NZ622092B2 - Antibodies against tl1a and uses thereof - Google Patents
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- NZ622092B2 NZ622092B2 NZ622092A NZ62209212A NZ622092B2 NZ 622092 B2 NZ622092 B2 NZ 622092B2 NZ 622092 A NZ622092 A NZ 622092A NZ 62209212 A NZ62209212 A NZ 62209212A NZ 622092 B2 NZ622092 B2 NZ 622092B2
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Abstract
The present disclosure provides TNF-like ligand 1a (TL1a)-binding proteins comprising an antigen binding domain of an antibody which binds specifically to TL1a and inhibits interaction of TL1a and Death Receptor 3 (DR3) and which does not inhibit the interaction of TL1a and Decoy Receptor 3 (DcR3). The present disclosure also provides uses of the TL1a-binding proteins. The present disclosure also provides uses of the TL1a-binding proteins.
Description
ANTIBODIES AGAINST TLla AND USES THEREOF
D APPLICATION DATA
This application claims priority from Australian Patent Application No.
2011904042 entitled “Antibodies against TLla and uses thereof ’ filed on 30 September
2011 and United States Patent Application No. 61/541,590 entitled “Antibodies against
TLla and uses thereof” filed on 30 September 2011. The entire contents of those
applications are hereby orated by reference.
SEQUENCE LISTING
This application is filed er with a ce Listing in electronic form.
The entire ts of the Sequence Listing are hereby incorporated by reference.
FIELD
The present disclosure relates to ns that bind to TLla and uses thereof,
e. g., in therapy, prophylaxis, diagnosis or prognosis.
OUND
TNF-like ligand 1a (TLla, syn. TNF superfamily member 15 (TNFSF15); TLl
and VEGI) is a member of the tumor necrosis factor superfamily, which is expressed by
antigen presenting cells (including dendritic cells, B cells and macrophages), CD4+ and
CD8+ T cells and endothelial cells and can be expressed on the cell surface or secreted
as a soluble cytokine. The receptor for TLla, Death Receptor 3 (DR3) is expressed by
a variety of cells, including CD4+ and CD8+ T cells, NK cells, NKT cells and FOXP3+
regulatory T (Treg) cells.
TLla can also bind a decoy receptor (DcR3), which is a competitive inhibitor of
DR3. DcR3 also acts as a decoy receptor for gand (Fas-L) and lymphotoxin-like
inducible protein that competes with glycoprotein D for g virus entry
mediator on T-cells (LIGHT). Accordingly, DcR3 is an important regulator of several
signal transduction pathways.
The TL1a/DR3 signaling pathway has been implicated in l biological
systems, which are associated with human diseases. For example, TLla has been
shown to play a role in immunity and in angiogenesis.
Using mice deficient in TLla and/or DR3, researchers have also shown that
inhibiting this pathway can provide prophylactic or therapeutic benefit in several
immune-mediated conditions, such as, experimental mune encephalomyelitis
(EAE; a model of multiple sclerosis), colitis, inflammatory bowel disease, asthma and
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arthritis. TLla has also been shown to promote formation of foam cells and
atherosclerotic plaques.
It will be apparent to the skilled n from the foregoing that TLla plays an
ant role in biological processes ed in several important human diseases.
Accordingly, compounds that inhibit TLla activity are desirable, e.g., for their
therapeutic, prophylactic, stic and prognostic uses.
SUMMARY
The inventors have produced TLla-binding proteins comprising antigen binding
domains of antibodies which are capable of specifically binding to TLla and inhibiting
ction of TLla and DR3 (thereby neutralizing TLla activity(ies)) t
inhibiting interaction of TLla and DcR3. Without being bound by any theory or mode
of , the inventors reasoned that such TLla-binding proteins may be capable of
reducing or preventing signaling of TLla through DR3 without significantly disturbing
the homeostatic interaction of DcR3 and TLla. This preserves the natural nistic
effects of DcR3 on TLla-DR3 interactions, which may be advantageous e DcR3
also regulates the amount of free Fas-L and LIGHT available for binding to their
receptors (Fas and H-VEM, respectively). Since Fas-mediated killing plays a role in
cancer surveillance, potential downstream consequences of sing the amount of
DcR3 to bind to Fas-L could include increased susceptibility to cancer. Again, without
being bound by theory or mode of action, proteins that specifically inhibit interaction of
TLla and DR3, but not DcR3, could be advantageous in treating disease but without
compromising safety.
A subclass of the TLla-binding proteins identified by the inventors was also
found to inhibit or prevent apoptosis of TF—l cells induced by human TLla at low
concentrations, i.e., the antibodies had a low effective concentration or EC50. TLla-
binding proteins capable of inhibiting or ting TLla activity (e. g., TLla-induced
apoptosis of TF—l cells) are sometimes referred to herein as highly potent TLla-binding
proteins.
The inventors have also identified a region of TLla which is bound by a highly
potent inding protein which binds specifically to TLla and inhibits interaction
of TLla with DR3 without inhibiting the ability of TLla to interact with DcR3.
The TLla-binding proteins identified by the inventors form the basis for s
therapeutic/prophylactic/diagnostic/prognostic uses. This is demonstrated by the
inventors’ use of a inding protein of the disclosure to treat accepted models of
colitis, with the protein showing efficacy at least equal to the current standard of care
for this condition.
According, the present invention provides an isolated or recombinant TL1abinding
protein comprising an antigen binding domain of an antibody, wherein the
TL1a-binding protein reduces the level of apoptosis of TF-1 cells cultured in the
presence of human TL1a produced by human cells and cycloheximide with an EC50
about 0.75nM or less, and
wherein the EC50 is ined by a method comprising contacting about
7.5x104 TF-1 cells with about 100ng human TL1a per mL of culture and about
L cycloheximide and the TL1a-binding n at a concentration of about
5μg/mL or less for about 4 to 5 hours.
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Accordingly, the present disclosure provides an isolated or recombinant TLla-
binding protein comprising an antigen binding domain of an antibody, wherein the
antigen binding domain specifically binds to TLla and, wherein the TLla-binding
protein ts interaction of TLla and DR3 and does not inhibit interaction of TLla
and DcR3.
In one example, the TLla-binding protein does not detectably reduce interaction
of TLla and DcR3. For example, the effect of the TLla-binding n on ction
of TLla and DcR3 is assessed using a competition enzyme linked immunosorbent
assay (ELISA). For example, the TLla-binding protein is incubated with TLla (e. g.,
human TLla) and then contacted with a polypeptide comprising DcR3 (e.g., human
DcR3 (thR3)) fused to an Fc region of an antibody (“DcR3/PC”) and the level of
bound TLla is detected. In one example, the level of bound TLla in the ce or
absence of the n is not icantly different and/or is insufficiently different to
permit calculation of an EC50.
In one example, the level of inhibition of interaction of TLla and DcR3 (or
DcR3/Fe) in the presence of the TLla-binding protein expressed as a percentage of the
level of binding in the absence of the protein is 25% or less, or 22% or less, or 20% or
less, or 18% or less, or 15% or less, or 12% or less, or 10% or less, or 7% or less, or 5%
or less.
In one example, the ability of a TLla-binding n to inhibit interaction of
TLla and DR3 or DcR3 is assessed by immobilizing DcR3/Fc or a polypeptide
comprising DR3 (e.g., human DR3 (hDR3)) fused to a Fc region of an antibody
(DR3/PC) on a solid or semi-solid e (e.g., an ELISA plate) at a concentration of
about 2ug/ml. The TLla-binding protein is then contacted with biotinylated human
TLla (at a concentration of about 1 ug/ml) for about 30 minutes then added to the
immobilized DcR3/Fc or DR3/F0. Following washing, bound TLla is detected. To
determine percentage binding or inhibition, data are normalized by expression as a
percentage of maximum binding of TLla to the immobilized DcR3/Fc or DR3/Fc in the
absence of a TLla-binding protein. By ating the level of inhibition at multiple
concentrations of the TLla-binding n, an EC50 can be determined.
In one example, the TLla-binding protein inhibits interaction of TLla and DR3
(or DR3/PC) but not TLla and DcR3 (or DcR3/PC).
For example, the TLla-binding protein inhibits interaction of DR3/Fc and TLla
with an EC50 of from about 20nM to about 10fM, or an EC50 of 20nM or less, such as,
15nM or less, for example, llnM or less, for example 5nM or less. In one example, the
EC50 is 5nM or less. For e, the EC50 is 3nM or less. For example, the EC50 is
2.5nM or less. For example, the EC50 is 1nM or less. For example, the EC50 is 0.5nM
or less. In one e, the EC50 is assessed using a competition enzyme linked
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immunosorbent assay (ELISA). For example, various concentrations of the TLla-
binding protein are incubated with TLla (e.g., human TLla) (e.g., about lug/ml of
TLla) and then contacted with the DR3/Fc (e. g., about 2ug/ml of the DR3/Fc) and the
level of bound TLla is detected. The concentration of protein at which half maximal
inhibition of binding to TLla is detected is considered the EC50.
In one e, the TLla-binding protein neutralizes TLla activity in or on a
cell by interfering with TLla and DR3 ctions.
In one example, the TLla-binding protein binds to the extracellular domain of
TLla, such as the extracellular domain of human TLla.
In one example, the TLla-binding protein binds to human TLla produced by
mammalian cells, such as human cells.
ary TLla-binding proteins of the present disclosure reduce the level of
apoptosis of TF-l cells cultured in the presence of human TLla, such as human TLla
produced by mammalian cells (e.g., human cells) (e.g., about lOOng human TLla per
mL of culture) and cycloheximide. For e, about 7x104 to 8x104 TF-l cells (e. g.,
7.5xlO4 cells) are contacted with about lug human TLla per mL of culture and
cycloheximide. For example, the TLla-binding protein s the level of apoptosis of
the TF-l cells with an EC50 (i.e., a concentration of the TLla-binding protein that
achieves 50% of the maximum inhibition of TLla-induced apoptosis of TF-l cells
achieved by the inding protein) of 25nM or less. In one example, the EC50 is
5nM or less. In one example, the EC50 is 2nM or less. In one example, the EC50 is
l.5nM or less or l.2nM or less or l.lnM or less. In one example, the EC50 is lnM or
less. In one example, the EC50 is 0.75nM or less. In one example, the EC50 is 0.3nM or
less. In one example, the EC50 is 0.lnM or less. In one example, the EC50 is from
about l.5nM to about lOfM, such as from about lnM to about 50fM, for example, from
about lnM to about lOOfM.
In one example, the TLla-binding protein binds to TLla on the surface of a cell
with an EC50 (i.e., a concentration of the TLla-binding protein that achieves 50% of the
maximum g to the cell achieved by the TLla-binding protein) of about lOnM or
less, e.g., as determined using flow cytometry. In one example, the flow cytometry is
performed with about 2x105 to 3x105 cells (e.g., 2.5x105 cells). In one example, the
EC50 is 5nM or less. In one e, the EC50 is 2nM or less. In one example, the
EC50 is from about 10.0nM or 5.0nM or l.0nM or 0.5nM or 0.lnM to about lOfM.
The present disclosure also provides an isolated or recombinant inding
protein sing an antigen binding domain of an antibody, wherein the antigen
binding domain binds specifically to TLla and inhibits the interaction of biotinylated
TLla and DR3/Fc with an EC50 of about 2.5nM or less, such as lnM or less or from
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about 2.5nM, or about 1.0nM, or about 0.5nM, or about 0.1nM to about 10fM in a
competition ELISA,
wherein the DR3/Fc is immobilized on a solid or semi-solid substrate (e. g., a
solid ate such as an ELISA plate) at a concentration of about 2 ug/mL, and
wherein the biotinylated TLla is contacted for about 30 minutes at a concentration of
about 1 ug/mL with the TLla binding protein at a concentration range of from about 10
ug/mL to about 0.01 ug/mL and is then contacted to the immobilized DR3/Fc,
and wherein the TL1a-binding protein does not detectably reduce interaction of
biotinylated TLla and DcR3/Fc in a competition ELISA compared to the level of the
binding of biotinylated TLla to DcR3/Fc in the absence of the TLla-binding protein,
wherein the DcR3/Fc is lized on a solid or semi-solid ate (e.g., a solid
substrate such as an ELISA plate) at a concentration of about 2 ug/mL, wherein the
biotinylated TLla is contacted for about 30 s at a concentration of about 1 ug/mL
with the TLla-binding protein at a concentration of from about 10 ug/mL to 0.1 ug/mL
and is then ted to the lized DcR3/Fc.
The present disclosure also provides an isolated or recombinant TLla-binding
protein comprising an antigen binding domain of an antibody, wherein the antigen
binding domain binds specifically to TLla and inhibits the interaction of biotinylated
TL1a and DR3/Fc with an EC50 of about 2.5nM or less, such as 1nM or less or from
about 2.5nM, or about 1.0nM, or about 0.5nM, or about 0.1nM to about 10fM in a
competition ELISA,
n the DR3/Fc is lized on a solid or semi-solid substrate (e. g., a
solid substrate such as an ELISA plate) at a concentration of about 2 ug/mL, and
wherein the biotinylated TLla is contacted for about 30 minutes at a concentration of
about 1 ug/mL with the TLl-a binding protein at a tration range of from about
ug/mL to about 0.01 ug/mL and is then ted to the immobilized DR3/Fc,
and wherein the TL1a-binding protein does not detectably reduce interaction of
biotinylated TLla and DcR3/Fc in a competition ELISA compared to the level of the
binding of biotinylated TLla to DcR3/Fc in the absence of the TLla-binding protein,
and wherein the DcR3/Fc is immobilized on a solid or semi-solid substrate (e.g., a solid
substrate such as an ELISA plate) at a concentration of about 2 ug/mL, wherein the
ylated TLla is contacted for about 30 minutes at a concentration of about 1
ug/mL with the TL1a-binding protein at a concentration of from about 10 ug/mL to 0.1
ug/mL and is then contacted to the immobilized c.
and wherein the TLla-binding protein reduces the level of apoptosis of TF-l
cells cultured in the presence of human TL1a produced by human cells and
cycloheximide with an EC50 (Le, a concentration of the TL1a-binding protein that
achieves 50% of the maximum inhibition of TLla-induced apoptosis of TF-l cells
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achieved by the TLla-binding protein) of 25nM or less, or from about 1.5 nM or 1.0nM
or 0.5nM or 0.1nM or 0.05nM to about 10fM
wherein about 7.5x104 TF-l cells are contacted with about lOOng human TLla
per mL of culture and about 10ug/ml cycloheximide with the TLla-binding protein at a
concentration of about 5ug/mL or less for about 4 to 5 hours.
In one example, the TLla is biotinylated at one site, i.e., the biotin is linked to
only one amino acid in TLla.
In one example, the TLla-binding protein does not detectably reduce interaction
of the ylated TLla and DcR3/Fc in the competition ELISA compared to the level
of the binding of biotinylated TLla to DcR3/Fc in the e of the TLla-binding
protein, wherein the biotinylated TLla is contacted for about 30 minutes at a
concentration of about 1 ug/mL with the TLla-binding protein at a concentration of
about 100 ug/mL and is then contacted to the immobilized DcR3/Fc.
In one example, the TLla-binding protein does not detectably reduce interaction
of the biotinylated TLla and DcR3/Fc in the competition ELISA compared to the level
of the binding of biotinylated TLla to DcR3/Fc in the absence of the TLla-binding
protein, wherein the biotinylated TLla is contacted for about 30 minutes at a
concentration of about 1 ug/mL with the TLla-binding protein at a concentration of
about 10 ug/mL and is then contacted to the immobilized DcR3/Fc.
In one example, the TLla-binding protein reduces the level of sis of the
TF-l cells with an EC50 of 22nM or less. In one e, the EC50 is lOnM or less. In
one example, the EC50 is 5nM or less. In one e, the EC50 is 2nM or less. In one
e, the EC50 is l.5nM or less or l.2nM or less or l.lnM or less. In one example,
the EC50 is lnM or less. In one example, the EC50 is 0.75nM or less. In one e,
the EC50 is 0.3nM or less. In one e, the EC50 is 0.1nM or less.
The t sure additionally, or altematively, provides an isolated or
recombinant TLla-binding protein comprising an antigen binding domain of an
antibody, wherein the antigen binding domain specifically binds to TLla and, wherein
the TLla-binding protein inhibits interaction of TLla and DR3 and does not inhibit
interaction of TLla and DcR3, and wherein the TLla-binding protein binds a mutant
form of soluble human TLla comprising a sequence set forth in SEQ ID NO: 202 in
which the arginine at on 32 has been substituted with alanine and/or the arginine
at position 85 has been substituted with alanine at a level that is at least 75% lower than
the level with which the TLla-binding protein binds to soluble human TLla
comprising a sequence set forth in SEQ ID NO: 202,
In one example, the mutant form of soluble human TLla is immobilized on a
solid or olid substrate (e.g., a solid substrate such as an ELISA plate) at a
concentration of about 1 ug/mL, and wherein the TLla binding protein at a
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tration range of from about 10 ug/mL to about 0.01 ug/mL is then contacted to
the immobilized mutant TLla.
In one example, the TLla-binding protein binds a mutant form of soluble human
TLla comprising a sequence set forth in SEQ ID NO: 202 in which the arginine at
position 32 has been substituted with alanine and/or the arginine at position 85 has been
substituted with alanine at a level that is no greater than 25% of the level with which
the protein binds to soluble human TLla comprising a sequence set forth in SEQ ID
NO: 202. For example, the level of binding of the TLla-binding protein to the mutant
form of e human TLla is no greater than 25% of the level with which the protein
binds to soluble human TLla, when the TLla—binding protein is tested at a
concentration of 10 ug/mL.
The t disclosure additionally, or altematively, provides an isolated or
recombinant TLla-binding n comprising an antigen binding domain of an
antibody, n the antigen binding domain specifically binds to TLla and, wherein
the TLla-binding protein inhibits ction of TLla and DR3 and does not inhibit
ction of TLla and DcR3, and n the TLla-binding protein binds a mutant
form of e human TLla comprising a sequence set forth in SEQ ID NO: 202 in
which the arginine at position 32 has been substituted with alanine and/or the arginine
at position 85 has been substituted with e at a level that is at least 75% lower than
the level with which the protein binds to soluble human TLla comprising a sequence
set forth in SEQ ID NO: 202,
wherein the mutant form of TLla is immobilized on a solid or semi-solid
substrate at a concentration of about 1 ug/mL, and wherein the TLla binding protein at
a tration of 10 ug/mL is then contacted to the immobilized mutant TLla.
In one example, the mutant form of soluble human TLla comprises a sequence
set forth in SEQ ID NO: 202 in which the arginine at position 32 has been substituted
with alanine.
In one example, the mutant form of soluble human TLla comprises a ce
set forth in SEQ ID NO: 202 in which the arginine at position 85 has been substituted
with alanine.
In one example, the mutant form of soluble human TLla comprises a sequence
set forth in SEQ ID NO: 202 in which the arginine at position 32 has been substituted
with alanine and in which the arginine at position 85 has been substituted with alanine.
In one example, the level of binding of the TLla-binding protein to the mutant
form of soluble human TLla is at least 80% or 85% or 90% or 95% lower than the
level with which the protein binds to soluble human TLla comprising a sequence set
forth in SEQ ID NO: 202.
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In one example, the inding protein does not detectably bind to the mutant
form of soluble human TLla.
In one example, the binding of the TLla-binding protein to soluble human TLla
or a mutant form thereof is assessed using e Plasmon Resonance. For example,
the soluble human TLla or a mutant form thereof is immobilized (e. g., at a
concentration of about 1 ug/mL) and the TLla-binding protein (e.g., at a concentration
of about 500 ng/mL) ted to the immobilized e human TLla or a mutant
form f and g detected by Surface Plasmon Resonance. By comparing the
level of binding to the soluble human TLla or a mutant form thereof a comparison can
be made to determine a TLla-binding protein that binds at a level that is at least 75%
lower than the level with which the protein binds to soluble human TLla.
In one example, the binding of the TLla-binding protein to soluble human TLla
or a mutant form f is assessed using ELISA. For example, the soluble human
TLla or a mutant form thereof is immobilized (e.g., at a concentration of about 1
ug/mL) and the TLla-binding protein (e.g., at a concentration of about 10 ug/mL)
contacted to the immobilized soluble human TLla or a mutant form thereof and
binding ed by ELISA (e. g., using standard methods in the art).
In one example, the TLla-binding protein binds to an epitope within TLla
comprising residues corresponding to arginine at position 32 of SEQ ID NO: 202 and
the arginine at position 85 of SEQ ID NO: 202. In one example, the epitope is a
conformational epitope.
In one example, the TLla-binding n binds at least at amino acid residues
arginine at on 32 and arginine at position 85 of a human TLla which comprises
an amino acid sequence as set forth in SEQ ID NO:202.
Exemplary TLla-binding proteins having the binding characteristics set forth in
the foregoing paragraphs will be apparent to the skilled artisan from the description
herein and include those comprising the following pairs of VH and VL:
(i) a VH comprising a sequence set forth in SEQ ID NO: 94 and a VL sing a
ce set forth in SEQ ID NO: 95;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 137 and a VL comprising a
sequence set forth in SEQ ID NO: 138;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 162 and a VL comprising a
sequence set forth in SEQ ID NO: 172; or
(iv) a VH comprising a sequence set forth in SEQ ID NO: 173 and a VL comprising a
sequence set forth in SEQ ID NO: 174.
VH and VL falling within the foregoing sequences will be apparent to the skilled
person from the description herein and are to be taken to apply mutatis mutandis to the
present example of the disclosure.
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In one example, a TLla-binding protein of the disclosure inhibits ction of
TLla from human, cynomolgus monkey or rhesus monkey and DR3. Such TLla-
binding proteins are useful for characterization in animal models of human disease.
In one example, a TLla-binding protein of the disclosure does not detectably
inhibit interaction of TLla from mouse, pig, rabbit or guinea pig and DR3, e.g., the
TLla-binding protein does not detectably t the level of apoptosis of TF-l cells
cultured in the presence of the relevant TLla, e. g. as determined using an assay
described herein.
In one example, a TLla-binding protein of the sure detectably ts
interaction of TLla from rat and DR3. For example, the TLla-binding protein
detectably inhibits the level of apoptosis of TF—l cells cultured in the presence of the
relevant TLla, e. g. as determined using an assay described herein.
In one example, a TLla-binding protein of the sure detectably binds to an
isoform of TLla consisting of amino acids 72-251 of SEQ ID NO: 123 and/or to an
isoform of TLla consisting of amino acids 84-251 of SEQ ID NO: 123.
For example, binding is assessed by an ELISA in which the isoform of TLla is
immobilized at a concentration of 1 ug/ml and the TLla-binding protein is contacted to
the isoform and the level of binding assessed.
The present disclosure additionally or alternatively provides an isolated or
recombinant TLla-binding protein comprising an antigen g domain of an
antibody comprising any one or more of the following:
(i) aVH sing a sequence set forth in SEQ ID NO: 94 and a VL comprising a
sequence set forth in SEQ ID NO: 95;
(ii) aVH comprising a sequence set forth in SEQ ID NO: 137 and a VL comprising a
sequence set forth in SEQ ID NO: 138;
(iii) aVH comprising a sequence set forth in SEQ ID NO: 162 and a VL comprising a
sequence set forth in SEQ ID NO: 172; or
(iv) aVH comprising a sequence set forth in SEQ ID NO: 173 and a VL comprising a
sequence set forth in SEQ ID NO: 174.
The present disclosure additionally or alternatively provides an isolated or
inant TLla-binding n comprising an antigen binding domain of an
antibody comprising any one or more of the following:
(i) aVH comprising a sequence set forth in SEQ ID NO: 2 and a VL sing a
sequence set forth in SEQ ID NO: 6;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 10 and a VL comprising a
ce set forth in SEQ ID NO: 14;
(iii) a VH sing a sequence set forth in SEQ ID NO: 18 and a VL comprising a
sequence set forth in SEQ ID NO: 22;
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(iv) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(V) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID NO:38;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(vii) a VH comprising a sequence set forth in SEQ ID NO: 50 and a VL comprising a
ce set forth in SEQ ID NO: 54;
(viii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(X) a VH comprising a ce set forth in SEQ ID NO: 66 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiv) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 82;
(xv) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvi) a VH comprising a sequence set forth in SEQ ID NO: 90 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
ce set forth in SEQ ID NO: 62;
) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising
a ce set forth in SEQ ID NO: 164;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL comprising a
sequence set forth in SEQ ID NO: 163;
(xx) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 165;
(xxi) a VH sing a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 166;
(xxii) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 167;
ation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxiii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(XXiV) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL sing a
sequence set forth in SEQ ID NO: 169;
(XXV) a VH sing a ce set forth in SEQ ID NO: 161 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
(XXVi) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(XXVii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
i) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(xxix) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXX) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxi) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxiii) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL
sing a sequence set forth in SEQ ID NO: 46;
) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXV) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXVi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a ce set forth in SEQ ID NO: 164;
(XXXVii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 165;
(XXXViii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 166;
(XXXiX) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 167;
(X1) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(Xli) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 169;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(Xlii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 170;
(Xliii)a VH comprising a ce set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 171;
(XliV) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
ce set forth in SEQ ID NO: 172;
(le) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(XlVi) a VH sing a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(XlVii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(XlViii)a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(Xlix) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(l) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL sing a
sequence set forth in SEQ ID NO: 193;
(li) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(hi) a VH comprising a sequence set forth in SEQ ID NO: 182 and a VL comprising a
ce set forth in SEQ ID NO: 195;
(liii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(liV) a VH comprising a sequence set forth in SEQ ID NO: 184 and a VL comprising a
sequence set forth in SEQ ID NO: 197;
(lV) a VH sing a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(lVi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; or
(lVii) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200.
In a particular example, there is provided an isolated or recombinant TLla-
binding protein comprising an antigen binding domain of an antibody comprising a VH
and a VL, wherein the VH and VL respectively comprise ces selected from the
group consisting of
(i) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(ii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 106 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL d by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 107 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(iv) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 222 or a nucleic acid that hybridizes
o under moderate to high stringency conditions and a VL encoded by a nucleic
acid sing a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a c acid that hybridizes thereto under moderate to high
ency conditions;
(V) a VH sing a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(Vi) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 223 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a nucleic acid that hybridizes thereto under te to high
stringency conditions;
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(Viii) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that izes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 229 or a nucleic acid that hybridizes thereto under moderate to high
stringency ions;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
ce set forth in SEQ ID NO: 191;
(X) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a c acid that hybridizes thereto under moderate to high
stringency conditions;
ation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xi) a VH comprising a ce set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(xii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a c acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 231 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(xiV) a VH encoded by a nucleic acid comprising a ce at least about 95%
cal to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xV) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(xVi) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 225 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a c acid that izes thereto under moderate to high
stringency conditions;
(xVii) a VH comprising a ce set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(xViii) a VH encoded by a nucleic acid sing a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a ce at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a c acid that hybridizes thereto under moderate to high
stringency conditions;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(xx) a VH encoded by a nucleic acid comprising a sequence at least about 95%
cal to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a ce at least about 95% identical to the sequence set forth in
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
SEQ ID NO: 232 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199;
(XXii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
cal to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 232 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xxiii) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200; and
(XXiV) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes
thereto under moderate to high ency ions and a VL encoded by a c
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 233 or a nucleic acid that hybridizes o under moderate to high
stringency conditions.
The present sure additionally or alternatively provides an isolated or
recombinant TLla-binding protein comprising an antigen binding domain of an
antibody comprising a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 46, wherein the VH and/or VL comprise
one or more of the following substitutions or groups of substitutions:
(i) the VH comprises an alanine at position 16 of SEQ ID NO: 42;
(ii) the VH comprises an alanine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iii) the VH comprises a serine at on 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iv) the VH comprises a histidine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(V) the VH comprises a leucine at position 100 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(Vi) the VH comprises an ic acid at position 100 of SEQ ID NO: 42 and the VL
ses a threonine at on 76 of SEQ ID NO: 46;
(Vii) the VH comprises a ne at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Viii) the VH comprises a proline at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(ix) the VH comprises a glutamine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(X) the VH comprises a lysine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xi) the VH comprises an alanine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xii) the VH comprises a serine at position 1 01 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xiii) the VH comprises a histidine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xiV) the VH comprises a leucine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xV) the VH comprises an aspartic acid at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xVi) the VH comprises a tyrosine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvii) the VH comprises a glutamine at position 101 of SEQ ID NO: 42 and the VL
ses a threonine at on 76 of SEQ ID NO: 46;
(xViii) the VH comprises a lysine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xix) the VH comprises an alanine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xx) the VH comprises a serine at position 1 02 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxi) the VH comprises a histidine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxii) the VH comprises a leucine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xxiii) the VH comprises a tyrosine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiV) the VH comprises a e at on 102 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxv) the VH comprises a glutamine at position 102 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xxvi) the VH comprises a lysine at position 102 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xxVii) the VH comprises an alanine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
ation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(XXViii) the VH comprises a serine at position 103 of SEQ ID NO: 42 and the VL
ses a ine at position 76 of SEQ ID NO: 46;
(xxix) the VH comprises a histidine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXX) the VH comprises a leucine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxi) the VH comprises an aspartic acid at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXii)the VH comprises a tyrosine at position 103 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxxiii) the VH comprises a e at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiV) the VH comprises a glutamine at position 103 of SEQ ID NO: 42 and the
VL comprises a ine at position 76 of SEQ ID NO: 46;
(XXXV) the VH comprises a lysine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVi) the VH comprises a serine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVii) the VH comprises a histidine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXViii) the VH comprises a leucine at position 104 of SEQ ID NO: 42 and the VL
ses a ine at position 76 of SEQ ID NO: 46;
(xxxix) the VH comprises an aspartic acid at position 104 of SEQ ID NO: 42 and
the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(X1) the VH comprises a tyrosine at position 104 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(Xli) the VH comprises a proline at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlii) the VH comprises a ine at on 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xliii) the VH comprises a lysine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XliV) the VH comprises an alanine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(le) the VH comprises a histidine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVi) the VH comprises a leucine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(XlVii) the VH comprises an aspartic acid at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(XlViii)the VH comprises a tyrosine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlix) the VH comprises a e at on 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1) the VH comprises a glutamine at position 105 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(11) the VH comprises a lysine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(hi) the VH comprises an alanine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liii) the VH comprises a serine at position 1 07 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liV) the VH comprises a histidine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1V) the VH comprises a leucine at on 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVi) the VH comprises an aspartic acid at position 107 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(lVii) the VH comprises a tyrosine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lViii) the VH ses a proline at position 107 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(lix) the VH comprises a glutamine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1X) the VH comprises a lysine at position 1 07 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lxi) the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 23 of SEQ ID NO: 46;
(lxii) the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 28 of SEQ ID NO: 46;
(lxiii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a tyrosine at position 33 of SEQ ID NO: 46;
(lXiV) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 34 of SEQ ID NO: 46;
(lXV) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an asparagine at position 53 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
ed set by jxd
(lxvi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
ses a serine at position 54 of SEQ ID NO: 46;
(lxvii) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 82 of SEQ ID NO: 46;
(lxviii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 95 of SEQ ID NO: 46;
(lxix) the VH comprises a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 96 of SEQ ID NO: 46;
(lXX) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXi) the VH ses a serine at position 47 of SEQ ID NO: 42 and the VL ses
a threonine at position 23 of SEQ ID NO: 46;
(lxxii) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73, an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 76 of SEQ ID
NO: 46;
(lxxiii) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a serine at
position 24 and a threonine at position 76 each relative to SEQ ID NO: 46;
) the VH comprises a proline at position 41, a e at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23, a serine at position 24 and a threonine at position 76 each relative to
SEQ ID NO: 46;
(lxxv) the VH ses a proline at position 41, a leucine at position 51 and a ic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lxxvi) the VH comprises a proline at on 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 76 of SEQ ID NO: 46;
(lxxvii) the VH comprises a proline at position 41, a leucine at on 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 23, a serine at position 24 and a
threonine at position 76 each relative to SEQ ID NO: 46;
(lxxviii) the VH comprises a proline at position 41, a leucine at on 51, a
glutamic acid at position 102 and an e at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXiX) the VH comprises a proline at position 41, an alanine at on 72, an aspartic
acid at position 73, an arginine at position 74 and a threonine at position 76 each
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24 and a threonine at position 76 each relative to SEQ ID NO: 46;
(1)000 the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73, an arginine at position 74 and a ine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24, a threonine at position 76 and a glutamic acid at position 51 each relative
to SEQ ID NO: 46;
(lxxxi) the VH comprises a proline at position 41, a leucine at position 51, an alanine at
position 72, an ic acid at position 73, an arginine at position 74, a threonine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL ses a threonine at position 23, a serine at position
24, a threonine at position 76 and a ic acid at position 51 each relative to SEQ
ID NO: 46; and
(lxxxii) the VH comprises a proline at position 41, a leucine at on 51, an
alanine at on 72, an aspartic acid at position 73, an arginine at position 74, a
threonine at position 76, a glutamic acid at on 102 and an alanine at position 105
each relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a
serine at position 24, a threonine at position 76 and a glycine at position 51 each
ve to SEQ ID NO: 46.
In one example, the TLla-binding protein comprises an antigen binding domain
of an antibody comprising any one or more of the ing:
(i) a VH comprising a ce set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID NO:38; and
(iii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 46.
In one particular example, there is provided an isolated or recombinant TLla-
binding protein comprising an antigen g domain of an antibody comprising a VH
and a VL, wherein the VH and VL respectively comprise sequences selected from the
group consisting of
(i) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(iv) a VH sing a sequence set forth in SEQ ID NO: 177 and a VL comprising a
ce set forth in SEQ ID NO: 190;
(V) a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(vii) a VH comprising a ce set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(viii) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(x) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(xi) a VH comprising a ce set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; and
(xii) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
ce set forth in SEQ ID NO: 200.
In one example, a TLla-binding protein of the present disclosure comprises an
antigen binding domain comprising a CDR3 of a variable region of an antibody recited
above. For example, the CDR3 is d according to the Kabat numbering system
and comprises a sequence set forth in any one of SEQ ID NOs: 5, 9, 13, 17, 21, 25, 29,
33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93 or a sequence labeled as
“CDR3” and shown in bold text in Figure 1A to 1H or in Figure 9B or 9C or a
sequence comprising amino acids 99 to 108 of any one of SEQ ID NOs: 175 to 187 or
amino acids 91 to 100 of any one of SEQ ID NOs: 188 to 200 or 234.
For example, the CDR3 is defined according to the Kabat numbering system and
comprises a sequence set forth in SEQ ID NO: 45 or 49 or a sequence comprising
amino acids 99 to 108 of any one of SEQ ID NOs: 175 to 181, 183 or 185 to 187 or
amino acids 91 to 100 of any one of SEQ ID NOs: 188 to 194, 196 or 198 to 200.
In another example, the CDR3 (e.g., a HCDR3) is defined ing to the
enhanced Chothia numbering system and comprises a sequence labeled as “CDR3” and
shown in underlined text in any one of Figures 1A, 1C, 1D or 1E or 9B.
In one example, the CDR3 comprises a sequence AXzFEY (SEQ ID
NO: 143), wherein X1 is aspartic acid or glutamic acid and X2 is serine or alanine.
In one example, the CDR3 comprises a sequence EXlPX2X3AX4FX5Y
(SEQ ID NO: 235), wherein:
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
X1 is an amino acid ed from the group consisting of valine, alanine, serine,
histidine, aspartic acid, leucine, tyrosine, proline, glutamine or lysine;
X2 is an amino acid selected from the group consisting of alanine, serine, histidine,
lysine, glutamic acid or aspartic acid;
X3 is an amino acid selected from the group ting of alanine, serine, aspartic acid,
ne or threonine;
X4 is an amino acid selected from the group consisting of serine, alanine, histidine,
leucine, ic acid or ne; and
X5 is an amino acid ed from the group consisting of alanine, serine, histidine,
leucine, aspartic acid, proline, glutamine, glutamic acid or lysine.
In one example, the CDR3 (e. g., a LCDR3) comprises a sequence set forth in
SEQ ID NO: 141 (or sequence labeled as CDR3 in bold text of the sequence d
“Consensus” in Figure 1F or 9C).
For example, the antigen binding domain comprises three CDRs of a variable
region of the antibody.
In some examples of the disclosure, the antigen binding domain is an antibody
variable region comprising three CDRs of a variable region comprising an amino acid
sequence set forth in any one of SEQ ID NOs: 2, 6, 10, 14, 18, 22, 26, 30, 34, 38, 42,
46, 50, 54, 58, 62, 66, 70, 74, 78, 82, 86, 90, 94, 95, 137, 138, 152 to 200 or 234.
In some examples, the antigen binding domain is an antibody variable region
comprising three CDRs of a variable region comprising:
(a) a VH comprising a sequence set forth in SEQ ID NO: 42 and sing one or
more of the following substitutions or groups of substitutions:
(i) an alanine at position 16 of SEQ ID NO: 42;
(ii) an alanine at position 100 of SEQ ID NO: 42;
(iii) a serine at position 100 of SEQ ID NO: 42;
(iv) a histidine at position 100 of SEQ ID NO: 42;
(v) a leucine at on 100 of SEQ ID NO: 42;
(vi) an aspartic acid at position 100 of SEQ ID NO: 42;
(vii) a tyrosine at position 100 of SEQ ID NO: 42;
(viii) a proline at position 100 of SEQ ID NO: 42;
(ix) a glutamine at position 100 of SEQ ID NO: 42;
(x) a lysine at position 100 of SEQ ID NO: 42;
(xi) an alanine at on 101 of SEQ ID NO: 42;
(xii) a serine at position 101 of SEQ ID NO: 42;
(xiii) a histidine at position 101 of SEQ ID NO: 42;
(xiv) a leucine at position 101 of SEQ ID NO: 42;
(xv) an aspartic acid at position 101 of SEQ ID NO: 42;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xvi) a tyrosine at position 101 of SEQ ID NO: 42;
(xvii) a glutamine at position 101 of SEQ ID NO: 42;
) a lysine at position 101 of SEQ ID NO: 42;
(xix) an alanine at position 102 of SEQ ID NO: 42;
(xx) a serine at position 102 of SEQ ID NO: 42;
(xxi) a histidine at position 102 of SEQ ID NO: 42;
(xxii) a leucine at position 102 of SEQ ID NO: 42;
(xxiii) a ne at position 102 of SEQ ID NO: 42;
(xxiV) a e at position 102 of SEQ ID NO: 42;
(xxv) a glutamine at position 102 of SEQ ID NO: 42;
(xxVi) a lysine at position 102 of SEQ ID NO: 42;
(xxVii) an alanine at on 103 of SEQ ID NO: 42;
(xxViii) a serine at position 103 of SEQ ID NO: 42;
(xxix) a histidine at position 103 of SEQ ID NO: 42;
(xxx) a leucine at position 103 of SEQ ID NO: 42;
(xxxi) an aspartic acid at position 103 of SEQ ID NO: 42;
(xxxii) a tyrosine at position 103 of SEQ ID NO: 42;
(xxxiii) a proline at position 103 of SEQ ID NO: 42;
(xxxiV) a ine at position 103 of SEQ ID NO: 42;
(xxxv) a lysine at position 103 of SEQ ID NO: 42;
(xxxvi) a serine at position 104 of SEQ ID NO: 42;
i) a ine at position 104 of SEQ ID NO: 42;
(xxxviii) a leucine at position 104 of SEQ ID NO: 42;
(xxxix) an aspartic acid at position 104 of SEQ ID NO: 42;
(xl) a tyrosine at position 104 of SEQ ID NO: 42;
(xli) a proline at position 104 of SEQ ID NO: 42;
(xlii) a glutamine at position 104 of SEQ ID NO: 42;
(xliii)a lysine at position 104 of SEQ ID NO: 42;
(xliV) an alanine at on 105 of SEQ ID NO: 42;
(le) a histidine at position 105 of SEQ ID NO: 42;
(lei) a leucine at position 105 of SEQ ID NO: 42;
(leii) an aspartic acid at position 105 of SEQ ID NO: 42;
(leiii)a tyrosine at position 105 of SEQ ID NO: 42;
(xlix) a proline at position 105 of SEQ ID NO: 42;
(l) a glutamine at position 105 of SEQ ID NO: 42;
(li) a lysine at position 105 of SEQ ID NO: 42;
(lii) an alanine at position 107 of SEQ ID NO: 42;
(liii) a serine at position 107 of SEQ ID NO: 42;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(liv) a histidine at position 107 of SEQ ID NO: 42;
(lv) a leucine at position 107 of SEQ ID NO: 42;
(lvi) an aspartic acid at position 107 of SEQ ID NO: 42;
(lvii) a tyrosine at position 107 of SEQ ID NO: 42;
(lviii) a proline at position 107 of SEQ ID NO: 42;
(lix) a glutamine at position 107 of SEQ ID NO: 42;
(lx) a lysine at position 107 of SEQ ID NO: 42;
(lxi) a ine at position 41 of SEQ ID NO: 42;
(lxii) a serine at position 47 of SEQ ID NO: 42;
(lxiii)a e at position 41, an alanine at position 72, an aspartic acid at position 73
and an arginine at position 74 and a ine at on 76 each relative to SEQ ID
NO: 42;
(lxiv) a proline at on 41, a leucine at position 51 and a glutamic acid at position
102 each relative to SEQ ID NO: 42;
(lxv) a proline at on 41, a leucine at position 51, a glutamic acid at position 102
and an alanine at position 105 each relative to SEQ ID NO: 42;
(lxvi) a proline at position 41, a leucine at position 51, an e at position 72, an
aspartic acid at on 73, an arginine at position 74, a threonine at position 76, a
glutamic acid at position 102 and an alanine at position 105; or
(b) a VL comprising a sequence set forth in SEQ ID NO: 46 and comprising one or
more of the following substitutions or groups of substitutions:
(i) a threonine at position 76 of SEQ ID NO: 46;
(ii) a threonine at position 23 of SEQ ID NO: 46;
(iii) an asparagine at position 28 of SEQ ID NO: 46;
(iv) a tyrosine at position 33 of SEQ ID NO: 46;
(v) an aspartic acid at position 34 of SEQ ID NO: 46;
(vi) an asparagine at position 53 of SEQ ID NO: 46;
(vii) a serine at position 54 of SEQ ID NO: 46;
(viii) an alanine at position 82 of SEQ ID NO: 46;
(ix) a serine at position 95 of SEQ ID NO: 46;
(x) a serine at position 96 of SEQ ID NO: 46;
(xi) a threonine at position 23, a serine at position 24 and a threonine at position 76
each relative to SEQ ID NO: 46;
(xii) a threonine at position 23 and a threonine at position 76 each ve to SEQ ID
NO: 46;
(xiii) a threonine at position 23, a serine at position 24, a threonine at position 76 and a
glutamic acid at on 51 each relative to SEQ ID NO: 46; or
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xiv) a threonine at position 23, a serine at position 24, a threonine at position 76 and a
glycine at position 51 each relative to SEQ ID NO: 46.
