known techniques by one of ordinary skill in the arts. All substituents, unless otherwise
indicated, are as previously defined.
In the reactions described hereinafter, it may be necessary to protect reactive functional
groups, for example hydroxyl, amino, imino, thio or carboxy groups, where these are desired
in the final product, to avoid their unwanted participation in the reactions. Conventional
protecting groups may be used in accordance with standard practice, for examples see T.W.
Greene and P. G. M. Wuts in Protective Groups in Organic Chemistry, 4th ed.(2007), John
Wiley & Sons Inc., 1999; J. F. W. McOmie in Protective Groups in Organic Chemistry, Plenum
Press, 1973.
Some reactions may be carried out in the presence of a base. There is no particular
restriction on the nature of the base to be used in this reaction, and any base conventionally
used in reactions of this type may equally be used here, provided that it has no adverse effect
on other parts of the molecule. Examples of suitable bases include: sodium hydroxide,
potassium carbonate, triethylamine, alkali metal hydrides, such as sodium hydride and
potassium hydride; alkyllithium compounds, such as methyllithium and butyllithium; and alkali
metal alkoxides, such as sodium methoxide and sodium ethoxide.
Usually, reactions are carried out in a suitable solvent. A variety of solvents may be
used, provided that it has no adverse effect on the reaction or on the reagents involved.
Examples of suitable solvents include: hydrocarbons, which may be aromatic, aliphatic or
cycloaliphatic hydrocarbons, such as hexane, cyclohexane, benzene, toluene and xylene;
amides, such as dimethylformamide; alcohols such as ethanol and methanol and ethers, such
as diethyl ether and tetrahydrofuran.
The reactions can take place over a wide range of temperatures. In general, it is found
convenient to carry out the reaction at a temperature of from 0°C to 150°C (more preferably
from about room temperature to 100°C). The time required for the reaction may also vary
widely, depending on many factors, notably the reaction temperature and the nature of the
reagents. However, provided that the reaction is effected under the preferred conditions
outlined above, a period of from 3 hours to 20 hours will usually suffice.
The compound thus prepared may be recovered from the reaction mixture by
conventional means. For example, the compounds may be recovered by distilling off the
solvent from the reaction mixture or, if necessary, after distilling off the solvent from the
reaction mixture, pouring the residue into water followed by extraction with a water-immiscible
organic solvent and distilling off the solvent from the extract. Additionally, the product can, if
desired, be further purified by various well-known techniques, such as recrystallization,
reprecipitation or the various chromatography techniques, notably column chromatography or
preparative thin layer chromatography.
The process of preparation of a compound of formula (I) of the invention is a further
object of the present invention.
A compound of formula (I) can be obtained by reacting a compound of formula (II)
with a compound of formula (III) in order to form secondary or tertiary amines,
carboxamides, urea, sulfonamides or thioureas,
(R ) 1
N (CR R )
Y(A) L R
(II) (III)
1 3 4 5 6 1 2
wherein R , R , R , R , R , L , L , X, A, q, n et i are defined as above for formula (I), Y is a
leaving group.
The leaving group is such that reactive functions of compounds (II) and (III) lead to the –
NR -(A)i- group as in formula (I).
Preferably, the leaving group Y is chosen from halogen, OH, activated OH such as a
group of R-S(O) O-, wherein R is an aryl or a linear or branched C -C (alkyl). Preferably,
2 1 6
H C S O
H C S O
R-S(O) O- is a Ts- or Ms- group with Ts is and Ms is .
More specifically, when the group consisting of –NR -(A)i- in compounds (I) is :
Secondary or Tertiary amines: Y is a leaving group chosen from halogen, OH,
activated OH such as a group of R-S(O) O-, wherein R is an aryl or a linear or
branched C -C (alkyl). Preferably, R-S(O) O- is a Ts- or Ms- group with Ts is
1 6 2
H C S O
H C S O
and Ms is and i = 0. Generally, these reactions
are alkylations, Mitsunobu reactions and are performed according methods well
known in the art; or
Carboxamides : Y and A form an acid chloride or a carboxylic acid. Generally,
when Y is OH, i is 1 and A is C(O), peptidic coupling reaction conditions are used;
Generally, when Y is OH, i is 1 and A is C(O) this reaction is carried out in the
presence of coupling reagents such as EDCl (1-ethyl[3-
(dimethylamino)propyl]carbodiimide hydrochloride) and HOBt (N-hydroxybenzotriazol),
with or without a base (e.g. Et N) in an aprotic solvent such as dichloromethane or
dimethylformamide;
Ureas : Y and A form an isocyanate; or
Sulfonamides : Y and A form a sulfonyl chloride; or
Thioureas : Y and A form a thioisocyanate.
In a process of the second aspect of the invention, the compound of formula (II) is a
compound of formula (IIa)
8 8'
(CR R )
(R ) 1
L X' NH
N (CR R )
(IIa)
1 1 8 8’ 3 4
wherein R , q, L , X’, R , R , p, R , R and n are as defined for formula (I’) and (Ia’).
A compound of the invention of formula (I') can also be obtained by reacting a
compound of formula (IV) with a compound of formula (V)
(R )
Y 2 6
N (A)
(CR R )
(IV)
1 3 4 5 6 1 2
wherein R , R , R , R , R , L , L , X, q, n et i are defined above and Y is a leaving group.
Preferably, Y is chosen from epoxy, halogen and activated OH as defined above.
In a process of the third aspect of the invention, the compound of formula (V) is a
compound of formula (Va)
8 8'
(CR R )
Y 2 6
N (A)
(CR R )
(Va)
8 8’ 3 4 2 6 1
wherein, X, R , R , p, R , R , n, A, L and R are as defined for formula (I’) and (Ia’), L
and Y are as defined above for formula (V), and is reacted with a compound of formula
(IV) above.
This reaction is generally carried out in presence of a base, preferably an inorganic
base and in a solvent, preferably a polar aprotic solvent.
The compounds of formula (III) and (IV) are commercially available or can be
prepared by the person skilled in the art based on its general knowledge in organic
chemistry.
The compounds of formula (II) and (V) are obtained as described in the general
procedure below.
A compound of formula (I) can also be obtained by reacting a corresponding
compound of formula (Ic)
(R )
L Xa
N (A)
N (CR R )
(Ic)
1 2 3 4 5 6 1 2
Wherein, R , R , R , R , R , R , L , L , q, n and i are as defined for formula (I) and Xa is a
precursor group of X. The compound of formula (Ic) may be obtained from corresponding
compounds of formula (IIc) and (IIIc) or (IVc) and (Vc), respectively, by analogy with
compounds of formula (I) as above.
The term “precursor” is used herein to refer to compounds which differ from the
indicated or desired compounds by the presence and/or absence of groups or functions.
Such groups or functions may be introduced, transformed and/or omitted by common
functionalization reactions, known from the skilled person.
The functionalization reaction may be carried out by application or adaptation of
known methods.
Preferably, the precursor group is such that it enables by one or more step to obtain
X starting from Xa, such as for example by reduction, amidification, oxidation, hydrolysis,
esterification.
The above reactions can be carried out by the skilled person by applying or adapting
the methods illustrated in the examples hereinafter.
Further, the process of the invention may also comprise the additional step of
isolating the compound of formula (I’) or (I’a). Also described are additional steps of
isolating the compounds of formula (I), (Ia) or (Ib). This isolation in both cases can be
done by the skilled person by any of the known conventional means, such as the recovery
methods described above.
Generally, the starting products are commercially available mainly from Aldrich or
Acros or other typical chemicals supplier or may be obtained by applying or adapting any
known methods or those described in the examples.
According to a further object, the present invention concerns also the pharmaceutical
compositions comprising a compound of formula (I’) or (I’a) as defined above with a
pharmaceutically acceptable excipient. More particularly, the invention provides a
pharmaceutical composition comprising a compound of formula (I’)
8 8'
(CR R )
(R ) 1
L X' N A
N (CR R )
(I')
wherein
R , each identical or different, is chosen from the group consisting of halogen, R,
OR, NRR, CN, CF , C(O)R, C(O)OR, C(O)NRR’, NO , (C -C )alkylene-OR, (C -
3 2 1 6 1
C)alkylene-NRR’, (C -C )alkylene-COR, (C -C)alkylene-CONRR’, -O-(C -
6 1 6 2 1 6 1
C )alkylene-COR, -O-(C -C)alkylene-CONRR’, CO -(C -C)alkylene-OR, CO -
6 2 1 6 2 1 6 2
(C -C )alkylene-NRR’, C(O)NH-(C -C )alkylene-OR, CONH-(C -C )alkylene-NRR’,
1 6 1 6 1 6
11 10 11 11
OCF , SO R, SO H, SO NRR’, NHSO R, R C ≡CR , (R )(R )C=C(R ) , (C -
3 2 3 2 2 2 1
C )alkylene-COR, NHCOR, or (C -C )alkyl interrupted by at least one heteroatom;
6 1 6
L is linear or branched (C -C )alkylene optionally substituted by one or more of
=O, CN, C(O)R, C(O)OR, or C(O)NRR’, or linear or branched CH (C -C )alkylene,
2 1 6
wherein the later (C -C )alkylene is optionally substituted by one or more of
halogen, OR, NRR’ or CF ;
q is 0, 1, 2, 3 or 4
X’ is CR ;
R is OR, halogen, linear or branched (C -C )alkyl-OR, C(O)OR, C(O)NRR’, CN,
OR , NRR’ or SR;
n is 0,1 or 2;
p is 1, 2 or 3;
3 4 8’ 8
R , R , R and R , each identical or different, are chosen from the group consisting
of H, linear or branched (C -C )alkyl, halogen, OH, -O-(C -C )alkyl, NRR, CN, CF ,
1 6 1 6 3
OR, C(O)R, C(O)OR or C(O)NRR’;
A is chosen from the group consisting of :
- -C(O)-;
- -C(O)NH-;
- SO -; or
- SO NH-;
L is linear or branched (C -C )alkylene optionally interrupted by at least one
heteroatom chosen from O, NR or S and/or optionally substituted by : R, OR,
NRR’, (C -C )alkyl-OR, (C -C )alkyl-NRR’, OC(O)R, NHC(O)R, NHC(O)NRR’, CN,
1 6 1 6
C(=NH)NHOR
R is chosen from the group consisting in aryl, heteroaryl, cycloalkyl, heterocycle,
H, wherein the aryl, heteroaryl, cycloalkyl or heterocycle is mono or polycyclic and
is optionally substituted by one or more of linear or branched (C -C )alkyl, halogen,
NRR, CN, CF , OR, =O, C(O)R, C(O)OR, NHC(O)R, OC(O)R, linear or branched
(C -C )alkenylene or C(O)NRR’;
each R and R’, identical or different, are independently chosen from H, linear or
branched (C -C )alkyl, cycloalkyl, aryl, aromatic or non aromatic heterocycle, linear
or branched -(C -C )alkyl-aryl or linear or branched -(C -C )alkyl-heterocycle,
1 6 1 6
wherein the heterocycle is aromatic or non aromatic; optionally substituted or not
by OH, CO H, C(O)NH , NH
2 2 2
R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR, -
C(O)CH -NRR’, -C(O)-CH -CH -CO R, -C(O)-CH -SO H, -C(O)-(C H N), -PO H ,
2 2 2 2 2 3 5 4 3 2
or their ionized form;
R independently is chosen from a bond, a linear or branched (C -C )alkyl;
R independently is chosen from an hydrogen atom, a linear or branched (C1-
C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH, NH , C(O)OH or
C(O)NH;
or their pharmaceutically acceptable salts or their optical isomers, racemates,
diastereoisomers, enantiomers or tautomers,
with a pharmaceutically acceptable excipient.
