NZ711762B2 - Method of producing an immunoligand/payload conjugate - Google Patents
Method of producing an immunoligand/payload conjugate Download PDFInfo
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- NZ711762B2 NZ711762B2 NZ711762A NZ71176214A NZ711762B2 NZ 711762 B2 NZ711762 B2 NZ 711762B2 NZ 711762 A NZ711762 A NZ 711762A NZ 71176214 A NZ71176214 A NZ 71176214A NZ 711762 B2 NZ711762 B2 NZ 711762B2
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- immunoligand
- antibody
- payload
- sortase
- conjugation
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/62—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid
- A61K47/65—Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
- A61K47/6801—Drug-antibody or immunoglobulin conjugates defined by the pharmacologically or therapeutically active agent
- A61K47/6803—Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
- A61K47/6835—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site
- A61K47/6851—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site the antibody targeting a determinant of a tumour cell
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
- A61K47/6889—Conjugates wherein the antibody being the modifying agent and wherein the linker, binder or spacer confers particular properties to the conjugates, e.g. peptidic enzyme-labile linkers or acid-labile linkers, providing for an acid-labile immuno conjugate wherein the drug may be released from its antibody conjugated part in an acidic, e.g. tumoural or environment
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/04—Antibacterial agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/107—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length by chemical modification of precursor peptides
- C07K1/1072—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length by chemical modification of precursor peptides by covalent attachment of residues or functional groups
- C07K1/1075—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length by chemical modification of precursor peptides by covalent attachment of residues or functional groups by covalent attachment of amino acids or peptide residues
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
- C07K16/40—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against enzymes
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P21/00—Preparation of peptides or proteins
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/50—Other enzymatic activities
- C12Q2521/537—Protease
Abstract
The present invention relates to a method of producing an immunoligand/payload conjugate which method encompasses conjugating a payload to an immunoligand by means of a sequence-specific transpeptidase, or a catalytic domain thereof (See Figure). The method allows the conjugation of payloads to immunoligands in a site-specific and/or sequence specific manner and allows preserving characteristic features of its components. noligands in a site-specific and/or sequence specific manner and allows preserving characteristic features of its components.
Description
Method ofproducing an irnmunoligand/payload ate
_____________________________________________________________________________________________________________
The present invention is related td-‘i‘fflethods ofproducing an irnmunoligand/payload
conjugate
Intr0duction
Currently, the predominant methods to label and/or to conjugate molecules to proteins,
especially, When small-molecule payloads. or labels are concerned, involve the chemical '
conjugation with specific linker molecules that ntly attach the payload to free lysine
and/or cysteine amino acids of the proteins.
HOWeVer, many proteins, like e. g. antibodies that are of particular interest for
nctargeting strategies, are fairly large proteins, that may contain several lysine and
ne residues. Because linker—mediated, chemical conjugation is a stochastic process,
linlcer~mediated chemical ligation ofpayloads leads to geneous mixtures of conjugated
proteins that may difier in their therapeutic y and/or diagnostic utility. Obviously,
mixtures of n~payload conjugates also represent a significant challenge in the
regulatory approval process for therapeutic conjuagtes, as batch—to-batch variation and/or
variations in the active pharmaceutical ingredient (API) are negatively viewed by regulatory
authorities due to potential safety concerns
In addition, if a defined ratio of payload to protein is desired, it is often necessary to purify
the conjugate with the desired conjugation stoichiometryi This is not only tedious, but can
significantly add to the cost—of~goods in the manufacturing process, as often only a on
of the linker~rnediated conjugated protein represents the d ratio of payload
conjugation. This is ularly true for therapeutically relevant antibody/ding conjugates
(ADCs), where depending on the toxin employed, 3 to ’4 toxin molecules appear to be
advantageous, but antibodies with no toxin coupled to up to 8 toxins per antibody coupled
are found in typical linlcer~mediated al conjugation reactions ski ct al.
(2014)).
Despite of the limitations described above, all antibody/drug ates currently in clinical
trials, or approved by the health authorities for the therapy of disease, have been generated
linlcer~mediated chemical conjugation of toxic small~molecule drugs to antibodies
(Lambert (2012) or Mullard (2013)).
It is widely acknowledged in the industry and by scientific experts in the field, that site
specific and iomettic conjugation of molecular payloads, including toxin or label
molecules to immunoligands would have significant advantages in comparison to chemical,
linker—mediated conjugation This is evidenced by attempts to target the chemical
ation to specific amino acids inthe protein structure (PanOWSki et a1. (2014)).
StfllClIUl‘C to delete
On one hand, this is ted by mutating certain positions in the protein
unwanted and/or to provide desired conjugation sites (i.e. lysine and/or cysteine residues) to
which the linlcer~ligation can be targeted (McDonagh et a1. (2006) or Iunutula et al. (2008)).
On the other hand, control of chemical conjugation to proteins is attempted by incorporation
of unnatural amino acids at certain positions, like selenocysteine, p—azidophenylalanine, or
phenylalanine (Hofer et al. (2009), Axup et a1. (2012), or Lemke (2011)).
However, all of these ches change the primary amino acid sequence of the n to
be conjugated, and may result in undesired functional properties. Fultheimore,
incorporation of unnatural amino acids, as described abOVe, is often low efficient, and does
sites to ns.
not allow for a quantitative incorporation of specific labeling
Summary of the inVenticn
of stochastic
Therefore, there is an urgent need in the industry to overcome the known issues.
conjugation methods in particular for the tion of therapeutically relevant
conjugates, including, but not limited to ADCs.
It is thus one object of the present invention to provide an nt method for conjugating
immunoligands and ds, e.g., drugs, toxins, cytolcines, markers, or the like, preferably
full—length monoclonal antibodies to small~molecu1ar Weight toxins, for the tion of
site— specifically conjugated antibody drug conjugates (ADCs).
It is another object of the t invention to create immunoligand/payload conjugates,
Which have better efficacy and/or can be ed with higher reproducibility
It is another object of the present invention to allow the conjugation of payloads to
immunoligands in a site specific and/or sequence specific .
It is another object of the present invention to create immunoligand/payload conjugates
Which preseI‘Ve the characteristic features of its components, e.g., target affinity, target
specificity, target sensitivity, solubility, pharmacological function and the like
These s achieved by the subject matter of the independent claims, While the
dependent claims as well as the specification disclose r preferred embodiments.
Definitions
As used herein, the term “immunoligand” is meant to define an , an agent or a
molecule that has affinity to a given target, e.g., areceptor, a cell surface n, a cytolcine
block or
or the like, Such immunoligand may optionally dampen agonist—mediated
interaction. Most however, the
responses, or inhibit receptor~agonist importantly,
ligand may seive as a shuttle to deliver apayload to a specific site, which is defined
by the target recognized by said immunoligand, Thus, an immunoligand targeting, for
instance, but not limited to areceptor, delivers its payload to a site which is characterized by
abundance of said receptor. Immunoligands include, but are not limited to, antibodies,
antibody fragments, dy~based binding proteins, antibody mimetics, receptors, e
and ligands ofreceptors,
decoy receptors, scaffold proteins with affinity for a giVen target
odies", also synonymously called "immunoglobulins" (lg), are generally comprising
four polypeptide chains, two heavy (H) chains and two light (L) chains, and are therefore
multimeric proteins, or an equivalent Ig homologue thereof (e.g., a camelid nanobody,
which comprises only a heavy chain, single domain antibodies (dAbs) which can be either
be deriVed from aheavy or light chain) ,' including full length functional mutants, ts, or
derivatives f (including, but not limited to, mmine, ic, humanized and fully
human antibodies, which retain the essential epitope binding features of an lg molecule,
including dual specific, bispecific, multispecific, and dual variable domain
immunoglobulins,‘ lmmunoglobulin molecules can be of any class (e.g., IgG, IgE, IgM, IgD,
IgA, and IgY), or ss (e.g., IgGl, IgG2, IgGB, IgG4, IgAl, and IgA2) and allotype.
that contains
An "antibody—based binding protein”, as used herein, may represent any protein
context of other
at least one antibody~derivad VH, VL, or CHimmunoglobulin domain in the
non~immunoglcbulin, or non—antibody derived components. Such antibody—based proteins
include, but are not limited to (i) Ila—fusion ns of binding ns, including receptors
or receptor ents with all or parts of the immunoglobulin CH domains, (ii) binding
proteins, in Which VH and or VL domains are coupled to alternative molecular scaffolds, or
(iii) molecules, in which innnunoglobulin VH, and/or VL, and/or CH domains are combined
and/or led in a fashion not nmmally found in naturally occuring antibodies or
antibody fragments.
An "antibody drug conjugate? (ADC), as used herein, relates to either an antibody, or an
antibody fragment, or and antibody~based binding protein, d to a small molecular
Weight active pharmaceutical ingredient (API), including, but not limited to a toxin
(including cg, but not limited to, tubulin inhibitors, actin binders, RNA polymerasa
inhibitors, DNA~interoalating and modifying/damaging drugs), a kinase inhibitor, or any
API that interferes with a particular cellular pathway that is essential for the survival of a
cell and/or essential for aparticular physiologic cellular pathvvay.
An "antibody derivatiVe or fragmen ”, as used herein, relates to a molecule comprising at
least one polypeptide chain derived from an antibody that is not full length, ing,
the le
not limited to (i) a Fab fiagment, which is a lent fragment ting of
l (CHI) domains;
light (VL), variable heavy (VH), constant light (CL) and constant heavy (ii)
tWo Fab fragments linked by a
a F(ab')2 fragment, which is abivalent fiagment comprising
de bridge at the hinge region; (iii) aheavy chain portion of a Fab (Fa) fragment, which
consists of the VH and CH1 domains; (iv) a variable fragment (FV) nt, which consists
of the VL and VH domains of a single arm of an antibody, (v) in antibody (dAb)
fragment, Which comprises a single variable domain; (vi) an isolated complementarity
wo 40317 summon/055173
determining region (CDR); (vii) a single chain FV Fragment ; (viii) a diabody, which is
ific dy in which VH and VL domains are expressed on a
a bivalent, single
polypeptide chain, but using a linker that is too short to allow for pairing betWeen the two
domains on the same chain, y forcing the domains to pair with the complementarity
domains of another chain and creating two antigen binding sites; and (ix) a linear antibody,
which comprises a pair of tandem FV segments (VH-CHLVHCHI) which, er with
complementarity light chain polypeptides, form a pair of antigen binding regions;
and (x)
other non-full length portions of immunoglobulin heavy and/or light chains, or mutants,
variants, or derivatives thereof, alone or in any combination.
The term ied antibody format”, as used herein, encompasses antibody~drug~~
ates, Polyallcylene oxide—modified scFv, Monobodies, Diabodies, Camelid
Antibodies, Domain dies, bi~ or trispecific antibodies, IgA, or We IgG structures
joined by a I chain and a secretory component, shark antibodies, new world primate
ork + non—new world primate CDR, IgG4 antibodies with hinge region removed, IgG
with two additional binding sites engineered into the CH3 domains, antibodies with altered
Fc region to enhance affinity for Fc gamma receptors, dimerised constructs comprising
CH3+VL+VH, and the like.
The term ”antibody mimetic", as used herein, refers to proteins not belonging to the
immnnoglobulin family, and even non~proteins such as aptamers, or synthetic polymers.
Some types have an antibody—like beta~sheet structure. Potential advantages of "antibody
es” better tissue
or ”alternative scaffolds" over antibodies are solubility, higher
penetration, higher stability towards heat and enzymes, and comparatively low tion
costs.