For example, the n binding domain is a VH sing three CDRs of an
amino acid sequence set forth in any one of SEQ ID NOs: 2, 10, 18, 26, 34, 42, 50, 58,
66, 70, 74, 78, 86, 90, 94, 137, 152, 154 to 162, 173, 175 to 187 or 234.
In one e, the CDRs are defined according to the Kabat numbering
system.
For example, the TLla-binding protein comprises a VH including CDRs as
follows:
(i) a CDRl comprising a sequence set forth in SEQ ID NO: 3, a CDR2 comprising
a sequence set forth in SEQ ID NO: 4 (wherein any one or more of the five inal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 5
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C336 in Figure 1A);
(ii) a CDRl comprising a sequence set forth in SEQ ID NO: 11, a CDR2 comprising
a sequence set forth in SEQ ID NO: 12 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are tuted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 13
(or sequences labeled as CDRs 1, 2 and 3 in bold text of dy C334 in Figure 1A);
(iii) a CDRl comprising a sequence set forth in SEQ ID NO: 19, a CDR2 comprising
a sequence set forth in SEQ ID NO: 20 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 21
(or ces d as CDRs 1, 2 and 3 in bold text of antibody C333 in Figure 1A);
(iv) a CDRl comprising a sequence set forth in SEQ ID NO: 27, a CDR2 comprising
a sequence set forth in SEQ ID NO: 28 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid ce are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 29
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C323 in Figure 1A);
(v) a CDRl comprising a ce set forth in SEQ ID NO: 35, a CDR2 comprising
a sequence set forth in SEQ ID NO: 36 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 37
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C321 in Figure 1A);
(vi) a CDRl comprising a ce set forth in SEQ ID NO: 43, a CDR2 comprising
a sequence set forth in SEQ ID NO: 44 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 45
(or sequences labeled as CDRs 1, 2 and 3 in bold text of dy C320 in Figure 1A);
(vii) a CDR1 comprising a sequence set forth in SEQ ID NO: 51, a CDR2 comprising
a sequence set forth in SEQ ID NO: 52 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 53
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C319 in Figure 1A);
(viii) a CDR1 comprising a ce set forth in SEQ ID NO: 67, a CDR2 comprising
a sequence set forth in SEQ ID NO: 68 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 69
(or ces labeled as CDRs 1, 2 and 3 in bold text of antibody C320-90 in Figure
1C);
(ix) a CDR1 sing a sequence set forth in SEQ ID NO: 71, a CDR2 comprising
a sequence set forth in SEQ ID NO: 72 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other lly-
ing amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 73
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C320-103 in Figure
1C);
(x) a CDR1 comprising a sequence set forth in SEQ ID NO: 75, a CDR2 comprising
a ce set forth in SEQ ID NO: 76 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 77
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C320-114 in Figure
1C);
(xi) a CDR1 comprising a sequence set forth in SEQ ID NO: 79, a CDR2 comprising
a sequence set forth in SEQ ID NO: 80 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
ing amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 81
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C320-115 in Figure
1C);
(xii) a CDR1 comprising a sequence set forth in SEQ ID NO: 87, a CDR2 comprising
a sequence set forth in SEQ ID NO: 88 in any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 89
(or ces labeled as CDRs 1, 2 and 3 in bold text of antibody C320-129 in Figure
1C);
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xiii) a CDR1 comprising a sequence set forth in SEQ ID NO: 91, a CDR2 comprising
a sequence set forth in SEQ ID NO: 92 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid ce are tuted with any other naturally-
ing amino acid) and a CDR3 comprising a sequence set forth in SEQ ID NO: 93
(or ces labeled as CDRs 1, 2 and 3 in bold text of antibody C320-130 in Figure
1C);
(xiv) a CDR1 comprising a sequence set forth in amino acids 31 to 35 of any one of
SEQ ID NOs: 175 to 187 a CDR2 comprising amino acids 50 to 66 of any one of SEQ
ID NOs: 175 to 187 (wherein any one or more of the five C-terminal amino acids of the
CDR2 amino acid sequence are substituted with any other naturally-occurring amino
acid) and amino acids 99 to 108 of any one of SEQ ID NOs: 175 to 187; and
(xv) a CDR1 comprising a sequence set forth in amino acids 26 to 35 of any one of
SEQ ID NOs: 175 to 187 a CDR2 comprising amino acids 50 to 66 of any one of SEQ
ID NOs: 175 to 187 (wherein any one or more of the five inal amino acids of the
CDR2 amino acid sequence are substituted with any other naturally-occurring amino
acid) and amino acids 99 to 108 of any one of SEQ ID NOs: 175 to 187.
For example, the TLla-binding protein comprises a VH including CDRs as
follows:
(i) a CDR1 comprising a sequence set forth in SEQ ID NO: 43, a CDR2 comprising
a sequence set forth in SEQ ID NO: 44 (wherein any one or more of the five C-terminal
amino acids of the CDR2 amino acid sequence are substituted with any other naturally-
occurring amino acid) and a CDR3 sing a sequence set forth in SEQ ID NO: 45
(or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C320 in Figure 1A);
(ii) a CDR1 comprising a sequence set forth in amino acids 31 to 35 of any one of
SEQ ID NOs: 175 to 181, 183 or 185 to 187, a CDR2 comprising amino acids 50 to 66
of any one of SEQ ID NOs: 175 to 181, 183 or 185 to 187 in any one or more of
the five C-terminal amino acids of the CDR2 amino acid sequence are substituted with
any other naturally-occurring amino acid) and amino acids 99 to 108 of any one of SEQ
ID NOs: 175 to 181, 183 or 185 to 187; or
(iii) a CDR1 comprising a sequence set forth in amino acids 26 to 35 of any one of
SEQ ID NOs: 175 to 181, 183 or 185 to 187, a CDR2 sing amino acids 50 to 66
of any one of SEQ ID NOs: 175 to 181, 183 or 185 to 187 (wherein any one or more of
the five C-terminal amino acids of the CDR2 amino acid sequence are substituted with
any other naturally-occurring amino acid) and amino acids 99 to 108 of any one of SEQ
ID NOs: 175 to 181, 183 or 185 to 187
In one example, the TLla—binding protein comprises a VH including CDRs as
follows:
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(i) a CDRl comprising a sequence set forth in SEQ ID NO: 43 (or sequence labeled
as CDR 1 in bold text of the sequence labeled “Consensus” in Figure 1E);
(ii) a CDR2 comprising a sequence WXlNPNSGNTGYAQKFQG (SEQ ID NO:
142), n X1 is methionine or leucine (or ce labeled as CDR 2 in bold text
of the sequence labeled “Consensus” in Figure 1E or Figure 9B); and
(iii) a CDR3 sing a ce EVPXlTAXzFEY (SEQ ID NO: 143), wherein
X1 is aspartic acid or ic acid and X2 is serine or alanine. (or sequence labeled as
CDR3 in bold text of the sequence labeled “Consensus” in Figure 1E or or Figure 9B)
or comprising a sequence EX1PX2X3AX4FX5Y (SEQ ID NO: 235), wherein:
X1 is an amino acid selected from the group consisting of valine, alanine, serine,
histidine, aspartic acid, leucine, tyrosine, proline, glutamine or lysine;
X2 is an amino acid selected from the group consisting of e, serine, histidine,
lysine, glutamic acid or aspartic acid;
X3 is an amino acid selected from the group consisting of alanine, serine, aspartic acid,
tyrosine or threonine;
X4 is an amino acid selected from the group consisting of serine, alanine, histidine,
leucine, aspartic acid or ne; and
X5 is an amino acid selected from the group consisting of alanine, serine, histidine,
leucine, aspartic acid, proline, ine, glutamic acid or lysine.
onal residues suitable for inclusion in CDR3 are described herein and are
to be taken to apply s mutandis to the present example of the disclosure.
In one example, the CDRs are defined according to the enhanced Chothia
ing system. For example, the TLla-binding protein ses a VH including
CDRs labeled as CDRs 1, 2 and 3 in underlined text of antibody 336, 334, 333, 323,
321, 320 or 319 in Figure 1A or of antibody C320-90, C320-103, C320-114, 15,
C320-129 or C320-130 in Figure 1C or of the sequence labeled “Consensus” in Figure
1C or Figure 1E or Figure 9B.
In one example, the TLla-binding protein additionally comprises the following:
(i) a heavy chain FR1 comprising an amino acid sequence set forth in SEQ ID NO:
144;
(ii) a heavy chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
145;
(iii) a heavy chain FR3 comprising an amino acid sequence set forth in SEQ ID NO:
146; and
(iv) a heavy chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
147.
In one example, the TLla-binding protein comprises the following:
[Annotation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(i) a heavy chain FR1 comprising an amino acid sequence set forth in SEQ ID NO:
144;
(ii) a heavy chain CDR1 comprising a sequence set forth in SEQ ID NO: 43;
(iii) a heavy chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
145;
(iv) a heavy chain CDR2 comprising a ce set forth in SEQ ID NO: 142;
(v) a heavy chain FR3 comprising an amino acid sequence set forth in SEQ ID NO:
146;
(vi) a heavy chain CDR3 comprising a ce set forth in SEQ ID NO: 143 or
235; and
(vii) a heavy chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
147.
For example, the antigen binding domain is a VL comprising three CDRs of an
amino acid sequence set forth in any one of SEQ ID NOs: 6, 14, 22, 30, 38, 46, 54, 62,
82, 95, 153, 163 to 172, 174, or 188 to 200. In one example, the CDRs are defined
according to the Kabat ing system. For example, the TLla-binding protein
comprises a VL ing CDRs as follows:
(i) a CDRl comprising a sequence set forth in SEQ ID NO: 7, a CDR2 comprising
a sequence set forth in SEQ ID NO: 8 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 9 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody C336
in Figure 1B);
(ii) a CDRl comprising a sequence set forth in SEQ ID NO: 15, a CDR2 comprising
a sequence set forth in SEQ ID NO: 16 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 17 (or sequences labeled as CDRs 1, 2 and 3 in bold text of dy
C334 in Figure 1B);
(iii) a CDRl comprising a sequence set forth in SEQ ID NO: 23, a CDR2 comprising
a sequence set forth in SEQ ID NO: 24 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 25 (or sequences d as CDRs 1, 2 and 3 in bold text of antibody
C333 in Figure 1B);
(iv) a CDRl comprising a sequence set forth in SEQ ID NO: 31, a CDR2 comprising
a ce set forth in SEQ ID NO: 32 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 33 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody
C323 in Figure 1B);
(v) a CDRl comprising a sequence set forth in SEQ ID NO: 39, a CDR2 comprising
a sequence set forth in SEQ ID NO: 40 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 41 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody
C321 in Figure 1B);
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(Vi) a CDRl comprising a ce set forth in SEQ ID NO: 47, a CDR2 comprising
a sequence set forth in SEQ ID NO: 48 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 49 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody
C320 in Figure 1B);
(Vii) a CDRl comprising a sequence set forth in SEQ ID NO: 55, a CDR2 comprising
a ce set forth in SEQ ID NO: 56 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 57 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody
C319 in Figure 1B);
(Viii) a CDRl comprising a sequence set forth in SEQ ID NO: 83, a CDR2 comprising
a ce set forth in SEQ ID NO: 84 and a CDR3 comprising a sequence set forth in
SEQ ID NO: 85 (or sequences labeled as CDRs 1, 2 and 3 in bold text of antibody
C320-120 in Figure 1F); or
(ix) a CDRl comprising amino acids 23 to 36 of any one of SEQ ID NOs: 188 to
200, a CDR2 comprising amino acids 52 to 58 of any one of SEQ ID NOs: 188 to 200
and a CDR3 comprising amino acids 91 to 100 of any one of SEQ ID NOs: 188 to 200.
In one example, the TLla-binding protein ses a VL including CDRs as
follows:
(i) a CDRl comprising a sequence X1X2SSSDIGAGLGVH (SEQ ID NO: 139),
wherein X1 is alanine or ine; X2 is glycine or serine (or sequence labeled as CDR
1 in bold text of the sequence labeled nsus” in Figure 9C);
(ii) a CDR2 comprising a sequence set forth in SEQ ID NO: 140; and
(iii) a CDR3 comprising a sequence set forth in SEQ ID NO: 141.
In one example, the TLla-binding protein additionally ses the following:
(i) a light chain FRl comprising an amino acid sequence set forth in SEQ ID NO:
148;
(ii) a light chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
149;
(iii) a light chain FR3 comprising an amino acid sequence set forth in SEQ ID NO:
150; and
(iV) a light chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
151.
In one example, the TLla-binding protein comprises the following:
(i) a light chain FRl comprising an amino acid sequence set forth in SEQ ID NO:
148;
(ii) a light chain CDRl comprising a sequence set forth in SEQ ID NO: 139;
(iii) a light chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
149;
(iV) a light chain CDR2 comprising a sequence set forth in SEQ ID NO: 140;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(V) a light chain FR3 comprising an amino acid sequence set forth in SEQ ID NO:
150;
(Vi) a light chain CDR3 comprising a sequence set forth in SEQ ID NO: 141; and
(Vii) a light chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
151.
In one example, the CDRs are d according to the ed Chothia
numbering system. For example, the TLla-binding protein comprises a VL including
CDRs labeled as CDRs 1, 2 and 3 in underlined text of antibody 336, 334, 333, 323,
321, 320 or 319 in Figure 1B or of antibody C320-120 in Figure 1F or of the sequence
labeled “Consensus” in Figure 1H and Figure 9.
In one example, the antigen binding domain comprises six CDRs of one of the
following pairs of variable regions:
(i) aVH comprising a sequence set forth in SEQ ID NO: 2 and a VL comprising a
sequence set forth in SEQ ID NO: 6;
(ii) a VH comprising a ce set forth in SEQ ID NO: 10 and a VL comprising a
sequence set forth in SEQ ID NO: 14;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 18 and a VL comprising a
sequence set forth in SEQ ID NO: 22;
(iV) a VH sing a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(V) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL sing a
ce set forth in SEQ ID NO:38;
(Vi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 50 and a VL comprising a
sequence set forth in SEQ ID NO: 54;
(Viii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
ce set forth in SEQ ID NO: 62;
(x) a VH comprising a sequence set forth in SEQ ID NO: 66 and a VL comprising a
ce set forth in SEQ ID NO: 62;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiii) a VH comprising a ce set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xiV) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 82;
(xV) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
ce set forth in SEQ ID NO: 46;
(xVi) a VH comprising a sequence set forth in SEQ ID NO: 90 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising
a sequence set forth in SEQ ID NO: 164;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL comprising a
sequence set forth in SEQ ID NO: 163;
(xx) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL sing a
sequence set forth in SEQ ID NO: 165;
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL sing a
sequence set forth in SEQ ID NO: 166;
(xxii) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 167;
(xxiii) a VH comprising a ce set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(xxiV) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL sing a
sequence set forth in SEQ ID NO: 169;
(xxv) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
(xxVi) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(xxVii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxViii) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(xxix) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxx) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(xxxi) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxii) a VH comprising a ce set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxxiii) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXiV) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXV) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXVi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 164;
(XXXVii) a VH comprising a ce set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 165;
(XXXViii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 166;
(xxxix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 167;
(X1) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(Xli) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(Xlii) a VH comprising a ce set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
)a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 171;
(XliV) a VH sing a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 172;
(XIV) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL sing a
sequence set forth in SEQ ID NO: 188;
(lei) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
ce set forth in SEQ ID NO: 189;
(leii) a VH comprising a ce set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(leiii)a VH sing a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(Xlix) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(1) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(1i) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(hi) a VH comprising a sequence set forth in SEQ ID NO: 182 and a VL comprising a
ce set forth in SEQ ID NO: 195;
(liii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
ce set forth in SEQ ID NO: 196;
(liV) a VH sing a sequence set forth in SEQ ID NO: 184 and a VL comprising a
sequence set forth in SEQ ID NO: 197;
(lV) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL sing a
sequence set forth in SEQ ID NO: 198;
(lVi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; or
(lVii) a VH sing a sequence set forth in SEQ ID NO: 187 and a VL sing a
ce set forth in SEQ ID NO: 200.
In one example, the antigen binding domain comprises six CDRs of an dy
comprising a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 46, wherein the VH and/or VL comprise
one or more of the following substitutions or groups of substitutions:
(i) the VH comprises an alanine at position 16 of SEQ ID NO: 42;
(ii) the VH comprises an alanine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iii) the VH comprises a serine at position 100 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(iV) the VH comprises a histidine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(V) the VH comprises a leucine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Vi) the VH comprises an aspartic acid at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Vii) the VH comprises a tyrosine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Viii) the VH comprises a proline at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(ix) the VH comprises a glutamine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(x) the VH ses a lysine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xi) the VH comprises an alanine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xii) the VH comprises a serine at on 101 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xiii) the VH comprises a histidine at on 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xiV) the VH comprises a leucine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xV) the VH comprises an aspartic acid at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xVi) the VH comprises a tyrosine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvii) the VH comprises a glutamine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises a lysine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xix) the VH comprises an alanine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xx) the VH ses a serine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxi) the VH comprises a histidine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxii) the VH comprises a leucine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiii) the VH comprises a tyrosine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiV) the VH comprises a proline at position 102 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxv) the VH comprises a glutamine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxvi) the VH ses a lysine at position 102 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxVii) the VH comprises an alanine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xxviii) the VH ses a serine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxix) the VH ses a histidine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxx) the VH comprises a leucine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxxi) the VH comprises an aspartic acid at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXii)the VH comprises a tyrosine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxiii) the VH comprises a proline at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiV) the VH comprises a ine at on 103 of SEQ ID NO: 42 and the
VL comprises a ine at position 76 of SEQ ID NO: 46;
(XXXV) the VH comprises a lysine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises a serine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVii) the VH ses a histidine at position 104 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(XXXViii) the VH ses a leucine at on 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiX) the VH comprises an aspartic acid at position 104 of SEQ ID NO: 42 and
the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(X1) the VH comprises a tyrosine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xli) the VH comprises a proline at position 104 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(Xlii) the VH comprises a glutamine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(Xliii) the VH comprises a lysine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XliV) the VH comprises an alanine at position 105 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(le) the VH comprises a histidine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVi) the VH comprises a leucine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVii) the VH comprises an aspartic acid at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlViii)the VH comprises a tyrosine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlix) the VH comprises a proline at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(l) the VH comprises a glutamine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(li) the VH comprises a lysine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(hi) the VH ses an alanine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liii) the VH comprises a serine at position 107 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(liV) the VH comprises a histidine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1V) the VH comprises a leucine at on 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVi) the VH comprises an aspartic acid at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVii) the VH comprises a tyrosine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
)the VH comprises a proline at on 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lix) the VH comprises a glutamine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1X) the VH comprises a lysine at position 107 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(lxi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 23 of SEQ ID NO: 46;
(lxii) the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 28 of SEQ ID NO: 46;
(lxiii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a tyrosine at position 33 of SEQ ID NO: 46;
(lXiV) the VH comprises a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 34 of SEQ ID NO: 46;
(lXV) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an asparagine at position 53 of SEQ ID NO: 46;
(lXVi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 54 of SEQ ID NO: 46;
(lXVii) the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 82 of SEQ ID NO: 46;
(lXViii)the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
ses a serine at position 95 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(lxix) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 96 of SEQ ID NO: 46;
(lXX) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(lxxi) the VH ses a serine at position 47 of SEQ ID NO: 42 and the VL comprises
a threonine at position 23 of SEQ ID NO: 46;
(lxxii) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 and an arginine at position 74 and a ine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at on 76 of SEQ ID
NO: 46;
(lxxiii) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each ve to SEQ ID NO: 42 and the VL comprises a serine at
position 24 and a threonine at position 76 each ve to SEQ ID NO: 46;
(lXXiv) the VH comprises a e at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL ses a threonine
at position 23, a serine at position 24 and a threonine at position 76 each ve to
SEQ ID NO: 46;
(lxxv) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lxxvi) the VH ses a e at position 41, a leucine at position 51 and a glutamic
acid at on 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 76 of SEQ ID NO: 46;
(lxxvii) the VH comprises a proline at position 41, a e at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 23, a serine at position 24 and a
threonine at position 76 each relative to SEQ ID NO: 46;
(lxxviii) the VH comprises a proline at position 41, a leucine at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXiX) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24 and a threonine at position 76 each ve to SEQ ID NO: 46;
(1)000 the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at on 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
position 24, a threonine at position 76 and a glutamic acid at position 51 each relative
to SEQ ID NO: 46;
(lxxxi) the VH ses a proline at position 41, a leucine at position 51, an alanine at
position 72, an aspartic acid at position 73, an arginine at position 74, a threonine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL comprises a ine at position 23, a serine at position
24, a ine at position 76 and a glutamic acid at position 51 each relative to SEQ
ID NO: 46; or
(lxxxii) the VH comprises a proline at position 41, a e at position 51, an
alanine at position 72, an aspartic acid at position 73, an arginine at position 74, a
threonine at position 76, a glutamic acid at position 102 and an alanine at position 105
each relative to SEQ ID NO: 42 and the VL ses a ine at position 23, a
serine at position 24, a threonine at on 76 and a glycine at position 51 each
ve to SEQ ID NO: 46.
In one example, the antigen binding domain comprises six CDRs of one of the
following pairs of variable regions:
(i) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 106 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 107 or a c acid that izes o under moderate to high
stringency conditions;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL sing a
sequence set forth in SEQ ID NO: 188;
(iv) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 222 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a nucleic acid that hybridizes o under moderate to high
stringency conditions;
(v) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(vi) a VH d by a nucleic acid comprising a sequence at least about 95%
cal to the sequence set forth in SEQ ID NO: 223 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
SEQ ID NO: 228 or a nucleic acid that izes thereto under moderate to high
stringency conditions;
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(Viii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
o under moderate to high stringency conditions and a VL encoded by a nucleic
acid sing a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 229 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(ix) a VH sing a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(x) a VH encoded by a nucleic acid comprising a ce at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high ency conditions and a VL d by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a c acid that hybridizes thereto under te to high
stringency conditions;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(xii) a VH encoded by a nucleic acid sing a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a c
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 231 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(xiV) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
o under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xv) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(xvi) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the ce set forth in SEQ ID NO: 225 or a nucleic acid that hybridizes
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
thereto under moderate to high stringency conditions and a VL d by a nucleic
acid sing a sequence at least about 95% identical to the ce set forth in
SEQ ID NO: 230 or a nucleic acid that izes thereto under moderate to high
stringency conditions;
(xVii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL sing a
sequence set forth in SEQ ID NO: 196;
(xViii) a VH encoded by a nucleic acid comprising a ce at least about 95%
identical to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that izes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(xx) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that izes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 232 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; and
(xxii) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% cal to the sequence set forth in
SEQ ID NO: 232 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xxiii) a VH comprising a ce set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200; or
(xxiV) a VH encoded by a c acid comprising a ce at least about 95%
identical to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that izes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 233 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions.
In one example, the TLla-binding protein comprises the following six CDRs:
ation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(i) a heavy chain CDRl comprising a sequence set forth in SEQ ID NO: 43 (or
sequence labeled as CDR 1 in bold text of the sequence labeled “Consensus” in Figure
1E);
(ii) a heavy chain CDR2 comprising a sequence WXlNPNSGNTGYAQKFQG
(SEQ ID NO: 142), wherein X1 is methionine or leucine (or sequence labeled as CDR 2
in bold text of the sequence d “Consensus” in Figure 1E);
(iii) a heavy chain CDR3 comprising a sequence EVPXlTAX2FEY (SEQ ID NO:
143), wherein X1 is aspartic acid or glutamic acid and X2 is serine or alanine. (or the
sequence labeled as CDR 3 in bold text of the sequence labeled “Consensus” in Figure
9B) or a sequence EX1PX2X3AX4FX5Y (SEQ ID NO: 235), wherein:
X1 is an amino acid selected from the group consisting of valine, e, serine,
histidine, aspartic acid, leucine, tyrosine, proline, ine or lysine;
X2 is an amino acid selected from the group consisting of alanine, serine, histidine,
, glutamic acid or aspartic acid;
X3 is an amino acid selected from the group ting of alanine, serine, aspartic acid,
tyrosine or threonine;
X4 is an amino acid selected from the group consisting of serine, e, histidine,
leucine, aspartic acid or tyrosine; and
X5 is an amino acid ed from the group consisting of alanine, serine, histidine,
leucine, aspartic acid, proline, ine, glutamic acid or lysine.;
(iv) a CDRl comprising a sequence SDIGAGLGVH (SEQ ID NO: 139),
wherein X1 is alanine or threonine; X2 is glycine or serine (or sequence labeled as CDR
1 in bold text of the sequence labeled “Consensus” in Figure 9C);
(v) a CDR2 comprising a sequence set forth in SEQ ID NO: 48; and
(vi) a CDR3 sing a sequence set forth in SEQ ID NO: 49
In one example, the TLla-binding protein comprises the following:
(a) a VH comprising:
(i) a heavy chain FRl comprising an amino acid sequence set forth in SEQ ID NO:
144;
(ii) a heavy chain CDRl comprising a sequence set forth in SEQ ID NO: 43;
(iii) a heavy chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
145;
(iv) a heavy chain CDR2 comprising a sequence set forth in SEQ ID NO: 142;
(v) a heavy chain FR3 comprising an amino acid sequence set forth in SEQ ID NO:
146;
(vi) a heavy chain CDR3 comprising a sequence set forth in SEQ ID NO: 143 or
235; and
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(vii) a heavy chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
147; and
(b) a VL comprising:
(i) a light chain FRl comprising an amino acid sequence set forth in SEQ ID NO:
148;
(ii) a light chain CDR1 comprising a sequence set forth in SEQ ID NO: 139;
(iii) a light chain FR2 comprising an amino acid sequence set forth in SEQ ID NO:
149;
(iv) a light chain CDR2 comprising a sequence set forth in SEQ ID NO: 48;
(V) a light chain FR3 comprising an amino acid ce set forth in SEQ ID NO:
150;
(vi) a light chain CDR3 sing a ce set forth in SEQ ID NO: 49; and
(vii) a light chain FR4 comprising an amino acid sequence set forth in SEQ ID NO:
151.
Additional residues suitable for inclusion in heavy chain CDR3 are described
herein and are to be taken to apply mutatis mutandis to the present example of the
disclosure.
In one example, the CDRs are defined according to the Kabat numbering
system. Exemplary CDRs defined according to the Kabat numbering system are
bed above and/or in Figures 1A to 1H, 9B or 9C labeled as CDRs 1 to 3 in bold
text and are taken to apply mutatis mutandis to the present example of the disclosure.
In one example, the CDRs are defined according to the ed a
numbering system. Exemplary CDRs defined according to the enhanced Chothia
numbering system are described above and/or in Figures 1A to 1H labeled as CDRs 1
to 3 in underlined text and are taken to apply mutatis mutandis to the present example
of the disclosure.
In one e, the TLla-binding protein ses a variable region of the
antibody.
In one example, the TLla-binding protein comprises a VH sing a
sequence set forth in any one of SEQ ID NOs: 2, 10, 18, 26, 34, 42, 50, 58, 66, 70, 74,
78, 86, 90, 94, 137, 152, 154 to 162, 173, 175 to 187 or 234 or a sequence having at
least about 80% identity to any one of the foregoing. In one example, the VH comprises
a sequence set forth in any one of SEQ ID NOs: 26, 34, 42 or 94 or a sequence having
at least about 80% identity to any one of the foregoing. In one example, the VH
comprises a sequence set forth in any one of SEQ ID NOs: 42, 175 to 181, 183 or 185
to 187 or a sequence having at least about 80% identity to any one of the foregoing.
In one example, the TLla-binding protein comprises a VH sing a
sequence set forth in SEQ ID NO: 94, 137, 152, 162 or 173. In one example, the VH
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
comprises a sequence set forth in any one of SEQ ID NOs: 42, 58, 66, 70, 74, 78, 86 or
90. In one e, the VH ses a sequence set forth in SEQ ID NO: 42.
In one example, the TLla-binding protein comprises a VH comprising a
sequence set forth in SEQ ID NO: 42 and comprising one or more of the following
substitutions or groups of substitutions:
(i) an alanine at position 16 of SEQ ID NO: 42;
(ii) an alanine at position 100 of SEQ ID NO: 42;
(iii) a serine at position 100 of SEQ ID NO: 42;
(iV) a histidine at on 100 of SEQ ID NO: 42;
(V) a leucine at position 100 of SEQ ID NO: 42;
(Vi) an ic acid at position 100 of SEQ ID NO: 42;
(Vii) a tyrosine at position 100 of SEQ ID NO: 42;
(Viii) a proline at on 100 of SEQ ID NO: 42;
(ix) a glutamine at position 100 of SEQ ID NO: 42;
(x) a lysine at position 100 of SEQ ID NO: 42;
(xi) an alanine at position 101 of SEQ ID NO: 42;
(xii) a serine at on 101 of SEQ ID NO: 42;
(xiii) a histidine at position 101 of SEQ ID NO: 42;
(xiV) a leucine at position 101 of SEQ ID NO: 42;
(xV) an aspartic acid at position 101 of SEQ ID NO: 42;
(xVi) a tyrosine at position 101 of SEQ ID NO: 42;
(xvii) a ine at position 101 of SEQ ID NO: 42;
(xViii) a lysine at position 101 of SEQ ID NO: 42;
(xix) an alanine at position 102 of SEQ ID NO: 42;
(xx) a serine at position 102 of SEQ ID NO: 42;
(xxi) a histidine at position 102 of SEQ ID NO: 42;
(xxii) a leucine at position 102 of SEQ ID NO: 42;
(xxiii) a tyrosine at position 102 of SEQ ID NO: 42;
(xxiV) a proline at position 102 of SEQ ID NO: 42;
(xxv) a glutamine at position 102 of SEQ ID NO: 42;
(xxVi) a lysine at position 102 of SEQ ID NO: 42;
(xxVii) an alanine at position 103 of SEQ ID NO: 42;
(xxViii) a serine at position 103 of SEQ ID NO: 42;
(xxix) a histidine at position 103 of SEQ ID NO: 42;
(xxx) a leucine at position 103 of SEQ ID NO: 42;
(xxxi) an aspartic acid at position 103 of SEQ ID NO: 42;
) a tyrosine at position 103 of SEQ ID NO: 42;
(xxxiii) a proline at position 103 of SEQ ID NO: 42;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxxiv) a ine at position 103 of SEQ ID NO: 42;
(xxxv) a lysine at position 103 of SEQ ID NO: 42;
(xxxvi) a serine at position 104 of SEQ ID NO: 42;
(xxxvii) a histidine at on 104 of SEQ ID NO: 42;
(xxxviii) a leucine at position 104 of SEQ ID NO: 42;
(XXXiX) an aspartic acid at position 104 of SEQ ID NO: 42;
(X1) a tyrosine at position 104 of SEQ ID NO: 42;
(Xli) a proline at on 104 of SEQ ID NO: 42;
(Xlii) a glutamine at position 104 of SEQ ID NO: 42;
(Xliii)a lysine at position 104 of SEQ ID NO: 42;
(Xliv) an alanine at position 105 of SEQ ID NO: 42;
(le) a histidine at position 105 of SEQ ID NO: 42;
(lei) a leucine at position 105 of SEQ ID NO: 42;
(leii) an aspartic acid at position 105 of SEQ ID NO: 42;
(leiii)a ne at position 105 of SEQ ID NO: 42;
(Xlix) a proline at position 105 of SEQ ID NO: 42;
(l) a glutamine at position 105 of SEQ ID NO: 42;
(li) a lysine at position 105 of SEQ ID NO: 42;
(hi) an alanine at position 107 of SEQ ID NO: 42;
(liii) a serine at position 107 of SEQ ID NO: 42;
(liv) a histidine at position 107 of SEQ ID NO: 42;
(IV) a leucine at position 107 of SEQ ID NO: 42;
(lvi) an aspartic acid at position 107 of SEQ ID NO: 42;
(lvii) a tyrosine at position 107 of SEQ ID NO: 42;
(lviii) a proline at position 107 of SEQ ID NO: 42;
(lix) a ine at position 107 of SEQ ID NO: 42;
(1X) a lysine at position 107 of SEQ ID NO: 42;
(lxi) a threonine at position 41 of SEQ ID NO: 42;
(lxii) a serine at position 47 of SEQ ID NO: 42;
(lxiii)a e at position 41, an alanine at position 72, a aspartic acid at position 73 an
ne at position 74 and a threonine at position 76 each relative to SEQ ID NO: 42;
(lxiv) a proline at position 41, a leucine at position 51 and a ic acid at position
102 each relative to SEQ ID NO: 42;
(lxv) a proline at position 41, a leucine at position 51, a glutamic acid at position 102
and an alanine at position 105 each relative to SEQ ID NO: 42;
(lxvi)a proline at on 41, a e at position 51, an alanine at position 72, a
aspartic acid at position 73, an arginine at position 74, a threonine at position 76 a
glutamic acid at position 102 and an alanine at position 105; or
[Annotation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(lxvii) a sequence having at least about 80% ty to any one of the foregoing.
In one example, the TLla-binding protein comprises a VH encoded by a nucleic
acid comprising a sequence set forth in any one of SEQ ID NOs: 96, 98, 100, 102, 104,
106, 108, 110, 112, 113, 114, 115, 117, 118 or 222 to 227 or a sequence at least about
80% cal thereto or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions.
In one example, the TLla-binding protein comprises a VH encoded by a c
acid comprising a sequence set forth in SEQ ID NO: 106 or 222 to 227 or a sequence at
least about 80% cal thereto or a nucleic acid that hybridizes thereto under
moderate to high stringency conditions.
In one example, the TLla-binding protein comprises a VL sing a
sequence set forth in any one of SEQ ID NOs: 6, 14, 22, 30, 38, 46, 54, 62, 82, 95, 138,
153, 163 or 174, or a sequence having at least about 80% identity to any one of the
foregoing. In one example, the VL comprises a sequence set forth in any one of SEQ
ID NOs: 30, 38, 46, 188 to 194, 196 or 198 to 200 or a sequence having at least about
80% ty to any one of the ing.
In one example, the TLla-binding protein comprises a VL comprising a
ce set forth in SEQ ID NO: 95, 138, 153, 163 or 174. In one example, the TLla-
binding protein comprises a VL comprising a sequence set forth in any one of SEQ ID
NOs: 46, 62 or 82. In one example, the inding protein comprises a VL
comprising a sequence set forth in SEQ ID NO: 46.
In one example, the TLla-binding protein comprises a VL comprising a
sequence set forth in SEQ ID NO: 46 and comprising one or more of the following
tutions or groups of substitutions:
(i) a threonine at position 76 of SEQ ID NO: 46;
(ii) an threonine at position 23 of SEQ ID NO: 46;
(iii) an asparagine at position 28 of SEQ ID NO: 46;
(iv) a tyrosine at position 33 of SEQ ID NO: 46;
(V) an aspartic acid at position 34 of SEQ ID NO: 46;
(vi) an asparagine at position 53 of SEQ ID NO: 46;
(vii) a serine at position 54 of SEQ ID NO: 46;
(viii) an alanine at position 82 of SEQ ID NO: 46;
(ix) a serine at position 95 of SEQ ID NO: 46;
(x) a serine at position 96 of SEQ ID NO: 46;
(xi) a threonine at position 23, a serine at position 24 and a threonine at position 76
each relative to SEQ ID NO: 46;
(xii) a threonine at position 23 and a threonine at position 76 each relative to SEQ ID
NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xiii) a threonine at position 23, a serine at position 24, a threonine at position 76 and a
glutamic acid at position 51 each relative to SEQ ID NO: 46;
(xiv) a threonine at position 23, a serine at position 24, a threonine at position 76 and a
glycine at position 51 each relative to SEQ ID NO: 46; or
(xv) a ce having at least about 80% identity to any one of the foregoing.
In one example, the TL1a-binding protein comprises a VL encoded by a nucleic
acid comprising a sequence set forth in any one of SEQ ID NOs: 97, 99, 101, 103, 105,
107, 109, 111, 116 or 228 to 233 or a sequence at least about 80% identical o or a
c acid that hybridizes thereto under moderate to high stringency conditions.
In one example, the protein comprises a VL encoded by a nucleic acid
comprising a sequence set forth in SEQ ID NO: 107 or 228 to 233 or a sequence at
least about 80% cal thereto or a nucleic acid that hybridizes thereto under
moderate to high stringency conditions.
In one example, the TL1a-binding protein is a domain dy, optionally
linked to a heavy chain constant region or a PC or a heavy chain constant domain (CH) 2
and/or CH3 or a protein that binds to an immune or cell.
In one example, a TLla-binding protein of the t sure comprises at
least a VH and a VL, wherein the VH and VL bind to form a Fv comprising the antigen
binding domain. For example, the TLla-binding protein comprises any one of the
ing pairs of VH and VL:
(i) aVH comprising a sequence set forth in SEQ ID NO: 2 and a VL comprising a
sequence set forth in SEQ ID NO: 6;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 10 and a VL comprising a
sequence set forth in SEQ ID NO: 14;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 18 and a VL comprising a
sequence set forth in SEQ ID NO: 22;
(iv) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(v) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
ce set forth in SEQ ID NO:38;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(vii) a VH comprising a sequence set forth in SEQ ID NO: 50 and a VL comprising a
sequence set forth in SEQ ID NO: 54;
(viii) a VH sing a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(x) a VH comprising a ce set forth in SEQ ID NO: 66 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiii) a VH sing a sequence set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiV) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 82;
(xV) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
ce set forth in SEQ ID NO: 46;
(xVi) a VH comprising a ce set forth in SEQ ID NO: 90 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvii) a VH sing a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xViii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL sing
a sequence set forth in SEQ ID NO: 164;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL comprising a
sequence set forth in SEQ ID NO: 163;
(xx) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 165;
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 166;
(xxii) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 167;
(xxiii) a VH comprising a ce set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(xxiV) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(xxv) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
(xxvi) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL sing a
sequence set forth in SEQ ID NO: 169;
(xxVii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxViii) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxix) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXX) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxi) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(xxxiii) a VH comprising a ce set forth in SEQ ID NO: 160 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXiV) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXV) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXVi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 164;
(XXXVii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
sing a ce set forth in SEQ ID NO: 165;
(XXXViii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 166;
(XXXiX) a VH sing a ce set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 167;
(X1) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(Xli) a VH sing a ce set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(Xlii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
ce set forth in SEQ ID NO: 170;
(Xliii)a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 171;
(XliV) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 172;
(XIV) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(lei) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(XIVii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
[Annotation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(XlViii)a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(Xlix) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(l) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
ce set forth in SEQ ID NO: 193;
(li) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
ce set forth in SEQ ID NO: 194;
(hi) a VH comprising a sequence set forth in SEQ ID NO: 182 and a VL comprising a
sequence set forth in SEQ ID NO: 195;
(liii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(liV) a VH comprising a sequence set forth in SEQ ID NO: 184 and a VL comprising a
sequence set forth in SEQ ID NO: 197;
(IV) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(lVi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; or
(lVii) a VH comprising a ce set forth in SEQ ID NO: 187 and a VL sing a
sequence set forth in SEQ ID NO: 200.
In one example, the TLla-binding protein comprises any one of the following
pairs of VH and VL:
(i) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(ii) a VH comprising a ce set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID NO:38;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(iv) a VH sing a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(V) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(Vi) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(Viii) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(ix) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
ce set forth in SEQ ID NO: 193;
(x) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
ce set forth in SEQ ID NO: 196;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
ce set forth in SEQ ID NO: 199; or
(xiV) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200;
In one example, the TLla-binding n comprises a VH comprising a
ce set forth in SEQ ID NO: 94 and a VL comprising a sequence set forth in SEQ
ID NO: 95.
In one example, the TLla-binding protein comprises a VH sing a
sequence set forth in SEQ ID NO: 137 and a VL sing a sequence set forth in
SEQ ID NO: 138.
In one example, the TLla-binding protein comprises a VH comprising a
sequence set forth in SEQ ID NO: 152 and a VL comprising a sequence set forth in
SEQ ID NO: 153.
In one example, the TLla-binding protein comprises a VH comprising a
sequence set forth in SEQ ID NO: 173 and a VL comprising a sequence set forth in
SEQ ID NO: 174.
In one example, the TLla-binding protein comprises any one of the following
pairs of VH and VL:
(i) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 66 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(iV) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(V) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(Vi) a VH sing a sequence set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 82;
(Viii) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH sing a ce set forth in SEQ ID NO: 90 and a VL sing a
sequence set forth in SEQ ID NO: 46; or
(x) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62.