Preferred embodiments of formula (I’) or (I’a) are as defined above in respect of the
compounds of the invention and according to anyone of the preferred features or
embodiment.
According to a still further object, the present invention concerns a compound of
formula (I') of the invention for inhibiting cysteine protease. Compounds of formula (I), (Ia)
and (Ib) are also described for inhibiting cysteine protease.
Advantageously, the compounds of formula (I), (I’), (Ia), (Ib) or (I’a) enables a
selective and reversible inhibition of cysteine protease.
The compounds and the pharmaceutical composition of the invention are useful for
inhibiting cysteine proteases, in particular specific de-ubiquitination enzymes such as
USPs, and more particularly USP-7 in patients in the need thereof.
The compounds and the pharmaceutical composition of the invention are particularly
useful for treating and/or preventing cancer and metastasis, more particularly prostate
and/or colon cancers, neurodegenerative diseases, such as Alzheimer’s disease and
Parkinson’s disease, immunological disorders, bone and joint diseases, osteoporosis,
arthritis inflammatory disorders, cardiovascular diseases, viral infections and diseases,
and/or viral infectivity and/or latency, bacterial infections and diseases.
The compound and pharmaceutical composition of the invention can be used on
patients which do not have beta-amyloïd plaques that act on senile dementia especially,
Alzheimer’s disease.
In particular, said viral infections and diseases are chosen from herpes simplex-1 or
-2 viral infections, hepatitis A, hepatitis C, SARS coronavirus infection and disease,
Epstein-Barr virus, rhinoviral infections and diseases, adenoviral infections and diseases,
poliomyelitis.
According to an aspect, said compounds inhibit one or more viral cysteine
proteases.
Bacterial cysteine proteases may be chosen from streptopain, clostripain,
staphylococcal cysteine protease, gingipain.
The present invention also concerns the combinations comprising a compound of
formula (I') as defined above with one or more active agents chosen from anti-cancer
agents, neurological agents, thrombolytic agents, antioxidant agents, anti-infective, anti-
hypertensive agents, diuretic agents, thrombolytic agents, immunosuppressive agents,
cardiovascular agents, immunomodulatory agents, anti-inflammatory agents, antiviral
agents, and anti-bacterial agents.
Also described are methods of treatment comprising the administration of a
compound of the invention together with a pharmaceutically acceptable carrier or
excipient to a patient in the need thereof.
According to the invention, the terms “patient” or “patient in need thereof”, are
intended for an animal or a human being affected or likely to be affected with a
pathological condition involving an active cysteine protease in its pathogenesis.
Preferably, the patient is human.
The identification of those subjects who are in need of treatment of herein-described
diseases and conditions is well within the ability and knowledge of one skilled in the art. A
veterinarian or a physician skilled in the art can readily identify, by the use of clinical tests,
physical examination, medical/family history or biological and diagnostic tests, those subjects
who are in need of such treatment.
“Therapeutically effective amount” means an amount of a compound/ medicament
according to the present invention effective in preventing or treating a pathological
condition requiring the inhibition of an active cysteine protease involved in its
pathogenesis.
A therapeutically effective amount can be readily determined by the attending
diagnostician, as one skilled in the art, by the use of conventional techniques and by
observing results obtained under analogous circumstances. In determining the therapeutically
effective amount, a number of factors are considered by the attending diagnostician,
including, but not limited to: the species of subject; its size, age, and general health; the
specific disease involved; the degree of involvement or the severity of the disease; the
response of the individual subject; the particular compound administered; the mode of
administration; the bioavailability characteristic of the preparation administered; the dose
regimen selected; the use of concomitant medication; and other relevant circumstances.
The amount of a compound of formula (I), (I’), (Ia), (Ib) or (I’a), which is required to
achieve the desired biological effect, will vary depending upon a number of factors, including
the chemical characteristics (e.g. hydrophobicity) of the compounds employed, the potency of
the compounds, the type of disease, the species to which the patient belongs, the diseased
state of the patient, the route of administration, the bioavailability of the compound by the
chosen route, all factors which dictate the required dose amounts, delivery and regimen to be
administered.
“Pharmaceutically” or “pharmaceutically acceptable” refer to molecular entities and
compositions that do not produce an adverse, allergic or other untoward reaction when
administered to an animal, or a human, as appropriate.
As used herein, “pharmaceutically acceptable excipient” includes any carriers,
diluents, adjuvants, or vehicles, such as preserving or antioxidant agents, fillers,
disintegrating agents, wetting agents, emulsifying agents, suspending agents, solvents,
dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption
delaying agents and the like. The use of such media and agents for pharmaceutical active
substances is well-known in the art. Except insofar as any conventional media or agent is
incompatible with the active ingredient, its use in the therapeutic compositions is
contemplated. Supplementary active ingredients can also be incorporated into the
compositions as suitable therapeutic combinations.
In the context of the invention, the term “treating” or “treatment”, as used herein,
means reversing, alleviating, inhibiting the progress of, or preventing the disorder or
condition to which such term applies, or one or more symptoms of such disorder or
condition.
In general terms, the compounds of this invention may be provided in an aqueous
physiological buffer solution containing 0.1 to 10 % w/v compound for parenteral
administration. Typical dose ranges are from 1 mg/kg to 0.1 g/kg of body weight per day; a
preferred dose range is from 0.01 mg/kg to 100 mg/kg of body weight per day or an
equivalent dose in a human child. The preferred dosage of drug to be administered is likely to
depend on such variables as the type and extent of progression of the disease or disorder, the
overall health status of the particular patient, the relative biological efficacy of the compound
selected, the formulation of the compound, the route of administration (intravenous,
intramuscular, or other), the pharmacokinetic properties of the compound by the chosen
delivery route, and the speed (bolus or continuous infusion) and schedule of administrations
(number of repetitions in a given period of time).
The compounds of the present invention are also capable of being administered in unit
dose forms, wherein the expression “unit dose” means a single dose which is capable of
being administered to a patient, and which can be readily handled and packaged, remaining
as a physically and chemically stable unit dose comprising either the active compound itself,
or as a pharmaceutically acceptable composition, as described hereinafter. As such, typical
total daily dose ranges are from 0.01 to 100 mg/kg of body weight. By way of general
guidance, unit doses for humans range from 1 mg to 3000 mg per day. Preferably, the unit
dose range is from 1 to 500 mg administered one to six times a day, and even more
preferably from 10 mg to 500 mg, once a day. Compounds provided herein can be formulated
into pharmaceutical compositions by admixture with one or more pharmaceutically acceptable
excipients. Such unit dose compositions may be prepared for use by oral administration,
particularly in the form of tablets, simple capsules or soft gel capsules; or intranasally,
particularly in the form of powders, nasal drops, or aerosols; or dermally, for example, topically
in ointments, creams, lotions, gels or sprays, or via trans-dermal patches.
The compositions may conveniently be administered in unit dosage form and may be
prepared by any of the methods well-known in the pharmaceutical art, for example, as
described in Remington: The Science and Practice of Pharmacy, 20 ed.; Gennaro, A. R.,
Ed.; Lippincott Williams & Wilkins: Philadelphia, PA, 2000.
Preferred formulations include pharmaceutical compositions in which a compound of the
present invention is formulated for oral or parenteral administration.