Some antibody mimetics can be provided in large libraries, which offer specific binding
candidates against every conceivable target. Just like with antibodies, target specific
antibody mimetics can be developed by use of High Throughput Screening (HTS)
logies as well as with established display technologies, just like phage display,
ial display, yeast or mammalian display. Currently developed antibody mimetlcs
encompass, for example, anlcyrin repeat proteins (called DARPins), C~type lectins, A—
domain proteins of S. aureus, transfenins, lipocalins, 10th type HI domains of fibronectin,
Kunitz domain protease inhibitors, ubiquitin derived binders (called affilins), gamma
crystallin derived binders, ne knots or lmottins, thioredcxin A scaffold based binders,
WO 40317
c acid aptamers, artificial antibodies produced by molecular imprinting of polymers,
peptide libraries from bacterial genomes, SH—B domains, stradobodies, ”A s" of
membrane receptors stabilised by disulfide bonds and Ca2+, CTLA4~based compounds, Fyn
8H3, and aptamers (oligonucleic acid or peptide molecules that bind to a specific target
molecules)
In case the ligand is not a protein or a peptide, e.g., if its an aptamer, it should
preferably be provided with a peptide tag in order to provide a suitable substrate for the
enzymatic conjugation disclosed further herein.
"Con'u ation“, molecule to another
J g as used herein, relates to the covalent association of a
molecule by formation of a covalent bond.
An ”immunotoxin", to a protein or
as used herein, relates to an immunoligand conjugated
ptide representing a toxin, ing, but not limited to bacterial toxins, e. g. diphteria—
toxin A, Pseudornonas exotoxin, botulinum toxin, or e.g. naceous Vencms from
invertebrates (e.g. but not limited spiders, scorpions, molluscs, jellyfish), or yetrebrates
(e.g., but not limited to snakes), or functional fragments thereof,
The term “low molecular~Weight payload" as used herein, represents a payload with a
molecular Weight not exceeding 2'500 Dalton.
The term "payload”, as used herein, ents any naturally occuring or synthetically
generated molecule, including small~molecular weight molecules or chemical es that
or biological entities that need to be
can chemically be synthesized, and larger molecules
ed by fermentation of host cells and that confer a novel functionality to an
ligand specific for binding to targets or ns.
The term ”small molecular Weight toxin”, as used herein, means a cytotoxic compound of
small molecular Weight not eXceeding a molecular Weight of 2‘500 Dalton that is cytotoxic
' to ian cells.
A "transpeptidase”, or a
as used herein, is an enzyme or a catalytic domain of an enzyme
protein that is able to catalyze the breakage of peptide bonds and uently either
directly, or by Way of several reaction intennediates, the formation of novel peptide bonds,
such that the energy of the first peptide bond is preserved during the reaction and transfered
to a new peptide bond, Preferably, said iranspeptidases preferably t the C—terminus of
one e or n with the N~terminus of another peptide or protein. Due to the
formation of a new e bond, these enzymes or functional domains are also refered to as
in ligases", ”peptide ligases“, or med "protein or peptide staplers". Such protein
ligases comprise, but are not limited to e enzymes, inteins and split~inteins.
As used herein, the term nce—specific transpepeptidase" is meant to define a
transpeptidase which needs at least one substrate peptide or protein with a given peptide
recognistion sequence (N—terminally and/or inally) to connect said
sequence as
substrate peptide or protein to another peptide or protein, or a small—molecular Weight
compound containing apeptide or n component
As uSed herein, the term ”site~specific transpepeptidase” is meant to define a transpeptidase
Which has a specific site in at least one substrate peptide or n which it uses to
conjugate to another peptide or protein, or a small~mclecu1ar weight compound containing a
peptide or n component.
Background and general description of the invention
The invention discloses methods that utilize site~specific transpeptidases, e.g., sortase
enzymes and split~inteins, to site~specifically and selectively conjugate payloads, preferably
small lar weight toxins to immunoligands, preferably antibodies, for the generation
of immunoligand payloads, preferably antibody drug conjugates (ADCs). The red
payloads are small molecular weight toxins modified with short, preferably
less than 13'
(thirteen) amino acid long synthetic amino acid sequence, which renders them as substrates
for seitase enzymes or split intein mediated coValent conjugation either at the N~ or C~
terminus of the immunoligands (Figures 1 & 3). This conjugation is achieved in a Site—
specific manner and with defined stoichiomeily, which is a distinguiShing feature to
conventional chemical ation of payloads to immunoligands, where the conjugation
a stochastic process, as disclosed further above.
The invention finther discloses site specific transpeptidase, e.g. sortase or split~intein
ed conjugation of multimeric immunoligands, preferably antibodies specifically With
two different toxin molecules or other labels using different modifications of the subunits
' 7
the multimeric protein, modified
e. g. antibody heavy and light chains, and different payloads
with different, short amino acid stretches specific for ent transpeptidases, in order to
conjugate at least two different functional payloads to the multimeric immunOIigand (Fig.
The invention further discloses methods to add y purification and/or detection tags to
the N or C—termini of the immunoligands, which undergo enzyme—mediated
transpeptidation. such that the removal ofthe affinity purification and/or detection tag can be
utilized to select for immunologands with complete (100%) conjugation of the payload to
the modified g protein, by means of affinity resins that retain immunoligands that,
have not been completely conjugated, and therefore still retain the additional affinity
purification and/or detection tag (Fig. 4).
The invention further discloses immunoligands in which a catalytic transpeptidase domain is
directly fused to the N— or C—terminus of the protein to be conjugated, such that the
transpeptidation activity is integral part of immunoligand to be conjugated, and no onal
soluble sortase enzyme needs to be provided in the course of the transpeptidasemediated
ation reaction (Fig. 5).
All of these embodiments mentioned above allow the pecific and stoichicmetrically
controlled conjugation of any payload, including small molecule toxins (chemical es),
toxic proteins, or fluorescent labels, preferably small lar weight toxins to
immuncligands, including preferably antibodies, which is superior to standard al
conjugation oads to proteins by chemical linker chemistry methods, which cannot be
controlled for conjugation ratio and site. Therefore, for the generation of antibody drug
conjugates (ADCs) conjugation of toxic payloads by transpeptidaSes, preferably scrtase
enzymes and split inteins to antibodies will lead to more homogeneous products with ,
expected improved therapeutic properties for cancer therapy (Fig. 12).
The enzymatic conjugation of ds to immuncligands by sortase enzymes and split~
intein allch site—specific and stoichiomeuic payload conjugation to proteins and
ligands, chering f~gccds and providing homogeneous irnmuncligand—
payload ates, especially as the selectivity of the transpeptidases allows the
conjugation of payloads to immuncligands in crude cell culture supernatant, and does not
PCT/.EI’2014/055173
require purified components as in traditional linker—mediated chemical ation.
Therefore, the of sequence—specific transpeptidases for ation of payloads to
immunoligands could significantly IOWer the cost of goods in immunoligand—payload, and
particularly ADC manufacturing.
The first type of transpeptidase disclosed herein, the sortase enzymes, has been identified in
a variety of gram-positive bacteria, like Staphylococcus, Streptococcus and Pneumococcus
species, and catalyse the coupling of nce s to cell wall proteoglyoans, in order to
change the e signature of the bacteria for evading an efficient immune response by
infected host (Mazmanian et a1. (1999)). Sortase A enzyme of the gram~positive bacterium
Staphylococcus aureus has been characterized first (Ton~That et a1. (1999)) and has
subsequently been characterized r as a tool for many protein modifications (Tsulciji
(2009)). The attraction of sortase enzymes is that the two molecules to be ated only
require to be modified or expressed on one hand with a short 5 amino~acid long peptide tag
(sortase tag, LPXTG in case of Staphylococcus (litmus sortase A, X being any of the 20
naturally occuiing aminoacids), and a short, preferably 3 to 5 amino acid long glycine
stretch (Antes et al, (200921)) (Fig. l), which can easily be added to each of the molecules to
achieye either N—terminal or C~terrninal ation of proteins. This allOWS to utilize the
for the coupling or conjugation of two proteins, but also for the
system on one hand
conjugation of r les to proteins.
The second type of transpeptidase resulting in peptide—bond cleavage and formation, is
represented by the so~called inteins, which have originally been disaovered as protein
s, that can remOVe (splice) themselves out ofprecursor proteins by cleavage ofpeptide
bonds and formation of new peptide~bonds OCu et a1. (1993)) (Fig. 2a). Inteins can also
occur separated into N—intein and C—intein s (so~called split~inteins) and attached to
independent proteins that can subsequently catalyze the /raws~splicing of the extein domains
(Fig. 2b). Split—inteins have been utilized for the nt coupling of N—extein and C~extein
moieties, and also the ation and/or oircularization of proteins. (Elleuche (2010)).
However, in order to utilize split~inteins also for the conjugation of small molecule
payloads, it is necessary to utilize split s that function if either the N~intein or the C-
intein domain can be redused to few amino acids, that can easily be added to molecules of
any size by chemical synthesis, similar to the short at preferably 3 glycine stretch required
the artificial Ssp GyrB 811
for sortase—mediated transpeptidation. With the development of
split~intein, in which the Caintein domain only ses six amino acids (Sun et al. (2004)),
this condition has been met and this split—intein has been utilized for the C~terminal labeling
of proteins with biotin ann et al. (2009)) (Fig. 3a). Likewise, the pment of a
short 11 amino acid long N—intein from Ssp DnaX split~intein allows the N—terminal
conjugation of proteins With any molecule, if such 11 amino acid long stretch is added by
al synthesis to apayload of choice (Fig. 3b).
Therefore, 3 to 5 glycine one aspect of the invention is either to add a short, preferably
‘ acid stretch
acid glycine stretch, or a short 12 amino-acid SW amino
acid C~int domain
(X any naturally occuring or artificial amino acids), containing a 6 amino
Which is
of Ssp GyrB or a 11 aminc~acid N~int domain of Ssp DnaX to apayload—molecule,
sufficient to allow the respective trasnpeptidase to conjugate the modified payload to
proteins and immunoligands, preferably antibodies that, respectively, contain a sortase
enzyme recognition ’motif, e,g, LPXTG in case of utilization of Staphylococcus aureus
Soitase A, or a 150aa N~mt domain in case of utilization of Ssp GyrB split intein, or a 139
of Ssp DnaX split intein (see Figs 1 82; 3).
aa C-int domain in case of utilization
acids, like e. g. 3 or 5 glycine residues to a small The addition of short stretches of amino
molecular Weight toxins as required for sortaSe mediated conjugation, or 12 amino acids as
required for split—intein mediated conjugation, has been found to add to the Water~solubility
of certain hobic toxin molecules (data not shown), such that the amino acid—toxin
adduct can be dissolved in the physiologic buffer, enSuring optimal sortase or split~intein
conjugation. This prevents stress on the strutural integrity of large n molecules,
and non»
particularly antibodies that can easily be denatured by exposure to c solvents
associated with traditional linker chemistry and conjugation. In
physiologic pH often
antibodies
addition, conjugation of hydrophobic toxin molecules to large proteins, ular
can induce certain levels of protein aggregation. Also this may be improved by using
eptidases, ularly e enzymes, because further hydrophilio amino acids
for aggregation of
remain in the enzymatically generated conjugate, ng the propensity
large protein, or antibody drug conjugates.
Sortase enzymes have been widely described in the prior art for protein~protein
or protein~
peptide ligations (Mao et al, (2004), Parthasarathy et a1. (2007) or WO20ll/133704A2),
et al.
even including circularization of proteins (Antes (200%)). The applications of sortase
protein or peptide ligation also included protein or peptide ligation using antibody
fragments, like Fab» and ScFV~fragments with protein~ or peptide labels (Mohlmann
et al.
(2011), Madej et al. (2012), or US2010/0055761A1 and WO20l2/l42659Al), Eyen tWO
prior art documents Were published, in which full—length antibodies have been e~
ligated to ns (Levary et a1. (2011), to the
e. g. EGFP, albumin, gelonin were ated
light chain of an antibody), or in which full—length antibodies have been e~ligated to
short peptides (Swee et a1. (2013)), HoweVer, no prior art document could be identified
like
demonstrating the sortase-mediated conjugation of small~molecular weight toxins, e. g.
auristatins or maytansins and the like, to full~length antibodies or antibody fragments. In
particular no prior art documents could be identified, in which generation of ADCs with
small molecular weight toxins has been been disclosed resulting in ADCs with small
molecular Weight toxins homogeneously conjugated to either IgH or IgL chains to~
herein.
antibody ratio 2), or to IgH and IgL chains (drug to dy ratio 4), as disclosed
While the prior art also discloses the modification of non~protein substrates With glycine
residues such that they could be used for e modification of simple, single-subunit
proteins or peptides (Tsultiji (2009), or W0200’7/108013A3, respectively), the more
molecular
challenging homogeneous conjugation of non~protein substrates, ably small
described before,
Weight toxins, to multimeric proteins, preferrably antibodies, has not been
been in the prior
e the fact that sortase enzyme mediated protein or peptide ligation has
art for many years.