For example, the TLla-binding protein comprises a VH comprising a sequence
set forth in SEQ ID NO: 42 and a VL comprising a sequence set forth in SEQ ID NO:
46, wherein the VH and/or VL comprise one or more of the ing tutions or
groups of substitutions:
(i) the VH comprises an alanine at position 16 of SEQ ID NO: 42;
(ii) the VH comprises an alanine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iii) the VH comprises a serine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iV) the VH comprises a histidine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(V) the VH comprises a leucine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Vi) the VH comprises an aspartic acid at on 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Vii) the VH comprises a tyrosine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Viii) the VH comprises a proline at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(ix) the VH comprises a glutamine at position 100 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(x) the VH comprises a lysine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xi) the VH comprises an e at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xii) the VH ses a serine at position 101 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xiii) the VH comprises a histidine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
(xiV) the VH comprises a leucine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xV) the VH comprises an ic acid at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xVi) the VH comprises a tyrosine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvii) the VH comprises a glutamine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises a lysine at position 101 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xix) the VH comprises an alanine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xx) the VH comprises a serine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxi) the VH comprises a histidine at position 102 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xxii) the VH comprises a leucine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiii) the VH comprises a tyrosine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiV) the VH comprises a e at position 102 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xxv) the VH comprises a glutamine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxVi) the VH comprises a lysine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxVii) the VH comprises an alanine at position 103 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxviii) the VH comprises a serine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxix) the VH comprises a histidine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxx) the VH comprises a leucine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxi) the VH comprises an ic acid at position 103 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises a tyrosine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxxiii) the VH comprises a proline at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiV) the VH comprises a glutamine at position 103 of SEQ ID NO: 42 and the
VL comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXV) the VH comprises a lysine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVi) the VH comprises a serine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
i) the VH comprises a histidine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXViii) the VH comprises a leucine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxix) the VH comprises an aspartic acid at position 104 of SEQ ID NO: 42 and
the VL ses a threonine at position 76 of SEQ ID NO: 46;
(X1) the VH comprises a tyrosine at position 104 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(Xli) the VH comprises a e at position 104 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(Xlii) the VH comprises a glutamine at position 104 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(Xliii) the VH comprises a lysine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XliV) the VH comprises an alanine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(le) the VH comprises a histidine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVi) the VH comprises a leucine at on 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVii) the VH comprises an aspartic acid at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
i)the VH comprises a tyrosine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(Xlix) the VH ses a proline at on 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(l) the VH comprises a glutamine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(li) the VH comprises a lysine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(hi) the VH comprises an alanine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liii) the VH comprises a serine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liV) the VH comprises a ine at position 107 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(1V) the VH comprises a e at on 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVi) the VH comprises an ic acid at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVii) the VH comprises a tyrosine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(1Viii)the VH comprises a proline at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lix) the VH comprises a glutamine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1X) the VH comprises a lysine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lxi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 23 of SEQ ID NO: 46;
(lxii) the VH ses a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 28 of SEQ ID NO: 46;
(lxiii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a tyrosine at position 33 of SEQ ID NO: 46;
(lXiV) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 34 of SEQ ID NO: 46;
(lXV) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an asparagine at position 53 of SEQ ID NO: 46;
(lXVi) the VH comprises a ine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 54 of SEQ ID NO: 46;
(lXVii) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a alanine at position 82 of SEQ ID NO: 46;
(lXViii)the VH comprises a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 95 of SEQ ID NO: 46;
(lxix) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 96 of SEQ ID NO: 46;
(lXX) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(lxxi) the VH comprises a serine at position 47 of SEQ ID NO: 42 and the VL comprises
an threonine at position 23 of SEQ ID NO: 46;
(lxxii) the VH comprises a proline at position 41, an alanine at position 72, an ic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 76 of SEQ ID
NO: 46;
(lxxiii) the VH ses a proline at on 41, a leucine at position 51 and a glutamic
acid at on 102 each relative to SEQ ID NO: 42 and the VL comprises a serine at
position 24 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lXXiv) the VH comprises a proline at on 41, a leucine at position 51 and a glutamic
acid at position 102 each ve to SEQ ID NO: 42 and the VL comprises a threonine
at position 23, a serine at position 24 and a threonine at position 76 each relative to
SEQ ID NO: 46;
(lxxv) the VH comprises a proline at on 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23 and a threonine at on 76 each relative to SEQ ID NO: 46;
(lxxvi) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each ve to SEQ ID NO: 42 and the VL comprises a threonine
at position 76 of SEQ ID NO: 46;
(lxxvii) the VH comprises a proline at position 41, a leucine at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 23, a serine at position 24 and a
threonine at position 76 each relative to SEQ ID NO: 46;
(lxxviii) the VH comprises a proline at position 41, a leucine at position 51, a
glutamic acid at position 102 and an alanine at position 105 each ve to SEQ ID
NO: 42 and the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXiX) the VH comprises a e at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24 and a threonine at position 76 each ve to SEQ ID NO: 46;
(1)000 the VH comprises a proline at position 41, an e at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL ses a threonine at position 23, a serine at
position 24, a threonine at position 76 and a ic acid at position 51 each relative
to SEQ ID NO: 46;
(lxxxi) the VH comprises a proline at position 41, a leucine at position 51, an alanine at
position 72, an aspartic acid at position 73, an ne at position 74, a threonine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at position
24, a threonine at position 76 and a ic acid at on 51 each relative to SEQ
ID NO: 46; or
(i) the VH comprises a proline at position 41, a leucine at position 51, an alanine at
position 72, an aspartic acid at position 73, an ne at position 74, a threonine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each ve
to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at position
24, a threonine at position 76 and a glycine at position 51 each relative to SEQ ID NO:
In one example, the VH and the VL are in a single polypeptide chain. For
example, the TL1a-binding protein is:
(i) a single chain Fv fragment (scFv);
(ii) a dimeric scFv (di-scFv);
(iii) one of (i) or (ii) linked to a heavy chain constant region or a Fc or a heavy chain
constant domain (CH) 2 and/or CH3; or
(iv) one of (i) or (ii) linked to a protein that binds to an immune effector cell.
In another example, the VL and VH are in separate polypeptide chains. For
example, the TL1a-binding n is:
(i) a y;
(ii) a triabody;
(iii) a tetrabody;
(iv) a Fab;
(v) a 2;
(vi) a Fv;
(vii) one of (i) to (vi) linked to a heavy chain constant region or a Fc or a heavy chain
constant domain (CH) 2 and/or CH3; or
(viii) one of (i) to (vi) linked to a protein that binds to an immune or cell.
In an exemplary form of the present disclosure, the TL1a-binding protein is an
antibody.
Exemplary TL1a-binding proteins of the t disclosure are chimeric, deimmunized
, humanized, human, synhumanized or primatized.
In one example, the disclosure es an antibody that specifically binds to
TL1a, the antibody comprising a heavy chain variable region (VH) and a light chain
variable region (VL), wherein the VL comprises the following complementary
determining regions (CDRs):
(i) a light chain CDR1 comprising the sequence RASQSITNNLA optionally
comprising four or fewer amino acid substitutions;
(ii) a light chain CDR2 sing the sequence DASTRAT optionally comprising
an amino acid substitution;
(iii) a light chain CDR3 comprising the sequence QQYNNWPLT optionally
comprising three or fewer amino acid substitutions.
In one e, the disclosure provides an dy that ically binds to
TL1a, the antibody comprising a heavy chain variable region (VH) and a light chain
variable region (VL), wherein the VL comprises the following complementary
determining regions (CDRs):
(i) a light chain CDR1 comprising the sequence RASQSX1X2X3X4LA, wherein X1
is isoleucine or a vative substitution thereof, X2 is serine or threonine, X3 is
asparagine, aspartic acid or serine and X4 is asparagine or tyrosine;
(ii) a light chain CDR2 comprising the sequence DASX1RAT, wherein X1 is
asparagine or threonine; and
(iii) a light chain CDR3 comprising the sequence QQX1X2NWPX3T, wherein X1 is
any amino acid, X2 is asparagine, aspartic acid or serine, and X3 is any amino acid.
In one example, the disclosure provides an antibody that specifically binds to
TL1a, the antibody sing a heavy chain variable region (VH) and a light chain
le region (VL), wherein the VH comprises a CDR1 sing amino acid
residues 26-35 of SEQ ID NO: 34 optionally comprising two or fewer amino acid
tutions and a CDR2 comprising residues 50-66 of SEQ ID NO: 34 optionally
comprising four or fewer amino acid substitutions.
In one example, the disclosure provides an antibody comprising an antigen
binding domain, wherein the antigen binding domain specifically binds to TL1a and,
wherein the antibody inhibits interaction of TL1a and DR3 and does not inhibit
interaction of TL1a and DcR3, the antigen binding domain comprising any one of:
(i) a VH comprising a sequence set forth in SEQ ID NO: 2 and a VL comprising a
sequence set forth in SEQ ID NO: 6;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(ii) a VH comprising a sequence set forth in SEQ ID NO: 10 and a VL comprising a
ce set forth in SEQ ID NO: 14;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 18 and a VL sing a
sequence set forth in SEQ ID NO: 22;
(iv) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(V) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID NO:38;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(vii) a VH comprising a ce set forth in SEQ ID NO: 50 and a VL comprising a
sequence set forth in SEQ ID NO: 54;
(viii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
ce set forth in SEQ ID NO: 62;
(X) a VH comprising a sequence set forth in SEQ ID NO: 66 and a VL sing a
sequence set forth in SEQ ID NO: 62;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiii) a VH comprising a ce set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiv) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL sing a
sequence set forth in SEQ ID NO: 82;
(xv) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvi) a VH comprising a sequence set forth in SEQ ID NO: 90 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xviii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising
a sequence set forth in SEQ ID NO: 164;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL comprising a
ce set forth in SEQ ID NO: 163;
(xx) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 165;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 166;
(xxii) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 167;
(xxiii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL comprising a
ce set forth in SEQ ID NO: 168;
(XXiV) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(XXV) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
(XXVi) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXViii) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(xxix) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXX) a VH comprising a ce set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxi) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
ce set forth in SEQ ID NO: 46;
(xxxii) a VH comprising a ce set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxiii) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXiV) a VH comprising a ce set forth in SEQ ID NO: 161 and a VL
comprising a ce set forth in SEQ ID NO: 46;
(XXXV) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXVi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 164;
(XXXVii) a VH sing a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 165;
ii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 166;
(xxxix) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 167;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(X1) a VH sing a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(Xli) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(Xlii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
ce set forth in SEQ ID NO: 170;
(Xliii)a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 171;
(XliV) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 172;
(le) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(XlVi) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(XlVii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
ce set forth in SEQ ID NO: 190;
(XlViii)a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL sing a
sequence set forth in SEQ ID NO: 191;
(Xlix) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(l) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(li) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(hi) a VH sing a sequence set forth in SEQ ID NO: 182 and a VL comprising a
sequence set forth in SEQ ID NO: 195;
(liii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(liV) a VH comprising a sequence set forth in SEQ ID NO: 184 and a VL comprising a
sequence set forth in SEQ ID NO: 197;
(lV) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(lVi) a VH sing a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; or
(lVii) a VH comprising a ce set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200.
In one e, the antibody comprises any one of the following pairs of VH
and VL:
[Annotation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(i) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID N038; and
(iii) a VH sing a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46.
In one example, the antibody comprises any one of the following pairs of VH
and VL:
(i) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the ce set forth in SEQ ID NO: 106 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 107 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(iv) a VH encoded by a nucleic acid comprising a sequence at least about 95%
cal to the sequence set forth in SEQ ID NO: 222 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the ce set forth in
SEQ ID NO: 228 or a c acid that hybridizes thereto under moderate to high
stringency conditions;
(V) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(Vi) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 223 or a nucleic acid that hybridizes
thereto under moderate to high ency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a c acid that hybridizes thereto under moderate to high
stringency conditions;
(Vii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL comprising a
sequence set forth in SEQ ID NO: 190;
(Viii) a VH encoded by a c acid comprising a ce at least about 95%
identical to the ce set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a c
acid comprising a sequence at least about 95% identical to the sequence set forth in
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
SEQ ID NO: 229 or a nucleic acid that izes thereto under moderate to high
stringency conditions;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(x) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL comprising a
sequence set forth in SEQ ID NO: 192;
(xii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a c acid that hybridizes
thereto under moderate to high ency conditions and a VL encoded by a nucleic
acid sing a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 231 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(xiv) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes
thereto under moderate to high ency ions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 228 or a c acid that hybridizes thereto under moderate to high
stringency conditions;
(xv) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(xvi) a VH encoded by a nucleic acid sing a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 225 or a nucleic acid that hybridizes
o under moderate to high stringency conditions and a VL encoded by a c
acid comprising a ce at least about 95% identical to the sequence set forth in
SEQ ID NO: 230 or a nucleic acid that hybridizes thereto under te to high
stringency conditions;
(xvii) a VH comprising a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(xviii) a VH encoded by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that hybridizes
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% cal to the sequence set forth in
SEQ ID NO: 230 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(xx) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 226 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 232 or a nucleic acid that hybridizes thereto under moderate to high
stringency conditions;
(xxi) a VH sing a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199;
(xxii) a VH d by a nucleic acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes
thereto under moderate to high stringency ions and a VL encoded by a nucleic
acid comprising a sequence at least about 95% identical to the sequence set forth in
SEQ ID NO: 232 or a nucleic acid that hybridizes o under moderate to high
stringency conditions;
(xxiii) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200; or
(xxiV) a VH encoded by a c acid comprising a sequence at least about 95%
identical to the sequence set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions and a VL encoded by a c
acid comprising a sequence at least about 95% cal to the sequence set forth in
SEQ ID NO: 233 or a nucleic acid that hybridizes thereto under moderate to high
stringency ions.
In one example, the antibody comprises a VH comprising a sequence set forth in
SEQ ID NO: 94 and a VL comprising a sequence set forth in SEQ ID NO: 95.
In one example, the antibody comprises any one of the following pairs of VH
and VL:
(i) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 66 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
(iv) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(V) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 78 and a VL sing a
sequence set forth in SEQ ID NO: 62;
(vii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
ce set forth in SEQ ID NO: 82;
(viii) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a sequence set forth in SEQ ID NO: 90 and a VL comprising a
sequence set forth in SEQ ID NO: 46; or
(X) a VH sing a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO:42 and a VL of SEQ ID NO:46.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 175 and a VL of SEQ ID NO: 188.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 176 and a VL of SEQ ID NO: 189.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 177 and a VL of SEQ ID NO: 190.
The present disclosure also provides a inding antibody comprising a VH
of SEQ ID NO: 178 and a VL of SEQ ID NO: 191.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 179 and a VL of SEQ ID NO: 192.
The present disclosure also provides a A TL1a-binding antibody comprising a
VH of SEQ ID NO: 180 and a VL of SEQ ID NO: 193.
The present disclosure also provides a TL1a-binding antibody sing a VH
of SEQ ID NO: 181 and a VL of SEQ ID NO: 194.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 183 and a VL of SEQ ID NO: 196.
The present disclosure also es a TL1a-binding antibody sing a VH
of SEQ ID NO: 185 and a VL of SEQ ID NO: 198.
The present disclosure also provides a TL1a-binding antibody comprising a VH
of SEQ ID NO: 186 and a VL of SEQ ID NO: 199.
The present disclosure also provides a inding antibody comprising a VH
of SEQ ID NO: 187 and a VL of SEQ ID NO: 200.
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
The antibodies set out in the foregoing list provide one or more of the following
ages:
(i) t TLla interaction with DR3 and do not inhibit interaction of TLla and
DcR3 as ined by the methods described herein;
(ii) reduce the level of apoptosis of the TF-l cells (e.g., about 7x104 cells-8x104
cells (e. g., 7.5x104 cells)) with an EC50 of less than about 2nM (such as less than about
1.5nM or 1.2nM or l.lnM; or lnM or less) compared to the level of apoptosis in the
absence of the TLla-binding n; or
(iii) bind to TLla on the surface of a cell with an EC50 of less than about 10nM, such
as less than about 5nM or 3nM or 2nM, e.g., as assessed using flow cytometry
performed with about 2x105 to 3x105 cells (e. g., 2.5x105 cells).
In one example, the antibody comprises a VH comprising a sequence set forth in
SEQ ID NO: 137 and a VL comprising a sequence set forth in SEQ ID NO: 138.
In one example, the TLla-binding protein comprises a VH comprising a
sequence set forth in SEQ ID NO: 152 and a VL comprising a sequence set forth in
SEQ ID NO: 153.
In one example, the TLla-binding n comprises a VH comprising a
sequence set forth in SEQ ID NO: 162 and a VL comprising a sequence set forth in
SEQ ID NO: 172.
In one example, the TLla-binding protein comprises a VH comprising a
sequence set forth in SEQ ID NO: 163 and a VL sing a ce set forth in
SEQ ID NO: 174.
For example, the antibody comprises a VH comprising a sequence set forth in
SEQ ID NO: 42 and a VL comprising a sequence set forth in SEQ ID NO: 46, wherein
the VH and/or VL comprise one or more of the following substitutions or groups of
substitutions:
(i) the VH comprises an alanine at position 16 of SEQ ID NO: 42;
(ii) the VH comprises an e at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iii) the VH comprises a serine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iV) the VH comprises a histidine at on 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(V) the VH comprises a leucine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Vi) the VH comprises an aspartic acid at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
ation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
(Vii) the VH comprises a tyrosine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Viii) the VH comprises a e at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(ix) the VH comprises a glutamine at on 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(X) the VH comprises a lysine at position 1 00 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xi) the VH comprises an alanine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xii) the VH comprises a serine at position 1 01 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xiii) the VH comprises a histidine at on 101 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xiV) the VH comprises a leucine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xv) the VH comprises an aspartic acid at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvi) the VH comprises a tyrosine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xvii) the VH comprises a glutamine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xviii) the VH ses a lysine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xix) the VH ses an alanine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xx) the VH comprises a serine at position 1 02 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxi) the VH comprises a histidine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxii) the VH comprises a leucine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxiii) the VH comprises a tyrosine at position 102 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxiV) the VH comprises a proline at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxv) the VH comprises a glutamine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(XXVi) the VH comprises a lysine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises an e at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXViii) the VH comprises a serine at position 103 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxix) the VH comprises a histidine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXX) the VH ses a leucine at on 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxi) the VH comprises an ic acid at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXii)the VH ses a tyrosine at position 103 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxxiii) the VH comprises a proline at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiV) the VH comprises a ine at position 103 of SEQ ID NO: 42 and the
VL comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXV) the VH comprises a lysine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVi) the VH comprises a serine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVii) the VH comprises a histidine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXViii) the VH comprises a leucine at position 104 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(xxxix) the VH comprises an aspartic acid at position 104 of SEQ ID NO: 42 and
the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(X1) the VH comprises a tyrosine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(Xli) the VH comprises a proline at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlii) the VH comprises a glutamine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xliii) the VH comprises a lysine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XliV) the VH comprises an alanine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
(le) the VH comprises a histidine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVi) the VH comprises a leucine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVii) the VH comprises an aspartic acid at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(XlViii)the VH ses a tyrosine at position 105 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(Xlix) the VH comprises a proline at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(l) the VH comprises a glutamine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(li) the VH comprises a lysine at position 105 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(hi) the VH comprises an alanine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liii) the VH comprises a serine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liV) the VH ses a histidine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1V) the VH comprises a leucine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVi) the VH comprises an aspartic acid at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVii) the VH comprises a tyrosine at position 107 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(1Viii)the VH comprises a proline at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(lix) the VH comprises a glutamine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1X) the VH comprises a lysine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lxi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an alanine at position 23 of SEQ ID NO: 46;
(lxii) the VH comprises a ine at position 41 of SEQ ID NO: 42 and the VL
comprises an ic acid at position 28 of SEQ ID NO: 46;
(lxiii)the VH comprises a ine at position 41 of SEQ ID NO: 42 and the VL
comprises a tyrosine at position 33 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
ation] jxd
Unmarked set by jxd
(lxiv) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 34 of SEQ ID NO: 46;
(lxv) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an gine at position 53 of SEQ ID NO: 46;
(lxvi) the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 54 of SEQ ID NO: 46;
) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a alanine at position 82 of SEQ ID NO: 46;
(lxviii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 95 of SEQ ID NO: 46;
(lxix) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 96 of SEQ ID NO: 46;
(lXX) the VH ses a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXi) the VH comprises a serine at on 47 of SEQ ID NO: 42 and the VL comprises
an threonine at position 23 of SEQ ID NO: 46;
(lxxii) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 76 of SEQ ID
NO: 46;
(lxxiii) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a serine at
position 24 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lXXiv) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23, a serine at position 24 and a ine at position 76 each relative to
SEQ ID NO: 46;
(lxxv) the VH comprises a e at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lxxvi) the VH comprises a proline at position 41, a leucine at on 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a ine
at position 76 of SEQ ID NO: 46;
i) the VH comprises a proline at position 41, a e at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 23, a serine at position 24 and a
threonine at position 76 each relative to SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(lxxviii) the VH comprises a e at position 41, a leucine at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(lxxix) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24 and a threonine at position 76 each relative to SEQ ID NO: 46;
(lxxx) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73 an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24, a threonine at position 76 and a glutamic acid at position 51 each relative
to SEQ ID NO: 46;
(lxxxi) the VH comprises a proline at position 41, a leucine at position 51, an alanine at
on 72, an aspartic acid at position 73, an arginine at position 74, a threonine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL comprises a threonine at on 23, a serine at position
24, a ine at position 76 and a glutamic acid at position 51 each relative to SEQ
ID NO: 46; or
(lxxxii) the VH comprises a proline at position 41, a leucine at position 51, an
e at on 72, an aspartic acid at position 73, an arginine at position 74, a
threonine at on 76, a glutamic acid at position 102 and an alanine at position 105
each relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a
serine at position 24, a threonine at position 76 and a e at position 51 each
relative to SEQ ID NO: 46.
In one example, a TLla—binding protein of the present disclosure comprises a
human or non-human e heavy chain immunoglobulin constant region selected
from a group consisting of IgG1, IgG2, IgG3, IgG4, IgD, IgM, IgE and IgA. An
exemplary heavy chain immunoglobulin nt region is an IgG constant region, e. g.,
an IgGl nt region, such as a human IgG1 constant region. For example, a human
IgG1 constant region comprises a Fc region sing a sequence set forth in SEQ ID
NO: 134. In one example, the human or non-human e heavy chain
immunoglobulin constant region lacks a C—terminal lysine residue.
In another e, a TLla-binding protein of the present disclosure comprises
a human or non-human primate light chain immunoglobulin constant region selected
from a group ting of kappa or lambda. In one example, the inding protein
comprises a human light chain constant region comprising a sequence set forth in SEQ
ID NO: 135 (kappa) or SEQ ID NO: 136 (lambda).
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
The present disclosure also provides an isolated or recombinant nucleic acid
encoding the inding protein of the present disclosure or a sequence having at
least about 80% identity thereto or a sequence that hybridizes thereto under moderate or
high stringency conditions. In this regard, the disclosure is not limited to the specific
exemplified nucleic acids described herein, but also encompasses any nucleic acid that
encodes a inding protein of the disclosure as a result of degeneracy of the
genetic code. For e, the nucleic acid may be codon zed for expression in
a particular cell type.
In one example, the nucleic acid comprises a ce set forth in any one of
SEQ ID NOs: 96 to 118 or a ce having at least about 80% identity thereto or a
sequence that hybridizes thereto under moderate or high stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
102 or a sequence having at least about 80% ty thereto or a sequence that
hybridizes o under moderate or high stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
103 or a sequence having at least about 80% identity thereto or a sequence that
hybridizes o under moderate or high stringency ions.
In one e, the nucleic acid comprises a sequence set forth in SEQ ID NO:
102 and a sequence set forth in SEQ ID NO: 103 or a sequence having at least about
80% identity thereto or a sequence that hybridizes thereto under moderate or high
stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
104 or a sequence having at least about 80% ty thereto or a sequence that
izes thereto under moderate or high stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
105 or a sequence having at least about 80% identity thereto or a sequence that
izes thereto under moderate or high stringency conditions.
In one example, the nucleic acid comprises a ce set forth in SEQ ID NO:
104 and a sequence set forth in SEQ ID NO: 105 or a sequence having at least about
80% identity thereto or a sequence that hybridizes thereto under moderate or high
stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
106 or a sequence having at least about 80% identity thereto or a sequence that
hybridizes thereto under moderate or high stringency conditions.
In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
107 or a sequence having at least about 80% identity thereto or a sequence that
hybridizes thereto under moderate or high stringency conditions.
ation] jxd
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ation] jxd
MigrationNone set by jxd
[Annotation] jxd
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In one example, the nucleic acid comprises a sequence set forth in SEQ ID NO:
106 and a sequence set forth in SEQ ID NO: 107 or a sequence having at least about
80% identity thereto or a sequence that hybridizes thereto under moderate or high
stringency conditions.
In one example, the nucleic acid comprises a sequence at least 95% identical to
a ce set forth in any one of SEQ ID NOs: 106, 107 or 222 to 233 or a nucleic
acid that hybridizes thereto under te to high ency conditions.
In one example, the nucleic acid comprises one or more of the following:
(i) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 106 or a nucleic acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 107 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(ii) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 222 or a nucleic acid that hybridizes thereto under
moderate to high ency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 228 or a nucleic acid
that hybridizes thereto under moderate to high stringency ions;
(iii) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 223 or a nucleic acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 228 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(iv) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes thereto under
moderate to high ency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 229 or a nucleic acid
that hybridizes o under moderate to high stringency conditions;
(V) a nucleic acid comprising a ce at least about 95% identical to the
sequence set forth in SEQ ID NO: 224 or a c acid that hybridizes thereto under
te to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 230 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(Vi) a c acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 224 or a c acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 231 or a c acid
that hybridizes thereto under moderate to high stringency conditions;
[Annotation] jxd
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[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(vii) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 224 or a nucleic acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 228 or a nucleic acid
that hybridizes thereto under moderate to high ency conditions;
(viii) a nucleic acid comprising a ce at least about 95% identical to the
sequence set forth in SEQ ID NO: 225 or a nucleic acid that hybridizes thereto under
moderate to high stringency ions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 230 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(ix) a nucleic acid comprising a sequence at least about 95% identical to the
ce set forth in SEQ ID NO: 226 or a c acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 230 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(x) a nucleic acid comprising a sequence at least about 95% identical to the
sequence set forth in SEQ ID NO: 226 or a nucleic acid that izes thereto under
moderate to high stringency conditions and a nucleic acid comprising a sequence at
least about 95% identical to the sequence set forth in SEQ ID NO: 232 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions;
(xi) a c acid sing a sequence at least about 95% identical to the
ce set forth in SEQ ID NO: 227 or a c acid that hybridizes thereto under
moderate to high stringency conditions and a nucleic acid comprising a ce at
least about 95% identical to the ce set forth in SEQ ID NO: 232 or a nucleic acid
that hybridizes thereto under moderate to high stringency conditions; or
(xii) a nucleic acid comprising a sequence at least about 95% identical to the sequence
set forth in SEQ ID NO: 227 or a nucleic acid that hybridizes thereto under moderate to
high stringency conditions and a c acid comprising a sequence at least about 95%
identical to the ce set forth in SEQ ID NO: 233 or a nucleic acid that hybridizes
thereto under moderate to high stringency conditions.
Sequences of exemplary nucleic acids and combinations thereof are set out in
Table l and are to be taken to provide literal t for each individual sequence and
combination thereof.
In one example, such a nucleic acid is included in an expression construct in
which the nucleic acid is operably linked to a promoter. Such an expression construct
can be in a vector, e.g., a plasmid.
[Annotation] jxd
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[Annotation] jxd
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In examples of the disclosure directed to single polypeptide TLla-binding
proteins, the expression construct may comprise a promoter linked to a nucleic acid
encoding that polypeptide chain.
In examples directed to multiple polypeptides that form a TLla-binding protein,
an expression construct of the disclosure comprises a nucleic acid encoding one of the
polypeptides (e. g., comprising a VH) operably linked to a promoter and a nucleic acid
encoding another of the polypeptides (e. g., comprising a VL) operably linked to a
promoter.
In another example, the expression construct is a bicistronic expression construct,
e. g., comprising the following operably linked ents in 5’ to 3’ order:
(i) a promoter
(ii) a nucleic acid ng a first polypeptide;
(iii) an internal ribosome entry site; and
(iv) a nucleic acid encoding a second ptide.
For example, the first polypeptide comprises a VH and the second polypeptide
ses a VL, or the first polypeptide ses a VL and the second polypeptide
comprises a VH.
The present disclosure also contemplates separate expression ucts one of
which encodes a first polypeptide (e. g., comprising a VH) and another of which encodes
a second polypeptide (e. g., comprising a VL). For example, the present disclosure also
provides a composition comprising:
(i) a first expression construct comprising a nucleic acid encoding a polypeptide
(e. g., comprising a VH operably linked to a er); and
(ii) a second expression construct comprising a c acid encoding a ptide
(e. g., comprising a VL operably linked to a promoter),
wherein the first and second polypeptides associate to form a TLla-binding protein of
the present disclosure.
The present disclosure also provides an isolated cell expressing a TLla-binding
protein of the disclosure or a recombinant cell cally-modified to express a TLlabinding protein of the disclosure.
In one example, the cell comprises the expression construct of the disclosure or:
(i) a first sion construct sing a nucleic acid encoding a polypeptide
(e. g., comprising a VH) operably linked to a promoter; and
(ii) a second expression construct comprising a nucleic acid encoding a ptide
(e. g., comprising a VL) operably linked to a er,
n the first and second polypeptides associate to form a TLla-binding protein of
the present disclosure.
[Annotation] jxd
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Examples of cells of the present disclosure include ial cells, yeast cells,
insect cells or mammalian cells. Exemplary cells are ian.
The present disclosure additionally es methods for producing a TLla-
binding protein of the disclosure. For e, such a method involves maintaining the
expression construct(s) of the disclosure under conditions sufficient for the TLla-
binding protein to be produced.
In one example, a method for producing a TLla-binding protein of the
disclosure comprises culturing the cell of the disclosure under conditions sufficient for
the protein to be produced and, ally, secreted.
In one example, the method for producing a TLla-binding protein of the
disclosure additionally comprises isolating the protein.
The present disclosure also provides a composition comprising the TLla-
g protein, nucleic acid, expression uct or cell of the present disclosure and
a suitable carrier. In one example, the composition comprises the TLla-binding protein
of the present disclosure and a suitable carrier. In one example, the r is
pharmaceutically acceptable, e.g., the composition is a pharmaceutical composition.
The t disclosure also provides a method for treating or preventing
symptoms of a condition (e.g., a TLla-mediated condition) in a cell, tissue, organ or
subject, the method comprising administering the TLla-binding protein, nucleic acid,
expression construct, cell or ition of the present sure to the cell, tissue,
organ or subject. In one example, the present disclosure provides a method for treating
or preventing a condition (e. g., a TLla-mediated condition) in a subject, the method
comprising administering the inding protein, nucleic acid, expression construct,
cell or composition of the present disclosure to the subject. In this regard, a method of
preventing a condition can prevent a relapse of a condition having a relapsing-remitting
form, such as multiple sclerosis, e.g., the protein is administered during remission to
thereby prevent a relapse.
The present disclosure also provides a method for inducing or enhancing
angiogenesis in a subject, the method comprising administering the inding
protein, nucleic acid, sion construct, cell or composition of the present disclosure
to the subject.
The present disclosure also es for use of the TLla-binding protein,
nucleic acid, expression construct, cell or composition of the present disclosure in
medicine.
The present disclosure also provides for use of the TLla-binding protein,
c acid, expression construct, or cell in the manufacture of a medicament or
prevention for ng or preventing symptoms of a condition (e. g., a TLla-mediated
[Annotation] jxd
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condition) or for treating or preventing a ion (e. g., a TLla-mediated condition) or
for inducing or enhancing angiogenesis in a t.
The present disclosure also provides the TLla-binding protein, nucleic acid,
expression construct, or cell for use in treating or preventing symptoms of a condition
(e.g., a TLla-mediated ion) or for treating or preventing a ion (e.g., a
TLla-mediated condition) or for inducing or enhancing angiogenesis in a subject.
In one example, a method of treatment or prophylaxis of the present disclosure
additionally comprises diagnosing the condition, e. g., by performing a method
described herein.
In one example, a method of treatment or laxis of the present disclosure
additionally comprises detecting the level of TLla in a subject and administering a
further dose of the TLla-binding protein, nucleic acid, expression construct, cell or
composition of the disclosure if the level of TLla is not significantly reduced or is not
reduced to a level not associated with a condition.
The present disclosure also es a method for inhibiting interaction of TLla
and DR3 (and in one example, not inhibiting interaction of TLla and DcR3) in a cell,
, organ or subject, the method comprising administering the TLla-binding
protein, nucleic acid, expression construct, cell or ition of the present disclosure
to the cell, , organ or subject. In one example, the subject suffers from a
condition (e. g., a TLla-mediated condition).
The present disclosure also provides a method for detecting TLla in a sample,
the method comprising ting a sample with the TLla-binding protein of the
present disclosure such that an antigen-protein complex forms and detecting the
complex, wherein detecting the complex is indicative of TLla in the sample.
The present disclosure also provides a method for ing TLla in a subject,
the method comprising detecting the TLla-binding protein of the t disclosure in
the subject, wherein the protein is conjugated to a detectable label. In one example, the
method comprises administering the protein to the subject.
The present disclosure also es a method for diagnosing a TLla-mediated
condition in a subject, the method sing performing the method of the disclosure
to detect TLla in a sample from the subject, wherein detection of TLla in the sample is
indicative of the TLla-mediated condition.
In one example, the method comprises determining the level of TLla in the
sample, wherein an increased or decreased level of TLla in the sample compared to a
control sample is indicative of the TLla-mediated ion.
In one example, the results of a method to detect TLla or diagnose/prognose a
condition are provided, e. g., in paper or machine-readable form.
[Annotation] jxd
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The present sure also provides a method sing ing the results
of a method to detect TLla or diagnose/prognose a condition of the present disclosure
and administering a therapeutic or prophylactic composition or recommending such
administration. In one example, the composition is a composition of the present
disclosure.
Exemplary conditions to be treated, prevented, diagnosed or prognosed are
THl7-mediated conditions, inflammatory conditions, autoimmune conditions or
conditions associated with or caused by insufficient angiogenesis. Suitable conditions
are described herein.
In one e, a condition to be treated, prevented, diagnosed or prognosed is
an autoimmune disease. For example, the condition is uveitis, ulcerative colitis,
Crohn’s disease, irritable bowel syndrome, rheumatoid tis, polyarthritis, multiple
sclerosis, asthma or chronic obstructive pulmonary disease.
In one example, the condition is an inflammatory bowel condition, such as,
colitis, e. g., ulcerative colitis or Crohn’s e.
The present disclosure also provides a method of selecting a TLla-binding
protein which binds specifically to TLla and inhibits ction of TLla and DR3 and
which does not t interaction of TLla and DcR3 from a ity of TLla-binding
proteins, the method comprising:
contacting the plurality of TLla-binding proteins to a TLla mutein in which the
arginine at amino acid position 32 of SEQ ID NO:202 has been substituted with an
alanine and/or the arginine at amino acid position 85 has been substituted with alanine
under conditions ient to allow binding of TLla-binding proteins to the mutein to
form a TLla-binding protein-TLla mutein complex and a depleted plurality of TLla-
binding proteins which do not bind the TLla mutein,
and collecting TLla-binding proteins which do not bind to the TLla mutein
from the depleted plurality of TLla-binding proteins, wherein the collected TLla-
binding proteins bind specifically to TLla and inhibit interaction of TLla and DR3 and
do not inhibit interaction of TLla and DcR3.
The present disclosure also provides a method of isolating a TLla-binding
protein which binds specifically to TLla and ts interaction of TLla and DR3 and
which does not inhibit interaction of TLla and DcR3 from a plurality of TLla-binding
proteins, the method comprising isolating from the plurality of TLla-binding proteins
one or more TLla-binding ns that do not bind to a TLla mutein in which the
ne at amino acid position 32 of SEQ ID NO:202 has been substituted with an
alanine and/or the arginine at amino acid on 85 has been substituted with alanine.
The plurality of TLla-binding proteins may be present in a library of antibodies
or n binding domains, such as, a phage display, ime display or yeast
[Annotation] jxd
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display library. The plurality of TLla-binding proteins may be present in an antiserum.
The plurality of TLla-binding proteins may be present in hybridoma culture
supernatants.
The present disclosure also es an isolated polypeptide comprising a
sequence set forth in SEQ ID NO: 202 in which the arginine at amino acid position 32
as been substituted with an alanine and/or the arginine at amino acid position 85 has
been substituted with alanine.
BRIEF PTION OF THE FIGURES
Figures 1A to 1H are diagrammatic representations showing sequences of
variable regions of antibodies. In alignments shown in Figures 1D to lH any identical
amino acids are indicated by a period, i.e., “.”. Figure 1A shows sequences of VH
regions of human anti-TLla dies. Figure 1B shows sequences of VL regions of
human anti-TLla antibodies. Figure 1C shows sequences of VH regions of anti-TLla
antibody C320 and some tives thereof. Figure 1D shows alignment of VH
sequences of selected human antibodies into which the VH CDRs l, 2 and 3 of C320
were grafted. Figure 1E shows a consensus sequence of VH regions of derivatives of
C320. Figure 1F shows sequences of VL s of Lla dy C320 and
derivatives thereof. Figure 1G shows an alignment of human VL sequences of
antibodies into which the VL CDRs l, 2 and 3 of C320 were grafted. Figure 1H shows a
consensus sequence of VL regions of derivatives of C320. Boxed regions contain CDRs
(as ted) as defined by the Kabat numbering system and the enhanced Chothia
numbering system. CDRs defined by the Kabat numbering system are shown in bold.
CDRs defined by the enhanced Chothia numbering system are underlined.
Figure 2 is a graphical representation showing results of a potency assay
demonstrating the ability of a range of anti-TLla antibodies to inhibit TLla-induced
apoptosis of TF—l cells. Five ug/ml of anti-TLla antibodies were screened for their
ability to t TLla-induced apoptosis in TF-l cells.
Figure 3 is a graphical entation of results of an assay to identify highly
potent anti-TLla antibodies. Results depicted show the level of inhibition of TLla-
d apoptosis of TF—l cells achieved at various concentrations of test antibodies
(maximum concentration tested 5 ug/mL). These levels permit determination of the
EC50 of anti-TLla antibodies for the tion of TLla-induced sis of TF—l
cells, which allows for functional isons based on relative potency.
Figure 4A is a graphical representation showing the level of inhibition of
interaction of TLla with DR3 achieved at various concentrations of test dies
(maximum concentration tested 25 ug/mL). Antibodies C320, C321 and C323 inhibited
the interaction between TLla and DR3 at us concentrations.
[Annotation] jxd
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Figure 4B is a graphical representation showing the level of inhibition of
interaction of TLla with DcR3 achieved at various concentrations of test dies
(maximum tration tested 25 ug/mL). Antibodies C320, C321 and C323 did not
detectably inhibit the interaction between TLla and DcR3 at dy concentrations of
ug/mL or less.
Figure 4C is a graphical representation showing the level of inhibition of
interaction of TLla with DR3 ed at various concentrations of test antibodies
(maximum concentration tested L). Antibodies C320-0, C320-l68 and C320-
179 inhibited the interaction between TLla and DR3 at numerous trations.
dies 1B4 and C300-25 are included for the purposes of comparison
Figure 4D is a graphical representation showing the level of inhibition of
interaction of TLla and DcR3 achieved at various concentrations of test dies
(maximum concentration tested 100ug/mL). Antibodies C320-0, C320-l68 and C320-
179 did not detectably inhibit the interaction between TLla and DcR3. Antibodies 1B4
and C300-25 inhibited the ction n TLla and DcR3 at various
concentrations and are included for the purposes of comparison
Figure 5A includes two a graphical representations showing the binding of
various concentrations of test antibodies to soluble human TLla (SEQ ID NO: 202; top
panel) and soluble human TLla in which arginine at residue 32 has been substituted
with alanine (R32A mutein, bottom panel). Antibodies C320-0, C320-l68 and C320-
179 all bound TLla at various concentrations but not R32A mutein TLla. Anti-TLla
antibodies 1B4 and l6H2 (as described in US20090280116) bound both TLla and
R32A mutein TLla at various concentrations. The isotype control antibody did not bind
any form of TLla
Figure 5B is a graphical representation showing the binding of various
concentrations of test antibodies to soluble human TLla in which ne at residue 85
has been substituted with alanine (R85A mutein, top panel) and soluble human TLla in
which arginines at residue 32 and residue 85 have been tuted with alanine
R85A mutein, bottom panel). Antibodies , C320-l68 and C320-l79 did
not bind either R85A or R32A+R85A mutein TLla. Anti-TLla antibodies 1B4 and
l6H2 (as described in US20090280116) bound both R85A or R32A+R85A mutein
TLla at various concentrations. The e control antibody did not bind any form of
TLla
Figure 5C is a graphical representation showing the binding of soluble human
TLla, R32A mutein TLla and R85A mutein TLla at a concentration of lug/ml to
receptors DR3 and DcR3. TLla bound both receptors equally well. R32A and R85A
mutein TLla bound DcR3 to a similar extent as did TLla but bound DR3 at a level
approximately 50% or more lower than TLla binding to DcR3
ation] jxd
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Figure 5D is a diagrammatic representation depicting the X-ray crystal structure
of trimeric human TLla (PDB: 3K51) (gray) with the residues R32 and R85
highlighted in black on each monomer.
Figure 6 is a graphical representation showing the ability of antibodies C320,
C321, C323 and 1B4 to bind to cell surface TLla. Binding was assessed using flow
cytometry, in which results are presented as mean fluorescence intensity (MFI). All
antibodies, except the isotype control, bound TLla
Figure 7A is a cal entation showing production of cell surface TLla
by mitogen (Concanavalin A)-stimulated peripheral blood mononuclear cells (PBMCs).
The shaded graph represents an isotype control antibody and the line graph represents
cell surface TLla as detected by a chimeric man uman TLla.
Figure 7B is a graphical representation showing increased tion of
secreted TLla in PBMCs as mitogen (Concanavalin A)-stimulation is sed.
Figure 8A is a graphical entation showing the ability of anti-TLla
antibodies (maximum concentration tested 50ug/mL) to inhibit interferon y (IFN-y)
production induced by endogenous human TLla. Endogenous TLla enhanced cytokine
production by stimulated PBMCs. Antibodies C320 and C323 inhibited the production
of lFN—y. Antibody 1B4 is included for the purposes of comparison
Figure 8B is a graphical entation showing the ability of anti-TLla
antibodies (maximum concentration tested L) to t IL-13 production
induced by endogenous human TLla. Endogenous TLla enhanced cytokine production
by stimulated PBMCs. Antibodies C320 and C323 inhibited the production of IL-13
dy 1B4 is included for the purposes of comparison.