For oral administration, tablets, pills, powders, capsules, troches and the like can
contain one or more of any of the following ingredients, or compounds of a similar nature: a
binder such as microcrystalline cellulose, or gum tragacanth; a diluent such as starch or
lactose; a disintegrant such as starch and cellulose derivatives; a lubricant such as
magnesium stearate; a glidant such as colloidal silicon dioxide; a sweetening agent such as
sucrose or saccharin; or a flavoring agent such as peppermint, or methyl salicylate. Capsules
can be in the form of a hard capsule or soft capsule, which are generally made from gelatin
blends optionally blended with plasticizers, as well as a starch capsule. In addition, dosage
unit forms can contain various other materials that modify the physical form of the dosage
unit, for example, coatings of sugar, shellac, or enteric agents. Other oral dosage forms syrup
or elixir may contain sweetening agents, preservatives, dyes, colorings, and flavorings. In
addition, the active compounds may be incorporated into fast dissolved, modified-release or
sustained-release preparations and formulations, and wherein such sustained-release
formulations are preferably bi-modal. Preferred tablets contain lactose, cornstarch,
magnesium silicate, croscarmellose sodium, povidone, magnesium stearate, or talc in any
combination.
Liquid preparations for parenteral administration include sterile aqueous or non-aqueous
solutions, suspensions, and emulsions. The liquid compositions may also include binders,
buffers, preservatives, chelating agents, sweetening, flavoring and coloring agents, and the
like. Non-aqueous solvents include alcohols, propylene glycol, polyethylene glycol, vegetable
oils such as olive oil, and organic esters such as ethyl oleate. Aqueous carriers include
mixtures of alcohols and water, buffered media, and saline. In particular, biocompatible,
biodegradable lactide polymer, lactide/glycolide copolymer, or polyoxyethylene-
polyoxypropylene copolymers may be useful excipients to control the release of the active
compounds. Intravenous vehicles can include fluid and nutrient replenishers, electrolyte
replenishers, such as those based on Ringer's dextrose, and the like. Other potentially useful
parenteral delivery systems for these active compounds include ethylene-vinyl acetate
copolymer particles, osmotic pumps, implantable infusion systems, and liposomes.
Alternative modes of administration include formulations for inhalation, which include
such means as dry powder, aerosol, or drops. They may be aqueous solutions containing, for
example, polyoxyethylenelauryl ether, glycocholate and deoxycholate, or oily solutions for
administration in the form of nasal drops, or as a gel to be applied intranasally. Formulations
for buccal administration include, for example, lozenges or pastilles and may also include a
flavored base, such as sucrose or acacia, and other excipients such as glycocholate.
Formulations suitable for rectal administration are preferably presented as unit-dose
suppositories, with a solid based carrier, and may include a salicylate. Formulations for topical
application to the skin preferably take the form of an ointment, cream, lotion, paste, gel, spray,
aerosol, or oil. Carriers which can be used include petroleum jelly, lanolin, polyethylene
glycols, alcohols, or their combinations. Formulations suitable for transdermal administration
can be presented as discrete patches and can be lipophilic emulsions or buffered, aqueous
solutions, dissolved and/or dispersed in a polymer or an adhesive.
The invention is further illustrated but not restricted by the description in the following
examples and figures as a non limiting illustration for selective inhibition of USP7
deubiquitinating activity over a panel of active DUBs in physiological conditions.
Fig. 1 shows a competitive HAUbVS gel for example 2 and example 5 (12.550-
100-200 µM) using the HEK293 proteome.
Fig. 2 shows competitive HAUbVS gels comparing the activity of example 2 and
example 5 against USP7 and additional deubiquitinating enzymes (USP8, USP5, USP10,
CYLD, UCH-L3) using the HEK293 proteome.
Fig. 3 shows time-dependent experiments with USP7 and example 2.
Fig. 4 shows reversibility results obtained following gel filtration experiments with
USP7 in the presence of example 2 and example 3.
Fig. 5 shows reversibility results obtained following rapid and large dilution of USP7
in the presence of example 2 and example 3.
Fig. 6 represents characterization of complexes involving USP7 and examples 1 and
2 as evaluated by ESI-MS in native conditions.
EXPERIMENTAL
Representative compounds of the invention, and compounds described are
summarized in the table below:
Formula Example
N HO
Cl N
Representative compounds of the invention, and compounds described can be
synthesized according to the following procedures.
General analytical procedures
1 13
NMR spectra were recorded at 300 or 400 MHz for H and at 75 or 100, MHz for C
on a Bruker or Varian spectrometer with CDCl or DMSO-d (dimethyl sulfoxide) as
solvent. The chemical shifts are given in ppm, referenced to the internal TMS
(Trimethylsilyl) or deuterated solvent signal.
LC-MS analysis was used to analyze and purify target compounds. LC-MS analyses
were performed using an Waters Micromass, Bruker Esquire 3000 (ESI-IT) or Agilent
Iontrap XCT-Plus mass spectrometers and Waters Alliance 2790 or Agilent 1100 Series
LC systems with UV and/or DAD detection. Columns: Waters XTerra MS C18, 30 x 2.1
mm (3.5 µm), Atlantis T3 C18, 3 μm, 50 mm × 2.1 mm or Inertsil C8, 250mm, 4.6mm,
5 μm. Flow rates: 0.8-1.2 ml/min, Gradients: a) water 10% MeOH (methanol), ammonium
formate 10 mM, to 100% MeOH or b) 95% Water-acetonitrile, 0.1% HCOOH to 95%
acetonitrile.). UV detection: 190 to 400 nm. All compounds were >95% pure.
Representative procedure 1:
Preparation of examples 1-14
O N PG N PG N PG
O NH
O (b')
(R )
(IV)
(R )
q (R )
N PG
(II)
(R )
Reaction scheme 1
Compounds of formula (c) are obtained either from compound (b) via a Corey-
Chaycovsky reaction as described in J. Amer. Chem. Soc. 1965, 87, 1353-1364 and
WO2005054249 or either by epoxidation of the double bond of derivatives (b’). Compound
(b) are commercially available or obtained from compound (a) after protection reactions
well known in the art. The protecting group (PG) is for example benzyl (Bn), benzoyl (Bz),
ter-butyloxycarbonyl (BOC) or Carbobenzyloxy (Cbz).
Oxirane (c) ring opening with quinazolinone (IV) is performed in the presence of a base
like NaH, KF, K CO , Cs CO when heating between 50 and 100°C in dimethylformamide,
2 3 2 3
acetone, etc...
Deprotection of the piperidine nitrogen is performed according to known methods gives
compound (II).
Peptide coupling reaction are performed according to well known methods in the art
between compound (II) and acid derivatives HO-C(O)-CH2(Z1)-CH2-D (compound III). For
some examples conditions like EDCl (1-ethyl[3-(dimethylamino)propyl]carbodiimide
hydrochloride), HOBt (N-hydroxybenzotriazol) and Et N in Dichloromethane (CHCl ) were
preferred. Amide bond formation is also possible when reacting with the acid chloride
derivative.
Compounds (IV) are commercially available or prepared according to literature
procedures
The following compounds are obtained by the implementation of representative procedure
1:
- q is 0, n is 1, Z1 is H and D1 is phenyl (example 1, described in the experimental
part)
- q is 1, n is 1, R1 is Cl, Z1 is H and D1 is phenyl (example 2)
- q is 0, n is 1, Z1 is H and D1 is cyclopentyl (example 3)
- q is 1, n is 1, R1 is Cl, Z1 is H and D1 is cyclopentyl (example 4)
- q is 0, n is 1, Z1 is CH3 and D1 is thiophenyl (example 5)
- q is 0, n is 1, Z1 is CH3 and D1 is H (example 6)
- q is 2, R1 is OMe, n is 1, Z1 is CH3 and D1 is H (example 7)
- q is 1, R1 is Cl, n is 1, Z1 is CH2CH3 and D1 is CH3 (example 9)
- q is 0, n is 1, Z1 is H, D1 is 2-Ome-phenyl (example 10)
- q is 1, R1 is Cl, n is 1, Z1 is CH3, D1 is thiophenyl (example 11)
- q is 0, n is 1, Z1 is H, D1 is thiophenyl (example 12)
- q is 0, n is 1, Z1 is CH3, D1 is phenyl (example 13)
- q is 1, R1 is Cl, n is 1, Z1 is CH3 and D1 is phenyl (example 14)
Selected data of some of the compounds that were prepared by application or
adaptation of the method disclosed above are shown below:
EXPERIMENTAL
Example 1 : 3-{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-
dihydroquinazolinone
Step 1: Preparation of tert-butyl 1-oxaazaspiro[2.5]octanecarboxylate
To a stirred solution of 1-Bocpiperidone (6.1g, 30.6mmol, 1eq) in tetrahydrofuran
(200mL) was added trimethylsulfoxonium iodide (6.8g, 30.6mmol, 1eq) and potassium
tert-butoxide (4.0g, 30.6mmol, 1eq). The mixture was refluxed for 18h and concentrated in
vacuo. The crude product was dissolved in AcOEt (100mL), and washed with water
(100mL). The layers were separated, and the aqueous layer was extracted with AcOEt.
The combined organic extracts were dried over Na SO , filtered and concentrated in
vacuo. The solid was purified by flash column chromatography on silica gel (eluent:
cyclohexane/ethyl acetate 9/1) to give compound tert-butyl 1-oxaazaspiro[2.5]octane
carboxylate (3.3g, 52%) as a white solid.
Step 2: Preparation of tert-butyl 4-hydroxy[(4-oxo-3,4-dihydroquinazolin
yl)methyl]piperidinecarboxylate
To a solution of 4-hydroxyquinazoline (1.65g, 11.3mmol, 1.1eq) in DMF (20mL) was
added compound from step 1 (2.35g, 1eq) and cesium carbonate (10.34g, 3eq). The
mixture was heated at 80°C overnight. The mixture was washed with a saturated solution
of NH Cl, the aqueous layer was extracted with AcOEt. The organic extract was dried over
Na2SO4, filtered and concentrated in vacuo. The crude product was purified by flash
chromatography on silica gel (eluent: cyclohexane/ethyl acetate 3/7) to give tert-butyl 4-
hydroxy[(4-oxo-3,4-dihydroquinazolinyl)methyl]piperidinecarboxylate (1.6g, 40%)
as a colourless oil.