Moreover, the conjugation of multimeric proteins, particularly full—length monoclonal
antibodies with two different payloads, preferrably two different small lar Weight
the fact that
toxins as disclosed herein, has not been described in the prior art before, despite
in the prior al't for many years
sortaSe enzyme mediated protein or e ligation has been
ski et a1. (2014)),
It is known ficm the prior art that sortase enzymes may accept substrates that contain a
minimum of 3 e amino acids (Parthasarathy et al. (2007), therefore the ion may
include payloads that contain at least three (3) glycine amino acid residues added to the
payload molecule of interest, although even one or two glycine residues may be sufficient,
small molecular Weight
and should be comprised by the method disclosed herein. In case of
payloads the addition of few glycine amino acid residues .can be achieved by conventional
PCT/EPZOl4/055173
synthetic peptide chemistry, as described . In case of proteins glycine residues can“ be
added either by adding codons for a number of glycine residues, preferably at least three
glycine residues, in~frame to the open reading frame of the protein, or by conVentional
synthetic peptide chemistry such that the recombinant protein contains at least three N-
terminal glycine amino acid residues.
It is known from the ture that different e enzymes, e.g. Scrtase B from
Staphylococcus aureus, or Sortases from other ositive bacteria ize different
pentapeptide motifs, which differ from the LPXTG sortase A recognition motif (X = any
amino acid) from Staphylococcus aureus (Spirig et a1. ). Therefore, the invention shall
also include the concept of adding other sortase recognition motifs to proteins and
immunoligands, including preferably antibodies, that differ from the Staphylococcus oureus
sortase A ition motif LPXTG, in order to prepare them for sortase conjugation with
different e sortase enzyme of different gram—positive bacterial species. Therefore,
proteins and immunoligands, preferably antibodies, can also be expressed with a different
sortase recognition motif, a NPQTN pentapeptide motif specific for sortase B from e.g.
Staphylococcus cureus Which can then be conjugated to glycine modified payloads.
In an another aspect of the inVention, multimeric immunoligands, preferably but not limited
to antibodies, which are composcd of immunoglobulin heavy and light chains, allow the
utilization of said different e recognition ces added to the different ptides
of such multimeric proteins (in case of antibodies adding different e ition
in order to allow conjugation of different
sequences to the antibody heavy and light chains),
payloads to said different polypeptides by performing sequential conjugations with Glyn~
tagged payloads (11 >2) in the presence of the tiVe sortase enzyme (Fig. 6b). For this,
modifications at heavy and light
an antibody needs to be expressed with different C—terminal
‘ chains comprising difierent sortase recognition motifs for different Sortase enzymes. Such an
antibody can then sequentially be conjugated to two different payloads containing a glycine,
modification as described further above.
This format may have the advantage that ADCs specifically be loaded with two different
toxins, preferably interfering with a ent cellular pathway will be more potent in cancer
cell killing, because it is more difficult for a targeted cancer cell to evade the attack of two
toxins comprised in the ADCs.
It is clear to aperson d in the art, that a sortase pentapeptide recognition motif, like the
Staphylococcus aureus sortase A LPX-TG motif, can be added selectively to dual
polypeptides of multimeric immunoligands, in order to provide desired conjugation sites.
For instance, in the case of antibodies, this allows the generation of modified antibodies,
either only containing sortase recognition motifs added to the heavy chains (resulting in two
payloads per antibody conjugation), or only containing sortase recognition motifs added to
the light chains (resulting in two payloads per antibody conjugation), or containing sortase
recognition motifs added to the heavy and the light chains (resulting infour payloads per
antibody conjugation). These designed variations will allow specific conjugation ofpayloads
to antibodies by sortase enzymes either to the heavy chains alone (generating ADCs with
drug to antibody ratio of 2, i6. DARZ), or to the light chains alone (generating ADCs with
drug to antibody ratio of 2, i.e. DARZ), or simultaneously to the heavy and the light chains
(generating ADCs with drug to antibody ratio of 4, to. DAR4). This way, the conjugation
sites and, stoichiometries for antibodies can be varied in a controlled fashion, either
generating two payload conjugaticns per antibody heavy or light , or generating four
payload conjugations per antibody by addition of the payload to the heavy and the light
chains.
r to the above-described variations in conjugation sites and stoichiometries using
different sortase recognition motifs and sortase enzymes in multimeric proteins or
immunoligands, it is to
a further aspect of the ion to conjugate different payloads
different tide chains of multimeric proteins combining sortase—mediated and split—
intein mediated conjugation. This concept allows the simultaneous conjugation of different
payloads to ent ptide chains of multimen'c proteins and immunoconjugates in
are being employed (Fig,
one step, because ent transpeptidases and substrates 6a).
It is to be understood that the abovamentioned conjugation of two different payloads a
eric protein, ably an antibody, which is composed of each two disulphide
linked heavy and lights chains, can either be accomplished by combining sortase enzyme
mediated conjugation with split intein mediated conjugation, as depicted, in Fig, 6a, but that
it is also possible to conjugate two different payloads to a multimeric n, preferably an
antibody, by ing two different e enzymes, recognizing different sortase peptide
motifs, for instance sortase A and sortase B from Staphylococcus omens, as mentioned
wo 2014/140317
further above (Fig. 6b). However, this may also include sortase enzymes of other Sortase
classes (e.g. seitases C, D, E, F), or sortase enzymes from other ial species, differing
in their sortase motif specificity.
Sortase—mediated conjugation of payloads to proteins and immunoligands can be achieVed
either by providing e recognition motif tagged proteins and at least tri~g1ycine tagged
thereof as
payloads and adding enzymatically active sortase enzyme or a functional fragment
a Soluble enzmye. In another aspect of the invention the enzymatically active domain of
C~tenninus of the
‘sortase enzyme can also be provided as a domain fused to either the N— or
protein. In this variation, is is advantageous, but not ory, to add the sortase enzymatic
domain either N~terminal to an N~terminal sortase recognition motif, or C~terminal to a C»
reaction with a
terminal sortase recognition motif. Both ilities ensm‘e that the after the
glycine~tagged payload, that the enzymatic sortase domain is remQVed from the protein in
the course of the on (Fig. 5).
is similar in
This variation of applying e~mediated conjugation of ds to ns
Where the enzymatically actiVe N—
t to split~intein mediated conjugation of payloads,
in order to define
intein domains of split inteins are tethered to the protein to be conjugated,
the conjugation site in the n,
Similar to the large number of different sortase transpeptidases with different substrate
specificity that have been identified in the literature (Spirig et a1. (2011)), there is also a
large and growing number of split~inteins known from different species and proteins with
that can be retrieved
ent in and C~intein sequences required for transpeptidation
from the so—called InBase database (Perler (2002). ore, while the examples
of Split~
diSclose the prefered
intein mediated conjugation of immunoligands with payloads Ssp
GyrB Sll split intein (Vollanann et al. (2009)), because the C~intein domain can be reduced
mediated conjugation of ds to
to a short, linear 6~mer amino acid stretch, split~intein
proteins and immunoligands can also be achieved with other split inteins from the InBase
database, are short enough
as long as the N~intein or C~intein domains (preferably r
than and addition to any payload molecule
13 amino acids) to easily allow peptide synthesis
of choice. However, it is clear to a person skilled in the art that in the case of protein
payloads,‘ C-intein domains of any size may be fused to the protein payload by genetic
mechanistic advantage
fusion to the ORF of the protein payload of interest, and there is no
of using split~inteins with small (< 13 amino acids) N—intein or C~intein domains.
However, if synthetic small~molecule payloads are to be conjugated to proteins and
immunoligands, then a small N~int or C~int domain of less than 13 amino acids as disclosed
herin are advantageous, as in the case of the prefered C—int of the Ssp GyrB Sll split intein,
of the N—int of Ssp DnaX, because such a short peptide can synthetically be added to any
synthetic small le weight d by standard synthetic chemistry.
Sortase~mediated and split—intein mediated conjugation of payloads can be performed at
either the N~ or the ini of proteins and immunoligands. This is only ent on
how the sortaSe~mctif/glycine stretch and N—intein/C—intein domains are positioned at
protein and payload (Fig. 1).
In the case of antibodies, Which are the prefeired immunoligands, it is preferred to conjugate
the ds to the C~termini of the antibodies, because this positions the payloads most
distally to the antigen~binding sites of the antibody. However, this preference shall not be
interpreted by way of limitation, and it may be advantageous to conjugate ds to the N—
terminus of other immunoligand molecules, like e.g. antibody mimetics, in which the
functional binding domains are not located at the N—terminus of the le.
Another aspect of the ion is to improve the efficiency of soitase and split—intein
to ns and immunoligands by adding affinity purification or
ation of payloads
detection tags, like e. g., but not d to small peptide tags (e. g. histidine tags, tag,
MYC~tag or HA-tag) or larger n affinity purification tags (eg. maltose~binding protein
(h/IBP) tag, Glutathione~S~transerase (GST) tag, or Chitin—binding tag) distal to the sortase
recognition motif or the split~intein domain fused to the protein or immunoligand of interest.
With this aspect of the invention the affinity puiification tag will be d from the
immunoligand to be conjugated as part of the transpeptidation reaction. This can be
exploited to enrich fully payload conjugated immunoligands, as unreacted proteins and
imrmmoligands, that still contain the affinity purification tag, can be remOVed by binding to
and immunoligands
a suitable y resin, While completely payload conjugated proteins
will no longer contain the affinity pun‘fication tag, and can thus be specifically separated
from the unreacted immunoligand substrates. This aspect of the invontion is particularly
powerful in the context of multimeric proteins and immunoligands, like the preferred
antibodies, in which seVeral payloads need to be conjugated. The use of affinity purification
site ensures that one can
tags located distal to the sortase or intein transpeptidase conjugation
is still present due
remove proteins and ligands in which the affinity ation tag
to incomplete payload conjugation (Fig. 5).
in the process
In compaIiSOn to chemical conjugation, this provides a cant advantage
to obtain homogeneous immunoligand/payload conjugates, and preferably ADCs in which
small molecular weight toxins are site specifically conjugated to the Caterrnini of antibody
heavy and/or light chains.
Generally, the disclosed method es a novel and efficient method to pecifically
stoichiomeirically conjugate payloads, preferably small molecular weight toxins to
immunoligands, preferably antibodies, by which defined immunoligand/payload conjugates,
preferably ADCs are generated, that are useful for the therapy of diseaSes, preferably of ‘
. The method may also be utilized for the generation of immunoligand/payload
conjugates uSeful for the diagnosis of diseases, preferably oncology diseases The nOVel
utilization of
method allows generation covalent irnmunoligand/payload conjugates by
peptide—bond breaking and forming enzymes (transpeptidases), including sortase s
and split~inteins, or catalytically active fragments thereof. Said enzymes can catalyze the
covalent and site~specific conjugation of payloads containing short amino acid stretches
(preferably shorter than 13 amino acids) either to the N— or C~termini of immunoligands
and to form peptide
Which are ly modified allowing sortaSe and split»inteins to break
bonds in the coursc of the reaction. Immunoligands are ably antibodies, for the site
specific conjugation of small molecular weight toxins, in order to generate antibody drug
ratios.
conjugates (ADCS) with defined antibody payload, or drug to antibody
Embodiments of the invention
conjugate is
, According to the invention, a method of producing an immunoligand/payload
disclosed, which method encompasses conjugating apayload to an immunoligand by means
of a sequence c transpeptidase, or a tic domain thereof.
the immunoligand
According to apreferred embodiment of the invention, the payload and/or
either
a) consists, entirely, of aprotein or peptide
b) comprises at least one protein or peptide domain, or
0) comprises at least one peptide chain
and, r, the n or peptide or domain comprises, ably, an amino acid sequence
that can be ed by the sequence—specific transpeptidase, or a catalytic domain thereof.