Figure 9A is a mmatic entation showing an alignment if the light
chain sequence of C320 against the germline sequence of highest homology, IGLVl-
40*01. Any identical amino acids are indicated by a period, i.e., “.”. Differences in
amino acid sequences in the CDR regions are identified.
Figure 9B is a diagrammatic representation showing an alignment of VH regions
of antibodies identified herein.
Figure 9C is a diagrammatic representation showing an alignment of VL s
of antibodies identified herein.
Figure 9D is a copy of a photographic representation showing s of
isoelectric focusing gel comparing C320-168, C320-163 and C320-170. C320-168 has
-6 distinct charged isoforms compared to 1-2 isoforms Visualized for 63 and
C320-170.
Figure 9E is a graphical representation showing the ability of antibodies C320-
168, C320-179 and C320-183 to lize TLla-induced apoptosis of TF-l cells at
various concentrations (maximum concentration tested lOug/mL). Antibodies C320-0
[Annotation] jxd
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and 1B4 are included for comparison. All antibodies inhibit TLla-induced apoptosis of
TF-l cells at multiple concentrations.
Figure 10A is a graphical representation showing the total area of colon
ulcerated (cmz) in rats in the days following DNBS-induced colitis. Rats were treated
with antibody 68 (10mg/kg), vehicle (negative control) days 0 and 4 or
alazine (standard of care compound) daily from day 0 (with results for each
treatment group indicated). C320-168 reduced average ulcer area compared to e
treated animals to a comparable extent as sulfasalazine.
Figure 10B is a graphical representation showing the weight change (g) in rats
in the days following oxazalone-induced colitis. Rats were treated with antibody C320-
168 (10mg/kg) or isotype control kg) on days 0 and 4 or alazine (80C (5-
ASA); rd of care compound) daily from day 0 (with results for each treatment
group indicated.) C320-168 ameliorated weight loss relative to the isotype control
antibody to a comparable extent as sulfasalazine.
Figure 10C is a graphical representation g stool consistency (DAI —
Disease ty Index) in rats in the days following oxazalone-induced colitis. Rats
were treated with antibody C320—168 (10mg/kg) or e l (10mg/kg) on days
0 and 4 or sulfasalazine (SoC (5-ASA); standard of care compound) daily from day
0(with results for each treatment group indicated). C320-168 improved the clinical
signs of disease (stool consistency) relative to the isotype control antibody.
Figure 11A is a graphical representation showing stool consistency (DAI —
Disease Activity Index) in rats in the days following dextran sulphate sodium (DSS)-
d colitis. Rats were treated with antibody C320-168 (10mg/kg), or isotype
control (10mg/kg) twice weekly from day 4 after e ion or sulfasalazine
(SoC (5-ASA); standard of care compound) daily from day 4 after disease induction
(with results for each treatment group ted). C320—168 improved the clinical signs
of disease (stool consistency) relative to the e control antibody to a r extent
as sulfasalazine.
Figure 11B is a cal representation showing the weight change (%) in rats
in the days following DSS-induced colitis. Rats were treated with antibody C320-168
(10mg/kg or isotype control (10mg/kg) twice weekly from day 4 after disease induction
or sulfasalazine (SoC (5-ASA); standard of care nd) daily from day 4 after
disease induction (with results for each treatment group indicated). C320-168
ameliorated weight loss relative to the isotype control antibody to a similar extent as
sulfasalazine
Figure 12 is a graphical representation showing the results of an ELISA assay to
identify the binding of antibodies to different TLla isoforms. Both C320-168 and
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C320-179 bound the longer (72-251) and shorter (84-251) isoforms of soluble, cleaved
TLla.
DETAILED DESCRIPTION
General
hout this specification, unless specifically stated ise or the context
requires otherwise, reference to a single step, composition of matter, group of steps or
group of itions of matter shall be taken to ass one and a plurality (i.e.
one or more) of those steps, compositions of matter, groups of steps or groups of
itions of matter. Thus, as used herein, the singular forms “a”, “an” and “the”
include plural aspects unless the context clearly dictates otherwise. For example,
reference to “a” es a single as well as two or more; reference to “an” includes a
single as well as two or more; reference to “the” includes a single as well as two or
more and so forth.
Each example of the present disclosure described herein is to be applied mutatis
mutandis to each and every other example unless ically stated otherwise.
Those skilled in the art will appreciate that the disclosure herein is susceptible to
variations and modifications other than those specifically described. It is to be
understood that the disclosure includes all such variations and modifications. The
disclosure also includes all of the steps, features, compositions and compounds referred
to or indicated in this specification, individually or collectively, and any and all
combinations or any two or more of said steps or features.
The present disclosure is not to be limited in scope by the specific examples
described herein, which are intended for the purpose of exemplification only.
Functionally-equivalent products, compositions and methods are clearly within the
scope of the disclosure, as bed herein.
The present disclosure is performed without undue experimentation using,
unless otherwise indicated, conventional techniques of molecular biology,
microbiology, Virology, recombinant DNA technology, peptide synthesis in solution,
solid phase peptide synthesis, and immunology. Such procedures are described, for
example, in Sambrook, Fritsch & Maniatis, lar Cloning: A Laboratory Manual,
Cold Spring Harbor tories, New York, Second Edition (1989), whole of Vols 1,
II, and III; Benny K.C.Lo, Antibody Engineering: Methods and Protocols, (2004)
Humana Press, Vol. 248; DNA Cloning: A Practical Approach, Vols. I and II (D. N.
, ed., 1985), IRL Press, , whole of text; Oligonucleotide sis: A
cal Approach (M. J. Gait, ed, 1984) IRL Press, Oxford, whole of text, and
particularly the papers therein by Gait, ppl-22; Atkinson et al., pp35-81; Sproat et al.,
pp 83-115; and Wu et al., pp 135-151; 4. Nucleic Acid Hybridization: A Practical
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Approach (B. D. Hames & S. J. Higgins, eds., 1985) IRL Press, Oxford, whole of text;
Immobilized Cells and s: A Practical Approach (1986) IRL Press, Oxford,
whole of text; Perbal, B., A Practical Guide to Molecular Cloning (1984); Methods In
Enzymology (S. Colowick and N. Kaplan, eds., Academic Press, Inc.), whole of series;
J.F. Ramalho Ortigao, “The Chemistry of Peptide Synthesis” In: Knowledge database
of Access to Virtual Laboratory website (Interactiva, Germany); Sakakibara m.
s. Res. Commun. 73: 336-342, 1976; Merrifield J. Am. Chem. Soc. 85: 2149-
2154, 1963; Barany and Merrifield (1979) in The Peptides (Gross, E. and Meienhofer,
J. eds.), vol. 2, pp. 1-284, Academic Press, New York. 12. Wunsch, E., ed. (1974)
Synthese von Peptiden in Houben-Weyls Metoden der Organischen Chemie (Muler, E.,
ed.), vol. 15, 4th edn., Parts 1 and 2, Thieme, Stuttgart; Bodanszky, M. (1984)
Principles of Peptide sis, er-Verlag, Heidelberg; Bodanszky, M. &
zky, A. (1984) The Practice of Peptide Synthesis, Springer-Verlag, Heidelberg;
zky Int. J. Peptide Protein Res. 25: 449-474, 1985; Handbook of Experimental
Immunology, Vols. I-IV (D. M. Weir and C. C. Blackwell, eds., 1986, Blackwell
Scientific ations); and Animal Cell Culture: Practical ch, Third Edition
(John R. W. Masters, ed., 2000), ISBN 0199637970, whole of text.
The term “and/or”, e. g., “X and/or Y” shall be understood to mean either “X and
Y” or “X or Y” and shall be taken to provide it support for both meanings or for
either meaning.
Throughout this specification the word ise”, or variations such as
“comprises” or “comprising”, will be understood to imply the inclusion of a stated
element, integer or step, or group of elements, integers or steps, but not the exclusion of
any other element, integer or step, or group of ts, integers or steps.
Key to Sequence Listing
SEQ ID NO: 1: amino acid sequence of human TLla extracellular domain with N-
terminal HIS and FLAG tags
SEQ ID NO 2: amino acid sequence of C336 VH
SEQ ID NO: 3: amino acid sequence of C336 HCDRl
SEQ ID NO: 4: amino acid sequence of C336 HCDR2
SEQ ID NO: 5: amino acid sequence of C336 HCDR3
SEQ ID NO: 6: amino acid sequence of C336 VL
SEQ ID NO: 7: amino acid sequence of C336 LCDRl
SEQ ID NO: 8: amino acid sequence of C336 LCDR2
SEQ ID NO: 9: amino acid sequence of C336 LCDR3
SEQ ID NO: 10: amino acid sequence of C334 VH
SEQ ID NO: 11: amino acid sequence of C334 HCDRl
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SEQ ID NO: 12: amino acid sequence of C334 HCDR2
SEQ ID NO: 13: amino acid sequence of C3 34 HCDR3
SEQ ID NO: 14: amino acid sequence of C3 34 VL
SEQ ID NO: 15: amino acid sequence of C334 LCDR1
SEQ ID NO: 16: amino acid sequence of C3 34 LCDR2
SEQ ID NO: 17: amino acid sequence of C3 34 LCDR3
SEQ ID NO: 18: amino acid sequence of C333 VH
SEQ ID NO: 19: amino acid sequence of C333 HCDR1
SEQ ID NO: 20: amino acid ce of C333 HCDR2
SEQ ID NO: 21: amino acid sequence of C333 HCDR3
SEQ ID NO: 22: amino acid sequence of C333 VL
SEQ ID NO: 23: amino acid sequence of C333 LCDR1
SEQ ID NO: 24: amino acid sequence of C333 LCDR2
SEQ ID NO: 25: amino acid ce of C333 LCDR3
SEQ ID NO: 26: amino acid sequence of C323 VH
SEQ ID NO: 27: amino acid sequence of C323 HCDR1
SEQ ID NO: 28: amino acid sequence of C323 HCDR2
SEQ ID NO: 29: amino acid sequence of C323 HCDR3
SEQ ID NO: 30: amino acid sequence of C323 VL
SEQ ID NO: 31: amino acid sequence of C323 LCDR1
SEQ ID NO: 32: amino acid sequence of C323 LCDR2
SEQ ID NO: 33: amino acid sequence of C323 LCDR3
SEQ ID NO: 34: amino acid sequence of C321 VH
SEQ ID NO: 35: amino acid ce of C321 HCDR1
SEQ ID NO: 36: amino acid sequence of C321 HCDR2
SEQ ID NO: 37: amino acid sequence of C321 HCDR3
SEQ ID NO: 38: amino acid sequence of C321 VL
SEQ ID NO: 39: amino acid sequence of C321 LCDR1
SEQ ID NO: 40: amino acid sequence of C321 LCDR2
SEQ ID NO: 41: amino acid sequence of C321 LCDR3
SEQ ID NO: 42: amino acid sequence of C320 VH
SEQ ID NO: 43: amino acid sequence of C320 HCDR1
SEQ ID NO: 44: amino acid sequence of C320 HCDR2
SEQ ID NO: 45: amino acid sequence of C320 HCDR3
SEQ ID NO: 46: amino acid sequence of C320 VL
SEQ ID NO: 47: amino acid sequence of C320 LCDR1
SEQ ID NO: 48: amino acid sequence of C320 LCDR2
SEQ ID NO: 49: amino acid sequence of C320 LCDR3
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SEQ ID NO: 50: amino acid sequence of C319 VH
SEQ ID NO: 51: amino acid sequence of C319 HCDR1
SEQ ID NO: 52: amino acid sequence of C319 HCDR2
SEQ ID NO: 53: amino acid sequence of C319 HCDR3
SEQ ID NO: 54: amino acid sequence of C319 VL
SEQ ID NO: 55: amino acid sequence of C319 LCDR1
SEQ ID NO: 56: amino acid sequence of C319 LCDR2
SEQ ID NO: 57: amino acid ce of C319 LCDR3
SEQ ID NO: 58: amino acid sequence of C320-3 VH
SEQ ID NO: 59: amino acid sequence of C320-3 HCDR1
SEQ ID NO: 60: amino acid sequence of C320-3 HCDR2
SEQ ID NO: 61: amino acid sequence of C320-3 HCDR3
SEQ ID NO: 62: amino acid sequence of C320-5 VL
SEQ ID NO: 63: amino acid sequence of C320-5 LCDR1
SEQ ID NO: 64: amino acid sequence of C320-5 LCDR2
SEQ ID NO: 65: amino acid ce of C320-5 LCDR3
SEQ ID NO: 66: amino acid sequence of C320-90 VH
SEQ ID NO: 67: amino acid sequence of C320-90 HCDR1
SEQ ID NO: 68: amino acid sequence of C320-90 HCDR2
SEQ ID NO: 69: amino acid sequence of C320-90 HCDR3
SEQ ID NO: 70: amino acid sequence of C320-103 VH
SEQ ID NO: 71: amino acid sequence of C320-103 HCDR1
SEQ ID NO: 72: amino acid sequence of C320-103 HCDR2
SEQ ID NO: 73: amino acid sequence of C320-103 HCDR3
SEQ ID NO: 74: amino acid sequence of C320-114 VH
SEQ ID NO: 75: amino acid sequence of C320-114 HCDR1
SEQ ID NO: 76: amino acid sequence of C320-114 HCDR2
SEQ ID NO: 77: amino acid sequence of C320-114 HCDR3
SEQ ID NO: 78: amino acid sequence of 15 VH
SEQ ID NO: 79: amino acid sequence of C320-115 HCDR1
SEQ ID NO: 80: amino acid sequence of 15 HCDR2
SEQ ID NO: 81: amino acid sequence of C320-115 HCDR3
SEQ ID NO: 82: amino acid sequence of C320-120 VL
SEQ ID NO: 83: amino acid sequence of 20 LCDR1
SEQ ID NO: 84: amino acid sequence of C320-120 LCDR2
SEQ ID NO: 85: amino acid sequence of C320-120 LCDR3
SEQ ID NO: 86: amino acid sequence of C320-129 VH
SEQ ID NO: 87: amino acid sequence of C320-129 HCDR1
ation] jxd
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SEQ ID NO: 88: amino acid sequence of C320-129 HCDR2
SEQ ID NO: 89: amino acid ce of C320-129 HCDR3
SEQ ID NO: 90: amino acid ce of C320-130 VH
SEQ ID NO: 91: amino acid sequence of C320-130 HCDRl
SEQ ID NO: 92: amino acid sequence of C320-130 HCDR2
SEQ ID NO: 93: amino acid sequence of C320-130 HCDR3
SEQ ID NO: 94: amino acid sequence of VH consensus sequence of C320 and
derivatives
SEQ ID NO: 95: amino acid sequence of VL consensus sequence of C320 and
derivatives
SEQ ID NO: 96: nucleotide sequence encoding VH of C336
SEQ ID NO: 97: nucleotide sequence encoding VL of C336
SEQ ID NO: 98: nucleotide sequence encoding VH of C334
SEQ ID NO: 99: nucleotide sequence encoding VL of C334
SEQ ID NO: 100: nucleotide sequence ng VH of C333
SEQ ID NO: 101: nucleotide sequence encoding VL of C333
SEQ ID NO: 102: nucleotide sequence encoding VH of C323
SEQ ID NO: 103: nucleotide sequence encoding VL of C323
SEQ ID NO: 104: nucleotide sequence ng VH of C321
SEQ ID NO: 105: nucleotide sequence encoding VL of C321
SEQ ID NO: 106: nucleotide sequence encoding VH of C320
SEQ ID NO: 107: nucleotide sequence encoding VL of C320
SEQ ID NO: 108: tide sequence encoding VH of C319
SEQ ID NO: 109: nucleotide ce encoding VL of C319
SEQ ID NO: 110: nucleotide sequence encoding VH of C320-3
SEQ ID NO: 111: nucleotide sequence encoding VL of C320-5
SEQ ID NO: 112: nucleotide sequence encoding VH of C320-90
SEQ ID NO: 113: nucleotide sequence encoding VH of C320-103
SEQ ID NO: 114: nucleotide sequence encoding VH of 14
SEQ ID NO: 115: nucleotide sequence encoding VH of 15
SEQ ID NO: 116: tide sequence encoding VL of C320-120
SEQ ID NO: 117: nucleotide sequence ng VH of C320-129
SEQ ID NO: 118: nucleotide sequence encoding VH of C320-130
SEQ ID NO: 119: amino acid sequence of VH of humanized antibody 1B4
SEQ ID NO: 120: amino acid sequence of VL of humanized antibody 1B4
SEQ ID NO: 121: nucleotide sequence encoding VH of humanized antibody 1B4
SEQ ID NO: 122: nucleotide sequence encoding VL of humanized antibody 1B4
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SEQ ID NO: 123: amino acid sequence of human TL1a (derived from GenBank Gene
accession no 9966 as of 8 May 2011)
SEQ ID NO: 124: amino acid sequence of mouse TL1a Extracellular Domain
SEQ ID NO: 125: amino acid sequence of cynomolgus/Rhesus TL1a Extracellular
Domain
SEQ ID NO: 126: amino acid sequence of rat TL1a ellular Domain
SEQ ID NO: 127: amino acid ce of rabbit TL1a Extracellular Domain
SEQ ID NO: 128: amino acid sequence of guinea Pig TL1a Extracellular Domain
SEQ ID NO: 129: amino acid sequence of human Death Receptor 3 (derived from
Genbank Gene Accession No. 8718 as of 8 May 2011)
SEQ ID NO: 130: amino acid sequence of human Decoy Receptor 3 (derived from
Genbank Gene ion No. 8771 as of 8 May 2011)
SEQ ID NO: 131: sequence of region of TL1a
SEQ ID NO: 132: sequence of region of TL1a
SEQ ID NO: 133: sequence of region of TL1a
SEQ ID NO: 134: amino acid sequence of human IgG1 Fc region
SEQ ID NO: 135: amino acid sequence of human kappa constant region
SEQ ID l\O: 136: amino acid sequence of human lambda constant region.
SEQ ID NO: 137: amino acid sequence of VH consensus sequence of C320 and
derivatives
SEQ ID NO: 138: amino acid sequence of VL sus sequence of C320 and
derivatives
SEQ ID NO 139: amino acid sequence of LCDRl consensus sequence of C320 and
derivatives
SEQ ID NO 140: amino acid sequence of LCDR2 consensus sequence of C320 and
derivatives
SEQ ID NO 141: amino acid sequence of LCDR3 consensus sequence of C320 and
derivatives
SEQ ID NO 142: amino acid sequence of HCDR2 consensus sequence of C320 and
derivatives
SEQ ID NO 143: amino acid sequence of HCDR3 sus sequence of C320 and
derivatives
SEQ ID NO: 144: amino acid sequence of HFRl consensus ce of C320 and
derivatives
SEQ ID NO: 145: amino acid sequence of HFR2 sus sequence of C320 and
derivatives
SEQ ID NO: 146: amino acid sequence of HFR3 consensus sequence of C320 and
derivatives
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SEQ ID NO: 147: amino acid sequence of HFR4 consensus sequence of C320 and
derivatives
SEQ ID NO: 148: amino acid sequence of LFR1 consensus sequence of C320 and
derivatives
SEQ ID NO: 149: amino acid sequence of LFR2 consensus sequence of C320 and
derivatives
SEQ ID NO: 150: amino acid sequence of LFR3 consensus sequence of C320 and
derivatives
SEQ ID NO: 151: amino acid sequence of LFR4 consensus sequence of C320 and
derivatives
SEQ ID NO: 152: amino acid sequence of VH consensus sequence of C320 and
derivatives
SEQ ID NO: 153: amino acid sequence of VL sus sequence of C320 and
derivatives
SEQ ID NO: 154: amino acid sequence of V1 comprising CDRs from C320 grafted
onto FRs of antibody 1TZG.
SEQ ID NO: 155: amino acid sequence of V1 comprising CDRs from C320 grafted
onto FRs of antibody 1RHH.
SEQ ID NO: 156: amino acid sequence of V1 comprising CDRs from C320 grafted
onto FRs of antibody 2DD8.
SEQ ID NO: 157: amino acid sequence of V1 sing CDRs from C320 grafted
onto FRs of dy 2JB5.
SEQ ID NO: 158: amino acid sequence of V1 sing CDRs from C320 d
onto FRs of antibody 3FKU.
SEQ ID NO: 159: amino acid sequence of V1 comprising CDRs from C320 grafted
onto FRs of dy 3GBM.
SEQ ID NO: 160: amino acid sequence of V1 sing CDRs from C320 grafted
onto FRs of antibody 3LMJ.
SEQ ID NO: 161: amino acid sequence of V1 comprising CDRs from C320 grafted
onto FRs of antibody 3P30.
SEQ ID NO: 162: amino acid sequence of VH consensus ce of C320 and
derivatives
SEQ ID NO: 163: amino acid sequence of VL comprising CDRs from C320 grafted
onto FRs of antibody 1RHH.
SEQ ID NO: 164: amino acid sequence of VL comprising CDRs from C320 grafted
onto FRs of antibody 1TZGL.
SEQ ID NO: 165: amino acid sequence of VL comprising CDRs from C320 grafted
onto FRs of antibody 2DD8.
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SEQ ID NO: 166: amino acid ce of Vg comprising CDRs from C320 grafted
onto FRs of dy 2JB5.
SEQ ID NO: 167: amino acid sequence of Vg comprising CDRs from C320 grafted
onto FRs of antibody 3FKU.
SEQ ID NO: 168: amino acid sequence of Vg comprising CDRs from C320 grafted
onto FRs of antibody 3GBM.
SEQ ID NO: 169: amino acid sequence of Vg sing CDRs from C320 grafted
onto FRs of antibody 3LMJ.
SEQ ID NO: 170: amino acid sequence of Vg comprising CDRs from C320 grafted
onto FRs of antibody 3P30.
SEQ ID NO: 171: amino acid sequence of Vg comprising CDRs from C320 grafted
onto FRs of antibody 3IYW.
SEQ ID NO: 172: amino acid sequence of VL consensus ce of C320 and
derivatives
SEQ ID NO: 173: amino acid sequence of VH consensus sequence of C320 and
derivatives
SEQ ID NO: 174: amino acid sequence of VL consensus sequence of C320 and
derivatives
SEQ ID NO: 175: amino acid ce of VH of antibody C320-162
SEQ ID NO: 176: amino acid sequence of VH of antibody C320-163
SEQ ID NO: 177: amino acid sequence of VH of antibody 64
SEQ ID NO: 178: amino acid sequence of VH of antibody C320-165
SEQ ID NO: 179: amino acid sequence of VH of antibody C320-166
SEQ ID NO: 180: amino acid sequence of VH of antibody C320-167
SEQ ID NO: 181: amino acid sequence of VH of antibody C320-168
SEQ ID NO: 182: amino acid sequence of VH of antibody C320-169
SEQ ID NO: 183: amino acid sequence of VH of antibody C320-170
SEQ ID NO: 184: amino acid ce of VH of antibody C320-171
SEQ ID NO: 185: amino acid sequence of VH of antibody C320-172
SEQ ID NO: 186: amino acid sequence of VH of antibody C320-179
SEQ ID NO: 187: amino acid sequence of VH of antibody C320-183
SEQ ID NO: 188: amino acid sequence of VL of dy C320-162
SEQ ID NO: 189: amino acid sequence of VL of antibody C320-163
SEQ ID NO: 190: amino acid sequence of VL of antibody 64
SEQ ID NO: 191: amino acid sequence of VL of antibody C320-165
SEQ ID NO: 192: amino acid ce of VL of antibody C320-166
SEQ ID NO: 193: amino acid sequence of VL of antibody C320-167
SEQ ID NO: 194: amino acid sequence of VL of antibody C320-168
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SEQ ID NO: 195: amino acid sequence of VL of antibody C320-169
SEQ ID NO: 196: amino acid sequence of VL of antibody C320-170
SEQ ID NO: 197: amino acid sequence of VL of antibody C320-171
SEQ ID NO: 198: amino acid sequence of VL of antibody C320-172
SEQ ID NO: 199: amino acid sequence of VL of antibody C320-179
SEQ ID NO: 200: amino acid sequence of VL of antibody C320-183
SEQ ID NO: 201: amino acid sequence of VL of germline sequence IGLV1-40*l
SEQ ID NO: 202: amino acid sequence of soluble human TL1a
SEQ ID NO: 203: amino acid sequence of N-linked glycosylation site in VH of C320
SEQ ID NO: 204: amino acid sequence from VH of 1TZG corresponding to N-linked
glycosylation site in VH of C320
SEQ ID NO: 205: amino acid sequence of peptide from VH of C320-168
SEQ ID NO: 206: amino acid sequence of peptide from VL of C320-168
SEQ ID NO: 207: amino acid sequence of influenza peptide
SEQ ID NO: 208: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 209: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 210: amino acid sequence of mutant e from VL of C320-168
SEQ ID NO: 211: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 212: amino acid ce of mutant peptide from VL of C320-168
SEQ ID NO: 213: amino acid sequence of mutant peptide from VL of 68
SEQ ID NO: 214: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 215: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 216: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 217: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 218: amino acid ce of mutant peptide from VL of C320-168
SEQ ID NO: 219: amino acid ce of mutant e from VL of C320-168
SEQ ID NO: 220: amino acid sequence of mutant e from VL of C320-168
SEQ ID NO: 221: amino acid sequence of mutant peptide from VL of C320-168
SEQ ID NO: 222: nucleotide sequence encoding VH of antibody 62
SEQ ID NO: 223: nucleotide sequence encoding VH of antibody C320- 163
SEQ ID NO: 224: nucleotide sequence encoding VH of dies C320- 164 C320-
165, C320-166 and C320-167
SEQ ID NO: 225: nucleotide sequence encoding VH of antibodies 68 and C320-
SEQ ID NO: 226: nucleotide sequence encoding VH of antibodies 70 and C320-
SEQ ID NO: 227: nucleotide sequence encoding VH of antibodies C320-179 and C320-
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SEQ ID NO: 228: nucleotide sequence encoding VL of antibodies C320-162, C320-
163, C320-167 and C320-169
SEQ ID NO: 229: nucleotide sequence encoding VL of antibody C320-164
SEQ ID NO: 230: nucleotide ce encoding VL of antibodies C320-165, C320-168
and C320-170
SEQ ID NO: 231: nucleotide sequence encoding VL of antibody C320-166
SEQ ID NO: 232: nucleotide sequence encoding VL of antibodies C320-172 and C320-
SEQ ID NO: 233: nucleotide ce encoding VL of antibody C320-183
SEQ ID NO: 234: amino acid sequence of C320-13 and C320-22
SEQ ID NO: 235: amino acid sequence of consensus of HCDR3 of C320 and
derivatives
Selected Definitions
For the purposes of nomenclature and not tion the amino acid sequence of
human TLla is set forth in SEQ ID NO: 123. onal sequences of human TLla are
set out in Genbank Gene Accession No. 9966. Accordingly, in one example, the amino
acid sequence of human TLla comprises a ce set forth in SEQ ID NO: 123.
Other isoforms of TLla have been described: 72-251 (Position 72 to 251of SEQ ID No:
123), 84-251 (Position 84 to 251 of SEQ ID No: 123); 101-251 or VEGI—174 (Position
101 to 251 of SEQ ID No: 123) and 86-251 or VEGI—192 (Position 86 to 251 in SEQ
ID No: 123). The sequences of the extracellular domain of TL1a from various species
are set forth in SEQ ID NO: 1 (amino acids 16 to 184; human), SEQ ID NO: 124
(mouse), SEQ ID NO: 125 (cynomolgus/rhesus monkey), SEQ ID NO: 126 (rat), SEQ
ID NO: 127 (rabbit) and SEQ ID NO: 128 (guinea pig). TLla generally forms a
homotrimer in a subject and signals through DR3. Exemplary TLla-binding proteins
of the disclosure bind to or bind specifically to human TL1a (abbreviated herein as
human TLla), ing inant forms thereof.
For the purposes of nomenclature and not limitation, a sequence of a human
DR3 is set forth in SEQ ID NO: 129. Additional sequences of human DR3 are set out
in Genbank Gene Accession No. 8718. In one example, DR3 encompassed by the
present disclosure is human DR3 comprising a ce set forth in SEQ ID NO: 129.
For the purposes of nomenclature and not limitation, a sequence of a human
DcR3 is set forth in SEQ ID NO: 130. Additional ces of human DcR3 are set
out in k Gene Accession No. 8771. In one example, DcR3 encompassed by the
present disclosure is human DcR3 comprising a sequence set forth in SEQ ID NO: 130.
The term “isolated n” or “isolated polypeptide” is intended to mean a
n or polypeptide that by virtue of its origin or source of derivation is not
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ated with naturally-associated components that any it in its native state; is
substantially free of other proteins from the same source. A protein may be rendered
substantially free of naturally associated components or substantially purified by
isolation, using protein purification techniques known in the art. By “substantially
purified” is meant the protein is substantially free of contaminating agents, e. g., at least
about 70% or 75% or 80% or 85% or 90% or 95% or 96% or 97% or 98% or 99% free
of contaminating agents.
The term “recombinant” shall be understood to mean the product of artificial
genetic recombination. Accordingly, in the context of a recombinant protein
comprising an antigen binding domain, this term does not encompass an antibody
lly-occurring within a subject’s body that is the product of natural recombination
that occurs during B cell maturation. However, if such an antibody is isolated, it is to
be considered an isolated protein comprising an antigen binding domain. Similarly, if
nucleic acid encoding the protein is ed and expressed using recombinant means,
the resulting protein is a recombinant protein sing an antibody antigen binding
domain. A recombinant protein also encompasses a protein expressed by artificial
inant means when it is within a cell, tissue or subject, e.g., in which it is
expressed.
The term binding n” shall be taken to include a single polypeptide
chain (i.e., a series of contiguous amino acids linked by peptide bonds), or a series of
polypeptide chains covalently or non-covalently linked to one another (i.e., a
polypeptide complex) capable of binding to TLla in the manner described and/or
claimed herein. For example, the series of ptide chains can be covalently linked
using a le chemical or a disulphide bond. es of non-covalent bonds
include hydrogen bonds, ionic bonds, Van der Waals forces, and hydrophobic
interactions.
The term “polypeptide” or “polypeptide chain” will be understood from the
foregoing paragraph to mean a series of contiguous amino acids linked by peptide
bonds.
As used herein, the term “antigen binding domain” shall be taken to mean a
region of an antibody that is capable of specifically binding to an antigen, i.e., a VH or a
VL or an Fv sing both a VH and a VL. The antigen binding domain need not be
in the context of an entire dy, e. g., it can be in isolation (e.g., a domain antibody)
or in another form, e. g., as described , such as a scFv.
For the purposes for the present disclosure, the term “antibody” includes a protein
e of specifically binding to one or a few closely related antigens (e. g., TLla) by
virtue of an antigen binding domain contained within a Fv. This term includes four
chain antibodies (e. g., two light chains and two heavy chains), recombinant or modified
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antibodies (e. g., chimeric antibodies, humanized antibodies, human antibodies, CDR-
grafted dies, primatized antibodies, de-immunized antibodies, anized
antibodies, ntibodies, bispecific antibodies). An antibody generally comprises
constant s, which can be arranged into a constant region or constant fragment or
fragment crystallizable (Fc). Exemplary forms of antibodies comprise a four-chain
structure as their basic unit. ength antibodies comprise two heavy chains (~50 to
70 kD) covalently linked and two light chains (~23 kDa each). A light chain generally
comprises a variable region (if present) and a constant domain and in mammals is
either a K light chain or a X light chain. A heavy chain generally comprises a variable
region and one or two constant domain(s) linked by a hinge region to additional
constant domain(s). Heavy chains of mammals are of one of the following types 0t, 6, a,
y, or u. Each light chain is also covalently linked to one of the heavy chains. For
example, the two heavy chains and the heavy and light chains are held together by
inter-chain ide bonds and by valent interactions. The number of inter-chain
ide bonds can vary among ent types of antibodies. Each chain has an N-
terminal variable region (VH or VL wherein each are ~110 amino acids in length) and
one or more constant domains at the C- terminus. The constant domain of the light
chain (CL which is ~110 amino acids in length) is aligned with and disulfide bonded to
the first constant domain of the heavy chain (CH1 which is 330 to 440 amino acids in
length). The light chain variable region is aligned with the variable region of the heavy
chain. The antibody heavy chain can comprise 2 or more onal CH domains (such
as, CH2, CH3 and the like) and can comprise a hinge region between the CH1 and CH2
constant domains. Antibodies can be of any type (e. g., IgG, IgE, IgM, IgD, IgA, and
IgY), class (e.g., IgGl, Ing, IgG3, IgG4, IgA1 and IgAz) or subclass. In one example,
the antibody is a murine (mouse or rat) antibody or a primate (such as, human)
antibody. In one example the antibody heavy chain is missing a C—terminal lysine
residue. In one example, the antibody is humanized, synhumanized, chimeric, CDR-
grafted or nized.
As used herein, “variable region” refers to the portions of the light and/or heavy
chains of an antibody as defined herein that is capable of specifically binding to an
antigen and, includes amino acid sequences of complementarity determining regions
(CDRs); i.e., CDRl, CDR2, and CDR3, and framework regions (FRs). For e, the
variable region comprises three or four FRs (e. g., FRI, FR2, FR3 and optionally FR4)
together with three CDRs. VH refers to the variable region of the heavy chain. VL refers
to the variable region of the light chain.
As used , the term “complementarity determining regions” (syn. CDRs;
i.e., CDRl, CDR2, and CDR3) refers to the amino acid es of an antibody variable
region the presence of which are major contributors to specific n binding. Each
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variable region domain (VH or VL) typically has three CDR regions identified as CDRl,
CDR2 and CDR3. In one example, the amino acid positions assigned to CDRs and FRs
are defined according to Kabat Sequences of Proteins of Immunological Interest,
National Institutes of Health, Bethesda, Md., 1987 and 1991 (also referred to herein as
“the Kabat numbering system”). In r e, the amino acid positions assigned
to CDRs and FRs are d according to the Enhanced a Numbering Scheme
(http://www.bioinfo.org.ul</mdex.html). According to the numbering system of Kabat,
VH FRs and CDRs are positioned as follows: residues 1 to 30 (FRI), 31 to 35 (CDRl),
36 to 49 (FR2), 50 to 65 (CDR2), 66 to 94 (FR3), 95 to 102 (CDR3) and 103 to 113
(FR4). According to the numbering system of Kabat, VL FRs and CDRs are positioned
as follows: residues 1 to 23 (FRI), 24 to 34 (CDRl), 35 to 49 (FR2), 50 to 56 (CDR2),
57 to 88 (FR3), 89 to 97 (CDR3) and 98 to 107 (FR4). The present disclosure is not
limited to FRs and CDRs as defined by the Kabat numbering system, but includes all
ing systems, including the canonical numbering system or of Chothia and Lesk
J. Mol. Biol. 196: 901-917, 1987; Chothia et al., Nature 342: 877-883, 1989; and/or Al-
Lazikani et al., J. Mol. Biol. 273: 927-948, 1997; the numbering system of Honnegher
and Plukthun J. Mol. Biol. 309: 657-670, 2001; or the IMGT system discussed in
Giudicelli et al., Nucleic Acids Res. 25: 206-211 1997. In one e, the CDRs are
defined ing to the Kabat numbering system. Optionally, heavy chain CDR2
according to the Kabat numbering system does not comprise the five C-terminal amino
acids listed herein or any one or more of those amino acids are substituted with another
naturally-occurring amino acid. In an onal, or alternative, option, light chain
CDRl does not comprise the four inal amino acids listed herein or any one or
more of those amino acids are substituted with r naturally-occurring amino acid.
In this , Padlan et al., FASEB J., 9: 133-139, 1995 established that the five C-
terminal amino acids of heavy chain CDR2 and/or the four N-terminal amino acids of
light chain CDRl are not generally involved in antigen binding.
“Framework s” (FRs) are those variable region residues other than the
CDR residues.
As used herein, the term “Fv” shall be taken to mean any protein, whether
comprised of multiple polypeptides or a single polypeptide, in which a VL and a VH
associate and form a complex having an antigen g domain, i.e., capable of
specifically binding to an antigen. The VH and the VL which form the antigen binding
domain can be in a single polypeptide chain or in different polypeptide chains.
Furthermore, an Fv of the sure (as well as any protein of the disclosure) may have
multiple antigen binding domains which may or may not bind the same antigen. This
term shall be understood to encompass fragments directly derived from an antibody as
well as proteins corresponding to such a fragment produced using recombinant means.
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In some examples, the VH is not linked to a heavy chain constant domain (CH) 1 and/or
the VL is not linked to a light chain nt domain (CL). Exemplary Fv containing
polypeptides or proteins include a Fab fragment, a Fab’ nt, a F(ab’) fragment, a
scFv, a diabody, a triabody, a tetrabody or higher order complex, or any of the
foregoing linked to a nt region or domain thereof, e.g., CH2 or CH3 domain, e. g.,
a minibody. A “Fab fragment” consists of a monovalent antigen-binding fragment of an
antibody, and can be produced by digestion of a whole antibody with the enzyme
papain, to yield a nt consisting of an intact light chain and a portion of a heavy
chain or can be produced using recombinant means. A “Fab’ nt” of an antibody
can be obtained by treating a whole antibody with pepsin, ed by reduction, to
yield a molecule consisting of an intact light chain and a portion of a heavy chain
comprising a VH and a single constant domain. Two Fab' fragments are obtained per
dy treated in this manner. A Fab’ fragment can also be produced by recombinant
means. A “F(ab')2 fragment” of an antibody consists of a dimer of two Fab‘ fragments
held er by two disulfide bonds, and is obtained by treating a whole antibody
molecule with the enzyme pepsin, without subsequent reduction. A “Fabz” fragment is
a recombinant fragment comprising two Fab fragments linked using, for e a
leucine zipper or a CH3 domain. A “single chain Fv” or “scFv” is a recombinant
molecule containing the variable region fragment (Fv) of an antibody in which the
variable region of the light chain and the variable region of the heavy chain are
covalently linked by a suitable, flexible polypeptide linker.
As used , the term “binds” in reference to the interaction of a TLla-
binding protein or an antigen binding domain thereof with an antigen means that the
interaction is dependent upon the presence of a ular structure (e. g., an antigenic
determinant or e) on the antigen. For example, an antibody recognizes and binds
to a specific protein structure rather than to proteins generally. If an antibody binds to
epitope “A”, the presence of a molecule containing epitope “A” (or free, unlabeled
“A”), in a reaction containing labeled “A” and the antibody, will reduce the amount of
labeled “A” bound to the antibody.
As used herein, the term “specifically binds” or “binds ically” shall be
taken to mean that a protein of the disclosure reacts or associates more frequently, more
y, with greater duration and/or with greater affinity with a particular antigen or
cell sing same than it does with alternative antigens or cells. For e, a
n that specifically binds to an antigen binds that antigen with greater ty,
avidity, more readily, and/or with greater duration than it binds to other antigens. For
example, a protein binds to TLla (e.g., human TLla) with materially greater affinity
than it does to other TNF superfamily ligands or to antigens commonly recognized by
polyreactive natural antibodies (i.e., by naturally occurring antibodies known to bind a
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variety of antigens naturally found in humans). It is also understood by reading this
definition that, for example, a protein that specifically binds to a first antigen may or
may not ically bind to a second antigen. As such, “specific binding” does not
necessarily require exclusive binding or non-detectable binding of another antigen, this
is meant by the term “selective binding”. In one e, “specific g” of a TLla-
binding protein of the disclosure to an antigen, means that the protein binds to the
antigen with an brium constant (KD) of lOOnM or less, such as 50nM or less, for
example 20nM or less, such as, 15nM or less or lOnM or less or 5nM or less.
As used herein, the term “does not detectably bind” shall be understood to mean
that a TLla-binding protein, e. g., an dy, binds to a candidate antigen at a level
less than 20%, or 10% or 6% or 5% above background. The background can be the
level of binding signal detected in the absence of the TLla-binding protein and/or in
the presence of a negative control protein (e. g., an isotype control antibody) and/or the
level of binding detected in the presence of a negative control n. The level of
binding is detected, for example, using ELISA in which the antigen is immobilized and
contacted with a TLla-binding protein.
As used herein, the term “epitope” (syn. “antigenic determinant”) shall be
understood to mean a region of TLla to which a protein comprising an antigen binding
domain of an antibody binds. This term is not necessarily limited to the specific
residues or structure to which the protein makes contact. For e, this term
includes the region spanning amino acids ted by the protein and/or at least 5 to
or 2 to 5 or 1 to 3 amino acids outside of this region. In some examples, the epitope
is a linear series amino acids. An epitope may also comprise a series of tinuous
amino acids that are oned close to one another when TLla is folded, i.e., a
“conformational epitope”. The skilled artisan will also be aware that the term
pe” is not limited to peptides or ptides. For example, the term “epitope”
includes chemically active surface groupings of molecules such as sugar side chains,
phosphoryl side chains, or sulfonyl side chains, and, in certain examples, may have
specific three dimensional structural characteristics, and/or specific charge
characteristics. An epitope or peptide or polypeptide comprising same can be
administered to an animal to generate antibodies against the epitope.
As used herein, the term “inhibits interaction of TLla and DR3” shall be
understood to mean that in an assay to measure binding of TLla and DR3, a protein is
capable of ting 50% of g (i.e., has an ECso) of less than about l3nM, for
example, less than about lOnM, such as less than about 7nM, e. g., less than about 5nM,
for example, less than about 3nM.
As used herein, the term “does not inhibit interaction of TLla and DcR3” will
be understood to mean that a TLla-binding protein described herein does not inhibit
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interaction of TLla and DcR3 (i.e., such that interaction is no longer detectable, e. g.,
using an ELISA assay described ). For example, at a concentration of 100ug/ml,
the protein does not completely inhibit interaction of TLla and DcR3. In some
examples, the protein reduces the interaction of TLla and DcR3 by less than about 20%
or 15% or 10%, e. g., when tested at a concentration of lOug/ml or 100ug/ml.
As used herein, the term “does not detectably reduce” shall be understood to
mean that a protein as described herein s binding of TLla (or a biotinylated form
thereof) to DcR3 by no more than 20% or 8% or 6% or 5% or 4% or 3% or 2% above
the level of interaction in the absence of the n or above the level of background
interaction, When tested at a concentration of 10ug/ml or 100ug/ml. The background
can be the level of binding signal detected in the absence of the protein and/or in the
presence of a negative control protein (e.g., an isotype control antibody).