MS (ES+, m/z): 360.2 [M+H]+, 719.6 [2M+H]+
Step 3: Preparation of Trifluoroacetate salt of 3-[(4-hydroxypiperidinyl)methyl]-3,4-
dihydroquinazolinone
Compound from step 2 (1.0g, 2.8mmol) was dissolved in TFA (trifluoroacetic acid) (80mL)
and the reaction mixture was stirred at room temperature overnight. The resulting mixture
was concentrated in vacuo. The crude Trifluoroacetate salt of 3-[(4-hydroxypiperidin
yl)methyl]-3,4-dihydroquinazolinone was used in the next step without purification.
MS (ES+, m/z): 260.1 [M+H]+
1H NMR (DMSO-d6) d: 8.53 (broad m, 1H), 8.25 (s, 1H), 8.27 (broad m, 1H), 8.17 (dd,
1H), 7.85 (dd, 1H), 7.70 (dd , 1H), 7.57 (dd , 1H), 4.07 (s, 2H), 3.18 (m, 2H), 3.02 (m,
2H), 1.60 (m, 2H), 1.50 (m, 2H)
Step 4: 3-{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolin
To a solution of the TFA salt from step 3 (0.8mmol, 1eq) in CH Cl (10mL) was added
successively DIEA (N,N diisopropylethylamine) (0.4mL, 2.4 mmol, 3eq), hydrocinnamic
acid (150mg, 0.96mmol, 1.2eq), EDCI (306mg, 1.6mmol, 2eq) and HOBt (216mg,
1.6mmol, 2eq). The reaction mixture was stirred at room temperature overnight and then
concentrated in vacuo. The crude product was purified by flash column chromatography
on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to 0/10 then ethyl acetate/MeOH
9/1) to give Example 1 (256mg, 82%) as a white solid.
MS (ES+, m/z): 392.2 [M+H]+
1H NMR (DMSO-d6) d: 8.25 (s, 1H), 8.17 (dd , 1H), 7.84 (dd , 1H), 7.69 (dd, 1H), 7.55
(dd, 1H), 7.21 (m, 5H), 4.96 (s, 1H), 4.04 (m, 3H), 3.64 (m, 1H), 3.21 (m, 1H), 2.93
(m, 1H), 2.80 (m, 2H), 2.62 (m, 2H), 1.41 (m, 4H)
Example 5 : 3-({4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidinyl}methyl)-
3,4-dihydroquinazolinone
To a solution of the TFA salt from step 3 of example 1 (0.42mmol, 1eq) in CH Cl (10mL)
was added successively DIEA (0.37mL, 2.12 mmol, 5eq), 2-Methyl(2-thienyl)propanoic
acid (71mg, 0.42mmol, 1eq, Organometallics,2002, 21, 2842), EDCI (161mg, 0.84mmol,
2eq) and HOBt (114mg, 0.84mmol, 2eq). The reaction mixture was stirred at room
temperature overnight and then concentrated in vacuo. The crude product was purified by
flash column chromatography on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to
0/10 then ethyl acetate/MeOH 9/1). A second purification by column chromatography was
performed using the same conditions to give, after solvent evaporation and drying under
high vacuum Example 5 (117mg, 68%) as a white solid.
MS (ES+, m/z): 412.2 [M+H]+
1H NMR (DMSO-d6) d: 8.24 (s, 1H), 8.17 (m , 1H), 7.84 (m , 1H), 7.70 (m, 1H), 7.56 (m,
1H), 7.27 (m, 1H), 6.88 (m, 1H), 6.82 (s, 1H), 4.96 (s, 1H), 4.06 (m, 1H), 3.90 (m, 2H),
3.68 (m, 1H), 3.20 (m, 5H), 1.34 (m, 4H), 1.02 (m, 3H).
Example 11 : 7-chloro({4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidin
yl}methyl)-3,4-dihydroquinazolinone
Step 1: Preparation of tert-butyl 4-[(7-chlorooxo-3,4-dihydroquinazolinyl)methyl]
hydroxypiperidinecarboxylate
To a solution of 7-chloro-3,4-dihydroquinazolinone (0.40g, 2.2mmol, 1eq) in DMF (5mL)
was added compound from step 1 of example 1 (0.47g, 1eq) and cesium carbonate
(2.17g, 3eq). The reaction mixture was heated at 80°C overnight, and then allowed to
reach room temperature. The mixture was washed with a saturated NH4Cl solution, and
then extracted with AcOEt. The combined organic extracts were dried over Na SO ,
filtered and concentrated in vacuo. The crude product was purified by flash
chromatography on silica gel (eluent: cyclohexane/ethyl acetate 3/7). A second
purification by flash chromatography on silica gel was performed (eluent:
cyclohexane/ethyl acetate 6/4 to 0/10) to give tert-butyl 4-[(7-chlorooxo-3,4-
dihydroquinazolinyl)methyl]hydroxypiperidinecarboxylate (0.6g, 68%) as a
colourless oil.
Step 2: Preparation of Trifluoroacetate salt of 7-chloro[(4-hydroxypiperidinyl)methyl]-
3,4-dihydroquinazolinone
Compound from above step 1 (0.6g, 1.5mmol) was dissolved in TFA (5mL) and the
reaction mixture was stirred at room temperature overnight. The resulting mixture was
concentrated in vacuo. The crude Trifluoroacetate salt of 7-chloro[(4-hydroxypiperidin-
4-yl)methyl]-3,4-dihydroquinazolinone was used in the next step without purification.
Step 3: 7-chloro({4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidin
yl}methyl)-3,4-dihydroquinazolinone
To a solution of the TFA salt from above step 2 (0.51mmol, 1eq) in CH Cl (18mL) was
added successively DIEA (0.45mL, 2.5 mmol, 5eq), 2-Methyl(2-thienyl)propanoic acid
(86mg, 0.51mmol, 1eq, Organometallics,2002, 21, 2842), EDCI (196mg, 1.02mmol, 2eq)
and HOBt (138mg, 1.02mmol, 2eq). The reaction mixture was stirred at room temperature
overnight and then concentrated in vacuo. The crude product was purified by flash column
chromatography on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to 0/10 then
ethyl acetate/MeOH 9/1). A second purification by flash column chromatography on silica
gel was performed to remove residual reagents. The product was solubilized in EtOH/H O
1/1 and the solution freeze-dried to give Example 11 (85mg, 40% over two steps) as a
white meringe.
MS (ES+, m/z): 446.2 [M+H]+
1H NMR (DMSO-d6) d: 8.27 (m, 1H), 8.17 (m, 1H), 7.77 (m , 1H), 7.59 (m, 1H), 7.25 (m,
1H), 6.90 (m, 1H), 6.82 (m, 1H), 4.96 (s, 1H), 4.09 (m, 3H), 3.68 (m, 1H), 3.20 (m, 5H),
1.50 (m, 4H), 1.03 (m, 3H)
Example 12 : 3-({4-hydroxy[3-(thiophenyl)propanoyl]piperidinyl}methyl)-3,4-
dihydroquinazolinone
To a solution of the TFA salt from step 3 of example 1 (0.42mmol, 1eq) in CH Cl (10mL)
was added successively DIEA (0.37mL, 2.1 mmol, 5eq), 3-(Thiophenyl)propanoic acid
(80mg, 0.51mmol, 1.2eq), EDCI (161mg, 0.84mmol, 2eq) and HOBt (114mg, 0.84mmol,
2eq). The reaction mixture was stirred at room temperature during 4 days and then
concentrated in vacuo. The crude product was purified by flash column chromatography
on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to 0/10 then ethyl acetate/MeOH
9/1). The product was solubilized in EtOH/H O and the solution freeze-dried to give,
Example 12 (125mg, 75%) as a white meringe.
MS (ES+, m/z): 398.2 [M+H]+
1H NMR (DMSO-d6) d: 8.24 (s, 1H), 8.16 (dd , J= 8Hz, 1H), 7.84 (dd, J=8Hz, J=8Hz, 1H),
7.68 (d, J=8Hz, 1H), 7.55 (dd, J=8Hz, J=8Hz, 1H), 7.27 (m, 1H), 6.90 (m, 3H), 4.98 (s,
1H), 4.09 (m, 1H), 3.99 (m, 2H), 3.64 (m, 1H), 3.23 (m, 1H), 3.00 (m, 2H), 2.92 (m, 1H),
2.66 (m, 2H), 1.45 (m, 4H).
Example 13 : 3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquina
zolinone
To a solution of the TFA salt from step 3 of example 1 (2.37mmol, 1eq) in CH Cl (30mL)
was added successively DIEA (1.24mL, 7.11 mmol, 7eq), 2-methylphenylpropanoic
acid (466mg, 2.84mmol, 1.2eq), EDCI (909mg, 4.74mmol, 2eq) and HOBt (640mg,
4.74mmol, 2eq). The reaction mixture was stirred at room temperature overnight and then
concentrated in vacuo. The crude product was purified by flash column chromatography
on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to 0/10 then ethyl acetate/MeOH
9/1) to give Example 13 (640mg, 66% over two steps) as a white solid.
MS (ES+, m/z): 406.3 [M+H]+
1H NMR (DMSO-d6) d: 8.20 (m, 2H), 7.84 (m , 1H), 7.68 (m, 1H), 7.56 (m, 1H), 7.20 (m,
5H), 4.90 (m, 1H), 3.85 (m, 4H), 3.11 (m, 2H), 2.82 (m, 2H), 2.52 (m, 1H), 1.48 (m, 4H),
1.00 (m, 3H).