This means, for example, that, in case the payload and/or the immunoligand is aprotein, it
means that said protein comprises, at its N or inus, an amino acid sequence which
can be detected by the sequence~specific eptidase. If such amino acid sequence is
lacking to the naive protein, it can be fused to the N~ or C-terminus of said protein by
recombinant methods known inthe art.
In case the payload and/or the immunoligand is not a protein, such amino acid sequence
which can be ed by the sequence— specific transpeptidase, is to be conjugated to the
former by conVentional chemical crosslinking methods known inthe art.
Additional functionalities may be incorprated between the recognition sequence for a
specific transpeptidase and the payload. This can be realized by chemical ures either
being categorized by being cleavable (erg. containing hydrazone, or disulfide chemistry, or
specific peptide sequences for intracellular proteases) or being non~cleavable (e.g.
containing thioether chemistry) following internalization into cells.
Chemical structures containing hydrazone chemistry can selectiVely be cleaved within the
intracellular compartment of lysosomes (IOWer pH compared to the systemic blood
circulation).
Peptide linkers have the potential to be selectively cleaved by lysosomal proteases (cg.
cathepsin~B) and have demonstrated increased serum stability and improved anti-tumor
effects compared to hydrazone linkers. Valine—citruline (Val~Cit) pairs are the most
ly used peptide linkers and are y suited to work With the auristatin family of
drugs such as monomethyl amistatin E (WAR).
.Non—cleavable s have long been overlooked as chers were convinced the
cleaving of the linker was the most reasonable way to free the drug. However, conjugates
internalized and once internalized, the
can, upon binding to a membrane receptor, get rapidly
immunoligand can be degraded to the point where the payload, e. g,, the drug is exposed As
one prominent example, thicether linkers, use the SMCC (N ~saiccinimidyl—4~(N—
maleimidomethyl)— cyclchexanedwcarboxylate) linker (Fig. .
All of theses appaoraches haVe in common that there is no true site—specificty of the
coupling reaction. e linker—mediated, al conjugation is a stic process,
linker~mediated chemical ligation oads leads to heterogeneous mixtures of conjugated
proteins that may differ in their therapeutic efficacy and/or diagnostic potential, Obviously,
conjugates also represent a significant challenge in the
mixtures of protein—payload
for therapeutic conjuagtes, as batch~to~batch variation and/or
tory approval process
variations in the active pharmaceutical ingredient (AH) are negatively viewed by regulatory
authorities due to potential safety concerns.
have long been overlooked as chers Were convinced the
Non—cleavable Linkers
cleaving of the linker was the most reaSOnable way to free the drug. HOWever, conjugates
can, upon binding to amernbarne or, get rapidly internalized and once internalized, the
immuncligand can be degraded to the point where the payload, e.g., the drug is exp03ed.
One prominent example, thicether linkers, use the SMCC (N.succinimidyl~4 ~(N—
maleimidomethyl} cycloheXane—l—cal‘boxylate) linker (See Fig. 14a, structure 2).
of the coupling
All of theses approaches haVe in common that there is no true site~specificty
reaction. Because linker~rnediated, chemical conjugation is a stochastic s, linker~
mediated chemical ligation of ds leads to heterogeneous es of conjugated
cy and/or diagnostic ial. Obviously,
proteins that may differ in their therapeutic
mixtures of protein~payload conjugates alSO represent a significant challenge in the
approval process for therapeutic gtes, as batch-to-batch variation and/or
regulatory
viewed by regulatory
variations in the active pharmaceutical ingredient (AM) are negatively
authorities due to potential safety concerns.
ing to another preferred embodiment of the inyention, the immunoligand comprised
in the immunoligand/payload conjugate is at least one selected from the group consisting of
or fragment, and/or
an dy, modified antibody format, antibody derivative
' an antibody mimetic
Preferably, in this ment, as substrate for the
a small molecular payload is rendered
sequence~specific transpeptidase by ng of apeptide of lees than 13 amino acids to the
to the nini
small molecular payload, such that it can be conjugated by a transpeptidase
said
of monoclonal antibody containing C~terminal modifications recognized by
transpeptidases. Such Cuterminal modifications may be ned on either both heavy
, or both light chains, or of heavy and light chains of a full—length antibody, thereby
either drug—t0—antibcdy ratio
allowing generation of a pecifically conjugated ADC with
of 2 01‘ 4 (DARZ or DAR4).
According to another preferred embodiment of the invention, the immuncligand binds at
least one entity selected from the group consisting of
- areceptor
‘ an antigen,
- apgrowth factor
- a cytokine, and/0r
- a hormone
a cell surface
As used herein, the term "receptor“ means a cell surface le, preferably
molecule that (i) binds specific, or groups of specific, signalling molecules (Le, a receptor,
like, e.g., the VEGF receptor), and/or (ii) has no known ligand (ie. an orphan receptor, like,
of cells,
are expressed on the surface of apopulation
e.g, HERZ/neu). The l receptors
domain of such a molecule (whether such a form
or they merely represent the extracellular
exists naturally or not), function in the
or a soluble molecule performing natural binding
, a cell or organ. Preferably, such receptor is a member of a signalling
or within
cascade that is involved in apaiticular pathogenic process (e. g, a or that belongs to a
of a cell or particle that
signalling cascade of a growth factor), or is expressed on the surface
is inVclVed in apatholcgical process, e.g., a cancer cell.
that has the ability to induce a ic
As used herein, the term ”antigen" means a substance
immune (cg, ion
response, and may include surface proteins or protein complexes
cancer cell.
channels). Often times, antigens are associated to pathogenic entities, cg, a
As used herein, the term ”cytolcine” refers to small cell— signaling protein molecules that are
Secreted by numerous cells and are in
a category of signaling molecules used extensively
intercellular communication. Cytolcines can be fied as proteins, peptides, or
glyeoproteins; the term dne" encompasses a large and diverse family of regulators
- ed throughout the body by cells of diverse embryological .
As used herein, the term ”growth factor" relates to naturally occurring substances capable
factor
stimulating cellular growth, proliferation and cellular differentiation. Usually a growth
is a protein or a steroid hormone. Growth factors are important for ting a variety of
cellular processes.
As used herein, the term 'fhormone” relates to a chemical released by a cell, a gland, or an
out messages that affect cells in other parts of the
organ in one part of the body that sends
organism. The term encompasses peptide hormones, lipid and phospholipid~derived
hormones including steroid hormones, and monoamines.
In case the immunoligand binds a or or an n, the immunoligand—payload
conjugate can for example be directed to a specific site, e.g., to apathogenio entity, eg, a
cancer cell, Where the payload, eg. a toxin or a herapeutic agent, is delivered, Thus,
the systemic toxicity or" the toxin or the chemotherapeutic agent is reduced, While the local
concentration of the latter at the site of action is increased, thus provding a better efficacy
while side effects are reduced, Furthermore, arespective signalling cascade can be inhibited
marker the latter can thus be
by the g of the immunoligand. In case the payload is a
used to mark a specific site, e.g., a cancer cell charcterlzed by a given surface antigen
detected by the immunoligand, for diagnosis.
and!or ahormone, the
In case the ligand binds a growth factor, a cytokine,
innnunologand/payload conjugate can for example be directed to the site the growth factor
ne or e us'uall binds to, in oder to deliver the payload in a site~Specific manner.
Further, arespective signalling cascade can be inhibited by the binding of
immunoligand.
As used herein, the term “to bind“ means the well~understood interaction or other
nonrandom association between ligands, e,g., antibodies, or antibody fragments,
their targets. Preferably, such binding reaction is characterized by high specifity and/or
ivity to the target. Preferably, the g reaction is characterized by a dissociation
constant (Kd) 5 103 M, preferably 5 10'4 M, 5 10‘5 M, 5 10‘5 M, g 10‘7 M, 5
'8 M, 5 10‘9
M, and most preferred 5 10‘1“.
‘ Acccording
to apreferred embodinient of the invention, it is provided that at least one
catalytic domain ofthe‘ ce—specific eptidase is fused to the N—terminus or the C~
terminus of either the immunoligand orthe payload.
Such fusion may take place by recombinant engineering, or by chemical coupling, In this
embodiment, the enzymatic activity leading to the site—specific oonmjugation of the
immunoligand to the payload does not need to be added to the reaction as a separate
recombinant enzyme, but is rather part ofprotein ate to be conjugated.
Preferably, the sequence specific eptidase is at least one selected from the group
consisting of
- a sortase, or one or more fragments or derivatives thereof
- a spilt—intein, or one or more fragments or derivatives f.
the payload,
In apreferred embodiment, where the tranSpeptidase is a sortase, e.g., atoxin, is .
preferably rendered as ate for sortase conjugation by addition of a small number of
glycine amino acid residues, preferably 3 or 5 glycine residues.
In another preferred embodilnent, where the transpeptidase is a split intein, e. g., a Ssp GyrB
split intein, the payload, e.g., a toxin is rendered as ate for split intein conjugation by
addition of less than 13 amino acid residues of the sequence GVFVEN—SXD, X being any
amino acid and n being an integer between 2 O and g 5.
inteins for the generation of
The use of transpeptidases, preferably sortase enzymes and split
antibody drug conjugates, in which small lar Weight toxins are conjugated to full—
length antibodies, has not yet been described in the prior art (Panowski et a1. (2014)).
Sortase enzymes have been identified in a variety of gram~positive ia, like
Staphylococcus, Streptococcus and Pneumococcus s, and catalyze, in vivo, the
coupling of Virulence factors to cell wall proteoglycans, in order to change the surface
ure of the bacteria for evading an efficient immune reSponse by the infected host
(Mazmanian et a1. (1999)).
The sortase A enzyme of the gram~pcsitive bacterium Staphylococcus aureus has been
characterized first (Ton—That et a1. (1999)) and has subsequently been characterized further
as atool for many protein modifications ji ).
One beneficial feature, of soitase enzymes is that the two molecules to be conjugated only
require short peptide tags (“sortase tags"), which in case of lococcus aureus sortase A
is for example LPXTG at the Cuterminus of one molecule (e.g., the payload), and "a short 3
to 5 amino acid glycine stretch at the N—terminus of the other molecule (cg, the
immunoligand, see Fig. 1), These peptide tags can either be fused to the molecules, or
utilize
conjugated thereto by means of conventional crosslinldng chemistry. This allows to
of small
the system on one hand for the on of two proteins, but also for the conjugation
In case
molecular weight compounds, preferably small molecular weight toxins to proteins.
is NPQTN
of Staphylococcus aurcus sortase B, the respective sertase motif
Inteins, which have originally been diScovered as protein s that can remOVe (splice)
themselves out of precursor proteins by cleavage of peptide bonds and new peptide—bond
formation (Xu et a1. (1993)) (Fig. 2a).
Naturally morning and artificial split—inteins involve that the intein coding region has been
split into N~intein and in domains, which can be attached to different proteins or
peptides in such Way that, subsequently the lrans~splicing of the extein domains (Fig. 2b)
leads to the conjugation of the two proteins
Split—inteins have thus been utilized for the covalent coupling of N~extein and C—extein
moieties, and also for the purification and/or aiization of proteins (Elleuche ).
One embodiment disclosed herein is to utilize split~inteins for the conjugation of small
molecular weight compounds, preferably small molecular weight toxins and other small
than 13. amino acids
molecule , in Which a short C—extein peptide sequence of smaller
is coupled to molecules of any size, similar to the short glycine amino acid stretch ed
for sortase—mediated transpeptidation.
addition of a short glycine stretch (> 2 glycine residues) to a
In case of soitase enzymes
molecule of choice is sufficient to allow the molecule to be conjugated to irnmuncligands
A of
containing a penta~peptide sortase recognition motif, like e. g, LPXTG in case of sortase
S. aureus. In case of split~inteins, minimally a short 12 aminc~acid GVFVHNSAGSGK
from Ssp GyrB and
amino acid stretch containing a short, 6 amino acid in (GVFVHN)
a short C~extein (here: SAGSGK) are sufficient to modifi any payload molecule, preferably
a small molecular weight toxin, for split~intein mediated conjugation to immuncligands
containing the Nnintein domain of the SSp GyrB split intein (Voflmann et a1. (2009)). Other
split inteins, in which functional intein domains can be reduced to small <13
amino acid
long peptide stretches may be utilized as Well.