As used herein, the term “neutralize” shall be taken to mean that a TLla-binding
n is capable of reducing or preventing TLla-mediated activity in a cell. Methods
for determining neutralization are known in the art and/or bed . For
example, TF—l cells are contacted With TLla, such as human TLla (e.g., expressed by a
mammalian cell) and cycloheximide in the presence or absence of the TLla-binding
protein. A inding protein that reduces the level of apoptosis of the cells
ed to the level in the absence of the protein is considered to “neutralize” TLla
activity.
As used herein, the term “condition” refers to a disruption of or interference
with normal function, and is not to be limited to any specific condition, and will e
es or disorders.
As used herein, a “TLla-associated condition” refers to any condition that is
caused by or associated with TLla or a cell expressing TLla. The skilled artisan will
be readily able to determine such ions based on the disclosure herein and/or by
performing an assay to diagnose a TLla-associated condition as bed herein. In
this regard, in some examples the condition is an inflammatory condition, an
autoimmune condition and a condition that can be treated by enhancing angiogenesis.
A description of exemplary ions is included herein.
As used herein, the terms “preventing”, “prevent” or “prevention” include
administering a protein of the disclosure to thereby stop or hinder the development of at
least one symptom of a condition. This term also encompasses treatment of a subject in
remission to prevent or hinder relapse. For example, a subject suffering from
relapsing-remitting multiple sclerosis is treated during remission to thereby prevent a
relapse.
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As used herein, the terms “treating”, ” or “treatment” include
administering a protein bed herein to thereby reduce or eliminate at least one
symptom of a specified disease or ion.
As used herein, the term “subject” shall be taken to mean any animal, such as, a
mammal. In one e, the mammal is a human or non-human primate. In one
example, the mammal is a human.
Reference herein to a “sample” should be understood as a reference to any
sample derived from a subject such as, but not limited to, a body fluid (e.g., blood or
blood fraction such as serum or plasma, tears, urine, synovial fluid or cerebrospinal
fluid), cellular material (e. g. tissue te), tissue biopsy specimens or al
ens. In some examples, the “sample” is any one or more of serum, plasma,
PBMCs, or a buffy coat on.
As used herein, the term “diagnosis”, and variants thereof such as, but not
limited to, ose”, “diagnosed” or “diagnosing” includes any primary diagnosis of
a clinical state or diagnosis of recurrent disease.
“Prognosis”, “prognosing” and variants thereof as used herein refer to the likely
outcome or course of a disease, including the chance of recovery or recurrence or the
outcome of treatment.
The term “expression construct” is to be taken in its broadest context and
includes a nucleic acid comprising one or more promoter sequences ly linked
with one or more nucleic acids as described .
The term “expression vector” refers to a nucleic acid comprising an expression
construct that is additionally capable of maintaining and or replicating nucleic acid in
an expressible format. For example, an expression vector may comprise a plasmid,
bacteriophage, phagemid, cosmid, virus sub-genomic or genomic nt. Selection
of appropriate vectors is within the knowledge of those having skill in the art.
As used herein, the term “promoter” is to be taken in its broadest context and
includes the transcriptional regulatory sequences of a c gene, including the
TATA box or initiator element, which is required for accurate transcription initiation,
with or without additional regulatory elements (e.g., upstream activating sequences,
transcription factor binding sites, enhancers and silencers) that alter expression of a
nucleic acid, e. g., in response to a developmental and/or external stimulus, or in a tissue
specific manner. In the present t, the term “promoter” is also used to describe a
recombinant, tic or fusion nucleic acid, or derivative which confers, activates or
enhances the expression of a nucleic acid to which it is operably linked. An exemplary
promoter can contain additional copies of one or more specific regulatory elements to
further enhance sion and/or alter the spatial expression and/or temporal
expression of said nucleic acid.
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As used herein, the term “operably linked to” means positioning a promoter
relative to a nucleic acid such that expression of the nucleic acid is controlled by the
er. A promoter can be operably linked to numerous nucleic acids, e. g., through
an internal me entry site.
Proteins Comprising Antibody Antigen Binding Domains
Antibodies
Immunization-Based Methods
To generate antibodies, TLla or an epitope bearing fragment or portion thereof
or a modified form f (e. g., a fusion protein comprising a human epitope within a
mouse TLla protein) or nucleic acid ng same, optionally formulated with any
suitable or desired adjuvant and/or pharmaceutically acceptable carrier, is administered
to a subject (for example, a non-human animal subject, such as, a mouse, a rat, a
chicken etc.) in the form of an injectable composition. Exemplary non-human animals
are s, such as murine animals (e.g., rats or mice). Injection may be intranasal,
intramuscular, sub-cutaneous, intravenous, intradermal, intraperitoneal, or by other
known route. Optionally, the TLla or epitope bearing fragment or portion thereof or a
nucleic acid encoding same is administered us times. Means for preparing and
characterizing antibodies are known in the art (See, e. g., Antibodies: A Laboratory
Manual, Cold Spring Harbor Laboratory, 1988).
The tion of polyclonal antibodies may be monitored by sampling blood of
the immunized animal at various points ing immunization. A second, booster
injection, may be given, if required to achieve a desired antibody titer. The process of
ng and titering is repeated until a suitable titer is achieved. When a desired level
of immunogenicity is obtained, the immunized animal is bled and the serum isolated
and stored, and/or the animal is used to generate monoclonal antibodies (mAbs).
Monoclonal antibodies are exemplary antibodies contemplated by the present
disclosure. lly, production of monoclonal antibodies involves, immunizing a
subject (e. g., a rodent, e. g., mouse or rat) with TLla or an epitope bearing fragment or
portion thereof or a nucleic acid encoding same under conditions ient to stimulate
antibody producing cells. In some examples, a mouse genetically-engineered to express
human immunoglobulin ns and not express murine immunoglobulin proteins, is
immunized to produce an antibody (e.g., as described in PCT/U82007/008231 and/or
Lonberg et al., Nature 368: 856-859, 1994). Following zation, dy
producing c cells (e. g., B lymphocytes) are fused with immortal cells, e.g.,
immortal myeloma cells. Various s for producing such fused cells (hybridomas)
are known in the art and described, for example, in Kohler and Milstein, Nature 256:
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495-497, 1975. The hybridoma cells can then be cultured under conditions sufficient
for dy production.
The t disclosure contemplates other methods for producing antibodies,
e.g., ABL-MYC technology (as described, for e in Largaespada et al., Curr.
Top. Microbiol. Immunol, 166: 91-96, 1990).
Suitable antibodies are then selected based on methods described herein.
Library-Based Methods
The present disclosure also encompasses screening of libraries of antibodies or
proteins comprising antigen binding domains thereof (e. g., sing variable regions
thereof) to identify a TLla-binding protein of the disclosure.
Examples of libraries contemplated by this disclosure include naive libraries
(from unchallenged subjects), immunized libraries (from ts immunized with an
antigen) or synthetic libraries. Nucleic acid encoding antibodies or s thereof (e. g.,
variable regions) are cloned by conventional techniques (e. g., as disclosed in Sambrook
and l, eds, Molecular Cloning: A Laboratory Manual, 3rd Ed, vols. 1-3, Cold
Spring Harbor Laboratory Press, 2001) and used to encode and y proteins using a
method known in the art. Other ques for producing libraries of proteins are
described in, for example in US6300064 (e.g., a HuCAL library of Morphosys AG);
US5885793; US6204023; US6291158; or 516.
The TLla-binding proteins ing to the disclosure may be soluble secreted
proteins or may be presented as a fusion protein on the surface of a cell, or particle
(e. g., a phage or other virus, a ribosome or a spore). Various display library formats are
known in the art. For example, the library is an in vitro display library (e.g., a
ribosome display y, a covalent display library or a mRNA display library, e.g., as
described in US7270969). In yet another example, the display library is a phage display
library wherein proteins comprising antigen binding domains of antibodies are
expressed on phage, e.g., as described in US6300064; US5885793; US6204023;
US6291158; or US6248516. Other phage display methods are known in the art and are
plated by the present disclosure. Similarly, methods of cell display are
contemplated by the disclosure, e.g., bacterial display libraries, e.g., as described in
US5516637; yeast display libraries, e.g., as described in US6423538 or a mammalian
display library.
Methods for screening display libraries are known in the art. In one example, a
display library of the t disclosure is screened using affinity purification, e.g., as
described in Scopes (In: Protein cation: principles and practice, Third Edition,
Springer Verlag, 1994). Methods of affinity purification typically involve contacting
proteins comprising antigen binding domains yed by the library with a target
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antigen (e.g., TLla) and, following g, eluting those domains that remain bound
to the n.
Any variable regions or scFvs identified by screening are readily modified into a
te antibody, if d. Exemplary methods for modifying or reformatting
variable regions or scFvs into a complete antibody are described, for example, in Jones
et al., J. Immunol. Methods 354: 85-90, 2010; or Jostock et al., J. Immunol. Methods,
289: 65-80, 2004. Alternatively, or additionally, standard cloning methods are used,
e. g., as described in Ausubel et al., (In: Current ols in Molecular Biology. Wiley
Interscience, ISBN 047 150338, 1987), and/or ook et al., (In: Molecular
Cloning: Molecular g: A Laboratory Manual, Cold Spring Harbor Laboratories,
New York, Third Edition 2001).
nized, Chimeric. CDR Grafted, Humanized, anized, Primatized,
Human and Composite TLla-Binding Proteins
The TLla-binding proteins of the present disclosure may be CDR grafted
proteins which include CDRs from an antibody from a non-human species (e. g., mouse
or rat or non-human primate) grafted onto or inserted into FRs from a human antibody
or which e CDRs from an dy from one type of antibody (e. g., one type of
human antibody) grafted onto or inserted into FRs from r type of antibody (e. g.,
another type of human antibody). This term also encompasses a composite protein
comprising, for example, one or more CDR grafted variable regions and one or more,
e. g., human variable regions, chimeric variable regions, synhumanized variable regions
or primatized variable regions. Such proteins are exemplified herein by the antibodies
designated C320-l6 to 3.
The TLla-binding proteins of the present disclosure may be a humanized
The term ized protein” shall be understood to refer to a protein
comprising a human-like variable region, which includes CDRs from an antibody from
a non-human species (e.g., mouse or rat or non-human primate) grafted onto or inserted
into FRs from a human antibody (this type of antibody is also referred to as a “CDR-
grafted antibody”). Humanized proteins also include proteins in which one or more
residues of the human protein are modified by one or more amino acid tutions
and/or one or more FR es of the human protein are replaced by corresponding
non-human es. Humanized proteins may also comprise residues which are found
in neither the human antibody or in the non-human antibody. Any additional regions of
the protein (e. g., Fc region) are generally human. Humanization can be performed
using a method known in the art, e.g., US5225539, US6054297, US7566771 or
US5585089. The term “humanized protein” also encompasses a super-humanized
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protein, e.g., as described in US7732578. This term also encompasses a composite
protein sing, for example, one or more humanized variable regions and one or
more, e.g., human variable regions, chimeric le regions, synhumanized variable
s or primatized le regions.
In one example, a humanized TLla-binding protein ses the regions
between 27d and 34, 50 and 55, and 89 and 96 in a light chain sequence disclosed
herein; and 31 and 35b, 50 and 58, and 95 and 101 in a heavy chain sequence disclosed
herein (numbering according to the Kabat numbering system). In this regard, Padlan et
al., FASEB J., 9: 133-139, 1995 presents evidence that these regions are those most
likely to bind or t antigen.
The TLla-binding proteins of the present disclosure may be human proteins.
The term “human protein” as used herein refers to proteins having variable and,
ally, constant antibody s found in humans, e.g. in the human germline or
somatic cells or from libraries produced using such regions. The “human” antibodies
can include amino acid es not encoded by human sequences, e.g. mutations
introduced by random or site directed mutations in vitro (in particular mutations which
involve conservative substitutions or mutations in a small number of residues of the
n, e.g. in 1, 2, 3, 4 or 5 of the es of the protein). These “human antibodies”
do not necessarily need to be generated as a result of an immune response of a human,
rather, they can be generated using recombinant means (e. g., ing a phage display
library) and/or by a transgenic animal (e. g., a mouse) comprising nucleic acid encoding
human antibody constant and/or variable regions and/or using guided selection (e. g., as
described in US5565332). This term also encompasses affinity matured forms of such
antibodies. For the purposes of the present disclosure, a human protein will also be
considered to include a protein comprising FRs from a human antibody or FRs
comprising sequences from a sus sequence of human FRs and in which one or
more of the CDRs are random or semi-random, e.g., as described in 064 and/or
US6248516.
Exemplary human TLla-binding proteins are antibodies comprising the
following pairs of variable regions:
(i) a VH comprising a ce set forth in SEQ ID NO: 2 and a VL comprising a
sequence set forth in SEQ ID NO: 6;
(ii) a VH comprising a sequence set forth in SEQ ID NO: 10 and a VL comprising a
sequence set forth in SEQ ID NO: 14;
(iii) a VH comprising a sequence set forth in SEQ ID NO: 18 and a VL comprising a
sequence set forth in SEQ ID NO: 22;
(iv) a VH comprising a sequence set forth in SEQ ID NO: 26 and a VL comprising a
sequence set forth in SEQ ID NO: 30;
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(V) a VH comprising a sequence set forth in SEQ ID NO: 34 and a VL comprising a
sequence set forth in SEQ ID NO:38;
(vi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(vii) a VH sing a ce set forth in SEQ ID NO: 50 and a VL comprising a
sequence set forth in SEQ ID NO: 54;
(viii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(ix) a VH comprising a ce set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(x) a VH comprising a sequence set forth in SEQ ID NO: 66 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xi) a VH comprising a sequence set forth in SEQ ID NO: 70 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xii) a VH comprising a sequence set forth in SEQ ID NO: 74 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiii) a VH comprising a sequence set forth in SEQ ID NO: 78 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xiv) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
ce set forth in SEQ ID NO: 82;
(xv) a VH comprising a sequence set forth in SEQ ID NO: 86 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xvi) a VH comprising a ce set forth in SEQ ID NO: 90 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(xvii) a VH comprising a sequence set forth in SEQ ID NO: 58 and a VL comprising a
sequence set forth in SEQ ID NO: 62;
(xviii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising
a ce set forth in SEQ ID NO: 164;
(xix) a VH comprising a sequence set forth in SEQ ID NO: 155 and a VL comprising a
sequence set forth in SEQ ID NO: 163;
(xx) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 165;
(xxi) a VH comprising a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 166;
(xxii) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 167;
(xxiii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
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(XXiV) a VH comprising a sequence set forth in SEQ ID NO: 160 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(XXV) a VH comprising a sequence set forth in SEQ ID NO: 161 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
(XXVi) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(XXVii) a VH comprising a sequence set forth in SEQ ID NO: 154 and a VL comprising a
ce set forth in SEQ ID NO: 46;
(XXViii) a VH sing a sequence set forth in SEQ ID NO: 155 and a VL
sing a sequence set forth in SEQ ID NO: 46;
(xxix) a VH comprising a sequence set forth in SEQ ID NO: 156 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXX) a VH sing a sequence set forth in SEQ ID NO: 157 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(xxxi) a VH comprising a sequence set forth in SEQ ID NO: 158 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXii) a VH comprising a sequence set forth in SEQ ID NO: 159 and a VL sing a
sequence set forth in SEQ ID NO: 46;
(xxxiii) a VH comprising a ce set forth in SEQ ID NO: 160 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXiV) a VH comprising a ce set forth in SEQ ID NO: 161 and a VL
comprising a sequence set forth in SEQ ID NO: 46;
(XXXV) a VH comprising a sequence set forth in SEQ ID NO: 234 and a VL comprising a
sequence set forth in SEQ ID NO: 46;
(XXXVi) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 164;
(XXXVii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
sing a sequence set forth in SEQ ID NO: 165;
(XXXViii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 166;
) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL
comprising a sequence set forth in SEQ ID NO: 167;
(X1) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 168;
(Xli) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 169;
(Xlii) a VH comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 170;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(Xliii)a VH comprising a ce set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 171;
(XliV) a VH comprising a ce set forth in SEQ ID NO: 42 and a VL comprising a
sequence set forth in SEQ ID NO: 172;
(le) a VH comprising a sequence set forth in SEQ ID NO: 175 and a VL comprising a
sequence set forth in SEQ ID NO: 188;
(XlVi) a VH comprising a sequence set forth in SEQ ID NO: 176 and a VL comprising a
sequence set forth in SEQ ID NO: 189;
(XlVii) a VH comprising a sequence set forth in SEQ ID NO: 177 and a VL sing a
ce set forth in SEQ ID NO: 190;
(XlViii)a VH comprising a sequence set forth in SEQ ID NO: 178 and a VL comprising a
sequence set forth in SEQ ID NO: 191;
(Xlix) a VH comprising a sequence set forth in SEQ ID NO: 179 and a VL sing a
sequence set forth in SEQ ID NO: 192;
(l) a VH comprising a sequence set forth in SEQ ID NO: 180 and a VL comprising a
sequence set forth in SEQ ID NO: 193;
(li) a VH comprising a sequence set forth in SEQ ID NO: 181 and a VL comprising a
sequence set forth in SEQ ID NO: 194;
(hi) a VH comprising a sequence set forth in SEQ ID NO: 182 and a VL comprising a
sequence set forth in SEQ ID NO: 195;
(liii) a VH sing a sequence set forth in SEQ ID NO: 183 and a VL comprising a
sequence set forth in SEQ ID NO: 196;
(liV) a VH comprising a sequence set forth in SEQ ID NO: 184 and a VL comprising a
sequence set forth in SEQ ID NO: 197;
(lV) a VH sing a sequence set forth in SEQ ID NO: 185 and a VL comprising a
sequence set forth in SEQ ID NO: 198;
(lVi) a VH comprising a sequence set forth in SEQ ID NO: 186 and a VL comprising a
sequence set forth in SEQ ID NO: 199; or
(lVii) a VH comprising a sequence set forth in SEQ ID NO: 187 and a VL comprising a
sequence set forth in SEQ ID NO: 200.
Additional exemplary human TLla-binding proteins are antibodies comprising a
VH sing a sequence set forth in SEQ ID NO: 42 and a VL comprising a sequence
set forth in SEQ ID NO: 46, wherein the VH and/or VL comprise one or more of the
following substitutions or groups of substitutions:
(i) the VH comprises an alanine at position 16 of SEQ ID NO: 42;
(ii) the VH comprises an alanine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
ation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(iii) the VH comprises a serine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(iv) the VH ses a histidine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(V) the VH comprises a leucine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(vi) the VH comprises an aspartic acid at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(vii) the VH comprises a tyrosine at position 100 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(viii) the VH comprises a proline at position 100 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(ix) the VH comprises a glutamine at position 100 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(X) the VH ses a lysine at position 1 00 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xi) the VH comprises an alanine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xii) the VH comprises a serine at position 1 01 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xiii) the VH comprises a histidine at position 101 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xiv) the VH comprises a leucine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xv) the VH comprises an aspartic acid at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvi) the VH comprises a tyrosine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xvii) the VH comprises a glutamine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xviii) the VH comprises a lysine at position 101 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xix) the VH comprises an alanine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xx) the VH comprises a serine at position 1 02 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxi) the VH ses a histidine at on 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(xxii) the VH comprises a leucine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
) the VH comprises a tyrosine at on 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXiV) the VH comprises a proline at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXV) the VH comprises a glutamine at position 102 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(XXVi) the VH comprises a lysine at position 102 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXVii) the VH comprises an alanine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXViii) the VH comprises a serine at on 103 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(xxix) the VH comprises a histidine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXX) the VH comprises a leucine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(xxxi) the VH comprises an aspartic acid at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXii)the VH comprises a tyrosine at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxiii) the VH comprises a proline at position 103 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXiV) the VH comprises a glutamine at position 103 of SEQ ID NO: 42 and the
VL comprises a ine at position 76 of SEQ ID NO: 46;
(XXXV) the VH comprises a lysine at position 103 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(XXXVi) the VH ses a serine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XXXVii) the VH comprises a histidine at position 104 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
(XXXViii) the VH comprises a leucine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(xxxix) the VH ses an aspartic acid at position 104 of SEQ ID NO: 42 and
the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(X1) the VH comprises a tyrosine at position 104 of SEQ ID NO: 42 and the VL
ses a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
(Xli) the VH comprises a proline at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlii) the VH comprises a glutamine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(Xliii)the VH comprises a lysine at position 104 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XliV) the VH comprises an alanine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(le) the VH ses a ine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVi) the VH comprises a leucine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlVii) the VH comprises an aspartic acid at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(XlViii)the VH comprises a tyrosine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(Xlix) the VH comprises a e at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(1) the VH comprises a glutamine at position 105 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(11) the VH comprises a lysine at position 1 05 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(hi) the VH comprises an alanine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liii) the VH comprises a serine at position 1 07 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(liV) the VH comprises a histidine at on 107 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(1V) the VH comprises a leucine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVi) the VH comprises an aspartic acid at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
(lVii) the VH comprises a tyrosine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(lViii) the VH comprises a proline at position 107 of SEQ ID NO: 42 and the VL
comprises a ine at position 76 of SEQ ID NO: 46;
(lix) the VH ses a ine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at position 76 of SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
(1X) the VH comprises a lysine at position 107 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(lxi) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
ses an alanine at on 23 of SEQ ID NO: 46;
(lxii) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
ses an aspartic acid at position 28 of SEQ ID NO: 46;
(lxiii)the VH ses a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a tyrosine at position 33 of SEQ ID NO: 46;
(lxiv) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an aspartic acid at position 34 of SEQ ID NO: 46;
(lxv) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises an asparagine at position 53 of SEQ ID NO: 46;
(lxvi) the VH comprises a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 54 of SEQ ID NO: 46;
(lxvii) the VH comprises a threonine at on 41 of SEQ ID NO: 42 and the VL
comprises an e at position 82 of SEQ ID NO: 46;
(lxviii)the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 95 of SEQ ID NO: 46;
(lxix) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a serine at position 96 of SEQ ID NO: 46;
(lXX) the VH comprises a threonine at position 41 of SEQ ID NO: 42 and the VL
comprises a threonine at on 76 of SEQ ID NO: 46;
(lXXi) the VH comprises a serine at position 47 of SEQ ID NO: 42 and the VL comprises
a threonine at position 23 of SEQ ID NO: 46;
(lxxii) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73, an arginine at position 74 and a threonine at position 76 each
ve to SEQ ID NO: 42 and the VL comprises a threonine at position 76 of SEQ ID
NO: 46;
(lxxiii) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a serine at
position 24 and a threonine at position 76 each ve to SEQ ID NO: 46;
(lXXiv) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL ses a threonine
at position 23, a serine at position 24 and a threonine at position 76 each relative to
SEQ ID NO: 46;
(lxxv) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 23 and a threonine at position 76 each relative to SEQ ID NO: 46;
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
) the VH comprises a proline at position 41, a leucine at position 51 and a glutamic
acid at position 102 each relative to SEQ ID NO: 42 and the VL comprises a threonine
at position 76 of SEQ ID NO: 46;
(lxxvii) the VH comprises a proline at position 41, a leucine at on 51, a
glutamic acid at position 102 and an e at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 23, a serine at position 24 and a
threonine at position 76 each relative to SEQ ID NO: 46;
(lxxviii) the VH ses a proline at position 41, a e at position 51, a
glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises a threonine at position 76 of SEQ ID NO: 46;
(lXXiX) the VH comprises a proline at position 41, an alanine at position 72, an aspartic
acid at position 73, an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24 and a ine at position 76 each relative to SEQ ID NO: 46;
(1)000 the VH ses a proline at position 41, an alanine at on 72, an aspartic
acid at position 73, an arginine at position 74 and a threonine at position 76 each
relative to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at
position 24, a threonine at position 76 and a glutamic acid at position 51 each relative
to SEQ ID NO: 46;
(lxxxi) the VH comprises a proline at position 41, a leucine at position 51, an alanine at
position 72, an ic acid at position 73, an arginine at position 74, a ine at
position 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL comprises a threonine at position 23, a serine at on
24, a threonine at position 76 and a glutamic acid at position 51 each relative to SEQ
ID NO: 46; and
(i) the VH comprises a e at position 41, a leucine at position 51, an alanine at
position 72, an aspartic acid at position 73, an arginine at position 74, a threonine at
on 76, a glutamic acid at position 102 and an alanine at position 105 each relative
to SEQ ID NO: 42 and the VL comprises a threonine at on 23, a serine at position
24, a threonine at position 76 and a glycine at on 51 each relative to SEQ ID NO:
Optionally, the VH is linked to a heavy chain constant region, e.g., an IgGl
heavy chain constant region. In one e, the heavy chain nt region lacks the
c-terminal lysine residue.
Optionally, the VL is linked to a light chain constant region.
The TL1a-binding proteins of the present disclosure may be synhumanized
proteins. The term “synhumanized protein” refers to a protein prepared by a method
described in WO2007/019620. A synhumanized TLla-binding protein includes a
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
variable region of an antibody, wherein the variable region comprises FRs from a New
World primate dy variable region and CDRs from a non-New World e
antibody variable region. For example, a anized TLla-binding protein includes
a variable region of an antibody, wherein the variable region comprises FRs from a
New World primate antibody variable region and CDRs from a mouse or rat antibody.
In one example, the synhumanized TLla-binding protein is a TLla-binding antibody in
which one or both of the variable regions are synhumanized. This term also
encompasses a composite n comprising, for example, one or more synhumanized
le regions and one or more, e. g., human variable regions or humanized variable
s or chimeric variable regions.
The TLla-binding proteins of the present disclosure may be primatized proteins.
A “primatized protein” comprises variable region(s) from an antibody ted
following immunization of a non-human primate (e.g., a cynomolgus macaque).
Optionally, the variable regions of the non-human primate antibody are linked to
human nt regions to produce a ized dy. Exemplary methods for
producing primatized antibodies are described in US6113898. This term also
encompasses a composite protein comprising, for example, one or more primatized
variable regions and one or more, e. g., human variable regions or humanized variable
regions or ic le regions.
In one example a TLla-binding protein of the disclosure is a chimeric protein.
The term “chimeric proteins” refers to proteins in which an antigen binding domain is
from a particular species (e. g., murine, such as mouse or rat) or belonging to a
particular antibody class or subclass, while the der of the protein is from a
protein derived from another species (such as, for e, human or non-human
primate) or belonging to another antibody class or subclass. In one example, a chimeric
protein is a chimeric dy comprising a VH and/or a VL from a non-human antibody
(e. g., a murine antibody) and the remaining regions of the antibody are from a human
antibody. The production of such chimeric proteins is known in the art, and may be
ed by rd means (as described, e.g., in U86331415; US5807715;
US4816567 and US4816397). This term also encompasses a composite protein
comprising, for example, one or more chimeric variable regions and one or more, e. g.,
human variable regions or humanized variable regions or chimeric variable regions.
The present disclosure also contemplates a deimmunized TLla-binding protein,
e.g., as described in /34317 and W02004/108158. unized antibodies
and proteins have one or more epitopes, e. g., B cell epitopes or T cell epitopes removed
(i.e., mutated) to thereby reduce the likelihood that a subject will raise an immune
se against the antibody or n. For example, a TLla-binding protein of the
disclosure is analyzed to identify one or more B or T cell epitopes and one or more
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
amino acid residues within the epitope is mutated to thereby reduce the
immunogenicity of the TLla-binding protein. The present inventors have used such
techniques to identify epitopes that are predicted to bind to MHC Class II molecules
and identify TLla binding ns less likely to induce an immune se in a
subject.
It will be apparent to the skilled artisan from the foregoing disclosure that a
“composite” protein comprises one form of VH (e. g., human) and another form of VL
(e. g., humanized). The present disclosure explicitly encompasses all combinations of
forms of VH and VL.
Other TLla-Binding Proteins sing an Antigen Binding Domain
The present disclosure also contemplates other TLla-binding proteins
comprising a variable region or antigen binding domain of an antibody, such as:
(i) a single-domain antibody, which is a single polypeptide chain comprising all or
a portion of the VH or a VL of an antibody (see, e.g., US6248516);
(ii) diabodies, triabodies and tetrabodies, e. g., as described in U85844094 and/or
US2008152586;
(iii) scFvs, e. g., as described in USS260203;
(iv) dies, e. g., as described in USS837821;
(V) “key and hole” bispecific proteins as described in USS731168;
(vi) heteroconjugate proteins, e. g., as described in US4676980;
(vii) heteroconjugate proteins produced using a chemical cross-linker, e. g., as
described in US4676980;
(viii) H fragments, e.g., as described in Shalaby et al., J. Exp. Med, 175: 217-
225, 1992; or
(ix) Fab3 (e.g., as described in EP19930302894).
Constant Domain Fusions
The present disclosure encompasses a TLla-binding protein comprising an
antigen binding domain of an dy and a constant region or PC or a domain thereof,
e.g., CH2 and/or CH3 domain. le constant regions and/or domains will be
apparent to the d n and/or the sequences of such polypeptides are y
available from ly available databases. Kabat et al also provide description of
some suitable constant regions/domains.
Constant regions and/or domains thereof are useful for providing ical
activities such as, dimerization, extended serum half life (e.g., by binding to FcRn),
antibody-dependent cell cytotoxicity , complement dependent cytotoxicity
(CDC), dy-dependent cell phagocytosis (ADCP).
ation] jxd
None set by jxd
[Annotation] jxd
ionNone set by jxd
[Annotation] jxd
Unmarked set by jxd
The t disclosure also contemplates TLla-binding proteins comprising
mutant constant s or s, e. g., as described in US7217797; US7217798; or
U82009004l770 (having increased half-life) or USZOOSO37000 (increased ADCC).
The C-terminal lysine of the heavy chain nt region of an antibody of the
disclosure or TLla-binding protein of the disclosure comprising a constant region or PC
may be removed, for e, during production or purification of the antibody, or by
recombinantly engineering the nucleic acid encoding a heavy chain of the antibody or
protein. Accordingly, Whole antibodies or proteins may comprise antibody or protein
populations with all C-terminal lysine residues removed, antibody or protein
populations with no C-terminal lysine es removed, or antibody or protein
populations having a mixture of antibodies with and Without the C-terminal lysine
e. In some examples, the antibody or protein populations may additionally
comprise antibodies or ns in which the C-terminal lysine residue is removed in
one of the heavy chain constant regions. Similarly, a composition of antibodies or
proteins may comprise the same or a similar mix of dy or protein populations
with or Without the C-terminal lysine residue.
Enhancing Effector Function
In one example, a TLla-binding n of the present disclosure may induce
effector function or enhanced effector function.
In the context of the present disclosure, “effector functions” refer to those
biological activities mediated by cells or proteins that bind to the Fc region (a native
sequence Fc region or amino acid sequence variant Fc region) of an antibody that result
in killing of a cell. Examples of effector functions induced by antibodies e:
complement dependent cytotoxicity; antibody-dependent-cell-mediated cytotoxicity
(ADCC); antibody-dependent-cell-phagocytosis (ADCP); and B-cell activation.
In one example, a TLla-binding protein of the t disclosure binds to TLla
on the surface of a cell in such a manner that it is e of inducing an effector
function, such as, ADCC or CDC.
For example, the TLla—binding protein remains bound to the TLla on the
surface of the cell for a time sufficient to induce an effector function, such as ADCC
and/or CDC.
In one example, a TLla-binding protein of the present disclosure is capable of
inducing enhanced effector on, e. g., by virtue of a modified Fc region or by virtue
of comprising a region capable of binding to an immune effector cell. For example, the
level of effector function is increased ed to the level induced by a human IgG1
or IgG3 Fc region. Enhancing effector function induced by a TLla-binding protein of
the disclosure may result in enhanced therapeutic or prophylactic effects, e. g., by not
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
only blocking the action of TLla but also by killing or depleting cells causing a
condition, e. g., by killing auto-reactive T cells.
In one example, the Fc region of a TL1a-binding protein of the sure is
modified to increase the level of effector function it is capable of inducing compared to
the Fc region t the modification. Such modifications can be at the amino acid
level and/or the secondary structural level and/or the tertiary structural level and/or to
the glycosylation of the Fc region.
The skilled addressee will appreciate that greater effector function may be
manifested in any of a number of ways, for example as a greater level of effect, a more
sustained effect or a faster rate of effect.
In one example, the Fc region comprises one or more amino acid modifications
that increase its y to induce enhanced effector function. In one e, the Fc
region binds with greater affinity to one or more FcyRs, such as FcyRIII. In one
example, the Fc region comprise at least one amino acid substitution at a position
selected from the group ting of: 230, 233, 234, 235, 239, 240, 243, 264, 266, 272,
274, 275, 276, 278, 302, 318, 324, 325, 326, 328, 330, 332, and 335, numbered
according to the EU index of Kabat. In one example, the Fc region ses the
following amino acid substitutions S239D/I332E, numbered according to the EU index
of Kabat. This Fc region has about 14 fold increase in affinity for FcyRIIIa compared
to a ype Fc region and about 3.3 increased ability to induce ADCC compared to a
wild-type Fc region. In one example, the Fc region comprises the following amino acid
tutions S239D/A330L/I332E, numbered according to the EU index of Kabat.
This Fc region has about 138 fold se in affinity for a compared to a wild-
type Fc region and about 323 fold increased ability to induce ADCC compared to a
ype Fc region.
Additional amino acid substitutions that increase ability of a Fc region to induce
effector function are known in the art and/or described, for example, in US6737056 or
091.
In one example, the glycosylation of the Fc region is altered to increase its
ability to induce enhanced effector function. In this regard, native antibodies produced
by mammalian cells typically comprise a branched, biantennary oligosaccharide that is
generally attached by an N-linkage to Asn297 of the CH2 domain of the Fc . The
oligosaccharide may include various carbohydrates, e. g., e, N-acetyl
glucosamine (GlcNAc), galactose, and sialic acid, as well as a fucose attached to a
GlcNAc in the “stem” of the biantennary oligosaccharide structure. In some es,
Fc regions according to the present disclosure comprise a carbohydrate structure that
lacks fucose attached (directly or indirectly) to an Fc region, i.e., the Fc region is
“afucosylated”. Such variants may have an improved ability to induce ADCC. Methods
[Annotation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
for producing afucosylated antibodies e, expressing the antibody or antigen
binding fragment thereof in a cell line incapable of expressing (x-l,6-fucosyltransferase
(FUT8) (e.g., as described in -Ohnuki et al., Biotechnol. Bioengineer. 87: 614-
622, 2004), expressing the antibody or antigen binding fragment thereof in cells
expressing a small interfering RNA against FUT8 (e.g., as described in Mori et al.,
Biotechnol. Bioengineer., 88: 901-908, 2004), expressing the antibody or antigen
binding fragment thereof in cells incapable of expressing ine diphosphate
(GDP)-mannose 4,6-dehydratase (GMD) (e. g., as described in Kanda et al., J.
Biotechnol., 130: 300-310, 2007). The present disclosure also contemplates the use of
proteins having a reduced level of fucosylation, e.g., produced using a cell line
modified to express B—(l,4)-N-acetylglucosaminyltransferase III (GnT-III) (e.g., as
described in Umana et al., Nat. Biotechnol. 17: 176-180, 1999).
Other methods include the use of cell lines which inherently produce antibodies
capable of inducing enhanced Fc-mediated effector function (e.g. duck embryonic
derived stem cells for the production of viral vaccines, WO2008/129058; Recombinant
protein production in avian EBX® cells, WC 2008/142124).
TLla-binding proteins of the present disclosure also include those with bisected
oligosaccharides, e. g., in which a biantennary oligosaccharide attached to the Fc region
is bisected by GlcNAc. Such proteins may have d fucosylation and/or improved
ADCC function. Examples of such proteins are described, e.g., in US6602684 and
US20050123546.
TLla-binding proteins with at least one galactose residue in the oligosaccharide
attached to the Fc region are also contemplated. Such proteins may have improved
CDC function. Such proteins are described, e.g., in WOl997/30087 and
WOl999/22764.
TLla-binding proteins can also comprise a Fc region capable of ng
enhanced levels of CDC. For example, s of IgG1 and IgG3 produce antibodies
having enhanced CDC activity (Natsume et al., Cancer Res. 68: 3863-3872, 2008).
inding proteins can also or alternatively be fused to or ated to
proteins (e.g., antibody variable regions) that bind to immune effector cells, e.g., by
virtue of binding to CD3 or CD16.
Methods for determining effector function are known in the art. In one e,
1Cr
the level of ADCC activity is ed using a e assay, an europium release
assay or a 35S release assay. In each of these assays, cells sing TLla are cultured
with one or more of the recited compounds for a time and under ions sufficient
for the compound to be taken up by the cell. In the case of a 35S release assay, the cells
can be cultured with 35S-labeled nine and/or cysteine for a time sufficient for the
labeled amino acids to be incorporated into newly synthesized proteins. Cells are then
[Annotation] jxd
None set by jxd
ation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
cultured in the presence or absence of the protein and in the presence of immune
effector cells, e.g., PBMCs and/or NK cells. The amount of 51Cr, europium and/or 358
in cell culture medium is then detected, and an se in the presence of the n
compared to in the absence of protein indicates that the binding molecule/agent has
effector on. Exemplary publications disclosing assays for assessing the level of
ADCC induced by a protein include Hellstrom et al. Proc. Natl Acad. Sci. USA 83:
7059-7063, 1986 and Bruggemann et al., J. Exp. Med. 166: 1351-1361, 1987.
Other assays for assessing the level of ADCC induced by a protein e
ACTTTM nonradioactive cytotoxicity assay for flow cytometry (CellTechnology, Inc.
CA, USA) or CytoTox 96® dioactive xicity assay (Promega, WI, USA).
Alternatively, or additionally, effector function of a TLla-binding protein is
assessed by determining its affinity for one or more FcyRs, e.g., as described in
US7317091.
Clq binding assays may also be carried out to confirm that the TLla-binding
protein is able to bind Clq and may induce CDC. To assess complement activation, a
CDC assay may be performed (see, for e, Gazzano-Santoro et 01., J. Immunol.
s 202: 163, 1996).
In another example, the TLla-binding protein comprises one or more amino
acid substitutions that increase the half-life of the protein. For example, the TLla-
binding protein comprises a constant region comprising one or more amino acid
substitutions that increase the affinity of the constant region for the al Fc region
(FcRn). For example, the constant region has increased affinity for FcRn at lower pH,
e. g., about pH 6.0, to facilitate Fc/FcRn g in an endosome. In one example, the
constant region has increased affinity for FcRn at about pH 6 compared to its affinity at
about pH 7.4, which facilitates the re-release of PC into blood ing cellular
recycling. These amino acid substitutions are useful for extending the half life of a
TLla-binding protein, by reducing clearance from the blood.
Exemplary amino acid tutions include T250Q and/or M428L or T252A,
T2548 and T266F or M252Y, $254T and T256E or H433K and N434F according to
the EU ing system. Additional or alternative amino acid substitutions are
described, for example, in USZOO70135620 or US7083784.
Stabilized TLla-Binding Proteins
lizing TLla-binding proteins of the present disclosure can comprise an
IgG4 constant region or a stabilized IgG4 constant region. The term “stabilized IgG4
constant region” will be understood to mean an IgG4 constant region that has been
modified to reduce Fab arm exchange or the propensity to undergo Fab arm exchange
or formation of a half-antibody or a propensity to form a half-antibody. “Fab arm
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
exchange” refers to a type of n modification for human IgG4, in which an IgG4
heavy chain and ed light chain (half-molecule) is swapped for a heavy-light chain
pair from another IgG4 molecule. Thus, IgG4 molecules may acquire two distinct Fab
arms izing two distinct antigens (resulting in ific molecules). Fab arm
exchange occurs naturally in vivo and can be induced in vitro by purified blood cells or
reducing agents such as d hione. A “half-antibody” forms when an IgG4
antibody iates to form two molecules each containing a single heavy chain and a
single light chain.
In one example, a ized IgG4 constant region comprises a proline at
position 241 of the hinge region according to the system of Kabat (Kabat et al.,
Sequences of Proteins of Immunological Interest gton DC United States
Department of Health and Human Services, 1987 and/or 1991). This position
corresponds to position 228 of the hinge region according to the EU numbering system
(Kabat et (1]., Sequences of Proteins of Immunological Interest Washington DC United
States Department of Health and Human Services, 2001 and n et al., Proc. Natl.
Acad. USA, 63: 78-85, 1969). In human IgG4, this e is generally a serine.
Following substitution of the serine for proline, the IgG4 hinge region comprises a
sequence CPPC. In this regard, the skilled person will be aware that the “hinge region”
is a proline-rich portion of an antibody heavy chain constant region that links the PC
and Fab regions that confers mobility on the two Fab arms of an antibody. The hinge
region es cysteine residues which are involved in inter-heavy chain disulfide
bonds. It is generally defined as stretching from Glu226 to Pro243 of human IgG1
according to the numbering system of Kabat. Hinge regions of other IgG isotypes may
be aligned with the IgGl sequence by placing the first and last cysteine residues
forming inter-heavy chain disulphide (S-S) bonds in the same positions (see for
example WO2010/080538).
Mutant TLla-Binding Proteins
The present disclosure also provides a TLl-binding protein or a nucleic acid
encoding same having at least 80% identity to a sequence disclosed herein. In one
example, a TLla-binding protein or nucleic acid of the disclosure comprises sequence
at least about 85% or 90% or 95% or 97% or 98% or 99% identical to a sequence
disclosed herein, wherein the protein specifically binds to TLla and inhibits interaction
of TLla and DR3 and does not inhibit ction of TLla and DcR3.
Alternatively, or additionally, the TLla-binding protein comprises a CDR (e. g.,
three CDRs) at least about 80% or 85% or 90% or 95% or 97% or 98% or 99%
identical to CDR(s) of a VH or VL as described herein according to any example,
wherein the protein is capable of specifically binding to TLla and inhibiting interaction
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
of TL1a and DR3, wherein the protein does not inhibit interaction of TL1a and DcR3.
In this regard, the ors have produced numerous antibodies having diverse
sequences within their CDRs. Methods for determining binding of a protein TL1a and
determining the interaction of TL1a and DR3 or TL1a and DcR3 are described herein.