Example 14 : 3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}chloro-3,4-
dihydroquinazolinone
To a solution of the TFA salt from step 2 of example 11 (0.34mmol, 1eq) in CH Cl (10mL)
was added successively DIEA (0.18mL, 1.02 mmol, 3eq), 2-methylphenylpropanoic
acid (67mg, 0.41mmol, 1.2eq), EDCI (130mg, 0.68mmol, 2eq) and HOBt (104mg,
0.68mmol, 2eq). The reaction mixture was stirred at room temperature overnight and then
concentrated in vacuo. The crude product was purified by flash column chromatography
on silica gel (eluent: cyclohexane/ethyl acetate from 2/8 to 0/10 then ethyl acetate/MeOH
9/1) to give Example 14 (56mg, 37% over two steps) as a white solid.
MS (ES+, m/z): 440.3 [M+H]+
1H NMR (DMSO-d6) d: 8.29 (d, J=8Hz, 1H), 7.20 (t, J=8Hz, 1H), 7.79 (broad s, 1H), 7.64-
7.61 (m, 1H), 7.32-7.26 (m, 2H), 7.22-7.16 (m, 3H), 4.94 (d, J=6Hz, 1H), 4.15-3.79 (m,
3H), 3.68 (t, J=14Hz, 1H), 3.24-3.09 (m, 2H), 2.89-2.82 (m, 2H), 1.59-1.21 (m, 4H), 1.03
(d, J=6Hz, 3H), 0.78-0.75 (m, 1H)
Representative cysteine proteases
USP7 Protein production & purification
The cDNA encoding USP7 was obtained by PCR amplification from placenta
mRNA. USP7 cDNA was subcloned by PCR into a baculovirus expression vector
(pFastBac-HT; Invitrogen). Full-length wild-type human USP7 and its catalytic mutant
(cysteine 223 replaced by alanine, C223A) were produced as N-terminally His-tagged
fusions in Spodoptera frugiperda cells (Sf9, Invitrogen), using the Bac-to-Bac Baculovirus
system from Invitrogen according to the manufacturer’s instructions. pFastBac-HT-B-
USP7 was used to transform DH10bac cells (Invitrogen), and blue/white selection was
carried out on X-gal/IPTG agar plates. Bacmid DNA was prepared by an alkaline lysis
procedure. The integrity of the bacmid minipreps and their orientation were checked by
PCR, using generic and specific primers. Sf9 insect cells were cultured in InsectXpress
medium (Cambrex) at 27°C and transfected with the corresponding bacmid, using
GeneShuttle 40 (Q-BIOgen). Viruses were recovered in the supernatant 72 h after
transfection. Viruses were amplified by infecting insect cells (Sf9 or High Five cells;
invitrogen) in 50 ml InsectXpress medium in a 150 cm cell culture flask with 500 µl of the
supernatant from transfected Sf9 cells. Following the second round of amplification,
infected cells were recovered by rapid SDS lysis, boiled for 5 min at 100°C, sonicated
briefly and centrifuged for 20 min at 14,000 g. Expression levels in infected Sf9 cells were
compared with those in uninfected cells. Fusion proteins were then allowed to bind to
TALON beads (BD Biosciences, TALON metal affinity resin) for 30 min at 4°C with gentle
rocking. Beads were extensively washed (50 mM sodium phosphate buffer pH 7.0,
500 mM NaCl, 10 mM Imidazole, 0.5% Triton X-100 and 10% glycerol) and bound
proteins were eluted in wash buffer supplemented with 250 mM Imidazole (Sigma). Eluted
fractions were resolved on 4-12% NuPAGE gels (Novex, Invitrogen). Fractions containing
high concentrations of purified proteins (purity > 95%) were dialyzed (20 mM Tris HCl pH
7.6, 200 mM NaCl, 1 mM DTT, 1 mM EDTA and 10% glycerol) were aliquoted and snap
frozen in liquid nitrogen before storage at -80°C.
USP7 activity assay
USP7 was diluted in USP buffer (50 mM Tris HCl; 0.5 mM EDTA
(Ethylenediaminetetraacetic acid); 5 mM DTT; 0.01 % Triton X-100; Bovine Serum
Albumin 0.05 mg.ml pH7.6). Compounds stocks (10 mM) were stored at -20°C in DMSO.
Compounds were tested at different concentrations: from 200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volumes
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for USP7
was 300 nM Ub-AMC (Chem. Biol., 2003, 10, p. 837-846) (Boston Biochem). The
concentrations of the enzyme (USP7) in specificity assays was 100 pM. The
concentrations were determined in order to perform specificity assays under initial
velocities at fixed substrate concentration. Compounds were pre-incubated with enzymes
for 30 minutes at 25°C. Reactions were initiated by addition of substrate to the plates
containing the enzymes (+/- compounds) diluted in assay buffer. Reactions were
incubated for 60 minutes at 37°C. Reactions were stopped by adding acetic acid (100 mM
final). Readings were performed on a Pherastar Fluorescent Reader (BMG). l
Emission 380 nm; l Excitation = 460 nm. Data (mean values +/- standard deviation)
were analyzed as % of control (no compound) and plotted as percentage versus the Log
of the compound concentration using GraphPad (Prism). Data were fitted to a sigmoidal
model (variable slope).
USP5 activity assay
USP5 was diluted in USP buffer (50 mM Tris HCl; 0.5 mM EDTA; 5 mM DTT; 0.01%
Triton X-100; Bovine Serum Albumin 0.05 mg.ml pH 7.6). Compounds stocks (100 mM)
were stored at -20°C in DMSO. Compounds were tested at different concentrations: from
200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volume
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for USP5
was 300 nM Ub-AMC (Boston Biochem). The concentrations of the enzyme (USP5) in
specificity assays was 300 pM. The concentrations were determined in order to perform
specificity assays under initial velocities at fixed substrate concentration. Compounds
were pre-incubated with enzymes for 30 minutes at 25°C. Reactions were initiated by
addition of substrate to the plates containing the enzymes (+/- compounds) diluted in
assay buffer. Reactions were incubated for 60 minutes at 37°C. Reactions were stopped
by adding acetic acid (100 mM final). Readings were performed on a Pherastar
Fluorescent Reader (BMG). l Emission 380 nm; l Excitation = 460 nm. Data (mean
values +/- standard deviation) were analyzed as % of control (no compound) and plotted
as percentage versus the Log of the compound concentration using GraphPad (Prism).
Data were fitted to a sigmoidal model (variable slope).
Cloning & purification of USP8
The cDNA encoding USP8 was obtained by PCR amplification from placenta mRNA.
USP8 cDNA was subcloned by PCR into a baculovirus expression vector (pFastBac-HT;
Invitrogen). A cDNA encoding a mutated USP8 was generated by mutagenic PCR. The
corresponding protein encodes a cysteine to alanine substitution at residue 786. The
sequences were ascertained by sequencing of the entire open reading frame. Bacmids
encoding USP8 were generated following DH10bac transposition. The corresponding
bacmids were transfected into insect cells (Sf9). Viruses were recovered from culture
supernatant and amplified twice. Insect cells (Sf9 or High Five; Invitrogen) were infected
for 72 hours. Total cell lysates were harvested and lyzed in lysis buffer (Tris HCl 50 mM
pH7.6; 0.75 % NP40; 500 mM NaCl; 10 % glycerol; 1 mM DTT; 10 mM imidazole;
-1 -1
Protease Inhibitor Cocktail; AEBSF 20 µg.ml ; Aprotinin 10 µg.ml ). Proteins were affinity
purified on metal affinity resins (Talon Metal affinity resin; BD Biosciences). Bound
materials were extensively washed in wash buffer (50 mM Sodium Phosphate pH 7.0; 300
mM NaCl; 10 mM imidazole; 0.5% Triton X-100; 10% glycerol) and eluted from the resin in
250 mM imidazole-containing wash buffer. Proteins were dialyzed in dialysis buffer (Tris
HCl pH 7.6 20 mM; NaCl 200 mM; DTT 1 mM; EDTA 1 mM; 10% Glycerol). Proteins
purifications were analyzed on 4-12% NuPAGE (Invitrogen).
USP8 activity assay
USP8 was diluted in USP buffer (50 mM Tris HCl; 0.5 mM EDTA; 5 mM DTT; 0.01%
Triton X-100; Bovine Serum Albumin 0.05 mg.ml pH8.8). Compounds stocks (100 mM)
were stored at -20°C in DMSO. Compounds were tested at different concentrations: from
200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volume
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for USP8
was 300 nM Ub-AMC (Boston Biochem). The concentration of the enzyme (USP8) in
specificity assays was 1.36 nM. The concentrations were determined in order to perform
specificity assays under initial velocities at fixed substrate concentration. Compounds
were pre-incubated with enzymes for 30 minutes at 25°C. Reactions were initiated by
addition of substrate to the plates containing the enzymes (+/- compounds) diluted in
assay buffer. Reactions were incubated for 60 minutes at 37°C. Reactions were stopped
by adding acetic acid (100 mM final). Readings were performed on a Pherastar
Fluorescent Reader (BMG). l Emission 380 nm : l Excitation = 460 nm. Data (mean
values +/- standard deviation) were analyzed as % of control (no compound) and plotted
as percentage versus the Log of the compound concentration using GraphPad (Prism).
Data were fitted to a sigmoidal model (variable slope).
UCH-L1 activity assay
UCH-L1 was diluted in USP buffer (50 mM Tris HCl; 0.5 mM EDTA; 5 mM DTT
(Dithiothreitol); 0.01% Triton X-100; Bovine Serum Albumin 0.05 mg.ml pH7.6).