Even if, in the literature, split~enzymes are not always referred to as s, they qualify
results in the breakage of apeptide bond and the
as such, because the reaction they catalyze
ion of a new peptide bond and this can be Viewed as transpeptidases, because the
bond is ered to a new peptide bond.
energy of an existing peptide
Other than chemical conjugation, the transpeptidasamediated conjugation occurs under
physiologic aqueous buffer conditions and logic temperatures, thereby minimally
reaction, This feature ensures
affecting the n or antibody ity in the conjugation
optimal functionality of the resulting conjugate
ding to another red embodiment of the invention, it is provided that the payload
comprised in the immunoligand/ payload conjugate is at least one selected from the group
consisting of
amarlcer
- ssing tag, and/or
- adrug.
molecule or
The term "marker" (also called "detection tag“), as used herein, may refer to any
moiety that ses one or more appropriate chemical substances or enzymes, which
wo'2014/140317 2014/055173
directly or indirectly generate a detectable compound or signal in a chemical, physical or
enzymatic reaction.
The term "processing tag” as used herein, may encompass affinity tags, solubilizatlcn tags,
chromatography tags and epitcpe tags, Affinity tags (also used as purification tags) are
appended to proteins so that they allow purifification of the tagged molecule fiom their
crude biological Source using an affinity technique, These e chitin-binding protein
(CBP), maltose binding protein (MBP), and glutathione~S~transferase (GST). The poly(His)
tag, preferably a 6XHis tag, is a Widely~used processing tag; it binds 'to metal matrices.
Solubilizaticn tags are used, especially for recombinant proteins expressed in chaperone~
deficient species such as E. coli, to assist in the proper folding in proteins and keep them
from precipitating. These include thioredoxin (TRX) and poly(NANP). Some affinity tags
haVe a dual role as a solubilization agent, such as MBP, and GST.
Chromatography tags are used to alter tographic properties of the protein to afford
these t of
different resolution across a particular separation technique. Often,
polyanionic amino acids, such as FLAG~tag
antibodies
e tags are short peptide sequences which are chosen because high—affinity
are y d from
can be reliably ed in many different species. Epitope tags
the ,
Viral genes, which n their high immunoreactivity. Epitope tags include eg.
and‘ HA~tag. These tags are particularly useful for western blotting,
MYC—tag,
immunofluorescence and immunoprecipitatlon experiments, although they also find use in
protein purification.
Processing tags find many other , such as specific enzymatic modification (such as
biotin ligase tags) and chemical modification (FLASH) tag. Often tags are combined to
produce multifunctional modifications of the protein.
Preferably, said marker is at least one selected from the group consisting of
or protein
a radiolabel, preferably a radioacthely labelled peptide
or protein, and/or
a fluorescent label, preferably a fluorescent peptide
- an enzyme label, preferably aperoxidaSe.
PCTIEP2014/055173
This enumeration of potential marker payloads is by no means restrictive. According to
the group consisting of
another preferred embodiment, said drug is at least one ed from
r a. cytokine
. a radioactive agent
- an anti~inflammatory drug
- atoxin, and/or
- a chemotherapeutic agent
This enumeration of potential drug payloads is by no means restrictive. As uSed herein, the
term “cytokine” refers to small cell~signaling protein molecules that are secreted by
in intercellular
numerous cells and are a category of signaling molecules used extensively
communication. Cytokines can be classified as proteins, es, or glycoproteins; the term
"oytoldne" encompasses a large and diverse family of regulators produced hout
body by cells of diverse logioal origin. in the present context, cytokines are for
cell.
e meant to impair, or even kill, pathogenic entity, e.g., a cancer
" relates to an entity which has at least one atom
As used herein, the term ”radioactive agen
With an unstable nucleus, and which is thus prone to undergo radioactive decay, resulting
beta particles, Which
the emission of gamma rays and/or subatomic particles such as alpha or
have a cell killing effect. In the present context, radioactive agents are meant to impair, or
even kill, pathogenic entity, e.g., a cancer cell.
that reduce
As used , the term “anti—inflammatory drug" relates to compounds
inflammation. This can be, e.g., steroids, just like specific glucooorticoids (often referred to
corticosteroids), which reduce inflammation or swelling by binding to glucocorticoid
nflammatory drugs S),
receptors. The term further encompasses non—steroidal
COX enzyme synthesizes
which counteract the cyclooxygenase (COX) . On its own,
prostaglandins, ng inflammation. In Whole, the NSAle prevent the prostaglandins
the pain. The term r encompasses
from ever being synthesized, reducing or eliminating
which are a class of peptides
IrnIrmne Selective Anti~lnflammatory Derivatives (lmSAle),
that alter the activation and migration of inflammatory cells, which are immune cells
responsible for amplifying the inflammatory response.
As used herein, the term ” relates to a molecule Which is toxic to a living cell or
organism. Toxins may be peptides, or proteins or ably small lar weight
that or even kill, pathogenic entity, e. g., a cancer cell.
compounds, are meant to impair,
, as meant herein, encompass, in particular, cellular toxins. Preferably, said toxin is a
small molecular toxin, i.e., having a molecular weight of S 2500 Da.
As used herein, the term "chemotherapeutic ”
agen relates to molecules that have the
functional property of inhibiting a development or progression of a neoplasm, particularly a
malignant (cancerous) lesion, such as a carcinoma, sarcoma, lymphoma, or ia.
Inhibition of asis or angiogenesis is frequently a property of anticancer or
chemotherapeutic agents. A herapeutic agent maybe a cytotoxic or chemotherapeutic
agent. Preferably, said chemotherapcuic agent is a small molecular weight cytcstatio agent,
which inhibits or suppreSSes growth and/or multiplication of cancer cells.
Conjugating cytoldnes, radioactive agents, toxins or chemotherapeutic agents to an
immunologand to their
can help to reduce side effects and risks related admmistration,
because
a) the immunoligand directs the conjugate to a specific site, e.g., to apathogenic , e. g.,
a cancer cell Where the payload effects its toxic function. Thus, the systemic toxicity of the
payload is reduced, while the local concentration of the latter at the site of action is
increased, thus provding ahetter efficacy while side effects are reduced,
h) it can be provided that the conjugate is alized by the pathogenic entity, in such way
its desired cytotoxic
that after internalization, the payload is released and only then develops
function, i.e., Without affecting the surrounding cells or tissue.
The following table is a non restrictive list of potential targets/antigens (1st ) and
existing immunoligands targeting the former (2nd column). The 3rd column examples for
shows a non restrictive list of potential toxins, cytoldnes or chemotherapeutic agents. Note
that the examples from the 1st and the 3” column can be combined with one another ad
libitum. while eds of further targets and ds exist. Respective /payload
combinations not explicitly mentioned in the table are encompassed by the scope of the
present invention.
target/antigen example of an existing payload
immunoligand
elial Growth ' Cetuximab Maytansinoides, e.g,
Mertansine, Ansamitooin'
receptor (EGFR)
sin, DM4, DMl
CD20 Ritmdmab, Ibriturnomab, Calioheamioins, e.g.
Tosituinoinab (mAb) Ozogamioin
CD44 Doxombicin
Cantuzumab (mAb) bacterial Pseudornonas in
PE38
Brentuximab (inAb) thyl Auristatin F
(MMAF); Monomethyl
Auristatin E (MMAE)
inotuzumab (mAb) Pynolobenzodiazepine QED)
transmembrane Glembaturnumab (mAb) Interleuldn— 10 (1110) (ant-i—
glycoprotein NMCB inflammatory)
(GPNMB)
CD56 Lorvotuzumab (mAb) Diphtheria toxin
CanAg huCZ42 (mAb) Tunior necroris factor (TNF)
luteinizing honnone [DaLys(6)] LHRH RNase
releasing hormone (LI-RH)
receptor
Pro state~ Specific membrane Yttrium;U
antigen (PSMA)
CD74 Milatuzumab (mAb) Iodine 131
CD70 Lutetium177
AGS— 16 poiine
Integrin Methotrexate
CD19 Taxanes, e.g., axel or
Dooetaxel
Interleuldn 2 receptor Interleukin—2 (Proieuldn)
CD3 UCHTl (mAb)
extra domain B of LlQ—SIP (soFV filSCd in
,fibroneotin with the constant domain
SLAMF7 (CD319) Elotuzumab (ruAb)
Indatmcimab (mAb)
Trastuzumab (mAb)
Gemtuzurnab (mAb)
According to yet another embodimmit of the t invention, the immunoligand comprises
at least two subunits each being conjugated to apayload.
Preferably, at least two different payloads can be conjugated to the at least two subunits.
This option provides a Versatile toolbox with which a large Vaiiety of different
irnmunoligand‘payload constructs can be created. For example, a bispecific dual~dcmain
immunoligand can be conjugated with tw0 different payloads, for example one marker and
one toxin.
Preferably the at least two different payloads are toxic payloads interfering with one or more
cellular pathways.
Such embodinmnt can be accomplished, e. g., by conjugating the two
different payloads to
each the 2 light chains of a full-length antibody, and to the 2 heavy chains of a filll length
antibody, respectively, by utilizing two different sortase s, recognizing different
different C—terminal ations
sortase recognition motifs, plus an antibody that ns
at heavy and light chains sing the respective recognition motifs for said different
sortase enzymes.
is composed of each two
In such Way, an dy Drug Conjugate can be created which
full~length Ig light chains and Ig heavy , ning different payloads covalently
attached to said heavy and light chains.
results, preferably, in the synchronous conjugation of the at least two
Such embodiment
subunits for the tion of nnmunoligand payloads with equal payload conjugation
each of said subunits.
According to another preferred embodiment, said immunoligand with at least two subunits is
being conjugated with at least 80% efficiency per conjugation site.
According to yet another preferred embodiment, said immunoligand with at least tWO
subunits contains a peptide spacer sequence of at least two amino acids, preferably 2-5
amino acids, ed to the nini of at least one of the two subunits
This approach results, advantageously, in synchronous conjugation of the at least th
subunits for the tion of immunoligand ds with equal payload conjugation to
the present inVention, the method
each of said subunitsAccording to another embodimmt of
allows a stoichiometn'cally defined relationship between immunoligand and payload.
According to this embodiment, a snict quantitatiVe relationship betWeen immunoligand
the overall performance of
payload can be provided, thus improving the ucibility and
the respective immunoligand/payload conjugate particularly for clinical and/or therapeutic
applications. This is accounted for by the sequence» and/or site specificity of the
transpeptidase used.
defined relationship
According to aparticularly prefered embodiment said stoichiometrically
d C~terminally
between immunoligand and payload is achieved by removal ofpartially
be carried out via affinity
d immunoligand substrate, Such removal can, for example,
purification Said approach s preferably, in a homogeneous drug to immunoligand
ratio.
Preferably, said removal is carried out by affinity purification using an affinity tag
methods
positioned ninal to the transpeptidase recognition motif or . Standard
imown to the skilled person can be used for this purpose, e.g., HIS tag, CBP tag, CYD
HPC (heavy chain of
(covalent yet dissociable NorpD peptide) tag, Strep II tag, FLAG tag,
protein C) tag, and the GST and MBP protein fusion tags.
method allows a site—specific
According to another embodiment of the present invention, the
it is ensured
conjugation of a payload to the immunoligand. According to this embodiment,
of the immunoligand, or the
that the ation s does not interfere with the ty
payload, itself, thus improving the reproducibility and the l performance of the
respective. immunoligand/payload conjugate ularly for clinical and/or therapeutic
the and/or site specificity of the
ations. This is accounted for by sequence~
is not site
transpeptidase used. Other than with conventional binding chemistry, which
the payload is conjugated to
c in most caSes, or has limited site specificity (cg, when
like in Arg, Lys, Asn or Gin), the binding site can thus be exactly
a free amino group,
determined, of the irnmunoligand
so that the characterizing features (e.g., target specificity)
or the payload (e.g., toxicity) are not affected.
obtained with a method
The invention finther provides an immunoligand/paylcad conjugate
according to the above~mentioned embodiments.
the group consisting of an
Preferably, said immunoligand/payload conjugate is selected from
antibody/drug conjugate, and/or an antibody/marker conjugate.