For example, the inventors have identified a group of TL1a-binding proteins
sharing 60% ty in their HCDR1 according to the Kabat ing system and
another subgroup of proteins sharing 80% identity in their HCDR1 ing to the
Kabat numbering system.
The inventors have also identified a subclass of TL1a-binding ns sharing
40% identity or 47% identity in their HCDR2 according to the Kabat numbering
system.
As discussed herein, it is also known in the art that the five C—terminal residues of
heavy chain CDR2 can be mutated to conservative or non-conservative amino acid
substitutions (31% of residues) (Padlan et al., FASEB J. 9: 133-139, 1995). Thus, a
protein can se a CDR2 having at least about 69% identity to a heavy chain
CDR2 sequence disclosed herein.
The ors have also identified a class of ns comprising variants of the
variable regions of antibody C320 bed herein. These variants permit
identification of sites within the variable regions that can be substituted without loss of
function.
For example, the inventors have fied several residues in a VH comprising a
sequence set forth in SEQ ID NO: 42 that can be substituted t loss of function.
ingly, the sure encompasses proteins comprising a VH with at least about
86% identity to a sequence set forth in SEQ ID NO: 42. In this regard, the inventors
have produced a modified form of SEQ ID NO: 42 having about 17 amino acid
substitutions (i.e., about 86% identity thereto) that retains a function recited herein. In
this regard, the inventors have also ed a modified forms of SEQ ID NO: 42
having about 90 or 94% ty thereto that retains a function recited herein. In one
example, the sequence has at least about 95% or 96% or 97% or 98% identity to a
sequence set forth in SEQ ID NO: 42. In this regard, the inventors have produced
proteins having about 97% or 98% or 99% identity to a sequence set forth in SEQ ID
NO: 42. In one example, the sequence has at least about 99% identity to a sequence set
forth in SEQ ID NO: 42. In one example, the sequence has at least about 99.2%
identity to a sequence set forth in SEQ ID NO: 42.
In one example, the TL1a-binding protein comprises between 1 and 17 amino
acid substitutions compared to SEQ ID NO: 42. For example, the TL1a-binding
protein comprises 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 or 11 or 12 or 13 or 14
or 15 or 16 or 17 amino acid substitutions compared to SEQ ID NO: 42.
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
In one e, the TLla-binding protein comprises between 1 and 17 amino
acid substitutions in the FRs compared to SEQ ID NO: 42. For example, the TL1a-
binding n comprises 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 or 11 or 12 or 13
or 14 or 15 or 16 or 17 amino acid substitutions in the FRs compared to SEQ ID NO:
42. In one example, the substitution is not at position 73 of SEQ ID NO: 42.
In one example, the TLla-binding protein ses between 1 and 3 amino acid
substitutions in CDR3 compared to SEQ ID NO: 42. For example, the TLla-binding
protein comprises 1 or 2 or 3 amino acid substitutions in the CDR3 compared to SEQ
ID NO: 42. In one example, the substitution is not at one or more of positions 99 or
101 or 104 or 108 of SEQ ID NO: 42.
In one example, TLla-binding n comprises one or more substitutions to
prevent or reduce glycosylation of the n, wherein the substitution(s) are n
amino acids 72 to 76 of SEQ ID NO: 42. For example, the n comprises an
alanine in place of the arginine at position 71 and/or an aspartic acid in place of the
asparagine at on 72 and/or an arginine in place of the threonine at on 73
and/or a threonine in place of the isoleucine at position 75 of SEQ ID NO: 42.
In one example, the VH of the protein is not glycosylated and/or does not
se a consensus site for N—linked glycosylation.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
serine at position 16 of SEQ ID NO: 42.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
e at position 41.
In one example, a TLla-binding protein of the disclosure ses a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
arginine at position 74.
In one example, a TLla-binding n of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
glutamic acid or glycine at position 49 of SEQ ID NO: 42.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
ce set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
proline at position 41 and a leucine at position 51 and a glutamic acid at position 102
and an alanine at position 105 each relative to SEQ ID NO: 42.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
proline at position 41 and a leucine at position 51 and an alanine at position 72 and an
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
aspartic acid at position 73 and an arginine at position 74 and a ic acid at
on 102 and an alanine at position 105 each relative to SEQ ID NO: 42.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 42, wherein the mutant sequence at least comprises a
proline at position 41 and a leucine at position 51 and an alanine at position 72 and an
aspartic acid at position 73 and an arginine at position 74 and a threonine at position 76
and a glutamic acid at position 102 and an alanine at on 105 each relative to SEQ
ID NO: 42.
The inventors have identified a site Within HCDR2 that can be substituted.
Coupled with the observations of Padlan et (1]., supra, the disclosure thus provides a
protein comprising a VH comprising a CDR2 having a sequence at least about 65%
cal to a sequence set forth in SEQ ID NO: 44. In one example, the percentage
identity is at least about 70% or 75% or 80% or 90%. In one example, the percentage
identity is at least about 94%.
The inventors have identified numerous sites Within HCDR3 that can be
substituted. The disclosure thus provides a protein comprising a VH comprising a
CDR3 having a sequence at least about 60% identical to a sequence set forth in SEQ ID
NO: 45. In one example, the percentage identity is at least about 70% identical to a
sequence set forth in SEQ ID NO: 45, e. g., as exemplified herein. In one example, the
percentage identity is at least about 75% or 80% or 90%. In one e, the
percentage identity is at least about 90%.
In one example, a mutant form of SEQ ID NO: 45 comprises a glutamic acid at
position 1 of SEQ ID NO: 45 and/or a proline at position 3 of SEQ ID NO: 45 and/or
an alanine at position 6 of SEQ ID NO: 45. Optionally, the mutant form additionally
comprises a phenylalanine at position 8 of SEQ ID NO: 45 and/or a tyrosine at position
of SEQ ID NO: 45.
Additional residues that can be mutated are set out in Figures 1C—1E and in SEQ
ID NOs: 94, 137, 152, 162 and 173.
In one e, the inventors have identified several es in a VL sing
a sequence set forth in SEQ ID NO: 46 that can be substituted Without loss of function.
Accordingly, the disclosure encompasses proteins comprising a VL With at least about
95% identity to a sequence set forth in SEQ ID NO: 46. For example, the inventors
have d 32 residues in the VL Without loss of function, g that the
sure provides a protein having at least about 71% identity to a sequence set forth
in SEQ ID NO: 46. In one example, the tage identity is at least about 75% or
80% or 90% or 95% or 97%. In one example, the percentage identity is at least about
98%. In one example, the percentage ty is at least about 99%. In one example,
the tage identity is at least about 99.1%.
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
ation] jxd
Unmarked set by jxd
In one e, the inding protein comprises between 1 and 17 amino
acid substitutions ed to SEQ ID NO: 42. For example, the TLla-binding
n ses 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 or 11 or 12 or 13 or 14
or 15 or 16 or 17 or 18 or 19 or 20 or 21 or 22 or 23 or 24 or 25 or 26 or 27 or 28 or 29
or 30 or 31 or 32 amino acid substitutions compared to SEQ ID NO: 46.
In one example, the TLla-binding n comprises between 1 and 32 amino
acid substitutions in the FRs compared to SEQ ID NO: 46. For e, the TLla-
binding protein comprises 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 or 11 or 12 or 13
or 14 or 15 or 16 or 17 or 18 or 19 or 20 or 21 or 22 or 23 or 24 or 25 or 26 or 27 or 28
or 29 or 30 or 31 or 32 amino acid substitutions in the FRs compared to SEQ ID NO:
In one example, the TLla-binding protein comprises between 1 and 3 amino acid
substitutions in a CDR compared to SEQ ID NO: 46. For example, the TLla-binding
protein comprises 1 or 2 or 3 amino acid substitutions in a CDR compared to SEQ ID
NO: 46. In one example, the substitution is not at one or more of positions 34, 54, 94
of SEQ ID NO: 46.
In one example, a TLla-binding n of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 46, wherein the mutant sequence at least comprises a
serine at position 24 of SEQ ID NO: 46.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 46, wherein the mutant sequence at least comprises a
threonine at position 76 of SEQ ID NO: 46.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 46, wherein the mutant sequence at least comprises a
glutamine at position 81 of SEQ ID NO: 46.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 46, wherein the mutant sequence at least comprises a
threonine at position 23 and a serine at position 24 and a threonine at position 76 each
relative to SEQ ID NO: 46.
In one example, a TLla-binding protein of the disclosure comprises a mutant of a
sequence set forth in SEQ ID NO: 46, wherein the mutant sequence at least ses a
threonine at position 23 and a serine at on 24 and a threonine at position 76 and a
glutamic acid at position 51 each ve to SEQ ID NO: 46.
The inventors have identified a plurality of sites within LCDRl that can be
substituted. The disclosure thus provides a protein comprising a VL comprising a
CDRl having a sequence at least about 60% identical to a sequence set forth in SEQ ID
NO: 47. In one example, the percentage identity is at least about 70% or 75% or 80%
or 90%. For example, the inventors have mutated two sites within LCDRl comprising
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
a sequence set forth in SEQ ID NO: 47, thus ing a protein having at least about
86 identity to the recited sequence. In one example, the percentage identity is at least
about 90%.
In one example, a TLla binding protein of the disclosure comprises a VH
comprising a sequence set forth in SEQ ID NO: 42 and a VL comprising a sequence set
forth in SEQ ID NO: 46, wherein the VH and/or VL comprise one or more of the
following substitutions or groups of tutions:
(i) the VH ses at least a serine at position 16 of SEQ ID NO: 42;
(ii) the VL comprises at least a threonine at position 76 of SEQ ID NO: 46;
(iii) the VL ses at least a glutamine at position 81 of SEQ ID NO: 46;
(iv) the VH comprises at least a proline at position 41 and a leucine at position 51 and
a glutamic acid at position 102 and an alanine at position 105 each relative to SEQ ID
NO: 42 and the VL comprises at least a threonine at position 23 and a serine at position
24 and a threonine at position 76 each ve to SEQ ID NO: 46; or
(v) the VH comprises at least a proline at position 41 and a leucine at position 51 and
an alanine at position 72 and an ic acid at position 73 and an arginine at position
74 and a glutamic acid at position 102 and an alanine at position 105 each relative to
SEQ ID NO: 42 and a VL comprises at least a threonine at position 23 and a serine at
position 24 and a threonine at position 76 and a glutamic acid at position 51 each
relative to SEQ ID NO: 46.
In another example, a nucleic acid of the disclosure comprises a ce at least
about 80% or 85% or 90% or 95% or 97% or 98% or 99% identical to a sequence set
forth herein and ng a TLla-binding protein which is capable of specifically
binding to TLla and inhibiting ction of TLla and DR3, wherein the protein does
not inhibit interaction of TLla and DcR3. The present disclosure also asses
nucleic acids encoding a TLla-binding n of the disclosure, which differs from a
sequence exemplified herein as a result of degeneracy of the genetic code.
The % identity of a nucleic acid or polypeptide is determined by GAP
(Needleman and Wunsch. M01. Biol. 48, 443-453, 1970) analysis (GCG program) with
a gap creation y=5, and a gap extension penalty=0.3. The query sequence is at
least 50 residues in length, and the GAP analysis aligns the two sequences over a
region of at least 50 residues. For e, the query sequence is at least 100 residues
in length and the GAP is aligns the two sequences over a region of at least 100
residues. For example, the two sequences are aligned over their entire length.
As discussed above, the present disclosure also contemplates a nucleic acid that
hybridizes under stringent hybridization conditions to a nucleic acid encoding a TLlabinding
protein described herein, e. g., nucleic acid encoding a VH or VL of antibody
C319, C320, C321, C323, C333, C334, C336, C320-3, , C320-90, C320-103,
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
ed set by jxd
C320-114, C320-115, C320-120, C320-129, C320-130, C320-135, C320-162, C320-
163, C320-l64, C320-165, C320-166, C320-167, C320-168, C320-169, C320-l70,
C320-171, C320-172, C320-l79 or A ate stringency” is defined
, 83.
herein as being a hybridization and/or washing carried out in 2 x SSC buffer, 0.1%
(w/v) SDS at a temperature in the range 45°C to 65°C, or equivalent conditions. A
“high stringency” is defined herein as being a hybridization and/or wash carried out in
0.1 x SSC buffer, 0.1% (w/v) SDS, or lower salt concentration, and at a temperature of
at least 65°C, or equivalent conditions. Reference herein to a particular level of
stringency encompasses equivalent conditions using wash/hybridization solutions other
than SSC known to those d in the art. For example, methods for calculating the
temperature at which the strands of a double ed c acid will dissociate (also
known as g temperature, or Tm) are known in the art. A ature that is
r to (e. g., within 5°C or within 10°C) or equal to the Tm of a nucleic acid is
considered to be high stringency. Medium stringency is to be considered to be within
10°C to 20°C or 10°C to 15°C of the calculated Tm of the nucleic acid.
The present disclosure also contemplates mutant forms of a TLla-binding
n of the disclosure comprising one or more conservative amino acid substitutions
compared to a ce set forth herein. In some examples, the TLla-binding protein
comprises 10 or fewer, e. g., 9 or 8 or 7 or 6 or 5 or 4 or 3 or 2 or 1 conservative amino
acid substitutions. A “conservative amino acid substitution” is one in which the amino
acid residue is replaced with an amino acid residue having a similar side chain and/or
hydropathicity and/or hydrophilicity.
es of amino acid residues having similar side chains have been defined in
the art, including basic side chains (e. g., lysine, arginine, histidine), acidic side chains
(e. g., aspartic acid, glutamic acid), uncharged polar side chains (e. g., glycine,
gine, glutamine, serine, threonine, tyrosine, cysteine), nonpolar side chains (e. g.,
alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan), fi-
branched side chains (e. g., threonine, valine, isoleucine) and aromatic side chains (e. g.,
tyrosine, phenylalanine, tryptophan, histidine). Hydropathic indices are described, for
example in Kyte and Doolittle J. M01. Biol, 157: 105-132, 1982 and hydrophylic
indices are described in, e. g., US4554101.
The present disclosure also contemplates non-conservative amino acid changes.
For example, of particular interest are tutions of d amino acids with
another charged amino acid and with neutral or positively charged amino acids. In
some examples, the inding protein comprises 10 or fewer, e.g., 9 or 8 or 7 or 6
or 5 or 4 or 3 or 2 or 1 non-conservative amino acid substitutions.
[Annotation] jxd
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[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
In one example, the mutation(s) occur Within a FR of an antigen g domain
of a TLla-binding protein of the disclosure. In another example, the mutation(s) occur
Within a CDR of a TLla-binding protein of the disclosure.
Exemplary methods for producing mutant forms of a TLla-binding protein include:
0 mutagenesis of DNA (Thie et ol., Methods Mol. Biol. 525: 309-322, 2009) or
RNA (Kopsidas et al., l. Lett. [07:163-168, 2006; Kopsidas et al. BMC
Biotechnology, 7: 18, 2007; and WOl999/058661);
0 introducing a nucleic acid encoding the polypeptide into a mutator cell, e. g.,
XL-lRed, XL-mutS and XL-mutS-Kanr bacterial cells (Stratagene);
0 DNA shuffling, e.g., as sed in Stemmer, Nature 370: 389-91, 1994; and
0 site directed mutagenesis, e.g., as described in Dieffenbach (ed) and Dveksler
(ed) (In: PCR Primer: A Laboratory Manual, Cold Spring Harbor Laboratories,
NY, 1995).
ary methods for determining biological activity of the mutant TLla-
binding proteins of the disclosure Will be apparent to the skilled artisan and/or
described , e. g., antigen binding. For example, methods for determining antigen
g, competitive inhibition of binding, ty, association, dissociation and
therapeutic efficacy are described herein.
Exemplary TL]a-Binding Proteins
Exemplary variable region containing TLla-binding proteins ed by the
inventors and their ng nucleic acids are described in Tables 1 and 2.
Table 1: Sequences of exemplary TLla—binding proteins and encoding nucleic acids
Antibody Name VH amino acid VH chain VL amino acid VL chain
SEQ ID NO nucleotide SEQ ID NO nucleotide
SEQ ID NO SEQ ID NO
1 C336 2 96 6 97
2 98 14 99
3 100 22 101
4 102 30 103
104 38 105
6 106 46 107
7 108 54 109
8 1 10 46 107
C320—90 112 62 111
[Annotation] jxd
None set by jxd
[Annotation] jxd
MigrationNone set by jxd
[Annotation] jxd
Unmarked set by jxd
C320—103 113 62 111
C320—1 14 114 62 111
C320— 115 115 62 111
C320— 129 117 46 107
C320— 135 110 62 111
C320—8 163
C320—9 165
C320—10 166
1 167
C320—12 168
C320—13 169
C320—14 170
C320—15 171
C320—16 46
C320—17 46
C320—18 46
C320— 19 46
C320—21 46
C320—23 46
C320—24 46
C320—25 -2 164
C320—26 —-2 163
C320—28 —-2 166
0 —-2 168
C320—32 —-2 170
C320—33 —-2 171
C320—162 188 228
C320—163 189 228
C320—164 190 229
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48 C320—165 178
49 C320—166 179
5O C320—167 180
52 C320—169 182
54 C320—171 184
56 C320—179 186
57 83 187
Table 2: Amino acid substitutions in VH (relative to SEQ ID NO: 42) and VL (relative
to SEQ ID NO: 46) of exemplary TLla-binding proteins.
Antibody VH substitution1 VL substitution1
name
1 C320—2 A16S none
C320—53 A76T
3 C320—54 A76T
4 C320—55 A76T
C320—56 A76T
6 C320—57 A76T
7 C320—58 A76T
8 C320—59 A76T
9 C320—6O A76T
lO C320—6l A76T
11 C320—62 OOS A76T
12 C320—63 OOH A76T
13 C320—64 OOL A76T
14 5 <<<<<<< OOD A76T
16 C320—67 OOP A76T
18 C320—69 << OOK A76T
19 C320—7O A76T
2O C320—7l A76T
21 2 A76T
22 C320—73 PlOlL A76T
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Antibody VH substitution1 VL substitution1
name
23 4 P101D A76T
24 C320—75 P101Y A76T
C320—76 P101Q A76T
26 C320—77 P101K A76T
27 C320—78 D 02A A76T
29 C320—80 D 02H A76T
31 C320—82 D O2Y A76T
32 C320—83 D 021’ A76T
33 C320—84 D O2Q A76T
34 C320—85 D 02K A76T
C320—86 T103A A76T
36 C320—87 T1038 A76T
37 C320—88 T103H A76T
38 C320—89 T103L A76T
39 C320—90 T103D A76T
4O C320—91 T103Y A76T
41 C320—92 A76T
42 C320—93 A76T
43 C320—94 A76T
44 C320—95 A A76T
45 C320—96 A A76T
46 C320—97 A A76T
47 C320—98 A A76T
48 C320—99 A O4Y A76T
49 C320—1OO A 041’ A76T
5O C320—101 A O4Q A76T
51 C320—102 A 04K A76T
53 C320—104 SlOSH A76T
55 C320—106 SlOSD A76T
56 C320—107 SlOSY A76T
57 C320—108 SlOSP A76T
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dy VH substitution1 VL substitution1
name
58 C320—109 S 105Q A76T
59 C320—1 10 A76T
6O C320—1 11 A76T
61 C320—1 12 A76T
62 C320—1 13 A76T
64 C320—1 15 E107D A76T
66 C320—1 17 E107P A76T
67 C320—1 18 E107Q A76T
68 C320—1 19 E107K A76T
69 C320—12O T—-1P A23T
71 C320—122 T—-1P L33Y
73 C320—124 T—-1P Y53N
75 C320—126 T—-1P P82A
76 C320—127 —-1P G95S
77 C320—128 T—-1P T96S
78 C320—129 D 02E None
79 C320—13O None
80 C320—131 D49E
81 C320—135 -1P A76T
82 C320—162 -1P+V151L+S75A+D102E A76T
83 C320—163 -1P +R72A+N73D+T74R+I76T A76T
84 C320—164 51L+D102E G24S+A76T
85 C320—165 -1P+V151L+D102E A23T+G24S+A76T
86 C320—166 T—-1P+V151L+D102E A23T+A76T
98 C320—168 T—-1P+V151L+D102E+S 105A 24S+A76T
9O C320—17O T—-1P+R72A+N73D+T74R+I76T A23T+G24S+A76T
91 C320— 1 71 T—-1P+R72A+N73D+T74R+I76T 24S+A76T+Y51P
92 C320—172 T—-1P+R72A+N73D+T74R+I76T A23T+G24S+A76T+Y51E
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Antibody VH substitution1 VL substitution1
name
93 C320—179 T—-1P+M51L+R72A+N73D+T74R+I76T A23T+G24S+A76T+Y51E
+D102E+S 105A
94 C320—183 M51L+R72A+N73D+T74R+I76T A23T+G24S+A76T+Y51G
+D102E+S 105A
substitutions are listed as: residue in SEQ ID NO: 42 or 46; position in SEQ ID NO:
42 or 46; substituted amino acid. i.e., A16S in VH, means that at position 16 of SEQ ID
NO: 42 there is an alanine that has been substituted with a serine in the TLla-binding
protein.
Methods for Producing Proteins
Recombinant Expression
As discussed herein, a nucleic acid encoding a inding protein of the
disclosure (and/or polypeptides included in such a inding protein) is uced
into an expression construct, such that it is operably linked to a promoter to thereby
facilitate its expression. Methods for producing expression constructs, e.g., cloning
into expression ucts/vectors are known in the art and/or described in Ausubel et
al., (In: Current Protocols in Molecular Biology. Wiley Interscience, ISBN 047
, 1987), and (Sambrook et al., (In: Molecular g: Molecular Cloning: A
Laboratory Manual, Cold Spring Harbor Laboratories, New York, Third Edition 2001)
and 969.
In one example, the TLla-binding protein of the disclosure is expressed in a
bacterial cell. Typical promoters suitable for expression in bacterial cells such as for
example a bacterial cell selected from the group comprising E. coli, Staphylococcus Sp,
Corynebacterium sp., Salmonella sp., Bacillus sp., and Pseudomonas sp., include, but
are not limited to a er such as lacz, Ipp, a ature-sensitive (L or (R
promoters, T7, T3, SP6 or semi-artificial promoters such as the IPTG-inducible tac
er or lacUV5 promoter.
In another example, the TLla-binding protein is expressed in a yeast cell.
Typical promoters suitable for expression in yeast cells such as, Pichia pastoris,
Saccharomyces cerevisiae and S. pombe, include, but are not limited to promoters from
the following genes ADH], GAL], GAL4, CUPI, PH05, nmt, RPRI, or TEF].
In a r e, the TLla-binding protein is expressed in an insect cell.
Typical promoters suitable for expression in insect cells, or in insects, include, but are
not limited to, the OPEI2 promoter, the insect actin promoter isolated from Bombyx
muri, the Drosophila sp. dsh promoter (Marsh et al., Hum. Mol. Genet. 9: 13-25, 2000).
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A TLla-binding protein of the disclosure can also be expressed in plant cells.
Promoters for expressing peptides in plant cells are known in the art, and e, but
are not d to, the Hordeum vulgare amylase gene promoter, the cauliflower mosaic
Virus 35S promoter, the nopaline synthase (NOS) gene promoter, and the auxin
inducible plant promoters Pl and P2.
In one example, a TLla-binding protein of the disclosure is expressed in a
mammalian cell or in a mammal. Typical promoters suitable for expression in a
ian cell include, for example a promoter selected from the group consisting of,
retroviral LTR elements, the SV40 early promoter, the SV40 late promoter, the CMV
IE egalovirus immediate early) promoter, the EF1 promoter (from human
elongation factor 1), the EM7 promoter, the UbC promoter (from human ubiquitin C).
Examples of useful mammalian host cell lines include monkey kidney CVl line
ormed by SV40 (COS-7); human embryonic kidney line (HEK-293 cells) ; baby
hamster kidney cells (BHK); Chinese hamster ovary cells (CHO); African green
monkey kidney cells 76); or myeloma cells (e. g., NS/O .
Other elements of expression constructs/vectors are known in the art and
include, for example, enhancers, transcriptional terminators, polyadenylation
sequences, nucleic acids encoding selectable or detectable markers and origins of
replication.
In one e, an expression construct is a bicistronic expression construct.
By “bicistronic” is meant a single nucleic acid molecule that is capable of encoding two
ct polypeptides from ent regions of the c acid, for example, a single
c acid capable of encoding a VH containing polypeptide and a VL containing
polypeptide as distinct polypeptides. Generally, the regions encoding each distinct
polypeptide are separated by an internal ribosome entry site (IRES) and the region 5’ of
the IRES does not comprise a transcription termination sequence. Exemplary IRESs
are described, for example, in 0247455.
Following production of a suitable expression construct, it is introduced into a
suitable cell using any method known in the art. Exemplary methods include
microinjection, ection mediated by DEAE-dextran, transfection mediated by
liposomes such as using cially available reagents, PEG-mediated DNA uptake,
electroporation and microparticle bombardment such as by using DNA-coated tungsten
or gold particles (Agracetus Inc., WI, USA) amongst others.
The cells used to produce the TLla-binding protein of this disclosure are then
cultured under conditions known in the art to produce a TLla-binding protein of the
disclosure.
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Cell free expression systems are also plated by the present disclosure,
e.g., the TNT T7 and TNT T3 systems (Promega), the pEXPl-DEST and pEXP2-
DEST vectors (Invitrogen).
Protein Purification
Following production/expression, a TLla-binding protein of the disclosure is
purified using a method known in the art. Such purification provides the protein of the
disclosure ntially free of cific protein, acids, , carbohydrates, and the
like. In one example, the protein will be in a preparation wherein more than about 90%
(e. g. 95%, 98% or 99%) of the protein in the preparation is a inding protein of
the disclosure.
rd methods of peptide purification are ed to obtain an isolated
TLla-binding protein of the sure, including but not limited to various high-
pressure (or performance) liquid chromatography (HPLC) and non-HPLC polypeptide
ion protocols, such as size exclusion tography, ion exchange
chromatography, hydrophobic interaction chromatography, mixed mode
chromatography, phase separation methods, ophoretic separations, precipitation
methods, salting in/out methods, immunochromatography, and/or other methods.
In one example, affinity purification is useful for isolating a fusion protein
comprising a label. Methods for isolating a protein using affinity tography are
known in the art and described, for example, in Scopes (In: Protein purification:
principles and practice, Third n, Springer Verlag, 1994). For example, an
antibody or compound that binds to the label (in the case of a polyhistidine tag this may
be, for example, nickel-NTA) is immobilized on a solid support. A sample comprising
a protein is then contacted to the immobilized antibody or compound for a time and
under conditions sufficient for binding to occur. Following washing to remove any
d or non-specifically bound protein, the protein is eluted.
In the case of a TLla-binding protein comprising a Fc region of an antibody,
protein A or protein G or modified forms thereof can be used for affinity purification.
n A is useful for isolating purified proteins comprising a human yl or 74
, y2,
heavy chain Fc region. Protein G is recommended for all mouse Fc isotypes and for
human y3.
Conjugates
In one example, a TLla-binding protein of the present disclosure is conjugated
to a compound. For example, the compound is selected from the group consisting of a
radioisotope, a detectable label, a therapeutic compound, a colloid, a toxin, a nucleic
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acid, a peptide, a protein, a nd that increases the half life of the TLla-binding
protein in a subject and mixtures thereof.
The other compound can be directly or indirectly bound to the TLla-binding
protein (e.g., can comprise a linker in the case of indirect binding). Examples of
compounds include, a radioisotope (e.g., iodine-131, yttrium-90 or indium-111), a
detectable label (e.g., a fluorophore or a fluorescent nanocrystal or quantum dot), a
eutic compound (e.g., a chemotherapeutic or an anti-inflammatory), a colloid
(e.g., gold), a toxin (e.g., ricin or tetanus toxoid), a nucleic acid, a peptide (e.g., a
serum albumin binding peptide), a protein (e.g., a n comprising an antigen
binding domain of an antibody or serum albumin), a compound that increases the half
life of the TLla—binding n in a t (e. g., polyethylene glycol or other water
soluble polymer having this activity) and mixtures thereof. Exemplary compounds that
can be conjugated to a TLla-binding protein of the disclosure and s for such
conjugation are known in the art and described, for example, in W02010/059821.
The TLla-binding protein may be conjugated to nanoparticles (for example as
reviewed in Kogan et al., Nanomedicine (Land). 2: 287-306, 2007). The nanoparticles
may be metallic nanoparticles.
The TLla-binding protein may be comprised in dy-targeted bacterial
minicells (for example as described in ).
Some exemplary nds that can be conjugated to a TLla-binding protein
of the present disclosure are listed in Table 3.
Table 3. Compounds useful in ation.
Radioisotopes r 123I, 1251, 130L 133L 1351,47Sc, ”As, 72Sc, 90Y, 88Y, 97Ru,
directly or indirectly) 100Pd, 101miui,101mRh, 1193b, 1283a, 197Hg, 211At, 212Bi, 1,
169F311, ZIZPb, 109Pd, lllIn 76BI‘
, 67Gu, 68Gll, 67Cu, 75BI‘, , 77131,,
99mTc, 11C, EN, 150, 18L lsSRC, 203131), 64Cu, IOSRh, 198Au,
199Ag 01'177L11
Half life extenders Polyethylene glycol
Glycerol
Glucose
Fluorescent probes rythrin (PE)
Allophycocyanin (APC)
Alexa Fluor 488
Cy5.5
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Biologics fluorescent proteins such as Renilla luciferase, GFP
immune modulators or proteins, such as cytokines, e.g., an
interferon
toxins
an immunoglobulin or antibody or antibody variable region
half life extenders such as albumin or antibody le
regions or Hetides that bind to albumin
Chemotherapeutics Taxol
S-FU
Doxorubicin
Idarubicin
ing Assays
TLla-binding proteins comprising antibody binding domains of the present
disclosure are readily screened for biological activity, e. g., as described below.
Binding Assays
One form of assay is an antigen g assay, e.g., as described in Scopes (In:
Protein purification: principles and practice, Third Edition, Springer Verlag, 1994).
Such a method generally involves ng the TLla-binding protein and contacting it
with immobilized antigen. ing washing to remove non-specific bound protein,
the amount of label and, as a consequence, bound protein is detected. Of course, the
TLla-binding protein can be immobilized and the antigen labeled. Panning-type
, e.g., as described or exemplified herein can also be used. Alternatively, or
onally, surface plasmon resonance assays can be used.
In one example, a binding assay is performed with peptide comprising an
epitope of TLla. In this way, TLla-binding proteins that bind to a specific region of
TLla are selected.
Inhibition of Interaction of TLla and DR3
Methods for identifying TLla-binding proteins that inhibit interaction of TLla
and DR3 will be apparent to the skilled artisan based on the description .
For example, DR3 (e. g., 2ug/ml 0f DR3) is immobilized on a surface and
contacted with TLla (e.g., lug/ml TLla) and with a inding n to be tested
(in the case of ls, an isotype matched control antibody is . A reduced level
of TLla bound to the DR3 in the presence of the TLla-binding protein compared to in
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the absence of the TLla-binding protein indicates that the TLla-binding protein
ts binding of TLla to DR3. The assay can also be performed with immobilized
TLla to which DR3 is contacted. The assay can also be performed with labeled TLla
and/or DR3 to assist with detection.
In some examples, various concentrations of the TLla-binding protein are tested
and the concentration at which 50% of the maximum inhibition of binding of TLla to
DR3 by the TLla-binding protein is determined (this concentration is known as ECso).
In one example, the EC50 of a TLla-binding protein of the t disclosure is less
than about 5nM or 4nM or 3.5nM or 3nM or 2.5nM or 2.3nM or lnM or 0.5nM. In one
example, the EC50 is less than 3nM. In one example, the EC50 is less than 2.5nM. In
one example, the EC50 is less than lnM. In one example, the ECso is less than 0.5nM.
In some examples, the maximal inhibition of ction of TLla and DR3 is
assessed by ining the level of interaction of TLla and DR3 in the presence and
absence of a TLla-binding protein. The level of inhibition of interaction of TLla and
DR3 in the presence of the protein is then expressed as a percentage of the level of
interaction in the e of the protein. In one example, the TLla-binding protein
inhibits at least about 80% of interaction between TLla and DR3. For e, the
percentage inhibition is at least about 84% or 85% or 90% or 93% or 94% or 95%. In
one example, the percentage inhibition is at least about 93%. In one example, the
percentage tion is at least about 94%. In one example, the percentage inhibition
is assessed using a polypeptide sing DR3 fused to an antibody Fc . In one
example, the TLla-binding protein is used at a concentration of about lOug/ml.
Selective Inhibition of Interaction of TLla and DR3
Methods for identifying TLla-binding proteins that inhibit interaction of TLla
and DR3 but not TLla and DcR3 will be apparent to the skilled artisan and/or
described herein.
For example, DcR3 (e.g., 2ug/ml DcR3) is immobilized on a surface and
contacted with TLla (e.g., lug/ml TLla) and a TLla-binding protein to be tested (in
the case of negative controls, an isotype-matched control antibody is used). The level
of TLla bound to DcR3 is then determined. A reduced level of TLla bound to the
DcR3 in the ce of the TLla-binding protein compared to in the absence of the
TLla-binding protein indicates that the TLla-binding n inhibits binding of TLla
to DcR3. A similar level of bound TLla in the presence or absence of the TLla-
binding protein indicates that the TLla-binding protein does not inhibit interaction of
TLla and DcR3. The assay can also be med with immobilized TLla to which
DcR3 is contacted.
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In some examples, various trations of the TLla-binding protein are tested
to determine the level of inhibition of TLla interaction with DcR3 at different
concentrations.
In some examples, the maximal inhibition of interaction of TLla and DcR3 is
assessed by determining the level of interaction of TLla and DcR3 in the presence and
absence of a inding protein. The level of inhibition of interaction of TLla and
DcR3 in the presence of the protein is then sed as a percentage of the level of
interaction in the absence of the protein. In one example, the TLla-binding protein at a
concentration of lOug/ml ts 25% or less of the interaction between TLla and
DcR3. For example, the percentage inhibition is 20% or less or 18% or less or 15% or
less or 12% or less or 10% or less or 8% or less or 5% or less. In one example, the
percentage inhibition is about 18% or less. In one example, the percentage inhibition is
about 7% or less. In one example, the percentage inhibition is about 5% or less. In one
example, the percentage inhibition is assessed using a polypeptide sing DcR3
fused to an antibody Fc region. In one example, the TLla-binding protein is used at a
concentration of about 10ug/ml.
Neutralization Assays
Methods for identifying TLla-binding proteins that neutralize TLla activity
through DR3 will also be apparent to the skilled artisan, e. g., based on the description
herein.
For e, DR3-expressing cells (e. g., TF-l cells) (e.g., about 7x104 cells to
8x104 cells (e.g., 7.5x104 cells) are contacted with TLla and a protein synthesis
inhibitor (e. g. eximide) in the presence or absence of a TLla-binding protein to
be tested. The level of apoptosis of the cells is then assessed, e.g., by detecting
activation of caspases or propidium iodide uptake or other known assays. A TLla-
binding protein that s the level of apoptosis compared to the level of apoptosis in
the absence of the TLla-binding protein is considered to inhibit TLla activity or
neutralize TLla ty through DR3.
In some examples, various trations of the TLla-binding protein are tested
to determine the level of neutralization at different concentrations. In some examples,
the concentration at which 50% of the maximum inhibition of apoptosis by the TLla-
binding protein is ined (this concentration is known as ECso). In one example,
the EC50 of a TLla-binding protein of the sure is 3nM or less, for example, about
2.5nM or less, such as about 2.4nM or less, for example, about 2nM or less, such as
about 1.5nM or less, such as about 1nM or less. In one example, the EC50 of a TLla-
binding protein of the present disclosure about 0.99nM or less. In one example, the
EC50 of a TLla-binding protein of the present disclosure is about 0.6nM or less. In one
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example, the EC50 of a TLla-binding protein of the present sure is about 0.4nM
or less.
The ability of a TLla-binding protein of the disclosure to neutralize TLla-
activity can also be assessed by determining their ability to reduce cytokine secretion
by immune cells. For example, PBMCs are contacted with avalin A in the
presence or absence of a TLla-binding protein. The level of secretion of a TLlainduced
cytokine (e.g., eron y or IL-l3) is then assessed, e.g., using an ELISA.
Reduction of cytokine secretion in the presence of the TLla—binding protein compared
to in the absence of the protein indicates that the TLla-binding protein neutralizes
TLla activity.
In some examples, various concentrations of the TLla-binding n are tested
to determine the level of reduction in cytokine secretion at different concentrations. In
some examples, the concentration at which 50% of the maximum inhibition of cytokine
secretion by the TLla-binding protein is determined (this concentration is known as
EC50). For example, the EC50 for inhibiting secretion of interferon-y is 4nM or less,
such as 3nM or less or 2.5nm or less or 2nM or less. In another example, the EC50 for
inhibition of secretion of IL-13 is 15nM or less, such as 10nM or less, for example,
5nM or less, such as lnM or less. For example, the EC50 for inhibition of secretion of
IL-13 is 0.5nM or less.
Other assays for determining neutralization of TLla activity include determining
the level of proliferation, migration and tube formation of endothelial cells in the
presence and absence of the TLla-binding protein. For example, endothelial cells are
cultured in an extracellular matrix, e.g., MatrigelTM, and the level of migration and/or
tube formation is determined, e. g., using microscopy. An increase in migration and/or
tube formation in the presence of the TLla-binding protein compared to in the absence
of the TLla-binding protein tes that the inding n neutralizes TLla
activity through DR3.
In vivo elTM plug assays can also be med, e.g., essentially as
bed in Bagley et al., Cancer Res 63: 5866, 2003.
Additional assays include assessing the ability of a inding protein to
reduce or prevent interferon y secretion from peripheral blood T cells and/0r NK cells
stimulated with IL-12 and/orIL-18 or in FcyR activated monocytes.
In Vivo Assays
inding proteins of the present sure can also be assessed for
therapeutic cy in an animal model of a condition, e.g., a TLla-mediated
condition. For example, the TLla-binding protein is administered to a model of
inflammatory bowel disease or colitis (e.g., dextran sodium sulphate (DSS)-induced
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colitis or CD45Rb adoptive transfer model of colitis (e.g., Kanai et al., Inflamm. Bowel
Dis. 12: 89-99, 2006). In another example, a TLla-binding protein is stered to a
model of multiple sclerosis, e. g., EAE models in which a mouse or rat is immunized
with a myelin sheath protein or peptide derived therefrom (e.g., MOG, MBP or PLP)
and an immune response is generated against the protein y inducing a model of
multiple sclerosis. Exemplary EAE models are reviewed in, for example Tsunoda and
Fujinami, J. Neuropathol. Exp. . 55: 673-686, 1996. The TLla-binding protein
can also or atively be tested in a model of arthritis e.g., a SKG strain of mouse
(Sakaguchi et al., Nature 426: 454-460, 1995), rat type II collagen arthritis model,
mouse type II en arthritis model or antigen induced arthritis models (Bendele J.
Musculoskel. Neuron. Interact. 1: 377-385, 2001) and/or a model of inflammatory
airway disease (for example, OVA challenge or cockroach antigen challenge), or in a
model of inflammatory uveitis for example interphotoreceptor retinoid binding protein
immunization-induced uveoretinitis (Caspi, Curr Protoc Immunol r 15: unit
15.6, 2003).
The ability of a TLla-binding protein of the present disclosure to neutralize
TLla ty can also or alternatively be assessed in a model of graft-versus-host-
response, e.g., in which splenocytes from one animal are ed into an allogeneic
animal (e. g., a MHC or HLA unmatched animal).
Epitope Mapping Assays
In another example, the epitope bound by a protein described herein is .
Epitope mapping methods will be apparent to the skilled artisan. For e, a series
of overlapping peptides spanning the TLla sequence or a region thereof sing an
epitope of interest, e.g., peptides comprising 10 to 15 amino acids are produced. The
TLla-binding protein is then contacted to each peptide or a combination thereof and the
peptide(s) to which it binds determined. This permits determination of peptide(s)
comprising the epitope to which the inding protein binds. If multiple non-
contiguous peptides are bound by the protein, the protein may bind a conformational
epitope.
Alternatively, or in addition, amino acid residues within TLla are mutated, e. g.,
by e scanning mutagenesis, and mutations that reduce or t protein binding
are ined. Any mutation that reduces or prevents binding of the TLla-binding
protein is likely to be within the epitope bound by the n. A form of this method is
exemplified herein.
A further method involves binding TLla or a region thereof to an immobilized
TLla-binding protein of the present sure and digesting the resulting complex with
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proteases. Peptide that remains bound to the immobilized protein are then isolated and
analyzed, e. g., using mass spectrometry, to determine their ce.
Affinity Assays
Optionally, the dissociation constant (Kd) or association constant (Ka) or
equilibrium constant (KD) of a TLla-binding protein for TLla or a e comprising
an e thereof is determined. These constants for a TLla-binding protein are in one
example measured by a radiolabeled or fluorescently-labeled TLla binding assay. This
assay equilibrates the protein with a l concentration of labeled TLla in the
presence of a titration series of unlabeled TLla. Following g to remove
unbound TLla, the amount of label is determined.
ty measurements can be determined by standard methodology for antibody
reactions, for example, assays, surface n resonance (SPR) (Rich and
Myszka Curr. Opin. Biotechnol 11 : :54, 2000; Englebienne Analyst. 123: 1599, 1998),
isothermal titration calorimetry (ITC) or other c interaction assays known in the
art.
In one example, the constants are measured by using surface plasmon resonance
assays, e. g., using BIAcore surface plasmon resonance (BLAcore, Inc., Piscataway, NJ)
with immobilized TLla or a region thereof. Exemplary SPR methods are described in
US7229619.
In one example, a TLla-binding protein as described herein according to any
example has a KD for TLla of 100nM or less, such as 50nM or less, for example, 20nM
or less, for example, 10nM or less or 6nM or less. For example, a inding
protein has a KD of 5.5nM or less. For example, a TLla-binding protein has a KD of
5nM or less. For example, a inding protein has a KD of 4nM or less.