Compounds stocks (100 mM) were stored at -20°C in DMSO. Compounds were tested at
different concentrations: from 200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volume
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for UCH-L1
was 300 nM Ub-AMC (Boston Biochem). The concentration of the enzyme (UCH-L1) in
specificity assays was 2.5 nM. The concentrations were determined in order to perform
specificity assays under initial velocities at fixed substrate concentration. Compounds
were pre-incubated with enzymes for 30 minutes at 25°C. Reactions were initiated by
addition of substrate to the plates containing the enzymes (+/- compounds) diluted in
assay buffer. Reactions were incubated for 60 minutes at 37°C. Reactions were stopped
by adding acetic acid (100 mM final). Readings were performed on a Pherastar
Fluorescent Reader (BMG). l Emission 380 nm; l Excitation = 460 nm. Data (mean
values +/- standard deviation) were analyzed as % of control (no compound) and plotted
as percentage versus the Log of the compound concentration using GraphPad (Prism).
Data were fitted to a sigmoidal model (variable slope).
UCH-L3 activity assay
UCH-L3 was diluted in USP buffer (50 mM Tris HCl; 0.5 mM EDTA; 5 mM DTT;
0.01% Triton X-100; Bovine Serum Albumin 0.05 mg.ml pH7.6). Compounds stocks
(100 mM) were stored at -20°C in DMSO. Compounds were tested at different
concentrations: from 200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volume
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for UCH-L3
was 300 nM Ub-AMC (Boston Biochem). The concentration of the enzyme (UCH-L3) in
specificity assays was 13 pM. The concentrations were determined in order to perform
specificity assays under initial velocities at fixed substrate concentration. Compounds
were pre-incubated with enzymes for 30 minutes at 25°C. Reactions were initiated by
addition of substrate to the plates containing the enzymes (+/- compounds) diluted in
assay buffer. Reactions were incubated for 60 minutes at 37°C. Reactions were stopped
by adding acetic acid (100 mM final). Readings were performed on a Pherastar
Fluorescent Reader (BMG). l Emission 380 nm; l Excitation = 460 nm. Data (mean
values +/- standard deviation) were analyzed as % of control (no compound) and plotted
as percentage versus the Log of the compound concentration using GraphPad (Prism).
Data were fitted to a sigmoidal model (variable slope).
Caspase 3 activity assay
Caspase 3 was diluted in Caspase 3 buffer (100 mM Hepes pH 7.5; 10% sucrose;
0.1% CHAPS). Compounds stocks (100 mM) were stored at -20°C in DMSO. Compounds
were tested at different concentrations: from 200 µM to 91 nM.
Reactions were performed as duplicates in Black 384 well plates (small volume
microplates; Greiner; 10 µl final reaction volume). The substrate concentration for caspase
3 specificity assay was 250 nM (Ac-DEVD-AMC; Promega). The concentration of the
enzyme (Caspase 3) in specificity assays was 1.6 nM. The concentrations were
determined in order to perform specificity assays under initial velocities at fixed substrate
concentration. Compounds were pre-incubated with enzymes for 30 minutes at 25°C.
Reactions were initiated by addition of substrate to the plates containing the enzymes (+/-
compounds) diluted in assay buffer. Reactions were incubated for 60 minutes at 37°C.
Reactions were stopped by adding acetic acid (100 mM final). Readings were performed
on a Pherastar Fluorescent Reader (BMG). l Emission 380 nm; l Excitation = 460 nm.
Data (mean values +/- standard deviation) were analyzed as % of control (no compound)
and plotted as percentage versus the Log of the compound concentration using GraphPad
(Prism). Data were fitted to a sigmoidal model (variable slope).
Cell viability and proliferation methods
HCT116 cell viability and proliferation assay
HCT116 colon cancer cells were obtained from ATCC (American Type Culture
Collection), and maintained in Mc Coy’s 5A medium containing 10% FBS, 3 mM glutamine
and 1% penicillin/streptomycin. Cells were incubated at 37°C in a humidified atmosphere
containing 5% CO .
Cell viability was assayed using the MTS technique in 96-well culture plates
(CellTiter 96 Aqueous Non-Radioactive Cell Proliferation Assay, Promega) according to
the manufacturer’s instructions. MTS (3-(4,5-dimethyl-thiazolyl)(3-carboxy-
methoxyphenyl)(4-sulfophenyl)-2H-tetra-zolium) is a MTT-derived tetrazolium that is
reduced in metabolically active cells into a soluble, cell-permeant formazan. The amount
of formazan, detected by its absorbance at 492 nm is proportional to the number of living,
metabolically active cells.
HCT116 cells were seeded per well. 24 hours later, the medium was changed
and the cells treated in triplicate with the concentrations of each compound from 100µM to
50 nM. The compounds were diluted in 100% DMSO, whose final concentration on cells
was kept at 0.5%.
Cells were incubated with the compounds for 72 hours, and their viability then
assayed by the addition of MTS for 2 hours. Absorbance at 492 nm was measured directly
from the 96-well culture plates. GI50 (Growth Inhibition 50) concentrations for each
compound were calculated using a sigmoidal variable slope fit (Prism 4.0, Graphpad
Softwares). Values represent mean of three independent experiments.
Methods for evaluation of compound selectivity from a panel of deubiquitinating enzymes
active in cell lysates
The C-terminally modified vinyl sulfone derivative of ubiquitin, UbVS, was clearly
helpful for a direct visualization of active DUBs in cells. This tool, which binds covalently to
the cysteine active site of deubiquitinating enzymes, was successfully applied to discover
and characterize novel ubiquitin/ubiquitin-like proteases and to profile active
deubiquitinating enzymes in normal, virus-infected, and malignant cells (Borodovsky et al.,
Chem Biol 2002, 9, 1149-1159, Hemelaar et al., Mol Cell Biol 2004, 24, 84-95, Ovaa et
al., Proc Natl Acad Sci U S A 2004 101, 2253-2258).
The HA-Ub-VS probe (Hemagglutin tag-Ubiquitin-Vinyl Sulfone) was used in this
study to directly visualize the activity of all deubiquitinating enzymes from native
proteomes. This tool was used to evaluate the activity/specificity of our small molecule
compounds on USP7 relative to all deubiquitinating enzymes active in physiological
conditions.
HEK293 cells were harvested and lysed on ice with a non denaturating buffer
containing Tris pH7.4, 50 mM; NaCl, 150 mM; MgCl , 5 mM; EDTA, 0.5 mM; DTT, 2 mM;
ATP (adénosine triphosphate), 2 mM; NP40 (nonyl phenoxypolyethoxylethanol), 0.5%
and glycerol, 10%. Samples were incubated at 4°C for 1 hour and clarified. Proteins were
then quantified by Bradford method (Bio-Rad Protein Assay). 50 µg of proteins from native
cell lysates were treated with compounds of examples 1 and 2 (from 12.5 µM to 200 µM)
or with a non-specific DUB inhibitor as control for 2 hours at room temperature. The
ubiquitin labeling reaction was initiated by the addition of HA-Ub-VS (8 µg/ml) in labeling
buffer (Tris pH7.6, 50 mM; MgCl , 5 mM; EDTA, 0.5 mM; DTT, 2 mM; ATP, 2 mM;
sucrose, 250 mM) and incubated at room temperature for 15 min. Samples were next
heated at 100°C for 10 minutes and briefly sonicated. They were resolved by SDS-
polyacrylamide gel electrophoresis (SDS-PAGE), transferred to a nitrocellulose
membrane and probed with antibodies against USP7, HA, UCH-L3, CYLD, USP8, USP5,
USP10 and Stat3. Horseradish peroxidase (HRP)-conjugated anti-mouse (Jackson
Laboratories, 115003) or HRP-conjugated anti-rabbit (Cell Signaling, 7074)
antibodies were used as secondary antibodies. Signals were detected by enhanced
chemiluminescence (ECL; Amersham) according to the reagent manufacturer’s
instructions.
RESULTS
1. Use of Ub52 as USP7 and USP8 substrate for evaluation of USP modulators
For the composition according to the invention, the in vitro assays on USP7 and USP8
were carried out according to the following procedure
Preparation of ubiquitin-ribosomal protein fusions
A cDNA encoding the fusion protein between ubiquitin and the ribosomal protein
L40 (ub52 or uba52 or ubiquitin-L40) was amplified from human RNA using a proprietary
human placenta library. The cDNA was subcloned into a bacterial expression vector
(pGEX-2T, GE Healthcare), including an additional flag tag at the carboxyl end of the
encoded protein. The following primers were used for subcloning in frame with the GST
tag the ubiquitin-L40 into pGEX-2T: 5’-cgtggatccatgcagatctttgtgaagaccctc-3’ (SEQ ID NO:1)
and 5’-gcgaattctttatcgtcatcgtctttgtagtctttgaccttcttcttgggacg-3’ (SEQ ID NO:2) into BamHI &
EcoRI restriction sites.
For production and purification of recombinant proteins, the plasmid pGEX-2T-
Ub52-flag was transformed into E. coli BL21 (Stratagene), grown in LB medium
supplemented with 100 mg/ml ampicilin (LB ampi) at 37°C overnight and then diluted
1/100 in LB ampi. The cells were incubated at 37°C until an A600 = 0.6-0.8 was reached.
After induction with 0.1 mM isopropyl- β-D-thiogalactopyranoside (IPTG), the culture was
incubated at 30°C for 180 min.
Cells were harvested by centrifugation for 15 min at 7000x g at 4°C. Bacterial
pellets were lysed in NETN (Tris HCl pH 8.0; EDTA 1 mM; NP40 0.5%; protease inhibitor
cocktail, PMSF 1 mM) and briefly sonicated. Insoluble material was removed by
centrifugation 30 min at 14000x g. GST-Ub52-flag proteins were purified according to
Everett RD et al., EMBO J. (1997) 16, 1519-1530. Briefly, soluble fraction was incubated
on Glutathione beads pre-equilibrated in NETN buffer + 0.5% Milk for 120 min at 4°C.