The inVention further provides the use of an immunoligand/paylcad conjugate according to
the above mentioned embodiments for
in vitro or in vivo diagnosis of a given pathclogic condition
in vitro or in viva prediction or prognosis with respect to a given pathologic
condition
- the treatment of a human or animal subject suffering from or being at risk
developing a given pathologic condition, and/or
- research and/or development puiposes
Preferably, said pathclogic condition is at least one ed from the group consisting
- Neoplastic disease
Autoimmune e
' Neurodcgenerative diSease, and/or
Infectious disease
have
In all theSe eaSes, the immunoligand/payload conjugate according to the invention can
beneficial effects, e.g, by ing the latter to a specific site, e.g., a cancer cell, a site of
neuropathology, or a site of an autoimmune on,
The payload, e.g., a toxin, a chemotherapeutic agent, a cytokine or a drug is delivered at said
site, eg., to deplete a cancer cell, to act anti—proliferatively on a cancer
cell, to diSSOlve a
plaque, to inhibit autoantibodies, and the like.
the invention can have
In all theSe cases, the immunoligand/payload conjugate according to
beneficial effects, e.g, by directing the latter to a specific site, e.g., a cancer cell, Where the
payloadJ agent, is deliveredJ e. g., to e a cancer cell,
e.g. a toxin or a chemotherapeutic
to act roliferatively on a cancer cell.
Thus, the systemic toxicity of the toxin or the chemotherapeutic agent is reduced, While the
local of the latter at the site of action is increased, thus provding abetter efficacy while side
effects are reduced. Further, a respective ling cascade can be inhibited by the binding
2014/0551’73
WO 40317
thus be used to mark a
of the immunoligand. In case the payload is a marker the latter can
specific site, e.g., a cancer cell charcterized by a given surface antigen ed by the
immunoligand, for diagnosis.
and l
The site—specifity of the conjugating process ensures a high reproducibility
performance of the tive immunoligand/payload conjugate particularly clinical
and/or therapeutic applications.
The term astic disease", as uSed herein, refers to an abnormal state or ion of
cells cell growth or sm. In a more
or tissue characterized by rapidly proliferating
specific meaning, the term relates to cancerous processes, e. g., tumors and/or leulcemias.
The term "neuropathological diseases” encompasses, among others, neurodegeneratiVe
diseases, neuroinflammatory diseases or seizure disorders.
Neurodegenerative diseases or function of
are characterized by progressive loss of structure
neurons, including death of neurons. Many neurodegenerative diseases including
Parkinson's, mer's, Huntington's, Amyoirophic lateral sis and Multiple
Sclerosis occur as a result of neurodegeneratlve processes. There are many parallels
assemblies as Well
betWeen different neurodegenerative disorders including atypical protein
can further be found in many different leVels
as induced cell death. Neurcdegeneraticn
al circuitry ranging from molecular to systemic.
diseases” have apartially
The terms "Neurodegenerative diseases” and "Nemoinflammatory
overlapping scope. Inflammatory responses are ahallmark of neurodegenerative disease
participate, or contribute, through ent mechanisms in the neuronal cell death. The
these
tryptophan catabolism along the Kynurcnine pathway (KP) represents. one of
mechanisms.
abnormal signaling between
Seizure disorders are brain disorders which are characterized by
brain cells. Seizure disorders can affect part of the brain (Partial seizures) or the entire brain
(Generalized seizures). The most prominent Seizure disorder is epilepsy.
The term ”Autoimmune diSease", as used herein, encompasses specific autoimmune
diseases, in which an autoimmune response is directed against a single , such as
Crohn's diSease and ulcerative colitis, Type I es mellitus, myasthenia , vitiligo,
Graves‘ disease, Hashimoto's disease, Addison' s disease and autoimmune gastritis and ‘
autoimmune hepatitis. The term also encompasses non—organ specific mune diseases,
in which an autoimmune response is directed t a component t in several or
many organs throughout the body.
Such autoimmune diseascs include, for example, rheumatoid arthritis, disease, systemic
lupus erythematosus, progressive systemic sclerosis and variants, polymyositis and
deimatomyositis .
Additional autoimmune diseases include pernicious anemia including some of autoimmune
gastritis, primary biliary cirrhosis, autoimmune thrombocytopenia, Sjogren's syndrome,
multiple sclerosis and psoriasis. One skilled in the art understands that the methods of the
invention can be applied to these or other autoimmune diseases, as desired.
disease that
The term “infectious disease” as used herein, includes, but is not d to any
is caused by an ious organism, Infectious organisms may comprise viruses, (eg,
virus
single stranded RNA viruses, single stranded DNA viruses, human immunodeficiency
(HIV), hepatitis A, B, and C virus, herpes simplex virus (HSV), cytomegalovirus (CMV)
n~Barr virus (EBV), human oma virus (HPVDppaIasiteS (cg, protozoan and
metazoan pathogens such as Plasmodia species, Leishmam'a species, Schistosoma species,
osoma species), bacteria (cg, Mycobacteria, in particular, M. tuberculosis,
Salmonella, Streptococci, E. coli, Staphylococci), fungi (e,g., Candida species, Aspergillus
species), Pneumocystz's carinii, and prions.
The invention fithher provides a
a low molecular~vveight payload modified with Glyn—
modification, wherein, n>l, preferably n=3 or n=5,
As used herein, the term "Gly,,~rnodificaticn” means that an oligo~ or polypepide consisting
of n Glycin residues has been added to said payload. As used herein, the term “10W
lar~vveight payload nd” shall ass payloads that have a molecular
weight of 2500 Da or less.
Saidpayload is, ably, at least one selected from the group consisting of
a marker,
- aprocessing tag, and/or
~ a drug.
Said marker is at least one selected from the group consisting of
- or protein
a abel, preferably aradioactively labelled peptide
' or protein, and/or
a fluorescent lab e15 preferably a fluorescent e
- an enzyme label, preferably aperoxidase.
Said drug is at least one selected from the group consisting of
a cytokine
aradioactivc agent
- atoxin, and/or
- a chemotherapeutic agent
alreadyJ said toxin is preferably a small molecular toxin, i.e., having a As disuSSed above
selected firom the group
molecular weight of _<_ 2500 Da, Preferably, said toxin is at least one
constisting of p
' Maytansine
- Monomethyl auristatin, and/or
Alpha~amanitin
are shown in
or derivatiVes of the former. Examples for such Glyn—modified toxions
structures lto 9 ofFig. 14A a 14C
low molecular—Weight d
The invention r provides the use of a glycine—modified
for conjugation thereof to an irnmunoligand.
Preferably, and as ned above, the conjugation is a transpeptidease—mediated
conjugation, preferably with a sortase and/or a split . Likewise preferably,
immunologand is an antibody.
Preferably, said immunoligand is an antibody. In such way, an antibody drug ate
(ADC) can be provided.
Preferably, the immunologand—payload conjugation reaction is performed in crude cell
culture Supernatant. This means that, preferably, the conjugation reaction may take place
With unpurified or only partially purified components.
Experiments and Figures
in detail in the drawings and
While the inVention has been illustrated and described
foregoing description, such ration and description are to be considered illustrative
ary and not restrictive; the invention is not limited to the disclOSed embodiments.
Other variations to the disclosed embodiinents can be understood and effected by those
skilled in the art in cing the claimed invention, from a study of the
drawings, the
the word "comprising" does not exclude
disclosure, and the appended claims. In the claims,
other elements or steps, and the indefinite article ”a" or ”an” does not exclude a plurality.
claims does
The mere fact that certain measures are recited in mutually different dependent
of these measures cannot be used to advantage. Any
not indicate that a combination
construed as limiting the scope.
reference signs in the claims should notbe
All amino acid sequences disclosed‘herein to C—terminus;
are shown from N~terminus
‘—>3'.
nucleic acid sequences disclosed herein are shown 5
of monoclonal
e 1: Cloning of sion vectors and expression a CD19
antibody with C~terminal LPETG sortase tag and additional 6x—His and strepll
affinity purification tags
In order the C~terminal conjugation of a payload to an dy, first a
to perform
recombinant antibody needs to he expressed that contains C—terminal modifications,
including arecognition motif, e.g. for sortase A of Staphylococcus aureus.
For this, first ORFs for heavy and light chains of an anti~human CD 19 specific antibody
be gene synthesized, e.g. at contract research organizations (CROs) offering such gene
synthesis services, like e. g. Genscript (WWWgenscriptcom, away, NJ, USA). As an
example, the heavy and light chain Sequences of a humanized un1an CD 19 antibody
hBUl2 can be found in patent US 8,242,252 B2 under Seq 53 (variant HF) and Seq 5 8
follows:
(variant LG), The v H and v L regions of this anti~human CD19 antibody are as
'19 antihody hBU12):
SEQ ID NO 1(vH coding region cfhurnaniZed anti—human CD
ATGGGATGGAGCTGGATCTTTCTTTTCCTCCTGTCAGGAACTGCAGGTGTCCATTGTCAGGTTCAGCTGCAAGA
GTCTGGCCCTGGGTTGGTTAAGCCCTCCCAGACCCTCAGTCTGACTTGTACTGTGTCTGGGGGTTCAATCAGCA
CTTCTGGTATGGGTGTAGGCTGGATTAGGCAGCACCCAGGGAAGGGTCTGGAGTGGATTGGACACATTTGGTGG
GATGATGACAAGAGATATAACCCAGCCCTGAAGAGCAGAGTGACAATCTCTGTGGATACCTCCAAGAACCAGTT
TAGCCTCAAGCTGTCCAGTGTGACAGCTGCAGATACTGCTGTCTACTACTGTGCTAGAATGGAACTTTGGTCCT
ACTATTTTGACTACTGGGGCCAAGGCACCCTTGTCACAGTCTCCTCA
This translates to the ing amino acid sequence (SEQ ID NO 2):
MGWSWIFLFLLSGTAGVHCQVQLQESGPGLVKPSQTLSLTCTVSGGSISTSGMGVGWIRQHPGKGLEWIGHIWW
DDDKRYNPALKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARMELWSYYFDYWGQGTLVTVSS
' SEQ ID NO 3 19 antibody hBUlZ)
(v L coding region ofhumanized anti-human CD
ATGAAGTTGCCTGTTAGGCTGTTGGTGCTGATGTTCTGGATTCCTGCTTCCAGCAGTGAAATTGTTCTCACCCA
GTCTCCAGCAACCCTGTCTCTCTCTCCAGGGGAAAGGGCTACCCTGAGCTGCAGTGCCAGCTCAAGTGTAAGTT
ACATGGACTGGTACCAGCAGAAGCCAGGGCAGGCTCCCAGACTCCTGATTEATGACACATCCAAACTGGCTTCT
CCAGCAAGGTTCAGTGGCAGTGGGTCTGGAACAGATTTTACACTCACAATCAGCAGCCTGGAGCGAGA
TGCTGTCTATTACTGTTTTCAGGGGAGTGTAIACCCATTCACTTTTGGCCAAGGGACAAAGTTGGAAA
TCAAA
This translates to the following amino acid ce (SEQ JD NO 4):
MKLPVRLLVLMFWIPASSSEIVLTQSPATLSLSPGERATLSCSASSSVSYMHWYQQKPGQAPRLLIYDTSKLAS
GIPARFSGSGSGTDFTLTISSLEPEDVAVYYCFQGSVYPFTFGQGTKLEIK
These sequences can be fused to human IgGi constant heavy and constant light chain
realize the method disclosed
regions containing additional C~tenninal tags, in order to
herein.