Half Life Assays
Some TLla-binding proteins encompassed by the present disclosure have an
improved half-life, e.g., are modified to extend their half-life compared to TLla-
binding proteins that are unmodified. Methods for determining a inding protein
with an improved half-life will be apparent to the skilled person. For example, the
ability of a TLla-binding protein to bind to a neonatal Fc receptor (FcRn) is assessed.
In this regard, increased binding affinity for FcRn increased the serum half-life of the
TLla-binding n (see for example, Kim et al., Eur. J. Immunol. 24: 2429, 1994).
The half-life of a TLla-binding protein of the disclosure can also be measured
by pharmacokinetic studies, e. g., according to the method described by Kim et al, Eur.
J. of Immunol. 24: 542, 1994. According to this method abeled TLla-binding
protein is injected intravenously into mice and its plasma concentration is periodically
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measured as a function of time, for example at 3 minutes to 72 hours after the injection.
The clearance curve thus obtained should be biphasic, that is, an alpha phase and beta
phase. For the determination of the in viva half-life of the TLla-binding protein, the
clearance rate in beta-phase is calculated and ed With that of the Wild type or
fied TLla-binding protein.
ity Assays
Stability of a TLla-binding protein of the disclosure can be assessed by any of a
variety of assays. For example, the TLla-binding protein is d to a ion,
e.g., heat or acid or stored for a period of time (e.g., 1 month) at room temperature.
Aggregation of the TLla-binding protein can then be assessed by determining turbidity
(with an increase in turbidity following exposure to the ion indicating instability),
size exclusion chromatography, non-reducing gel electrophoresis or a binding or
neutralization study described herein.
Pharmaceutical Compositions and Methods of ent
The TLla-binding protein of the present disclosure or nucleic acid encoding
same or cell expressing same (syn. active ingredient) is useful for parenteral, topical,
oral, or local administration, aerosol administration, or ermal administration, for
prophylactic or for therapeutic treatment.
Formulation of a TLla-binding protein or nucleic acid encoding same or cell
expressing same to be administered will vary according to the route of administration
and formulation (e. g., solution, emulsion, e) selected. An appropriate
pharmaceutical composition comprising TLla-binding protein or nucleic acid encoding
same or cell expressing same to be administered can be prepared in a logically
acceptable r. A mixture of TLla-binding proteins can also be used. For solutions
or emulsions, suitable carriers include, for example, aqueous or alcoholic/aqueous
solutions, emulsions or suspensions, ing saline and buffered media. Parenteral
vehicles can include sodium chloride solution, Ringer's dextrose, dextrose and sodium
chloride, lactated Ringer's or fixed oils. A variety of appropriate aqueous carriers are
known to the skilled n, including water, buffered saline, s (e.g., glycerol,
propylene glycol, liquid polyethylene glycol), dextrose solution and glycine.
enous vehicles can include various additives, preservatives, or fluid, nutrient or
electrolyte replenishers (See, lly, Remington's ceutical Science, 16th
Edition, Mack, Ed. 1980). The itions can optionally contain pharmaceutically
acceptable auxiliary substances as required to approximate physiological conditions
such as pH adjusting and buffering agents and ty adjusting agents, for example,
sodium acetate, sodium chloride, potassium chloride, calcium chloride and sodium
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lactate. The TLla-binding protein of this disclosure can be lized for storage and
reconstituted in a suitable carrier prior to use according to art-known lyophilization and
reconstitution ques.
The optimum concentration of the active ingredient(s) in the chosen medium can
be determined empirically, according to procedures well known to the skilled artisan,
and will depend on the ultimate pharmaceutical formulation desired.
The dosage ranges for the administration of the TLla-binding protein of the
disclosure are those large enough to produce the desired effect. For example, the
composition comprises a therapeutically or prophylactically effective amount of the
TLla-binding n or nucleic acid encoding same or cell expressing same.
As used , the term “effective amount” shall be taken to mean a sufficient
quantity of the TLla-binding protein, nucleic acid or cells to induce/increase or
t/reduce/prevent signaling of TLla in a t. The skilled artisan will be aware
that such an amount will vary depending on, for example, the TLla-binding protein,
nucleic acid or cells and/or the particular subject and/or the type or severity of a
condition being treated. Accordingly, this term is not to be construed to limit the
disclosure to a specific quantity, e.g., weight or number of TLla-binding proteins,
nucleic acids or cells.
As used , the term “therapeutically effective ” shall be taken to
mean a sufficient quantity of TLla-binding protein, nucleic acid or cells to reduce or
t one or more symptoms of a condition.
As used herein, the term “prophylactically ive amount” shall be taken to
mean a sufficient quantity of TLla-binding protein, nucleic acid or cells to prevent or
inhibit or delay the onset of one or more detectable symptoms of a condition.
The dosage should not be so large as to cause adverse side s, such as hyper
viscosity mes, pulmonary edema, congestive heart failure, and the like.
Generally, the dosage will vary with the age, condition, sex and extent of the disease in
the patient and can be determined by one of skill in the art. The dosage can be adjusted
by the individual physician in the event of any complication. Dosage can vary from
about 0.1 mg/kg to about 300 mg/kg, e.g., from about 0.2 mg/kg to about 200 mg/kg,
such as, from about 0.5 mg/kg to about 20 mg/kg, in one or more dose administrations
daily, for one or several days.
In one example, the TLla-binding protein is administered at a dosage of
between about lmg/kg to about 15mg/kg. In one example, the TLla-binding protein is
administered at a dosage of between about 2mg/kg to about 10mg/kg. In one example,
the TLla-binding n is administered subcutaneously or intravenously.
In some es, the TLla-binding protein or other active ingredient is
administered at an initial (or loading) dose which is higher than subsequent
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(maintenance doses). For example, the g molecule is administered at an l
dose of between about lmg/kg to about g. The binding molecule is then
administered at a maintenance dose of between about 0.0001mg/kg to about lmg/kg.
The nance doses may be administered every 7 to 35 days, such as, every 14 or
21 or 28 days.
In some examples, a dose escalation regime is used, in which a TLla-binding
protein or other active ingredient is initially administered at a lower dose than used in
subsequent doses. This dosage regime is useful in the case of t’s initially
suffering adverse events
In the case of a subject that is not adequately responding to treatment, multiple
doses in a week may be administered. Alternatively, or in addition, increasing doses
may be administered.
One or more TLla-binding proteins of the t disclosure can be
administered to an individual by an appropriate route, either alone or in combination
with (before, simultaneous with, or after) another drug or agent. For example, the
TLla-binding protein of the present disclosure can also be used in combination with
proteins, e.g., a TNF antagonist, an anti-IL-12/23 antibody, an anti-inflammatory, a
corticosteroid, methotrexate or a painkiller. The TLla-binding protein of the present
disclosure can be used as separately administered itions given in conjunction
with antibiotics and/or antimicrobial agents.
It will be appreciated by those skilled in the art that the TLla-binding proteins
of the present disclosure may be introduced into a subject by administering an
expression construct of the disclosure or a cell expressing a TLla-binding protein of the
disclosure. A y of methods can be used for introducing a nucleic acid encoding
the antibody into a target cell in viva. For example, the naked nucleic acid may be
injected at the target site, may be encapsulated into liposomes, or may be introduced by
way of a viral vector.
TLla Detection Assays
The following assays can be performed with a TLla-binding protein of the
disclosure, e.g., a TLla-binding protein ated to a detectable label as discussed
. Detection of TLla with an assay described herein is useful for diagnosing or
prognosing a ion.
An immunoassay is an exemplary assay format for diagnosing a condition in a
subject or ing TLla in a sample. The present disclosure plates any form
of immunoassay, including Western blotting, enzyme-linked immunosorbent assay
(ELISA), fluorescence-linked immunosorbent assay (FLISA), competition assay,
radioimmunoassay, lateral flow immunoassay, flow-through immunoassay,
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electrochemiluminescent assay, nephelometric-based assays, turbidometric-based
assay, and fluorescence activated cell g (FACS)-based assays.
One form of a suitable immunoassay is, for example, an ELISA or FLISA.
In one form such an assay involves lizing a inding protein of the
disclosure onto a solid matrix, such as, for example a polystyrene or polycarbonate
microwell or dipstick, a membrane, or a glass support (e. g. a glass slide). A test sample
is then brought into direct contact with the inding protein and TLla in the
sample is bound or captured. Following washing to remove any unbound protein in the
sample, a protein that binds to TLla at a distinct epitope is brought into direct contact
with the ed TLla. This detector protein is generally labeled with a detectable
reporter molecule, such as for example, an enzyme (e. g. adish peroxidase (HRP),
alkaline phosphatase (AP) or ctosidase) in the case of an ELISA or a phore
in the case of a FLISA. Alternatively, a second labeled protein can be used that binds to
the detector protein. Following washing to remove any unbound protein the detectable
reporter molecule is detected by the addition of a substrate in the case of an ELISA,
such as for example hydrogen peroxide, TMB, or toluidine, or 5-bromochloro
indol-beta-D—galaotopyranoside (x-gal). Of course, the immobilized (capture) protein
and the detector protein may be used in the opposite manner.
The level of the antigen in the sample is then determined using a standard curve
that has been produced using known quantities of the marker or by comparison to a
l sample.
The assays described above are readily modified to use chemiluminescence or
electrochemiluminescence as the basis for detection.
As will be apparent to the skilled artisan, other detection methods based on an
immunosorbent assay are useful in the performance of the present disclosure. For
example, an immunosorbent method based on the description supra using a radiolabel
for detection, or a gold label (e.g. colloidal gold) for detection, or a liposome, for
example, encapsulating NAD+ for detection or an acridinium linked immunosorbent
assay.
In some examples of the disclosure, the level of TLla is ined using a
surface plasmon resonance detector (e.g., BIAcoreTM, GE Healthcare, away,
N.J.), a flow through , for example, as bed in US7205159; a micro- or
nano-immunoassay device (e.g., as described in US20030124619); a l flow
devices (e.g., as described in US20040228761 or US20040265926); a cence
polarization immunoassay (FPIA e. g., as described in US4593089 or US4751190); or
an immunoturbidimetric assay (e. g., as described in US5571728 or US6248597).
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Samples and l s
As will be apparent to the skilled artisan, some of the examples described herein
require some degree of quantification to determine the level of TLla. Such
quantification may be determined by the inclusion of a suitable control sample in an
assay of the disclosure.
In one example, a suitable control sample is a sample that is derived from a
healthy subject or a normal subject.
In the t context, the term “healthy subject” shall be taken to mean an
individual who is known not to suffer from a condition associated with TLla, e.g., an
inflammatory condition.
The term “normal subject” shall be taken to mean an individual having a normal
level of TLla in a sample compared to a population of individuals.
The present sure also contemplates the control sample as being a data set
obtained from a normal and/or healthy subject or a population of normal and/or healthy
subjects.
In one example, a method of the disclosure additionally comprises determining
the level of TLla in a control , e.g., using a method described herein.
In one example, a sample from the subject and a control sample are assayed at
approximately or ntially the same time.
In one example, the sample from the subject and the control sample are assayed
using the same method of the disclosure as described herein in any one or more
examples to allow for ison of results.
Conditions
Exemplary conditions that can be treated/prevented/diagnosed/prognosed by
ming a method of the disclosure include autoimmune diseases, inflammatory
conditions, and conditions characterized by insufficient angiogenesis.
In one example, the condition is an autoimmune disease.
Exemplary conditions include inflammatory bowel disease (IBD), irritable
bowel syndrome (IBS), Crohn’s disease, ulcerative colitis, diverticular disease,
systemic lupus erythematosus, rheumatoid tis, juvenile chronic arthritis,
spondyloarthropathies, systemic sis (scleroderma), thic inflammatory
myopathies (dermatomyositis, polymyositis), Sjogren's syndrome, ic vasculitis,
sarcoidosis, demyelinating diseases of the central and peripheral nervous systems such
as le sclerosis, idiopathic polyneuropathy, autoimmune or immune-mediated eye
disease such as autoimmune uveitis and s associated with various vasculitides,
autoimmune or -mediated skin diseases including bullous skin diseases,
erythema multiforme and contact dermatitis, psoriasis, allergic diseases of the lung
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such as asthma, airway hypersensitivity, eosinophilic pneumonia, chronic obstructive
pulmonary disease (COPD), idiopathic ary fibrosis and hypersensitivity
pneumonitis, atherosclerosis or graft versus host disease.
In one example, the ion is arthritis, e.g., rheumatoid arthritis, polyarthritis,
osteoarthritis or a spondyloarthropathy. In this regard, Bull et al., J. Exp. Med. 205:
2457, 2008 have shown that antibodies that antagonize TLla are useful for the
treatment of rheumatoid arthritis. The ive nature of the TLla-binding proteins of
the present disclosure make them useful for treating rheumatoid arthritis.
In one example, the condition is multiple sclerosis. In this regard,
0317388 shows that mice deficient in TLla do not develop experimental
mune encephalomyelitis (EAE), which is an accepted model of multiple
sclerosis.
In one example, the inflammatory ion is an inflammatory mucosal
ion, e.g., an inflammatory disease of the bowel (e.g., inflammatory bowel
disease, Crohn’s disease or ulcerative colitis), or an inflammatory disease of the lung
(e. g., airway hyperreactivity or asthma).
In one example, the condition is inflammatory bowel disease and/or colitis. In
this regard, Takedatsu et (1]., Gastroenterology 135: 552, 2008 have shown that
antibodies that antagonize TLla are useful for the treatment of colitis.
In one example, the condition is asthma or airway hypersensitivity or chronic
obstructive pulmonary disease .
In another example, the condition is an inflammatory skin disease (e.g., an
autoimmune or immune-mediated skin disease), e. g., a bullous skin diseases, erythema
multiforme, contact dermatitis. Alternatively, the skin e is psoriasis.
Exemplary conditions characterized by insufficient angiogenesis include
cardiovascular disease, autoimmune conditions (e.g., rheumatoid arthritis, psoriatic
arthritis, systemic lupus erythematosus (SLE) and systemic sclerosis), antineutrophil
cytoplasmic antibodies (ANCA)-associated vasculitis, ischemia (including ischemia
resulting from a transplant) or necrosis.
Kits
The present disclosure additionally comprises a kit comprising one or more of
the ing:
(i) a TLla-binding protein of the disclosure or expression construct(s) ng
same;
(ii) a cell of the disclosure; or
(iii) a ceutical composition of the disclosure.
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In the case of a kit for detecting TLla, the kit can additionally comprise a
detection means, e. g., linked to a TLla-binding protein of the disclosure.
In the case of a kit for eutic/prophylactic use, the kit can additionally
comprise a pharmaceutically acceptable carrier.
Optionally a kit of the disclosure is packaged with instructions for use in a
method described herein according to any example.
The present disclosure includes the following non-limiting Examples.
Example 1: Materials and Methods
In the following examples, nce to a position of a residue is a reference to
the position in the relevant sequence as set forth herein, unless otherwise indicated.
1.1 /pTT5 Expression System
For all transfections involving the HEK293E/pTT5 expression system
(Durocher et (11., Nucl. Acids Res., 30: E9, 2002) cells were cultured in
complete cell growth media (1 L of F17 medium (Invitrogen), 9 ml of ic F68
(Invitrogen), 2mM ine containing 20% (w/v) Tryptone NI (Organotechnie) with
GeneticinTM (50 mg/ml, Invitrogen) at 50 ill/100 ml culture). At the day before
transfection, the cells were harvested by centrifugation and re-suspended in fresh media
without GeneticinTM. The next day, DNA was mixed with a commercial transfection
reagent and the DNA transfection mix added to the culture drop-wise. The culture was
ted ovemight at 37°C, 5% C02 and 1201pm t GeneticinTM. The next day
12.5 ml of Tryptone and 250 pl of GeneticinTM were added per 500 ml culture. The
culture was incubated at 37°C, 5% C02 and 120rpm for seven days, then the
supematants were harvested and purified.
1.2 TLla Protein
Human TLla was purchased (Peprotech and Genscript: both expressed)
or ed in the mammalian HEK293E/pTT5 expression system, using a DNA
expression construct coding for the extracellular domain (ECD) of human TLla with an
N-terminally located HIS and FLAG tag (SEQ ID NO: 1). Culture supernatant
containing the secreted TLla protein was harvested by centrifugation at 2000g for 10
mins to remove the cells. The TLla n was purified from the supernatant using a
HisTrapTM HP column (GE Healthcare). The eluted protein was buffer-exchanged into
PBS using a HiLoad 16/60 Superdex 200 prep grade column (GE Healthcare) and
~70kDa fraction was separated by gel filtration on a HiLoad 26/60 Superdex 200 prep
grade column (GE Healthcare).
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For phage display ments, recombinant human TLla (Peprotech, Genscript
HEK293E-derived) was biotinylated using an EZ-link Sulfo-NHS-LC—biotin kit
(Pierce) at a 3:1 ratio of biotin:TL1a. Free biotin was removed from the protein
preparation by dialysis against PBS using a Slide-A-Lyzer dialysis cassette with a 3.5
kDa molecular weight cut-off.
TLla was also produced with a tag that allowed for single site ylation.
This TLla protein was expressed in HEK-293 cells and ed as described
previously. It was then biotinylated using a enzyme that ively incorporates a
biotin on the TLla protein.
1.3 Phage Display
Antibodies that bind specifically to TLla were isolated from a naive phagemid
library comprising more than 10x1010 individual human FAb fragments.
Lla dies were isolated from the phage display library over the
course of several panning ‘campaigns’ (i.e. discrete phage display experiments with
different reagents or panning ions). The general protocol followed the method
outlined by Marks and Bradbury (Methods M01. Biol. 248: 161-176, 2004)
Each phage display campaign involved three rounds of g. For each round,
~1x1013 phage particles were blocked by mixing 1:1 with blocking buffer (5% skim
milk in phosphate buffered saline (PBS) pH 7.4) and incubating for 1 hr at room
temperature. The blocked phage y was then pre-depleted for streptavidin binders
by incubation for 45 mins with 100 ML of avidin-coupled Dynabeads (Invitrogen),
which were blocked as described for the library. The beads (and streptavidin binders
attached to them) were discarded after the tion step.
Recombinant human TLla antigen was prepared for panning by capture onto the
surface of streptavidin-coupled Dynabeads (Invitrogen). To achieve this, 10 to 100
pmol of biotinlyated TLla was incubated with 100 ML of beads for 45 mins at room
temperature. The resulting TLla-bead complexes were washed with PBS to remove
free TL1a and then used in the subsequent panning reaction.
Library panning was conducted by mixing the blocked and pleted library
with the TLla-bead complexes in a 1.5 mL entrifuge tube and rotating for 2 hrs
at room temperature. Non-specifically bound phage were removed using a series of
washes. Each wash ed pulling the bead complexes from the solution onto the
tube wall using a magnetic rack, aspirating the supernatant and then pending the
beads in fresh wash buffer. This was repeated a number of times with either PBS wash
buffer (PBS with 0.5% skim milk) or PBS-T wash buffer (PBS with 0.05% TWEEN-20
(Sigma) and 0.5% skim milk). Phage that remained bound after the washing process
were eluted from the TLla-bead complexes by incubation with 0.5 mL of 100 mM
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triethylamine (TEA) (Merck) for 20 mins at room ature. The eluted ‘output’
phage were neutralized by adding 0.25 mL of 1 M Tris-HCl pH 7.4 (Sigma).
At the end of the first and second rounds of panning, the output phage were
added to a 10 mL culture of exponentially growing TG1 E. coli (yeast-tryptone (YT)
growth media) and allowed to infect the cells by incubating for 30 mins at 370C
without shaking, then with shaking at 250 rpm for 30 mins. The phagemids encoding
the phage display output were then d as phage particles following a standard
protocol (Marks and Bradbury, .
At the end of the third g round TGl cells were infected with output
phage, but the cells were plated on solid YT growth media (supplemented with 2%
glucose and 100 ug/mL carbenicillin) at a sufficient dilution to produce discrete E. coli
es. These colonies were used to inoculate 1 mL liquid cultures to allow
expression of FAb fragments for use in screening ments.
1.4 sed Screening of FAbs for TLla Binding
Each individual E. coli colony was used to express a FAb that could be screened
for TL1a binding activity. Colonies were inoculated into 1 mL YT starter cultures
(supplemented with 100 ug/mL carbenicillin and 2% glucose) in 96-well deepwell
plates (Costar) and incubated overnight at 300C with shaking at 650 rpm. These starter
cultures were diluted 1:50 into a 1 mL expression culture (YT supplemented with 100
ug/mL carbenicillin only) and grown to an optical density of 0.8 to 1.0 at 600 nm. FAb
expression was induced by adding isopropyl-beta-D-thiogalactopyranoside to a final
concentration of 1 mM. Cultures were incubated at 200C for 16 hrs.
FAb samples were ed by harvesting cells by centrifugation (2500g, 10
mins) and ming a periplasmic extraction. The cell pellet was resuspended in 75
LLL of extraction buffer (30mM Tris-HCl, pH 8.0, 1mM EDTA, 20% Sucrose) and
shaken at 1000 rpm for 10 mins at 40C. Extract preparation was completed by adding
225 uL of H20, shaking at 1000 rpm for 1 hr and clearing the extract by centrifugation
at 2500g for 10 mins. The supernatants were recovered, filtered through Acroprep 100
kDa molecular-weight cutoff plates (Pall ation) and stored at 40C until required
for r experiments.
The FAb samples were screened for TLla-binding ty using a surface
n resonance (SPR) assay. High-throughput SPR screening was conducted using
a BIAcore 4000 Biosensor (GE Healthcare) in a single concentration analyte pass
assay. Approximately 10,000 RU of antiV5 antibody (Invitrogen cat#R960CUS) was
immobilized on a CM5 Series S Sensor chip, using standard amine ng chemistry
at pH 5.5 on spots 1, 2, 4 & 5 of each of the four flow cells leaving spot 3 unmodified.
The running buffer used was HBS-EP+ (GE Healthcare) and all interactions measured
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at 25°C and data collection rate set to 10Hz. Crude periplasmic preparations of V5-
tagged FAbs, were d two-fold in running buffer before capturing at a flow rate of
10ul/min for 100 sec (typically around 200RU of FAb was captured) on spot 1 or 5 of
each flow cell. Following a short stabilization period, human TLla trimer was passed
over all spots of all four flow cells simultaneously at a flow rate of 30ul/min for
100sec. Dissociation of the interaction was measured for 100sec prior to regeneration
back to the antiV5 antibody using a 30sec pulse of 100mM phosphoric acid. Generated
sensorgrams were referenced against an adjacent antiV5 antibody spot for each flow
cell, and fitted using a 1:1 Langmuir equation to determine ka, kd and KD.
The data from the SPR screening process was used to select potential TLla-
binders. FAb kd values were ranked and up to 200 of the strongest s were
submitted for DNA sequence analysis. FAb with unique sequences were ed for
conversion to full-length human IgG1 antibodies.
1.5 Variable Region cing
DNA sequencing was conducted by the Applied Genetic Diagnostics group at
the Melbourne sity Department of Pathology (Melbourne, Australia). id
DNA (~500 ng) was mixed with 5 pmols of the appropriate primer for sequencing
either the Fab VH or VL chain. Sequencing reactions were conducted using a BigDye®
Terminator v3.1 Cycle cing Kit (Applied Biosystems) according to
manufacturer’s instructions. Samples were analyzed by capillary separation on 3130xl
Genetic Analyzers (Applied Biosystems). Sequence chromatogram data was analyzed
using the Chromas Lite software package (Technelysium, Brisbane, QLD, Australia).
Sequence text files were translated to amino acid sequences and analyzed using the
t software package (Xoma, Berkely, CA, USA).
1.6 Construction of Vectors Expressing Antibodies
VH amino acid chains were expressed with a human constant region (human
IgG1 heavy chain CH1, hinge, CH2 and CH3 domains (e.g., SwissProt No. P01857)).
This was ed by back-translation of amino acid sequences into DNA sequences
which were synthesized de novo by assembly of tic oligonucleotides. Following
gene synthesis the whole sequence was subcloned into the le cloning site of the
pTT5 heavy chain vector (Durocher et al., Nucl. Acids Res. 30: E9, 2002). VL amino
acid chains were expressed with a human kappa light chain constant region (SwissProt
No. P018341) or a human lambda light chain constant region (SwissProt No.
POCG05.1) by ning the sequence into the multiple cloning site of the pTT5 light
chain vector.
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Alternatively, FAb VH and VL sequences were amplified directly from phagemid
DNA by PCR and subcloned into IgG expression vectors. PCR reactions were carried
out using a Platinum PCR Supermix kit rogen) as per manufacturer’s ctions.
Approximately 50ng of template phagemid DNA encoding a FAb was mixed with
pmols of the appropriate forward and reverse PCR s and the PCR Supermix
reagent to a final volume of 50uL. Each reaction used a sequence-specific d
primer ed with a c VH or VL specific reverse primer. To facilitate cloning
into IgG expression vectors, primers for VH amplification were designed to add 5’
BsiWI and 3’ Nhel restriction enzyme sites, primers for VL-kappa amplification added
5’ BssHII and 3’ BsiWI sites and primers for VL-lambda ication added 5’ BssHII
and 3’ Aer sites.
PCRs were carried out in thin-walled PCR (96-well GeneAmp® PCR system
9700, Applied Biosystems, Scoresby, ia, Australia). Cycling conditions
comprised an l five minute denaturation step at 94°C, followed by 30
amplification cycles (denaturation at 94°C for 30 seconds, followed by primer
annealing at 55°C for 30 seconds, then extension at 68°C for 30 to 90 seconds), and a
final extension step at 68°C for seven minutes. The amplified VH genes were purified
using a Minelute PCR purification kit (Qiagen), digested with BsiWI and Nhel s
(New England Biolabs) and re-purified using a Minelute Reaction Clean-up kit
(Qiagen). Amplified pa genes were prepared similarly, but digestion was carried
out using BssHII and Bsin. ied VL-lambda genes were also prepared in the
same way, but digested with BssHII and Avrll. The resulting VH and VL gene fragments
were cloned into the multicloning site of the appropriate pTT5 heavy or light chain
vector (either kappa or lambda light chain), as described above.
1.7 Expression and Purification of Antibodies
Heavy and light chain DNA were co-transfected into the HEK293/pTT5
expression system and cultured for seven days. The supematants derived from these
transfections were adjusted to pH 7.4 before being loaded onto a HiTrap Protein A
column (5 ml, GE Healthcare). The column was washed with 50 ml of PBS (pH 7.4).
Elution was med using 0.1M citric acid pH 2.5. The eluted antibody was desalted
using Zeba Desalting columns (Pierce) into PBS (pH 7.4). The antibody was analyzed
using SDS-PAGE. The concentration of the antibody was determined using a BCA
assay kit (Pierce). For conversion between antibody concentrations in ug/ml and molar
concentrations an assumed molecular weight of 150kDa was used for all antibodies.
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1.8 TF-l Cell line Potency Assay
To determine which anti-TLla antibodies functionally lize the ical
ty of TLla, antibodies were tested for their ability to neutralize TLla-induced
apoptosis in a TF-l cell line. The TF-l human erythroleukemic cell line (ATCC: CRL-
2003) was maintained in culture under standard conditions. TF-l cells 04/well)
were incubated in black-sided 96-well plates (Greiner) with recombinant human TLla
100ng/ml and cycloheximide 10ug/ml to induce apoptosis. Test antibodies at a
concentration of 10ug/mL (66.7nM) or less were added to the plates and incubated for
4 to 5 hours. ion of apoptosis was then assessed using the Homogeneous
es Kit (Roche) according to manufacturer’s instructions. In experiments to test
the y of antibodies to neutralize function of TLla from cynomolgus and rhesus
macaque, mouse, rat, guinea pig, pig or rabbit, the appropriate species TLla was
substituted for human TLla in this ol.
Data were normalized by expression as a percentage of maximum apoptosis
(apoptosis levels achieved by recombinant human TLla plus eximide in the
absence of anti-TLla antibody).
1.9 Receptor Selectivity of Lead Antibodies
TLla binds both to its cognate signaling receptor, DR3, and to a decoy receptor,
DcR3, which also serves as a decoy receptor for TNF family members Fas-L and
LIGHT.
Antibodies were assessed for their ability to inhibit binding of TLla to its
receptors in a competition ELISA. DR3/Fc Chimera (R&D Systems) or DcR3/Fc
Chimera (R&D Systems) was coated onto a 96-well plate (Maxisorp, Nunc) at a
concentration of 2ug/ml. Serially diluted test antibodies were pre-incubated with
single-site biotinylated recombinant human TLla lug/ml for 30 minutes then added to
the DR3/Fc or DcR3/Fc coated wells. Bound TLla was detected using avidin-
horseradish peroxidase 1:2000 (BD Pharmingen). Data were ized by expression
as a percentage of maximum binding of TLla to receptor in the absence of Lla
dy.
An antibody described to inhibit TLla activity (1B4; which has a VH comprising
a sequence set forth in SEQ ID NO: 119 and a VL comprising a sequence set forth in
SEQ ID NO: 120, which is described in and US patent application
publication US 200900280116) was included in assays for comparison
1.10 Epitope Mapping
Epitope mapping was performed using alanine scanning experiments. Modeling
analysis was carried out to determine probable exposed residues on TLla. TLla
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constructs were then designed in which each of these theoretically exposed residues
was substituted with an alanine. These constructs were then expressed and supernatant
from the expression cultures tested for protein expression and binding to anti-TLla
antibody C320 using SPR. A Ni-NTA sensor chip (Biacore) was used to capture the
HIS tagged TLla mutein from the supernatant of transfected HEK-293E cells. The
mutein was ed on flow cell 2 (or 4) and then C320 was passed over flow cell 1+2
(or 3+4). The mutein expression (RU) was determined as the change in RU at the end
of injection of the mutein. The C320 binding (RU) was ined as the change in RU
determined at the end of the C320 injection.
TLla constructs that expressed but had apparently lost binding to C320 were re-
transfected and purified for testing by ELISA. ELISA plates were coated with
polyclonal rabbit anti-human TLla tech) (lug/ml), DR3/Fc chimera (R&D
systems) (2ug/ml) or c chimera (R&D s) (lug/ml). TLla s or
unsubstituted TL1a were added to the plates at a concentration of lug/ml. Bound TLla
was then detected with biotinylated onal rabbit anti-human TLla (Peprotech)
(250ng/ml) and streptaVidin-horseradish peroxidase (BD Pharmingen) 1:2000.
Constructs that could be detected by polyclonal anti-TLla were deemed to have
expressed and folded riately. riately expressed and folded constructs that
did not bind to one or either of the receptors were considered to be important for TLla
binding to that receptor. Binding of test antibodies to TLla muteins was tested by direct
ELISA. ELISA plates were coated with different TLla muteins (lug/ml). Serially
diluted test antibodies were then added, and bound antibodies were detected with anti-
human IgG-horseradish peroxidase (InVitrogen) 1:2000. Binding of test antibodies to
different TLla isoforms was detected using the same method.
1.11 Creation of Membrane Bound TLla mbTLla -Ex ressin Cell Line
HEK 293 cells were oporated with a vector containing a sequence
ng full length TLla (SEQ ID NO: 123) and maintained in ive media (media
supplemented with blasticidin 6ug/ml). After multiple passages, the cells were tested
for cell surface expression of TL1a by flow cytometry. 2.5x105 cells per well were
plated into 96-well round bottom plates (Corning) and incubated with biotinylated
polyclonal rabbit anti-human TLla (Peprotech) on ice for 30 minutes. Samples were
washed then incubated with streptaVidin-PITC for a further 30 minutes on ice. Samples
were then washed, resuspended and data acquired on a flow cytometer.
1.12 Flow Cytometry Detection
After stable cell surface expression of TLla had been confirmed (as described in
Example 1.10), antibodies C320, C321 and C323 were screened using both transfected
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and sfected cells (2.5x105 cells per well in 96-well round bottom plates
(Coming)) at decreasing concentrations starting from lOug/ml. Polyclonal goat anti-
human IgG-PTTC (Sigma) at a dilution of 1:200 was used as ion antibody. Anti-
TLla antibody 1B4 was included for comparison.
1.13 Inhibition of Cytokine Production
To further terize antibodies described herein, their function on primary
human cells was tested. To m endogenous TLla production, PBMCs were
ed from buffy coats over a lymphoprep (Nycomed) gradient and cultured in 96-
well tissue culture plates (Corning) with Concanavalin A at decreasing concentrations
starting from 2ug/ml. Plates were incubated overnight then supernatants were harvested
and assayed for TLla using the human TLla ELISA kit (Peprotech).
onally, adherent cells were harvested and assessed for TLla expression by
flow cytometry using biotinylated anti-human TLla (Peprotech) 1:100 and
avidin-FITC (Zymed) 1:200.
1.14 Isoelectric ng gel experiments
Isoelectric focusing gels were performed using the NOVEX© Xcell SurelockTM
system (Life Technologies) according to manufacturer’s instructions.
1.15 ProteinAHPLC
Supernatants from HEK-293E cells transfected to transiently express antibodies
were analysed by Protein A HPLC using a POROS A/20 2.1x30mm Id column
(Applied Biosystems) connected to an Agilent 1100 chromatography system. The
column was equilibrated with phosphate buffered saline (PBS) pH7.4, 0.2 ml of HEK-
293E supernatant containing protein was loaded and the protein eluted with PBS
adjusted to pH 2.2. The chromatograms at the wavelengths of 215 nm or 280 nm were
integrated using the manufacturer’s software and the area under the curve (AUC)
reported.
1.16 Antibody expression and antigen binding as determined by SPR
Using a CM5 sensor chip (Biacore) Protein A was coupled to the chip e
using amine coupling. n A was coupled on flow cell 1 and 2 (or alternatively 3
and 4) using a Biacore 3000. Cell supernatant for HEK-293 cells containing antibody
were passed over the surface of flow cell 2, while buffer (HBS-EP) was passed over
flow cell 1. At the end of injection of the atant the change in response units was
measured. This value is reported as Protein A capture (SPR). The % expression is the
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Protein A capture (SPR) of the tested antibody as a percentage of the Protein A capture
(SPR) of C320 in the same experiment. To determine if the antibody binds TLla, the
TL1a was then passed over the flow cell 1 and 2. The sensorgrams were double
referenced (Flow cell 2 is subtracted from flow cell 1 and a buffer blank).
Example 2: Results of Phage Display
Phage display campaigns were conducted against recombinant human TLla. Six
discreet campaigns were conducted using recombinant bacterial-expressed recombinant
TLla. A low number of FAbs were isolated that bound to TLla, with no lizing
antibodies ed.
Subsequent campaigns were conducted with mammalian-expressed TLla. The
percentage of FAbs isolated that bound TL1a was substantially higher using
ian derived TL1a than bacterially derived TLla. The number of FAbs that
were shown to be positive for TL1a binding across the total phage display campaigns
was in excess of 200. From these, 55 FAbs with unique sequences were identified, of
which 29 were selected for conversion to full length IgG1 antibody.
Example 3: Neutralization of TLla Activity
The ability of full length IgG1 antibodies comprising FAbs isolated using phage
display to inhibit or reduce TL1a-induced apoptosis was assessed as described above
(Example 1.8). Under these conditions, 15/29 of the antibodies tested showed better
than 50% inhibition of TLla-induced apoptosis (Figure 2). These antibodies included:
C319, C320, C321, C323, C333, C334, C335, C336.
These data trate that while dies can be isolated that bind to TLla,
only a limited subset of these dies have the icity ed to functionally
inhibit TLla activity.
Within the group of dies that demonstrated inhibition of recombinant
human TLla, the relative inhibition profile of each antibody was assessed using the
EC50 value (Table 4 and Figure 3). Only antibodies C320, C321 and C323 had an
inhibitory EC50 value of 1nM or below.
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Table 4: Antibody EC50 values for inhibition of TL1a-induced apoptosis
Variable
le Light Chain
Antibody Heavy Chain (SEQ ID
Designation (SEQ ID NO) NO) ECso (nM)
C336 2 6 4.05
C334 10
C333 18
C323 26
C321 34
C320 42
C319 50
1B4 74 75 3.37
e 4: Receptor Selectivity
Antibodies C320, C321 and C323 inhibit interaction of TL1a with DR3 (Figure
4A) but do not inhibit interaction of TL1a with DcR3 (Figure 4B). Using the same
assay, antibodies C319, C333, C334 and C336 were shown to demonstrate the same
ive neutralization.
Using a similar assay the binding of antibodies C320 and derivatives thereof
described below, particularly C320-168 and C320-179, were shown to inhibit
interaction of TL1a with DR3 (Figure 4C) with an EC50 1 nM or less. These antibodies
also did not inhibit interaction of TL1a with DcR3 (Figure 4D) when tested at
concentrations ranging from 0.1 ug/mL to 100 ug/mL. These s contrast with
those of antibodies C300-25 and 1B4. In this , antibody C300-25 is a rat
monoclonal antibody produced by the inventors.
Table 5: Antibody EC50 values for inhibition of TL1a interaction with receptors DR3
and DcR3
Antibody ECso (nM)
DR3 DcR3
C320 0.97 DNI
C320-179 0.72 DNI
C320-168 0.97 DNI
13.5 9.84
1B4 17.8 26.5
DNI — did not inhibit
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DR3 and DcR3 have been shown to e for g to TLla. Therefore it
was unexpected that antibodies have been isolated with icity, targeting an epitope
on TLla that is neutralizing for DR3, but not DcR3. These results indicate that
antibodies described herein are capable of preventing TLla activity through its cognate
receptor DR3 without disturbing either the natural antagonistic function of DcR3 or a
homeostatic balance of DcR3 binding. t being bound by any theory or mode of
action, such selective tion may be biologically relevant because DcR3 tes
the amount of free Fas-L and LIGHT available for binding to their cognate ing
receptors (Fas and H-VEM, respectively). Consequently, inhibiting the interaction
between TLla and DcR3 could increase the amount of Fas-L and LIGHT bound by
DcR3 thus decreasing the amount available for signaling through their cognate
receptors. As Fas-mediated killing plays a role in cancer surveillance, potential
downstream consequences of increasing the amount of DcR3 to bind to Fas-L could
include increased susceptibility to cancer. Again, without being bound by theory or
mode of action, isolating antibodies that specifically inhibit interaction of TLla and
DR3, but not DcR3, could be ageous in treating disease but without
compromising safety.
Example 5: e Mapping
Amino acid substitutions were introduced into the sequence of soluble TLla
(SEQ ID NO: 202) to generate a series of TLla muteins.
Using the SPR-based mutein analysis assay described in Example 1.10, TLla
muteins in supematants from transfected HEK-293E cells were tested for expression
levels and binding to C320. The results are presented in Table 6.
Table 6: sion and binding of soluble human TLla and muteins thereof to
antibody C320
Mutein C320 Mutein C320
Amino acid Expression Binding Amino acid Expression Binding
substitution (RU) (RU) substitution (RU) (RU)
Wild Type 3244.9 125.6 A558 2933.1 33.2
LlA 3264.3 115 A55L 2746.5 -7.6
K2A 3094.4 152 A55R 2307.7 -12.3
Q4A 3366.2 120 A55G 1991.2 -5.8
BSA 3086.5 360.4 A55D 2386.5 -21.1
F6A 2948.3 240.2 T57A 3335.6 42.7
P8A 3455.9 124.3 K58A 3241.5 4.3
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Mutein C320 Mutein C320
Amino acid Expression g Amino acid Expression Binding
substitution (RU) (RU) substitution (RU) (RU)
S9A 3594.2 94.5 N59A 3382.9 73.8
H10A 3372.5 122.7 R60A 3405.8 116.5
Q11A 3572.9 71.4 N62A 3264.9 117.4
Q12A 3098.5 193.8 T64A 3083.6 289.8
V13A 3213.9 167.8 N65A 3226.8 156.6
Y14A 2883.5 401 K66A 3183.3 27.1
P16A 2938 225 F67A 3216.1 304.7
L17A 2904.1 194.5 L69A 3389.8 212.6
R18A 3102.5 132.2 E72A 3171.5 136.2
D20A 3247.6 154.6 S73A 3129.3 146
G218 2915.3 184.8 R85A 3047.1 -33.5
G21L 3424.4 72.8 M87A 3161.2 46.1
G21R 3197 116.2 S89A 3600.3 10.8
G21A 3483 85 E90A 3129.7 1089.1
G21D 3032 158.6 E93A 3181.6 343.9
D22A 3185.6 169.8 I94A 3125.1 352.3
R32A 3103.7 -36.5 R95A 3634.8 28.8
T34A 3278.7 389.2 Q96A 3256.5 149.4
P35A 3385 -28.6 R99A 3351.3 105.2
T36A 2771.9 486.1 P100A 2898.5 199.5
Q37A 2789.3 319.2 K102A 3420.8 155.7
H38A 3133 147.4 D104A 2982.9 533.2
F39A 2509.8 445.5 S105A 3425.8 127.1
K40A 3213.5 55.5 D115A 3648.5 110.1
N41A 2967.5 248.5 S116A 2962.4 282.1
Q42A 3073 175.7 Y117A 3323.8 189.8
F43A 3245.8 109.3 P118A 3254.9 161.7
P44A 3180.1 200.4 E119A 3263.7 278.5
A458 3407.3 61.5 P120A 3143 164.8
A45L 3087.7 35.6 Q122A 3189 148.5
A45R 3167 107.2 S135A 3109.4 95.4
A45G 3385.9 77.1 F138A 3496.7 21
A45D 3395.1 38.9 S148A 2883.9 228.7
H47A 3466.4 159.1 Q150A 3151.1 193.5
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Mutein C320 Mutein C320
Amino acid Expression Binding Amino acid Expression Binding
substitution (RU) (RU) substitution (RU) (RU)
H50A 3249.3 132.4 E151A 3796.5 90.8
E51A 3136.5 33.8 K154A 3610.3 86.7
L52A 3105.5 52.7 S160A 1272.2 901.6
G53S 3238.5 19 D161A 3391.4 223.4
G53L 1299.7 -3.9 1162A 3139.2 72.4
G53R 3796.7 7.2 S163A 3054 481
G53A 3652.4 -4.8 Y167A 2942.2 70.7
G53D 2130.3 -6.1 T168A 3335.1 2.6
K169A 3005 69.7
E170A 3418.7 16
Muteins that expressed well (Mutein expression greater than 2000 RU) but
failed to bind antibody C320 (TL1a binding less than 17 RU) were selected for further
analysis.