Flow Through was recovered. Beads were extensively washed: the last wash was
performed in Tris HCl pH 7.6 20 mM; NaCl 100 mM; MgCl 12 mM. Elutions were
performed using 20 mM Reduced Glutathione in 50 mM Tris HCl pH 8.0, NaCl 120 mM.
All fractions were resolved on a 4-12% NuPAGE following 0.1 M DTT treatment and
denaturation and stained with Coomassie Brilliant Blue. Elutions were dialysed over night
at 4°C in Tris HCl pH 7.6 20 mM; NaCl 50 mM; DTT 0.5 mM.
Assaying the fusion protein (GST-Ub52-Flag) using homogenous time-resolved
fluorescence (HTRF®) measurement method
The use of GST-Ub52-Flag is based on the time-resolved measurement of
fluorescence emitted by transfer in homogenous medium.
The reagents used were as follows:
- Anti-flag antibody-europium cryptate conjugate referred to as anti-Flag-K (CIS bio
international), solution at 0.2 µM in 0.8 M KF, 0.1 % Bovine Serum Albumin, Tris HCl 25
mM pH 7.6.
- Anti-GST antibody-XL665 conjugate (CIS bio international), solution at 2.6 µM in 0.8 M
KF, 0.1 % Bovine Serum Albumin, Tris HCl 25 mM pH 7.6.
- GST-Ub52-Flag solution at 14.75 µM & MBP_Ub52 at 37.7 µM prepared from the stock
solution described above in 50 mM Tris HCl pH 7.6, EDTA 0.5 mM, Bovine Serum
Albumin 0.05%, DTT 5 mM.
The assay is carried out on multiwell assay plates. The plates are analyzed on a
PHERAstar fluorimeter (BMG) after an overnight incubation at 4°C (excitation 337 nm,
emission 620 and 665 nm).
Assaying the activity of enzymes of the deubiquitinating type with ubiquitin-ribosomal
protein fusion
The reagents used were as follows:
- Solution of USP7 at 200 pM and USP8 at 400 pM in 50 mM Tris HCl pH 7.6,
Bovine Serum Albumin 0.05%, DTT 5 mM.
- Anti-Flag-K (CIS bio international), solution at 0.2 µM in 0.8 M KF, 0.1 %
Bovine Serum Albumin, Tris HCl 25 mM pH 7.6.
- Anti-GST antibody-XL665 conjugate (CIS bio international), solution at 2.6 µM
in 0.8 M KF, 0.1 % Bovine Serum Albumin, Tris HCl 25 mM pH 7.6.
- GST-Ub52-flag solution at 14.75 µM & MBP_Ub52 at 37.7 µM are prepared by
dilutions from the stock solution described above in 50 mM Tris HCl pH 7.6, EDTA 0.5
mM, Bovine Serum Albumin 0.05%, DTT 5 mM.
The enzyme reaction is carried out by mixing GST-Ub52-flag solution with 5 µl of
USP7 solution (200 pM final) or 5 µl of USP8 (400 pM final). This mixture is incubated for
one hour at room temperature on a multiwell assay plate. A 10 µl mixture of 5 µl of anti-
Flag-K solution (0.2 µM) plus 5 µl of anti-GST-XL665 antibody (2.6 µM) is added to each
well of the multiwell assay plate. The plate is read after an overnight incubation at 4°C on
a PHERAstar fluorimeter (BMG).
The decrease in the signal correlates with the increase in enzyme activity i.e. the
cleavage of GST-Ub52-Flag substrate. The format used is therefore entirely suitable for a
method of assaying an enzyme of the deubiquitinating type such as ubiquitin specific
protease, but also for determining a modulator of this enzyme activity.
Determination of a modulator of enzyme activity of the deubiquitinating type
The same procedures as mentioned above for assaying the activity of enzymes of the
deubiquitinating type are carried out but the various reaction mixtures are incubated with
identical enzyme concentration, in the presence or absence of compounds 1 to 14. Data
(mean values +/- standard deviation) were analyzed as % of control (no compound) and
plotted as percentage versus the Log of the compound concentration using GraphPad
(Prism). Data were fitted to a sigmoidal model (variable slope) and IC (µM) was
determined and presented in the following table.
LCMS :
Example USP7 USP8
m/z [M+H]+
392.09
1 74 >200
426.08
2 77 >200
384.14
3 175 >200
418.12
4 173 >200
412.20
36 >200
330.00
6 >200 >200
390.10
7 174 >200
412.09
8 224 >200
391.98
9 214 >200
422.15
>200 >200
446.20 >200
11 33
398.20 >200
12 42
13 406.30 12 >200
14 440.30 29 >200
2. Selective inhibition of USP7 deubiquitinating activity using UbAMC substrate
The results are summarized on the following table (µM):
Example USP7 USP8 USP5 Uch-L1 Uch-L3 Caspase 3
>200 >200 >200 >200
1 69 >200
2 33 >200 >200 >200 >200 >200
3 100 >200 >200 >200 >200 >200
4 54 >200 >200 >200 >200 >200
>200 >200 >200 >200
37 >200
6 156 >200 >200 >200 >200 >200
7 90 >200 >200 >200 >200 >200
8 nd nd nd nd nd nd
9 155 >200 >200 >200 >200 >200
261 >200 >200 >200 >200 >200
>200 >200 >200 >200 >200
11 40
>200 >200 >200 >200 >200
12 70
13 15 >200 >200 >200 >200 >200
14 24 >200 >200 >200 >200 >200
nd: not determined due to autofluorescence at 460 nm
3. Inhibition of cell viability/proliferation
The results are summarized on the following table (µM):
Cell viability (MTS):
Example HCT116 GI50 Day 3
1 >500
2 67
3 93
4 19
113
6 nd
7 >500
8 nd
9 nd
nd
11 25
12 253
13 103
14 28
4. Selective inhibition of USP7 deubiquitinating activity over a panel of active DUBs in
physiological conditions:
To confirm the specificity observed in vitro from recombinant enzymes, we
performed competition assays using the HAUbVS activity-based probe (ABP) which binds
covalently to the cysteine active site of deubiquitinating enzymes (Borodovsky et al.,
Chem Biol 2002, 9, 1149-1159, Hemelaar et al., Mol Cell Biol 2004, 24, 84-95, Ovaa et
al., Proc Natl Acad Sci U S A 2004 101, 2253-2258). In comparison with recombinant
enzymes, this assay has the advantage to evaluate the effect of inhibitor against
numerous deubiquitinating enzymes in parallel directly in native proteomes through
Western blot analysis by using an anti-HA antibody. In this assay, the inhibitor is added to
total cell lysate and inhibition is determined by the labeling of residual active
deubiquitinating enzymes with the HAUbVS. This labeling followed by immunoblot with the
anti-HA antibody allowed the identification of all active deubiquitinating enzymes from
HEK293 cell lysates (Figure 1, lane 2). This labeling, specific to the active form of DUBs,
is inhibited by a non-specific DUB inhibitor in a non-selective manner (Figure 1, lane 14).
When lysed HEK293 cells were treated with HAUbVS in the absence and presence of
different doses of examples 2 and 5, no change was noted in the immunoblot pattern with
the exception of one band which was almost completely eliminated at the size
corresponding to HA-Ub-VS-USP7 (Figure 1). This effect on USP7 activity was confirmed
with anti-USP7 antibody as indicated by the mobility shift observed between the treated
and non-treated samples (Figure 2).
We next evaluated the effect of USP7 inhibitors on the HAUbVS labelling efficiency
by monitoring individually several deubiquitinating enzymes. To this end, HAUbVS
labeling efficiency on USP7, USP8, USP5, USP10, CYLD and UCH-L3 from HEK293 cell
lysates was first checked using specific antibodies. This labeling was confirmed with all
tested DUBs, as indicated by the mobility shift observed between the HAUbVS-treated
and non-treated samples, albeit with different efficiency rates (Figure 2, lanes 1 and 2).
Potential inhibition of these DUBs was evaluated in the presence of examples 2 and 5 as
well as non-specific DUB inhibitor as control. As expected, we found that the non-specific
DUB inhibitor inhibited all tested DUBs (Figure 2, lane 14). Interestingly, we found that
examples 2 and 5 efficiently blocked labeling of USP7 but not USP8, USP5, USP10,
CYLD or UCH-L3, showing its USP7 specificity over a panel of active DUBs in
physiological conditions (Figure 2). These data taken together indicate that examples 2
and 5 target directly USP7 in native proteomes in physiological conditions and in a dose-
dependent manner without any cross-reaction with all tested deubiquitinating enzymes.
. USP7-specific compounds are reversible inhibitors
To better understand the mechanism of inhibition of USP7 by our USP7-specific
compounds, several experiments were performed. We first characterized the inhibitory
mechanism of example 2 by pre-incubating example 2 (100 µM) with USP7 (100 pM) at
different time points (30min, 1h, 2h, 4h, 6h). The deubiquitinating activity was then
assessed with the Ub-AMC substrate, as described above, and compared with that of
samples treated with DMSO. Interestingly, USP7 inhibition by example 2 (~75%) was
found to be independent of the pre-incubation timing (Figure 3). These data clearly show
that example 2 is not a time-dependent inhibitor of USP7.