WO 40317
In order to realize the invention, the human constant IgGl heavy chain region can be
sortase
synthesized with additional 3'~codons, encoding an LPETGSz‘aphylococcus aureus
and a
A recognition tag, ed by a 6XHis tag (HIE-IHHH), a MYC~tag (EQKLISEEDLI
follows:
strep II tag (WSHPQFEK) resulting in a sequence, which is as
3' extension
SEQ ID NO 5 (human IgG1 heavy chain constant coding region with me
encoding an LPETG sortase tag, an 6XI-Iis tag and a strepII tag):
AGCACCAAGGGCCCATCTGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCTGCCCTGGG
CTGCCTGGTCAAGGACTACTTCCCTGAACCTGTGACAGTGTCCTGGAACTCAGGCGCCCTGACCAGCGGCGTGC
ACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGC
TTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCGAGCAACACCAAGGTGGACAAGAAAGTTGAGCC
CAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAGTCTTCC
TCTTCCCCCCAAAACCCAAGGACACCCTCATGAECTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTG
AGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCC
GCGGGAGGAGCAGTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATG
GCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAICTCCAAAGCCAAA
GGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCT
GACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACAECGCCGTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACA
ACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAG
AGCAGGTGGCAGCAGGGGAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACACAGAA
GAGCCTCTCCCTGTCTCCGGGTAAACTGCCCGAGACCGGCCACCACCACCACCACCACGGCGAGCAGAAGCTGA
TCAGCGAGGAGGACCTGGGCTGGAGCCACCCCCAGTTCGAGAAGTAG
amino acids of the tags
This translates to the following amino acid sequence (SEQ ID NO 6 ,
are underlined):
STKGPSVEPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS
LGTQTYICNVNHKESNTKVDKKVEPKSCDKEHTCPPCPAPELLGGPSVFLFPPKPKDTLMI SRTPEVTCVVVDV
SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI SEEK
QVYTLPPSRDELTKNQVSLTCLVKGFYPSD:AVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDK
SRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGKLPETGHHHHHHGEQKLI SEEDLGWSHPQFEK-
Fuitheirnore, the human constant IgGl kappa light chain region can be synthesized with
onal 3‘~codons, encoding an LPETG Staphylococcus auraus sortase A recognition tag,
which is
followed by a 6XHis tag and a strep II tag (WSHPQFEK) ing in a sequence,
as follows:
SEQ ID NO 7 (human IgG1 kappa light chain constant coding region with in~frame
and a sirepll tag):
extension encoding an LPETG sortase tag, an 6XHis tag, a Myc tag,
ACGGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGT
GTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTA
ACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGC
AAAGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA
CAACAGGGGAGAGTGTCTGCCCGAGACCGGCCACCACCACCACCACCACGGCGAGCAGAAGCTGATCA
GCGAGGAGGACCTGGGCTGGAGCCACCCCCAGTTCGAGAAGTAG
This translates to the ing amino acid sequence (SEQ ID NO 8, amino acids of the tags
are underlined):
SKDSTYSLSSTLTLS
TVAAPSVFEPPSDEQLKSGTASVVCLLNNFWREAKVQWKVDNALQSGNSQESVTEQD
KADYEKHKVYACEVTHQ‘GLSSPVTKSFNRGECLPETGI—lHI—IHHHGEQKL I SEEDLGWSHPQFEK ))
' The coding regions for LPETG sortase tag, 6XHis and strepll tagged heavy
complete
light chains of the humanized anti—human CD19 antibody hBUlZ are then as s:
SEQ ID NO 9 (Complete human IgGl VH-CHheavy chain coding region for hBUlZ with C~
terminal LPETG sortase tag, 6xH1's tag, Myc tag, and a strepll tag):
CTGCAAGA
ATGGGATGGAGCTGGATCTTTCTTTTCCTCCTGTCAGGAACTGCAGGTG’I‘CCAT’I‘GTCAG
GTCTGGCCCTGGGTTGGTTAAGCCCTCCCAGACCCTCAGTCTGACTTGTACTGTGTCTGGGGGTTCAATCAGCA
CTTCTGGTATGGGTGTAGGCTGGATTAGGCAGCACCCAGGGAAGGGTCTGGAGTGGATTGGACACATI'TGGTGG
CAGTT
GATGATGACAA GAGATATAA CCCAGCCCTGAAGAGCAGAGTGACAATCTCTGTGGATACCTGZAAGAAC
GTGCTAGAATGGAACT’I‘TGGTCCT
TAGCCTCAAGCTGTCCAGTGTGACAGCTGCAGATACTGCTGTCTAC'I‘ACT
ACTATT'ITGACTACTGGGGCCAAGGCACCC’I’I‘GTCACAGTCTCCTCAGCTAGCACCAAGGGCCCATCTGTCTTC
CCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCTGCCCTGGGCTGCCTGGTCAAGGACTACTTCCC
TGAACCTGTGACAGTGTCCTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACCTTCCCGGCTGTCCTACAGT
CTGC
CCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGACCTACAT
AACGTGAATCACAAGCCGAGCAACACCAAGGTGGACAAGAAAG’ITGAGCCCAAATCTTGTGACAAAACTCACAC
ATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACA
GAAGACCCTGAGGTCAAG
CCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCAC
GAGGAGCAGTACAACAGCAC
TTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGG
GTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGAGTACAAGTGCAAGGTCT
CCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCATCTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGG’I‘G
TACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTA
TCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGC
TGGACTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTC
T'I‘CTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACACAGAAGAGCCTCTCCCTGTC‘I‘CCGGGTAA
ACTGCCCGAGACCGGCCACCACCACCACCACCACGGCGAGCAGAAGCTGATCAGCGAGGAGGACCTGGGCTGGA
GCCACCCCCAGTTCGAGAAGTAG
This translates to the ing amino acid ce (SEQ ID NO 10, amino acids of the
tags are underlined):
STSGMGVGWIRQHPGKGLEWIGHIWW
FLFLLSGTAGVHCQVQLQESGPGLVKPSQTLSLTCTVSGGSE
DDDKRYNPALKSRVTI SVDTSKNQFSLKLS TAVYYCAMLWSYYFDYWGQGTLVTvsSASTKGPSVF
GLYSLS SWTVPS s SLGTQTYIC
PLAPS SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQS
NVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSEEDPEVK
FNWYVDGVEVINAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAEEKT I SKAKGQPREPQV
YTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSi)GSFFLYSKLTVDKSRWQQGNV
FSCSVMHEALHNHYTQKSLSLSPGKLPETGHHHIHMGEQKL 1 SEEDLGWSI—[PQFEK .
SEQ D3 NO 11 (Complete human IgG1 VL—CLkappa chain coding region for hBU12 with
C~terminal LPETG sortase tag, 6XHis tag, Myc tag, and a strepll tag):
ATGAAGTTGCCTGTTAGGCTGTTGGTGCTGAIGTTCTGGATTCCTGCTTCCAGCAGTGAAATTGTTCTCACCCA
GTCTCCAGCAACCCTGTCTCTCTCTCCAGGGGAAAGGGCTACCCTGAGCTGCAGTGCCAGCTCAAGTGTAAGTT
ACATGCACTGGTACCAGCAGAAGCCAGGGCAGGCTCCCAGACTCCTGATTTATGACACATCCAAACTGGCTTCT
GGTATTCCAGCAAGGTTCAGTGGCAGTGGGTCTGGAACAGATTTTACACTCACAATCAGCAGCCTGGAGCCAGA
GGATGTTGCTGTCTATTACTGTTTTCAGGGGAGTGTATACCCATTCACTTTTGGCCAAGGGACAAAGTTGGAAA
TCAAAAGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCC
TCTGTTGTGTGCCTGCTGAATAAQTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCA
TAACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGA
CGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCC
GTCACAAAGAGCTTCAACAGGGGAGAGTGTCTGCCCGAGACCGGCCACCACCACCACCACCACGGCGAGCAGAA
GCTGATCAGCGAGGAGGACCTGGGCTGGAGCCACCCCCAGTTCGAGAAGTAG
This ates to the following amino acid ce (SEQ ID NO 12, amino acids of the
tags are underlined):
MKLPVRLLVLMFWIPASSSEIVLTQSPATLSLSPGERATLSCSASSSVSYMHWYQQKPGQAPRLLIYDTSKLAS
GIPARFSGSGSGTDFTLTISSLEPEDVAVYYCFQGSVYPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTA
SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP
VTKSFNRGECLPETGHHHHHHGEQKLISEEDLGWSHPQFEK'
CD19 specific antibody
The coding regions for the heavy and light chains of the anti~human
as disclosed in SEQ 1D NOS 9 and 11, respectively, can then be synthesized with flanking
restriction enzyme sites (eg. Hindlll and Notl) such that they can be cloned into a standard
mammalian expression vector, such standard
as _pCDNA3.l~hygico (+) (Invitrogen), by
molecular biology methods known in the art.