Muteins with substitutions at amino acids G53 and A55 expressed poorly and
had reduced binding to polyclonal anti-TLla, suggesting that these are important
es for TL1a structural integrity. The other muteins all expressed adequately,
bound polyclonal anti-TLla and ran lently to wild-type TL1a on both reducing
and ducing SDS-PAGE gels. These characteristics all suggest that the s
were appropriately sed and folded into TLla proteins.
The muteins exhibited differential binding patterns to the different monoclonal
anti-TLla antibodies described herein. Antibodies C320, C320-168 and C320-179 did
not detectably bind to the R32A and R85A muteins or to a mutein containing both of
these substitutions e 5A and B). C320 also showed negligible binding to the
P35A, T168A and E170A muteins while 68 and C320-179 had reduced binding
to these muteins but not to the same extent as C320. In contrast, TLla-binding
antibodies 1B4 and 16H2 showed binding to the muteins R32A, R85A, P35A, T168A
at greater than 50% of the wild-type TLla, indicating that amino acids at these
positions are not crucial to the binding of 1B4 and 16H2 to TLla.
Given that the antibodies C320, C320-168 and C320-179 inhibit the binding of
TL1a to DR3 but not DcR3, the dies are likely bind to amino acids involved in
the binding of DR3 to TL1a and disrupt this interaction. DR3, but not DcR3, had
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significantly decreased binding to the R32A and R85A muteins, suggesting that these
residues are involved with TL1a binding to DR3 e 5C).
The binding site of the dies C320, C320-168 and C320-179 on TL1a is
illustrated in Figure 5D. As can be seen from the diagram, the residues R32 and R85,
while being distant in primary amino acid sequence are located adjacent to each other
in the protein’s tertiary structure. Hence, these can be considered key residues within
the e on TLla to which the antibodies C320, C320-168 and C320-179 bind.
Example 6 — Characterization of dies Binding to Cell-Surface TLla
TLla, like most TNF-ligand superfamily members, is present as a cell surface
form that is cleaved to generate e TL1a and as for other members the membrane
form of TLl (mbTLla) has been shown to have biological function. ore to
neutralize the activity of TL1a it would be advantageous to have antibodies that bind
strongly to both membrane and e TLla. Antibodies that displayed functional
inhibition of TL1a were screened by flow cytometry on a human cell line transfected
stably with a membrane anchored TLla (produced as described in Example 1.11).
Antibodies C320, C321, C323 and 1B4 all bound to the TL1a transfected cell
line (Figure 6) with EC50s of 0.5 to 2nM, but not normal sfected cells.
To further characterize antibodies described herein, their function on primary
human cells was tested. PBMCs were isolated as described in Example 1.12. Using the
assay conditions described in Example 1.13 these cells were shown to e both
mbTLla (Figure 7A) and e TL1a (Figure 7B).
PBMCs were ated as described in Example 1.13 and assayed for cytokine
production in the presence of anti-TLla dies. Since no exogenous TLla was
added to the cell culture, the effects of anti-TLla antibodies were due to neutralization
of nous TLla. Antibodies, C320 and C323 demonstrated good inhibition of
endogenous TLla-induced cytokine production by PBMCs (Figure 8). This inhibition
was apparent on cytokines typically produced by Th1 cells (IFN-y Figure 8A) and Th2
cells (IL-13; Figure 8B). These data demonstrate that these antibodies are likely to be
capable of inhibiting TL1a produced from primary human cells, and that these
antibodies could be used as diagnostic reagents to detect TL1a on cells or in sera.
Example 7: Generating Improved Variants of C320
The C320 antibody was further optimized through alterations to the antibody’s
sequence with the aim of yielding a positive effect on the antibody’s biophysical
properties whilst having minimal impact on the potency of C320.
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For example, alterations that enhance the sion level of the antibody with
concomitantly increased production levels are desirable. Removal of a N-linked
glycosylation site in the VH through amino acid substitution to reduce product
heterogeneity may further enhance C320. Substitution of amino acid residues with the
potential to impact the stability of the antibody through oxidation or isomerization
during purification or e with amino acids that do not undergo such transitions
(Wang et (11., Journal of Pharmaceutical Sciences 96:1-26, 2006) may further improve
C320. Substitution of rare or rm-line C320 sequences which may potentially
bute to immunogenicity with those of lower ted immunogenicity could
r improve C320. Such changes are described in more detail as s.
Enhancing the expression of C320
A database of human antibody germline amino acid sequences was interrogated
by Basic Local Alignment Search Tool searches (BLAST: Altschul et al., J M01 Biol
215: 403-410, 1990) using the C320 VH and VL amino acid sequences. This identified
twenty of the most homologous human antibody germline sequences to those of the
C320 VH and C320 VL, respectively. Aligning the human germline sequences with
those of C320 enabled the identification of residues t in C320 but not common in
the majority of the germlines. The most common amino acid from the germline
sequences was substituted into the C320 amino acid sequence. Table 7 lists the amino
acid substitutions and the ant impact on the sion level of each antibody
from a transient transfection in HEK-293E cells.
Table 7: Effect of amino acid substitutions on expression and potency
Antibody Amino Acid % Expression I)???
Designation Substitution Level relative to
EC-SO (pM)
(chain) C320
C320 N/A 100 233
C320-2 A16S (Heavy) 156 159
C320-3 T41P (Heavy) 338 428
C320-4 N73D ) DNE N/A
C320-5 A76T (Light) 231 89
C320-6 L81Q (Light) 98 67
C320-135 T41P (Heavy) & 288 462
A76T (Light)
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Amino acid substitutions are relative to SEQ ID NO: 42 for heavy chain and
SEQ ID NO: 46 for light chain.
Two substitutions, present in C320-3 and C320-5 raised the expression level of
the antibody greater than two-fold and whilst minimally impacting the potency of the
antibody in a TF-l potency assay. A r antibody incorporating both substitutions,
C320-135, had largely equivalent potency and maintained the improved expression
level.
C320-4 contained a N73D (N72D according to the numbering system of Kabat)
substitution which aimed to improve expression while also attempted to remove an N-
linked glycosylation motif. However, the N73D substitution abolished antibody
expression, suggesting N73 is desirable for sion of the antibody.
To further improve C320 expression the CDRs of C320 were grafted onto other
frameworks of antibodies possessing a known crystal structure. This unusual approach
was adopted as antibodies of known crystal structure usually possess a matched VH:VL
pair. To select antibodies with suitable VH- and VL frameworks BLAST searches of a
database of crystal structures were performed to fy antibodies of r amino
acid sequence to C320. BLAST searches using the C320 VH were used to identify the
100 most homologous antibody sequences with known l structures. Similarly, the
100 most homologous antibody sequences to the C320 VL with known crystal
structures were identified. Crystal structures appearing in both heavy- and light chain
lists were deemed suitable acceptor frameworks for CDR ng. These were lTZG,
lRHH, 2DD8, 2JB5, 3FKU, 3GBM, 3IYW, 3LMJ, and 3P30. The CDRs of C320 were
then used to replace the CDR ces t in each of the above dy
sequences. An alignment of each of the sequence ning the C320 CDR regions is
given in Figure 1D (heavy chain) and Figure 1G (light chain). The antibody heavy and
light chains were then paired as follows and assessed for protein expression and TLla
binding and the results listed in Table 8.
Table 8: Results of CDR grafting on expression and TL1a g
Protein A Protein A
Antibody Heavy capture TLla binding
Desi_nation Chain (RU) (RU)
C320 C320 C320 779 2764 282
mock N/A N/A 25 376 N/D
C320-7 lTZG lTZG 187 912 N/D
C320-8 lRHH lRHH 437 1718 29
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Protein A Protein A
Antibody Heavy capture HPLC TLla binding
Desi_nati0n Chain (RU) (215 nm) (RU)
C320-9 2DD8 305
C320-10 2JB5 368
C320-1 l 3FKU N/D
C320-12 3GBM N/D
C320-13 3IYW 524
C320-14 3LMJ 171
C320-15 3P30 318
C320-16 1TZG 653
C320-17 1RHH 683
C320-18 2DD8 408
C320-19 2JB5 465
C320-20 3FKU 310
C320-21 3GBM N/D
C320-22 3IYW 665
C320-23 3LMJ 324
C320-24 3P30 311
C320-25 C320 1062 42
C320-26 C320 1012 81
C320-27 C320 9795 578
8 C320 2JB5 2176 623
C320-29 C320 3FKU 1549 3195 355
C320-30 C320 3GBM 1288 3356 455
C320-31 C320 3IYW 1061 2806 381
C320-32 C320 3LMJ 892 1888 331
C320-33 C320 3P30 1527 4473 521
Note: The sequences of heavy and light chains of these antibodies are listed in Figure
1D and 1G.
RU is response units - a measure of binding to the surface using SPR and ABC is area
under the curve.
When the CDRs of C320 were grafted onto different antibody frameworks a
large number of the ant antibodies expressed at a level above that of the C320
antibody. The antibody C320-l6, in which the heavy chain C320 CDRs were grafted
on the antibody 1TZG ork and was paired with the C320 light chain, expressed
3-fold better than C320. This ment also demonstrated that it is possible to
change the isotype of the antibody and retain protein expression and binding to TLla
using this approach, as some of the light chain antibody frameworks into which the
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C320 light chain CDRs were grafted were of the kappa isotype as opposed to the
lambda isotype present in C320.
To further e the expression of the antibody, amino acid substitutions
were introduced into the CDR3 region of the variable heavy chain of C320 and the
antibodies transfected into HEK-293E cells and screened for expression levels using
Protein A HPLC and Protein A capture using surface plasrnon nce (SPR). The
results are described in Table 9.
Table 9: Effect of HCDR3 substitutions on expression
Antibody Heavy Light Chain Protein AUC
Designation Chain Substitution A (Protein
Substitution (relative to capture A HPLC)
(relative to SEQ ID (RU) (280 nm)
SEQ ID NO: 46)
NO: 42)
C320-0 N/A N/A 6413 487
mock N/A N/A 198 N/D
C320-53 E99S A76T 6831 581
C320-54 E99H A76T 6594 444
C320-55 E99L A76T 6797 540
C320-56 E99D A76T 5823 343
C320-57 E99Y A76T 7789 670
8 E99P A76T 5679 335
C320-59 E99Q A76T 8534 1149
C320-60 E99K A76T 8293 839
C320-61 V100A A76T 8381 863
C320-62 V1005 A76T 8423 803
C320-63 V100H A76T 8828 751
C320-64 V100L A76T 8288 910
V100D A76T 8816 1003
C320-66 V100Y A76T 7750 570
C320-67 V100P A76T 7831 660
8 V100Q A76T 8170 715
C320-69 V100K A76T 8741 706
C320-70 P101A A76T 5022 234
C320-71 P1018 A76T 5083 268
C320-72 P101H A76T 5403 230
C320-73 P101L A76T 5518 283
C320-74 P101D A76T 5756 297
C320-75 P101Y A76T 5084 212
C320-76 P101Q A76T 5036 263
C320-77 P101K A76T 5702 309
C320-78 D102A A76T 8249 684
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Antibody Heavy Light Chain Protein AUC
Designation Chain Substitution A (Protein
Substitution ive to capture A HPLC)
(relative to SEQ ID (RU) (280 nm)
SEQ ID NO: 46)
NO: 42)
C320-79 D1028 A76T 8964 1102
C320-80 D102H A76T 8957 830
1 D102L A76T 7969 515
C320-82 D102Y A76T 8135 558
C320-83 D102P A76T 7765 462
C320-84 D102Q A76T 7826 635
C320-85 D102K A76T 8487 890
6 T103A A76T 10209 1882
C320-87 T1038 A76T 8236 567
C320-88 T103H A76T 4934 227
C320-89 T103L A76T 7580 822
C320-90 T103D A76T 8694 1106
C320-91 T103Y A76T 3838 130
C320-92 T103P A76T 4792 219
C320-93 T103Q A76T 4104 164
C320-94 T103K A76T 3592 149
A1048 A76T 4811 240
C320-96 A104H A76T 4882 251
C320-97 A104L A76T 4557 189
C320-98 A104D A76T 5371 279
C320-99 A104Y A76T 6305 410
C320-100 A104P A76T 5678 339
C320-101 A104Q A76T 6634 508
C320-102 A104K A76T 5826 438
C320-103 8105A A76T 8159 825
C320-104 8105H A76T 6664 426
C320-105 8105L A76T 6193 357
C320-106 8105D A76T 7752 992
C320-107 8105Y A76T 8209 1072
C320-108 8105P A76T 6132 483
C320-109 8105Q A76T 6767 465
C320-110 8105L A76T 6999 452
C320-111 E105K A76T 6919 500
C320-112 E1078 A76T 7713 631
C320-113 E107H A76T 6723 459
C320-114 E107L A76T 7739 839
C320-115 E107D A76T 8505 1034
C320-116 E107Y A76T 6465 375
C320-117 E107P A76T 6699 400
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Antibody Heavy Light Chain Protein AUC
ation Chain tution A (Protein
Substitution (relative to capture A HPLC)
ive to SEQ ID (RU) (280 nm)
SEQ ID NO: 46)
NO: 42)
18 E107Q A76T 8109 704
C320-119 E107K A76T 8776 952
Note: Substitutions in this table refer to those made into the C320 antibody
Several antibodies were generated that had significant sion levels above
that of C320 as determined by capture on a Protein A surface. Several of the high
expressing antibodies were re-transfected, purified by n A chromatography and
their potency measured in a TF-1 assay. The results are listed in Table 10.
Table 10. Effect of HCDR3 substitutions on TL1a inhibition
Heavy Potency
Chain Light Chain TF-l
Substitution Substitution EC-50
(relative to (relative to (pM)
Antibody SEQ ID SEQ ID
Designation NO: 42) NO: 46)
C320-0 N/A N/A 233
1 V100A A76T 272
C320-63 V100H A76T 1067
C320-65 V100D A76T 546
C320-68 V100Q A76T 535
C320-86 A76T 303
C320-87 A76T 356
C320-90 A76T 370
C320-103 A76T 455
C320-104 A76T 349
C320-106 A76T 1587
C320-112 A76T 242
C320-114 E107L A76T 514
C320-115 E107D A76T 321
C320-117 E107P A76T 251
C320-119 E107K A76T 4142
Note: Substitutions in this table refer to those made into the C320 antibody
The potency of the resulting antibodies ranged from reduced compared to C320,
such as C320-119, to levels equivalent to that of C320.
ation] jxd
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The light chain sequence of C320 was aligned against the germline sequence of
highest homology, IGLV1-40*01. Differences in amino acid ces in the CDR
regions were identified, as shown in Figure 9A. At a on in which the sequences
ed a back substitution of the amino acid from the germline sequence into C320
was performed. The antibodies were expressed in HEK-293 cells, purified and the
protein yield relative to C320 determined. A potency assay using TF-l cells was used
to characterize the inhibition profile of the antibodies. The results are displayed in
Table 11.
Table 11. Effect of germlining C320 on TFla inhibition
Heavy % Potency
Chain Light Chain Expression TF-l
Substitution tution Level EC-50
(relative to (relative to relative to (pM)
dy SEQ ID SEQ ID C320
Desi_nation NO: 42) NO: 46)
C320 N/A 100 233
C320-120 A23T 279 343
C320-121 D28N 239 1433
C320-122 L33Y 247 5480
C320-123 G34D 207 DNI
C320-124 Y53N 128 1613
C320-125 Y54S 259 13393
C320-126 P82A 187 539
C320-127 T41P G95S 140 541
C320-128 T41P T96S 134 328
Note: Substitutions in this table refer to those made into the C320 antibody
The antibody C320-120 trated a good level of expression and the highest
potency of all the antibodies tested in this experiment. Some of the substitutions, such
as those in C320-123 and C320-125 resulted in antibodies that expressed but no longer
ted or weakly inhibited TLla induced apoptosis on TF-l cells. This suggested
that the amino acids at the positions G34 (G32 according to the numbering system of
Kabat) and Y54 (Y52 according to the numbering system of Kabat) of the variable light
chain may be important in enabling the antibody to inhibit the activity of TLla.
Removal of putative oxidation and isomerization sites from C320
Amino acid analysis of the variable heavy and light chain sequences fied
several amino acids that may undergo oxidation or isomerization. Particular emphasis
was placed on amino acids present in the CDRs of the antibody. Changes to these
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amino acids may, over time, alter the binding profile of the antibody. In the le
heavy chain M51 (M51 ing to the numbering system of Kabat) was identified as
a potential oxidation site along with the ial aspartate ization site D102
(D98 according to the numbering system of Kabat). In the light chain, D94 (D92
according to the numbering system of Kabat) was identified as a potential
isomerization site. To reduce the potential impact of these predicted issues variants of
C320 were produced containing vative or semi-conservative amino acid
substitutions in these positions. These substitutions and their impact on the potency of
the resulting C320 variants are listed in Table 12.
Table 12. Effect of amino acid substitutions on expression and TLla tion
Antibody Amino Acid % Expression 1):};an
ation Substitution Level relative to
EC-50 (pM)
from C320 C-320
(chain)
C320 N/A 100 233
C320-129 D102E (Heavy) 201 433
C320-130 M51L (Heavy) 185 528
C320-131 D94E (Light) 103 10680
Note: Substitutions in this table refer to those made into the C320 antibody, with heavy
chain substitutions relative to SEQ ID NO: 42 and light chain substitutions relative to
SEQ ID NO: 46
The potential oxidation and ization site present in the heavy chain were
successfully substituted with conservative amino acids which resulted in improved
expression and retention of potency. The substitution of D94E in the light chain CDR
region resulted in an antibody that expressed at similar levels to C320, but had
significantly reduced potency, indicating that D94 of the light chain may be important
in mediating the onal activity of C320.
Removal of the N-glycosylation site from the C320 heavy chain
As an earlier attempt to remove the VH glycosylation site NTS by substitution to
DTS (N73D; N72D according to the numbering system of Kabat) was not successful,
further attempts to disrupt the N-linked glycosylation motif, NX(S/T) (where quP)
using a more comprehensive range of substitutions were made. Firstly, further residues
were tested in place of the asparagine at position 73. Secondly the substitution T74P
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(T73P according to the numbering system of Kabat) was tested, since e in this
position is known to prevent N-linked glycosylation. A range of amino acids were also
tested in place of S75 (S74 according to the numbering system of . The
constructs tested in ts to remove this glycosylation site and their impact on
antibody expression levels are listed in Table 13.
Table 13: Effect of amino acid substitutions on expression levels
Heavy Chain Light Chain
Substitution Substitution
relative to relative to AUC
Antibody SEQ ID NO: SEQ ID NO: (Protein
Designation 42 46 A HPLC)
C320-0 N/A N/A 162
C320-120 T41P A23T 710
mock N/A N/A N/D
C320- 138 N738 A23T 87
C320-139 N73K A23T 58
C320- 140 N73H A23T N/D
C320- 141 N73T A23T 66
C320- 142 N73Q A23T 70
C320- 143 N73G A23T N/D
C320- 144 N73P A23T N/D
C320- 145 N73L A23T 54
C320- 146 N73Y A23T N/D
C320- 147 T74P A23T 110
48 S75L A23T 115
C320- 149 S751 A23T 96
C320-150 S75A A23T 194
C320-151 S75Y A23T 88
C320-152 S75K A23T 115
C320-153 S75E A23T 110
C320-154 S75F A23T 78
C320-155 S75H A23T 118
Note: Substitutions in this table refer to those made into the C320 antibody
The majority of the C320 variants tested exhibited lower levels of expression
compared to C320, suggesting that substituting individual amino acids present in the
NTS motif, in C320, reduces the expression of the dy.
A result of earlier attempts to enhance the expression of C320 by grafting the
C320 CDRs onto different dy frameworks was the antibody designated C320-16,
which used the frameworks of 1TZG. This antibody expressed well and bound TLla
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(Table 7). The frameworks of 1TZG and C320-16 were devoid of the N-linked
glycosylation sequence motif, as the RNTSI (SEQ ID NO: 203) at positions 72 through
76 of SEQ ID NO: 42 (71 through 75 according to the numbering system of Kabat) of
C320 VH sequence is replaced by ADRST (SEQ ID NO: 204) in the corresponding VH
sequence of 1TZG.
Variant C320-135 sing expression enhancing substitutions VH T41P and
VL A73T was subjected to further heavy chain engineering. C320 VH sequence RNTSI
(SEQ ID NO: 203) at positions 71 through 75 was replaced by ADRST (SEQ ID NO:
204) from the corresponding VH sequence of 1TZG to produce antibody C320-163.
This antibody, now devoid of an N—linked glycosylation site, expressed when
transfected into HEK-293E cells and, when purified, was e of onal
inhibition of TLla mediated apoptosis of TF-l cells (Table 14).
Improved variants of C320
The amino acid substitutions identified in previous experiments as conferring
advantageous properties over C320 were subsequently combined and the resultant
antibodies expressed, purified and assayed for potency. The sequences of these are
listed in Figure 9B (variable heavy) and Figure 9C ble light). ative
potency and expression data of each antibody is listed in Table 14.
Table 14: Effect of amino acid tutions on expression and TLla inhibition
expression Potency
Antibody compared TF-l
Designation to C320 EC-50 (pM)
C320 100 233
C320-162 74 1053
C320-163 170 1160
C320-164 338
C320-165 240
C320-166 793
C320-167 239
C320-168 46
C320-169 477
C320-170 287
C320-171 DNI
72 269
C320-179 96
C320-183 439
ation] jxd
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* Note: DNI
= did not inhibit
Comparing antibodies C320-168 (containing a N-linked glycan motif) with
C320-163 and 70 (lacking a N-linked glycan motif) on an isoelectric focusing
(IEF) gel demonstrated removal of charge heterogeneity from the antibody profile on
removing the N-linked glycosylation site (Figure 9D). C320-168 has 5 to 6 distinct
charged isoforms compared to 1-2 isoforms visualized for C320-163 and 70.
This reduction in charge heterogeneity is an advantageous property providing improved
batch to batch consistency in large scale manufacturing processes (Wang et al., Journal
ofPharmaceutical Sciences 96:1-26, 2006).
Of the antibodies tested, two were more potent than the parental C320 dy
- C320-168 and C320-179 (Figure 9E). Both of these C320 variants include the light
chain variable region substitution G24S (G258 according to the numbering system of
Kabat) that was found to improve potency in TF-l assays in combination with the other
advantageous amino acids substitutions bed previously.
Removal of predicted MHC Class II binding peptides from antibodies
The amino acid sequence of C320-168 variable heavy and light chain regions
were analysed in silico using the software package EpibaseTM (LONZA). This software
ts the propensity of peptide sequences present in C320-168 to bind to MHC Class
II s. Such binding of peptides to MHC Class II alleles is an important step in a
host immune response against the administered antibody.
A peptide sequence in the heavy chain of C320-168, GLEWMGWLNPNSGNT
(SEQ ID NO: 205), was predicted to strongly bind to DRB1*0401. A peptide sequence
in the light chain of C320-168, YNRPSGVPD (SEQ ID NO: 206), was
predicted to strongly bind to DRB1*1101, DRB1*1104 and DRB 1* 1501.
The above listed peptide sequences and modified versions of these peptide
ces were synthesized and incubated with the corresponding MHC Class II
protein and an ELISA performed to determine if the e formed a complex with the
MHC Class II protein. The za peptide, PKYVKQNTLKLAT (SEQ ID NO:
207), was used as positive control in these assays to ted the formation of a
peptide:MHC Class II x. The binding of each peptide to the MHC Class II allele
is listed in Table 14.
Table 14. Binding of peptides to MHC Class II
Peptide MHC Class 11 Binding
Allele (% of positive
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control)
GLEWMGWLNPNSGNT (SEQ ID NO: 205) DRB1*0401 6
LLIYGYYNRPSGVPD (SEQ ID NO: 206) DRB1*1501 123
LLIEGYYNRPSGVPD (SEQ ID NO: 208) DRB 1* 1501 41
LLIGGYYNRPSGVPD (SEQ ID NO: 209) DRB1*1501 42
YNRPSGVPD (SEQ ID NO: 210) DRB1*1501 0
LLIKGYYNRPSGVPD (SEQ ID NO: 211) DRB1*1501 74
LLIYGYYNRPSGVPD (SEQ ID NO: 212) DRB1*1101 1
101 0
DRB1*1101 0
DRB1*1101 0
DRB1*1101 0
DRB1*1104 1
DRB1*1104 0
DRB1*1104 1
DRB1*1104 0
DRB1*1104 0
Peptides that may be immunologically significant or warrant further investigation as
good binders are considered to be those peptides with scores 2 15% of the positive
control. Therefore the peptide GLEWMGWLNPNSGNT (SEQ ID NO: 205) has a low
likelihood of being immunogenic and no attempt was made to modify this motif in
C320 related antibodies.
The peptide LLIYGYYNRPSGVPD (SEQ ID NO: 206) was shown to form a
complex with MHC Class II protein 501 (123% binding) but not DRB1*1101
or DRB1*1104. An attempt to reduce the formation of the peptide:MHC Class II
complex was made by modifying the tyrosine residue at the fourth position of the
e sponding to position 51 (position 49 according to the numbering system
of Kabat) in the C320-168 variable light chain sequence) to one of either glutamic acid,
glycine, proline, or lysine. The introduction of a glutamic acid or a e e at
this position d the complex ion by over 50% (Table 14). Introducing
proline at this position prevented complex formation. Antibodies C320-172 and C320-
179 incorporated substitution Y51E (Y49E according to the numbering system of
, in their VL region, whilst C320-183 incorporated the change Y51G (Y49G
according to the numbering system of Kabat) in the VL region. All three antibodies
expressed and functionally inhibited TL1a, as illustrated in Table 13. Expression of
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antibody C320-171 orating substitution Y51E (Y49P according to the numbering
system of Kabat) was detected, however, this antibody failed to functionally inhibit
TL1a, indicating that not all amino acids are tolerated at position 49 in the light chain
(Table 13).
Example 8 — Generation of High Potency DR3-Selective Antibodies
New antibodies capable of neutralizing TLla activity with high potency and
capable of ive inhibition of TLla-DR3-mediated activity are ted by
focusing on the C320 antibody epitope on TLla. For example, mutant variable regions
and/or individual substitutions showing improved expression and/or TL1a-
neutralization (e. g., as described in Example 7) are ed and re-tested to determine
if the improvement is additive.
In other approaches antibodies that bind to the epitope bound by C320 are
selected by any of a variety of techniques.
8.1 ion from an Antibody Librag Using the C320 Antibody
A phage display protocol is used where a first panning round is conducted using
an antigen density (i.e. biotinlyated TLla) of about 100 pmol and a TEA-based n
step as described previously. The second and third rounds use a reduced antigen density
(e.g., about 50 pmol). Phage are eluted by adding the C320 IgG at a 10-fold molar
excess and incubating the reactions at room temperature for 2, 5, 10 or 20 mins. The
IgG is expected to ically displace and elute phage expressing FAbs that bound to
the C320 epitope. Non-specific s and phage bound to other regions on the TLla
e are less likely to elute under these conditions.
The washing regimen comprises six washes with M-PBS for round 1 and 2. For
round 3 the washes are three washes with PBST and then three washes with PBS.
Eluted phage are used to infect TGl E. coli for phagemid rescue or generation of
colonies for screening as described for other phage display experiments.
8.2 Selection/Production of Antibodies Using Mutant TLla
Using mutated versions of TLla as panning reagents for phage display,
antibodies that recognize an epitope similar to that of C320 may be obtained. A phage
display library may be depleted of antibodies that recognize TLla with an amino acid
substitution of R32A and/or R85A. The library may then be panned against TLl a. The
resultant isolated dies will likely bind to the residues R32 and/or R85.
Example 9: Affinity Maturation of C320
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Antibody C320 is already a potent inhibitor of TLla activity. However, potency
may be enhanced using affinity maturation ches. ed y frequently
confers dosing and efficacy advantages.
Numerous methods for affinity maturation of antibodies are known in the art.
Many of these are based on the general strategy of generating panels or ies of
variant ns by mutagenesis followed by selection and/or screening for improved
affinity. Mutagenesis is often performed at the DNA level, for example by error prone
PCR (Thie et (11., Methods Mol. Biol. 525: 309-322, xv, 2009), by gene shuffling
(Kolkman and Stemmer, Nat. Biotechnol. 19: 423-428, 2001), by use of mutagenic
chemicals or irradiation, by use of ‘mutator’ strains with error prone ation
machinery (Greener et al., In Vitro Mutagenesis Protocols. (Humana press, NJ ),l996)
or by somatic hypermutation approaches that harness natural affinity maturation
machinery (Peled et (1]., Annu. Rev. Immzmol. 26: 1, 2008). Mutagenesis is also
performed at the RNA level, for example by use of QB replicase (Kopsidas et al.,
Immzmol. Lett. 107: 163-168, 2006). Library-based s allowing screening for
improved variant proteins are based on various display technologies such as phage,
yeast, ribosome, bacterial or mammalian cells, and are known in the art (Benhar, Expert
Opin. Biol. Ther. 7: 763-779, 2007). Affinity maturation is also achieved by more
directed/predictive methods for example by site-directed mutagenesis or gene synthesis
guided by findings from 3D protein modeling (see for example US6,180,370 or
USS,225,539).
Affinity maturation using ribosome y (Kopsidas et al., BMC Biotechnol.
7: 18, 2007) is performed using RNA ng the VL and VH domains of a C320-
related dy in scFv format. A library of variants of this RNA is generated using
QB replicase (typically 1 to 3 changes per le) and this library is displayed and
selected on ribosomes for binding to TLla. Phenotype-genotype linkage is achieved
e the RNA constructs used remain attached to the ribosome translating the
functional scFv protein. C320-related scFv-RNA-ribosome complexes are panned
against TLla and isolated. The RNA is converted into DNA and orated into a
bacterial expression system. Individual bacteria encoding a single scFv are then
isolated and induced to express the scFv. Using a competition ELISA, scFvs with a
higher affinity for TLla than a C320-related ScFv are identified. These scFvs are
converted into full length antibodies which are screened in the TF-l apoptosis assay as
described in Example 1.8 to determine ement in tion of TLla biological
activity over C320.
e 11: Efficacy of Anti-TLla Antibodies in Animal Models of Colitis
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Rodent reactive anti-TLla antibodies described herein were tested in
rodent models of acute colitis induced by intrarectal administration of di- or tri-
nitrobenzenesulfonic acid (D/TNBS) or oxazolone, and chronic colitis d by
administration of DSS in drinking water (as described in Wirtz et al., Nat. Protoc. 2:
541-546, 2007). DNBS and oxazolone induce localized tion and inflammation.
DSS administration s robust generalized inflammation of the intestinal tract
characterized by erosive lesions and inflammatory infiltrate. Symptoms of all these
models usually include diarrhoea, occult blood, weight loss and onally rectal
prolapse.
In a prophylactic model, antibody treatment was commenced at the start of
administration of the colitis-inducing compound. In a therapeutic model, antibody
treatment was commenced several days after commencement of induction. The effect
of the treatment on weight, stool consistency and occult blood, as well as microscopic
effects on epithelial integrity and degree of inflammatory infiltrate was determined.
Daily clinical g was performed based on stool consistency and presence of occult
blood giving a disease activity index (DAI) score.
dy C320—l68 showed comparable efficacy to a rd of care
nd when dosed prophylactically in DNBS- or oxazolone-induced s
(Figures lOA-lOC), and when dosed therapeutically in DSS-induced colitis (Figures
llA andl 1B).
Example 12: Efficacy of Anti-TLla Antibodies in Animal Models of Disease
Antibodies are additionally tested in a rodent model of multiple sclerosis
(Racke, Curr. Protoc. ci. Chapter 9, Unit 9 7, 2001). In this model either acute
or chronic central demyelination is induced by administration of spinal cord
homogenate or purified myelin peptides in adjuvant. This administration causes
autoimmune destruction of the myelin sheath around the spinal cord s g to
lower limb weakness which may develop to paralysis, and is characterized by
significant inflammatory infiltrate into the spinal cord. The acute form is asic
and animals recover spontaneously. The chronic form resembles relapsing-remitting
multiple sclerosis and consists of two or more episodes of hind limb
weakness/paralysis.
Antibody effects are determined both in terms of amelioration of symptoms such
as al or reduction of muscle weakness, and at the microscopic level by assessing
degree of spinal cord myelination and inflammatory infiltrate.
Antibodies are tested for therapeutic application, e.g., in the acute and chronic
forms of disease and for prophylactic application, e.g., by administration during
remission of the chronic form of disease.
Claims (45)
1. An isolated or recombinant TL1a-binding protein comprising an antigen binding domain of an antibody, wherein the TL1a-binding protein reduces the level of apoptosis of TF-1 cells cultured in the presence of human TL1a produced by human cells and cycloheximide with an EC50 about 0.75nM or less, and 10 wherein the EC50 is determined by a method comprising ting about
7.5x10 4 TF-1 cells with about 100ng human TL1a per mL of culture and about 10 µg/mL cycloheximide and the TL1a-binding protein at a tration of about 5µg/mL or less for about 4 to 5 hours. 15 2. The TL1a-binding protein of claim 1, wherein the EC50 is about 0.5nM or less.
3. The TL1a-binding protein of claim 1, wherein the EC50 is about 0.48nM or less.
4. The TL1a-binding protein of claim 1, wherein the EC50 is about 0.45nM or less.
5. The TL1a-binding protein of any of claims 1 to 4, which binds to TL1a on the surface of a cell with an EC50 of from about 0.75nM or less, or about 0.5nM or less, or about 0.48nM or less, or about 0.45nM or less, or about 0.1nM or less. 25
6. The TL1a-binding n of any one of claims 1 to 5, wherein the TL1abinding protein binds to an ellular domain of TL1a.
7. The TL1a-binding protein of claim 6, wherein the TL1a is human TL1a. 30
8. The TL1a-binding protein of claim 6, wherein the TL1a is mouse TL1a.
9. The TL1a-binding n of claim 6, wherein the TL1a is monkey TL1a.
10. The TL1a-binding protein of claim 6, wherein the TL1a is rabbit TL1a.
11. The TL1a-binding protein of claim 6, wherein the TL1a is rat TL1a.
12. The TL1a-binding protein of any one of claims 1 to 11, wherein the TL1abinding protein detectably binds to an m of TL1a consisting of amino acids 72- 40 251 of SEQ ID NO: 123.
13. The TL1a-binding protein of any one of claims 1 to 12, wherein the TL1abinding protein detectably binds to an isoform of TL1a consisting of amino acids 84- 251 of SEQ ID NO: 123. 10
14. The TL1a-binding protein of any one of claims 1 to 13, wherein the TL1abinding protein binds at least at amino acid residues arginine at position 32 and arginine at position 85 of a human TL1a which comprises an amino acid sequence as set forth in SEQ ID NO:202.
15 15. The TL1a-binding n of any one of claims 1 to 14, wherein the TL1abinding protein binds to an epitope within TL1a comprising one or more of the following amino acid residues in TL1a: (i) an arginine at a position corresponding to amino acid residue 32 of SEQ ID NO:202; 20 (ii) a threonine at a position corresponding to amino acid residue 168 of SEQ ID NO:202; and/or (iii) a glutamic acid at a position corresponding to amino acid residue 170 of SEQ ID NO: 202. 25
16. The TL1a-binding protein of any one of claims 1 to 15, wherein the nding protein binds to an epitope within TL1a comprising a residue corresponding to arginine at position 32 of SEQ ID NO: 202.
17. The TL1a-binding protein of any one of claims 1 to 16, wherein the TL1a- 30 binding protein binds to an epitope within TL1a comprising a e corresponding to ine at position 168 of SEQ ID NO: 202.
18. The TL1a-binding n of any one of claims 1 to 17, n the TL1abinding protein binds to an e within TL1a comprising a residue corresponding to 35 glutamic acid at position 170 of SEQ ID NO: 202.
19. The inding protein of any one of claims 1 to 18, wherein the TL1abinding n binds to an epitope within TL1a comprising residues corresponding to arginine at position 32 of SEQ ID NO: 202 and the arginine at position 85 of SEQ ID 40 NO: 202.
20. The inding protein of any one of claims 14 to 19, wherein the e is a conformational epitope.
21. An isolated or recombinant TNF-like ligand 1a (TL1a)-binding protein 10 comprising an antigen binding domain of an dy which binds specifically to TL1a and inhibits interaction of TL1a and Death Receptor 3 (DR3) and which does not inhibit interaction of TL1a and Decoy Receptor 3 (DcR3).
22. The TL1a-binding protein of claim 21, wherein the inding protein binds 15 a mutant form of e human TL1a comprising a sequence set forth in SEQ ID NO: 202 in which the arginine at position 32 has been substituted with alanine and/or the arginine at position 85 has been substituted with alanine at a level that is at least 75% lower than the level with which the protein binds to soluble human TL1a comprising a sequence set forth in SEQ ID NO: 202, 20 wherein the mutant form of TL1a is immobilized on a solid or semi-solid substrate at a concentration of about 1 µg/mL, and wherein the TL1a binding protein at a concentration of 10 µg/mL is then contacted to the immobilized mutant TL1a.
23. The TL1a-binding n of any one of claims 1 to 22, which does not 25 detectably reduce ction of TL1a and DcR3.
24. The TL1a-binding protein of any one of claims 1 to 23, wherein the TL1abinding protein comprises one or more of: (i) a heavy chain FR1 comprising an amino acid sequence set forth in SEQ 30 ID NO: 144; (ii) a heavy chain FR2 comprising an amino acid sequence set forth in SEQ ID NO: 145; (iii) a heavy chain FR3 comprising an amino acid sequence set forth in SEQ ID NO: 146; and 35 (iv) a heavy chain FR4 comprising an amino acid sequence set forth in SEQ ID NO: 147.
25. The TL1a-binding protein of any one of claims 1 to 24, wherein the TL1abinding protein is an IgG1, IgG2 or IgG4. 5
26. The TL1a-binding protein of any one of claims 1 to 25, wherein the TL1abinding protein comprises a human or non-human primate light chain immunoglobulin constant region which is a kappa light chain.
27. The TL1a-binding protein of claim 26, wherein the TL1a-binding protein 10 comprises a human kappa light chain constant region comprising a sequence set forth in SEQ ID NO: 135.
28. The TL1a-binding protein of any one of claims 1 to 27, wherein the n binding domain comprises at least a heavy chain variable region (V H) and a light chain 15 variable region (VL), n the VH and VL form an Fv.
29. The TL1a-binding protein of claim 28, wherein the VH and the VL are in a single polypeptide chain, and the TL1a-binding protein is: (i) a single chain Fv fragment (scFv); 20 (ii) a dimeric scFv Fv); (iii) (i) or (ii) linked to a Fc or a heavy chain constant domain (CH) 2 and/or CH3; or (iv) (i) or (ii) linked to a n that binds to an immune effector cell; or wherein the VL and VH are in separate polypeptide chains and the TL1a-binding protein 25 (i) a diabody; (ii) a triabody; (iii) a tetrabody; (iv) a Fab; (v) a 2; 30 (vi) a Fv; (vii) one of (i) to (vi) linked to a Fc or a heavy chain constant domain (CH) 2 and/or CH3; (viii) one of (i) to (vi) linked to a protein that binds to an immune or cell; or (ix) an antibody.
30. The TL1a-binding protein of claim 29, wherein the Fc region effector function is altered.
31. The TL1a-binding protein of any one of claims 1 to 30, which is chimeric, de- 40 immunized, humanized, synhumanized, human or primatized.
32. The TL1a-binding n of any one of claims 1 to 31 conjugated to a compound.
33. An isolated or recombinant nucleic acid encoding the TL1a-binding protein of 10 any one of claims 1 to 32.
34. An expression construct comprising the nucleic acid of claim 33 operably linked to a promoter. 15
35. An isolated cell sing the TL1a-binding protein of any one of claims 1 to
36. A composition comprising the TL1a-binding protein of any one of claims 1 to 32, or the c acid of claim 33, or the expression construct of claim 34, or a cell of 20 claim 35 and a suitable carrier.
37. Use of the TL1a-binding protein of any one of claims 1 to 32, or the nucleic acid of claim 33, or the expression construct of claim 34, or a cell of claim 35 in the manufacture of a medicament for the treatment or prevention of a symptom of a TL1a- 25 mediated condition.
38. The TL1a-binding protein of any one of claims 1 to 32, or the nucleic acid of claim 33, or the expression construct of claim 34, or a cell of claim 35 for use in the treatment or prevention of a symptom of a TL1a-mediated condition.
39. A method for detecting TL1a in a sample obtained previously from a subject, the method sing contacting a sample with the inding protein of any one of claims 1 to 32, such that an n-protein complex forms and detecting the complex, wherein detecting the complex is indicative of TL1a in the sample.
40. A method for detecting TL1a in a sample obtained previously from a subject, the method comprising detecting the TL1a-binding n of any one of claims 1 to 32 in the subject, wherein the protein is conjugated to a detectable label. 5
41. A method for diagnosing a TL1a-mediated condition in a subject, the method sing performing the method of claim 39 or 40, wherein ion of TL1a is indicative of the TL1a-mediated condition.
42. The method of claim 41, comprising determining the level of TL1a in the 10 sample, wherein an increased or decreased level of TL1a in the sample compared to a control sample is indicative of the TL1a-mediated condition.
43. The method of claim 41 or claim 42, or the use of claim 37 or claim 38, wherein the TL1a-mediated condition is an autoimmune disease.
44. The method of any one of claims 41, 42 or 43 or the use of any one of claims 37 or claim 38, wherein the TL1a-mediated condition is ulcerative colitis, Crohn’s e, irritable bowel syndrome, rheumatoid arthritis, polyarthritis, multiple sclerosis, uveitis, asthma or c obstructive pulmonary disease.
45. The TL1a-binding protein of any one of claims 1 to 32, or the c acid of claim 33, or the expression construct of claim 34, or the cell of claim 35, or the composition of claim 36, or the use of claim 37 or claim 38, or the method of any one of claims 39 to 44, as described herein with reference to the examples and/or figures.
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US61/541,590 | 2011-09-30 | ||
| AU2011904042 | 2011-09-30 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| NZ622092A NZ622092A (en) | 2016-12-23 |
| NZ622092B2 true NZ622092B2 (en) | 2017-03-24 |
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