The reversibility of inhibition was next determined by measuring the recovery of
enzymatic activity after gel filtration. We incubated USP7 (100 pM) for 4h at room
temperature in the presence of examples 2 and 3 (100 µM) or a control compound used
as irreversible USP7 inhibitor (25 µM). We passed some of each sample through a G50
gel filtration system (Sephadex, G50 superfine, Sigma Aldricht). The deubiquitinating
activity of the G50 eluates was assessed with the Ub-AMC substrate, as described above,
and compared with that of samples not subjected to G50 filtration. The reactions were
monitored using the PHERAstar (BMG Labtech). In the absence of filtration, USP7 activity
was inhibited by examples 2 and 3 and by a control inhibitor used as irreversible
compound (Figure 4A, -G50). Using samples containing these compounds alone, we
confirmed that all compounds, filtered through a G50 column, were entirely retained on
the column (Figure 4B). The filtration of samples containing USP7 and examples 2 and 3
through a G50 column led to the total restoration of USP7 activity, whereas USP7
inhibition by the irreversible control compound could not be reversed by filtration (Figure
4A, +G50). Since an irreversible complex is expected to remain inhibited after washing,
our findings demonstrate that examples 2 and 3 are reversible USP7 inhibitors.
To confirm these findings, we measured the recovery of enzymatic activity after a
rapid and large dilution of the enzyme-compound complex. We incubated USP7 at a
concentration of 100-fold (10 nM) over the concentration required for the activity assay,
with a concentration of inhibitor equivalent to 10-fold the IC (Figure 5A). After a
reasonable equilibration timing (1h), this mixture is diluted 100-fold into reaction buffer
containing UbAMC (300 nM) to initiate the reaction (Figure 5A). Dilution of samples
containing USP7 and examples 2 and 3 led to the almost total restoration of USP7
activity, whereas USP7 inhibition by the irreversible control compound could not be
reversed by dilution (Figure 5B). The dissociation of examples 2 and 3 from USP7 leading
to restoration of greater than approximately 90% of enzymatic activity following rapid and
large dilution clearly demonstrates that examples 2 and 3 are rapid reversible inhibitors.
To characterize complexes involving USP7 and examples 1, 2, 3 and 5, we
evaluated the direct binding by ESI-MS in native conditions (7 mM ammonium acetate pH
7.5), as previously described (Vivat Hannah et al., Future Med Chem. 2010 2(1):35-50).
We first checked the interaction by incubating the protein in the presence of 310 molar
equivalents of examples 1, 2, 3 and 5. All these compounds formed complexes with USP7
to various extends and showed 1:1 binding stoichiometry to USP7 when tested at 3 or 5
molar equivalent excess, as illustrated with examples 1 and 2 in Figure 6. No difference of
mass of compounds was observed in the presence or absence of USP7. In order to
dissociate weak non-covalent complexes, USP7/inhibitor complexes were diluted in
50/50/1 H2O/CH3CN/HCOOH and analyzed under energetic instrumental conditions (Vc
= 120 V, Pi = 4 mbar). In these conditions, no binding was observed between USP7 and
examples 1, 2, 3 and 5 suggesting that USP7 and examples 1, 2, 3 and 5 form non-
covalent complexes.
All these data clearly indicate that these USP7-specific inhibitors bind USP7
through a reversible manner.
Claims (4)
1 6 1 6 wherein the heterocycle is aromatic or non aromatic; optionally substituted or not 10 by OH, CO2H, C(O)NH2, NH2 R is chosen from the group consisting of –C(O)R, -C(O)NHR, -C(O)OR, - C(O)CH -NRR’, -C(O)-CH -CH -CO R, -C(O)-CH -SO H, -C(O)-(C H N), -PO H ,
2 2 2 2 2 3 5 4 3 2 or their ionized form; R independently is chosen from a bond, a linear or branched (C -C )alkyl; 15 R independently is chosen from an hydrogen atom, a linear or branched (C - C )alkyl or an aryl, the alkyl or aryl is optionally substituted by OH, NH , C(O)OH or C(O)NH; or their pharmaceutically acceptable salts or their optical isomers, racemates, diastereoisomers, enantiomers or tautomers, 20 with a pharmaceutical acceptable excipient. 21. A pharmaceutical composition according to claim 20 wherein L is linear or branched (C -C )alkylene-O or a linear or branched (C -C )alkylene optionally interrupted 1 6 1 6 by at least one heteroatom chosen from O, NR or S and/or optionally substituted by : R, 25 OR, NRR’, (C -C )alkyl-OR, (C -C )alkyl-NRR’, OC(O)R, NHC(O)R, NHC(O)NRR’, CN, 1 6 1 6 C(=NH)NHOR. 1 8 3 4 22. A pharmaceutical composition according to claim 20 or 21 wherein R , R , R , R , 5 6 1 2 R , R , L , L , X, q, n are defined as in anyone of claims 2 to 16. 23. A pharmaceutical composition according to claim 20 to 21 wherein the compound of formula (I’) is chosen in the group consisting of: 3-({4-hydroxy[3-(2-methoxyphenyl)propanoyl]piperidinyl}methyl)-3,4- dihydroquinazolinone 35 7-chloro{[1-(2-ethylbutanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolin 3-({1-[2-(3-fluorophenoxy)acetyl]hydroxypiperidinyl}methyl)-3,4-dihydroquinazolin 3-{[4-hydroxy(2-methylpropanoyl)piperidinyl]methyl}-6,7-dimethoxy-3,4- dihydroquinazolinone 5 3-{[4-hydroxy(2-methylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolinone 4-hydroxy([2-methyl(thiophenyl)propanoyl]piperidinyl}methyl)-3,4- dihydroquinazolinone 7-chloro{[1-(3-cyclopentylpropanoyl)hydroxypiperidinyl]methyl}-3,4- dihydroquinazolinone 10 3-{[1-(3-cyclopentylpropanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolin 7-chloro{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolin- 4-one 3-{[4-hydroxy(3-phenylpropanoyl)piperidinyl]methyl}-3,4-dihydroquinazolinone 15 7-chloro({4-hydroxy[2-methyl(thiophenyl)propanoyl]piperidinyl}methyl)-3,4- dihydroquinazolinone 3-({4-hydroxy[3-(thiophenyl)propanoyl]piperidinyl}methyl)-3,4-dihydroquinazolin
3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}-3,4-dihydroquinazolinone 20 3-{[1-(2-benzylpropanoyl)hydroxypiperidinyl]methyl}chloro-3,4-dihydroquinazolin- 4-one or their pharmaceutically acceptable salts or their optical isomers, racemates, diastereoisomers, enantiomers or tautomers. 25 24. Use of a compound of formula (I’) as defined in any one of claims 20 to 23 in the manufacture of a medicament for inhibiting a deubiquitinating enzyme. 25. The use according to claim 24 for inhibiting USP7 (Ubiquitin Specific Protease 7)/HAUSP (Herpes Associated Ubiquitin Specific Protease). 26. Use of a compound of formula (I’) as defined in any one of claims 20 to 23 in the manufacture of a medicament for treating and/or preventing cancer and metastasis, neurodegenerative diseases, Alzheimer’s disease and Parkinson’s disease, immunological disorders, diabetes, bone and joint diseases, osteoporosis, arthritis inflammatory disorders, cardiovascular diseases, viral infections and diseases, and/or viral infectivity and/or latency, bacterial infections and diseases. 27. A use as defined in claim 26, wherein said viral infections and diseases are chosen 5 from herpes simplex-1 or -2 viral infections, hepatitis A, hepatitis C, SARS coronavirus infection and disease, Epstein-Barr virus, rhinoviral infections and diseases, adenoviral infections and diseases, and poliomyelitis. 28. A combination comprising a compound of formula (I’) as defined in any one of 10 claims 20 to 23, with one or more active agents chosen from anti-cancer agents, neurological agents, thrombolytic agents, antioxidant agents, anti-diabetes agents, anti- infective, anti-hypertensive agents, diuretic agents, thrombolytic agents, immunosuppressive agents, cardiovascular agents, immunomodulatory agents, anti- inflammatory agents, antiviral agents, and anti-bacterial agents. 29. A compound of formula (I’) as defined in claim 1 substantially as herein described with reference to any example thereof. 30. A process as claimed in claim 18 or claim 19 substantially as herein described with 20 reference to any example thereof. 31. A pharmaceutical composition as defined in claim 20 substantially as herein described with reference to any example thereof. 25 32. A use as defined in any one of claims 24 to 27 substantially as herein described with reference to any example thereof. 33. A combination as claimed in claim 28 substantially as herein described with reference to any example thereof. zd丨 co>n"co s co> qn"<H 寸^00广914 tl (l(i(til( la8laiaIlIltgg 、;" 、m,, OOT--r-InOJInols IduJex i-si _. 0 T~600N lAla oco 義龜__義_ T"lnIncs!oooCNioiv-OOg 0a.LuexLy ll_IMl一 寸cocsj O 4S 寸 Co 13<x O COT-" CSS 卜 ⑩•r- Dili HA-Ub ^-HA-Ub Example 5 12.5 DfVfSO 2 Example ‘,.,,,•, ,,,,’ 12.5 t 麵議補•灣麵•麵 DMSO HAUbVS »VS-USP7 + USP7 4-HA-Ub»¥S«UCH-L3 4-UCH-L3 HA-Ub~VS-CYLD CYLD «-HA-Ub-VS-USP8 ^-USP8 HA-Ub-VS-USP5 USPS »VS-USP10 ^USP10
4- STATS 2 3 4 5 6 7 8 9 10 11 12 13 14
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP11306096A EP2565186A1 (en) | 2011-09-02 | 2011-09-02 | Selective and reversible inhibitors of ubiquitin specific protease 7 |
| EP11306096.6 | 2011-09-02 | ||
| PCT/EP2012/066741 WO2013030218A1 (en) | 2011-09-02 | 2012-08-29 | Selective and reversible inhibitors of ubiquitin specific protease 7 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| NZ621827A NZ621827A (en) | 2016-07-29 |
| NZ621827B2 true NZ621827B2 (en) | 2016-11-01 |
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