The complete DNA sequence of pCDNA3.l~hyg1‘o (+)~IgI-I chain expression vector for the
tagged hBUlZ anti~hu1nan CD19 antibody Will be as follows:
SEQ ID NO 13 (coding region of human IgG1 VH—CH heavy chain for hBUlZ
vvith C—
and Hindlll and NotI
terminal LPETG e tag, 6xHis tag and a strepll tag underlined,
cloning sites shaded):
GACGGATCGGGAGATCTCCCGATCCCCTATGGTCGACTCTCAGTACAAECTGCTCTGATGCCGCATAGTTAAGC
CAGTATCTGCTCCCTGCTTGTGTGTTGGAGGTCGCTGAGTAGTGCGCGAGCAAAATTTAAGCTACAACAAGGCA
AGGCTTGACCGACAATTGCATGAAGAATCTGCTTAGGGTTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGCCA
GATATACGCGTTGACATTGATTATTGACTAGTTAETAATAGTAATCAATTACGGGGTCATTAGTTCATAGCCCA
GAGTTCCGCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCAACGACCCCCGCCCATT
GACGTCAATAATGACGTATGTTCCCATAGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGACTATT
TACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTACGCCCCCTATTGACGTCAATGAC
TGGCCCGCCTGGCATTAEGCCCAGTACATGACCTTATGGGACTTTCCTACTTGGCAGTACATCTACGT
ATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACATCAATGGGCGTGGATAGCGGTTTGACTCAC
GGGGATTTCCAAGTCTCCACCCCATTGACGTCAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCA
AAATGTCGTAACAACTCCGCCCCATTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAG
AGCTCTCTGGCTAACTAGAGAACCCACTGCTTACTGGGTTATCGAAATTAATACGACTCACTATAGGGAGACCC
AAGCTGGCTAGCGTTTAAACTTWCCATGGGATGGAGCTGGATCTTTCTTTTCCTCCTGTCAGGAACTGC
AGGTGTCCATTGTCAGGTTCAGCTGCAAGAGTCTGGCCCTGGGTTGGTTAAGCCCTCCCAGACCCTCAGTCTGA
CTTGTACTGTGTCTGGGGGT’I'CAATGAGCACTTCTGGTATGGGTGTAGGCTGGATTAGGCAGCACCCAGGGAAG
GGTCTGGAGTGGATTGGACACATTTGGTGGGATGATGACAAGAGATATAACCCAGCCCTGAAGAGCAGAGTGAC
AATCTCTGTGGATACCTCCAAGAACCAGTTTAGCCTCAAGCTGTCCAGTGTGACAGCTGCAGATACTGCTGTCT
ACTACTGTGCTAGAATGGAACTTTGG’I‘CCTACTATTTTGACTACTGGGGCCAAGGCACCCTTGTCACAGTCTCC
TCAGCTAGCACCAAGGGCCCATCTGTCTTCCCCCTGGCACCCTCOTCCAAGAGCACCTCTGGGGGCACAGCTGC
CCTGGGCTGCCTGGTCAAGGACTACTTCCCTGAACCTGTGACAGTGTCCTGGAACTCAGGCGCCCTGACCAGCG
ACACCTTCCCGGCTGTCCTACAGTCCTGAGGACTCTACTCCC’I‘CAGCAGCGTGGTGACCGTGCCCTCC
TTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGACAAGAAAGT
TGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAG
TCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTG
GACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGAC
AAAGCCGCGGGAGGAGCAGTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGC
GCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCATCTCCAAA
GCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGT
CAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGG
AGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTG
GACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACAC
GAGCCTCTCCCTGTCTCCGGGTAAACTGCCCGAGACCGGCCACCACCACCACCACCACGGCGAGCAGA
AGCTGATCAGCGAGGAGGACCTGGGCTGGAGCCACCCCCAGTTCGAGAAGTAWWTCGAGTCTAGAGG
GCCCGTTTAAACCCGCTGATCAGCCTCGACTGTGCCTTCTAGTTGCCAGCCATCTGTTGTTTGCCCCTCCCCCG
TGCCTTCCTTGACCCTGGAAGGTGCCACTCCCACTGTCCTT’I’CCTAATAAAATGAGGAAATTGCATCGCATTGT
CTGAGTAGGTGTCATTCTATTCTGGGGGGTGGGGTGGGGCAGGACAGCAAGGGGGAGGATTGGGAAGACAATAG
CAGGCATGCTGGGGATGCGGTGGGCTCTATGGCTTCTGAGGCGGAAAGAACCAGCTGGGGCTCTAGGGGGTATC
CCCACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCC
AGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCT’I‘TCCCCGTCAAGC
TCTAAATCGGGGCATCCCTTTAGGGTTCCGATTTAGTGCT’I‘TACGGCACCTCGACCCCAAAAAACTTGATTAGG
GTGATGGT’I‘CACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTT
AATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTATAAGGGAT
TTTGGGGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAATTAATTCTGTGGAA
TGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGGCAGGCAGAAGTATGCAAAGCATGCATCTCAAT
TAGTCAGCAACCAGGTGTGGAAAGTCCCGAGGCTCCCGAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTA
GTCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGC
CCCATGGCTGACTAATTTTTTTTATITATGCAGAGGCCGAGGCCGCCTCTGCCTCTGAGCTATTCCAGAAGTAG
TGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTCCCGGGAGC’ITGTATATCCATTTTCGGATCTGA
CGTGATGAAAAAGCCTGAACTCACCGCGACGTCTGTCGAGAAGT’ITCTGATCGAAAAGTTCGACAGCG
TCTCCGACCTGATGCAGCTCTCGGAGGGCGAAGAATCTCGTGCTTTCAGC!TTCGATGTAGGAGGGCGTGGATAT
CGGGTAAATAGCTGCGCCGATGGTTTCTACAAAGATCGTTATGTTTATCGGCACTTI‘GCATCGGCCGC
GCTCCCGA’I‘TCCGGAAGTGCTTGACA’ITGGGGAATTCAGCGAGAGCCTGACCTATTGCATCTCCCGCCGTGCAC
AGGGTGTCACGTTGCAAGACCTGCCTGAAACCGAACTGCCCGCTGTTCTGCAGCCGGTCGCGGAGGCCATGGAT
GCGATCGCTGCGGCCGATCTTAGCCAGACGAGCGGGTTCGGCCCATTCGGACCGCAAGGAATCGGTCAATACAC
TACATGGCGTGATTTCATATGCGCGATTGCTGATCCCCATGTGTATCACTGGCAAACTGTGATGGACGACACCG
TCAGTGCGTCCGTCGCGCAGGCTCTCGATGAGCTGATGCTTTGGGCCGAGGACTGCCCCGAAGTCCGGCACCTC
GTGCACGCGGATTTCGGCTCCAACAATGTCCTGACGGACAATGGCCGCATAACAGCGGTCATTGACTGGAGCGA
GGCGATGTTCGGGGATTCCCAATACGAGGTCGCCAACATCTTCTTCTGGAGGCCGTGGTTGGCTTGTATGGAGC
AGCAGACGCGCTACTTCGAGCGGAGGCATCCGGAGCTTGCAGGATCGCCGCGGCTCCGGGCGTATATGCTCCGC
ATTGGTCTTGACCAACTCTATCAGAGCTTGGTTGACGGCAATTTCGATGATGCAGCTTGGGCGCAGGGTCGATG
CGACGCAATCGTCCGATCCGGAGCCGGGACTGTCGGGCGTACACAAATCGCCCGCAGAAGCGCGGCCGTCTGGA
CCGATGGCTGTGTAGAAGTACTCGCCGATAGTGGAAACCGACGCCCCAGCACTCGTCCGAGGGCAAAGGAATAG
CACGTGCTACGAGAT’I‘TCGATTCCACCGCCGCCTTCTATGAAAGGTTGGGCTTCGGAATCGTTTTCCGGGACGC
CGGCTGGATGATCCTCCAGCGCGGGGATCTCATGCTGGAGTTCTTCGCCCACCCCAACTTGTTTATTGCAGCTT
ATAATGGTTACAAATAAAGCAATAGCATCACAAAT’I‘TCACAAATAAAGCATTTTTTTCACTGCATTCTAGTTGT
GGTTTGTCCAAACTCATCAATGTATCTTATCATGTCTGTATACCGTCGACCTCTAGCTAGAGC'ITGGCGTAATC
ATGGTCATAGCTGTTTCCTGTGTGAAATTGT’I‘ATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAA
AGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAG
TCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTA’I‘TGGGCG
CTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAA
AGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAG
GCGAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA
TCGAGGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCC
TCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTC’I‘CCCTTCGGGAAGCGTGGCG
CTTTCTCAATGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGA
ACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACT
TATCGCCACTGGCAGCAGCCACTGGTAACAGGATIAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTG
AAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTAITTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTT
CGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGC
AGCAGAITACGCGCAGAAAAAAAGGAICTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGG
AACGAAAACTCACGTTAAGGGAETTTGGTCAIGAGATTATCAAAAAGGAECTTCACCTAGATCCTTTTAAATTA
AAAATGAAGTTTLAAATCAATCTAAAGTATAIATGAGTAAACTTGGTCTGACAGTTACCAATGCTTAATCAGTG
AGGCACCTATCTCAGCGATCTGTCTATTTCGTTCATCCATAGTTGCCTGACTCCCCGTCGTGTAGATAACTACG
ATACGGGAGGGCTTACCATCTGGCCCCAGTGCTGCAAIGATACCGCGAGAQCCACGCTCACCGGCTCCAGATTT
AATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGT
CTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGCCATTGCT
ACAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGT
ATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGG
CCGCAGTGTTATCACTCATGGTTATGGGAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATGCTTT
TCTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAAIAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGC
GTCAATACGGGATAAIACCGCGCCACATAGCAGAACTTIAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGC
GAAAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCA
GCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAAIGCCGCAAAAAAGGGAATAAG
GGCGACACGGAAAIGTTGAATACTCATACTCTTCCTTTTTCAATATTATTGAAGCATTTATCAGGGTTATTGTC
TCAIGAGCGGATACATATTTGAATGTAITIAGAAAAATAAACAAAIAGGGGTTCCGCGCACAITTCCCCGAAAA
GTGCCACCTGACGTC
The complete DNA sequence of pCDNA3.l~hyg1*o (+)~IgL chain expression vector for the
tagged hBUlZ anti—human CD19 antibody will be as follows: '
for hBUl2 with C~
SEQ ID NO 14 (coding region ofhuman IgG1 VL~CL kappa light chain
and Hindlll
terminal LPETG sortase tag, 6XHls tag, Myo tag, and a strepll tag underlined,
and Notl .ng sites ):
GACGGATCGGGAGATCTCCCGATCCCCTATGGTCGACICTCAGTACAATCTGCTCTGATGCCGCATAG’ITAAGC
CTGCTCCCTGCTTGTGTGTTGGAGGTCGCTGAGTAGTGCGCGAGCAAAATTTAAGCTACAACAAGGCA
AGGCTTGACCGACAATTGCATGAAGAATCTGCTTAGGGTTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGCCA
GATATACGCGTTGACATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGGGTCATTAG’ITCATAGCCCA
TATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCAACGACCCCCGCCCATT
GAOGTCAATAATGACGTATGT‘I‘CCCATAGTAACGCCAATAGGGAC’ITTCCATTGACGTCAATGGGTGGAC’I‘ATT
TACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGCCAAG—TACGCCCCCTATTGACGTCAATGAC
TGGCCCGCCTGGCATTATGCCCAGTACATGACCTTATGGGACTTTCCTACT’I'GGCAGTACATCTACGT
ATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACATCAATGGGCGTGGATAGCGG’ITTGACTCAC
GGGGATTTCCAAGTCTCCACCCCATTGACGTCAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCA
AAATGTCGTAACAACTCCGCCCCA'ITGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAG
AGCTCTCTGGCTAACTAGAGAACCCACTGCTTACTGGC'ITATCGAAATTAATACGACTCACTATAGGGAGACCC
AAGCTGGCTAGCGTTTAAACTTEEEWCATGAAGTTGCCTGTTAGGCTGTTGGTGCTGATGTTCTGGATTCC
TGCTTCCAGCAGTGAAATTGTTCFfCAEJ—CCAGTCTCCAGCAACCCTGTCTCTCTCTCCAGGGGAAAGGGCTACCC
TGAGCTGCAGTGCCAGC’I‘CAAGTGTAAGTTACATGCACTGGTACCAGCAGAAGCCAGGGCAGGCTCCCAGACTC
CTGATTTATGACACATCCAAACTGGCTTCTGGTATTCCAGCAAGG’ITCAGTGGCAGTGGGTCTGGAACAGATTT
TACACTCACAATCAGCAGCCTGGAGCGAGAGGATGTTGCTGTCTATTACTGTTTTCAGGGGAGTGTATACCCAT
TCACTTITGGCCAAGGGACAAAG’ITGGAAATCAAAAGAACTGTGGCTGCACCATCTGTCTI‘CATCTTCCCGCCA
TCTGATGAGCAGTI‘GAAATCTGGAACTGCCTCTGTTGTGTGCC’I‘GCTGAATAACTTCTATCCCAGAGAGGCCAA
AGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGG
ACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCTGC
GAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTGTCTGCCCGAGACCGG
CCACCACCACCACCACCACGGCGAGCAGAAGCTGATCAGCGAGGAGGACCTGGGCTGGAGCCACCCCCAGTTCG
AGAAGTAWWTCGAGTCTAGAGGGccCGTTTAAACcceoTeATCAGCCTCeACIGTGcCTTCTAGTTG
CCAGCCATCTGTTGTTTGCCCCTCCCCCGTGCCT’I‘CCTTGACCCTGGAAGGTGCCACTCCCACTG’I‘CCTTTCCT
AATAAAATGAGGAAATTGCATCGCATTGTCTGAGTAGGTGTCATI‘CTATTCTGGGGGGTGGGGTGGGGCAGGAC
AGCAAGGGGGAGGATTGGGAAGACAATAGCAGGCATGCTGGGGATGCGGTGGGCTCTATGGCTTCTGAGGCGGA
AAGAACCAGCTGGGGCTCTAGGGGGTATCCCCACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGG
TTACGCGCAGCGTGACCGCTACAC’I‘TGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTC
GCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGCATCCCTTTAGGGTTCCGA'ITTAGTGCTTTACG
GCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTC
GCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATC
GATTTAACA
TCGGTCTATTCTTTTGATTTATAAGGGATT’ITGGGGATTTCGGCCTATTGGTTAAAAAATGAGCT
AAAAT’ITAACGCGAATTAATTCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCC
GCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGC
AGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCCCCT
AACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGCTGACTAATTTTTTTTATTI‘ATGCAGAGGCCGAGGCCG
CCTCTGCCTCTGAGCTATTCCAGAAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTCCCG
GTCTGTCGA
GGAGCTTGTATATCCATTTTCGGATCTGATCAGCACGTGATGAAAAAGCCTGAACTCACCGCGAC
GTGCTT
GAAGTI‘TCTGATCGAAAAGTTCGACAGCGTCTCCGACCTGATGCAGCTCTCGGAGGGCGAAGAATCTC
CGATGGTTTCTACAAAGATCGT
.TCAGCTTCGATGTAGGAGGGCGTGGA’I‘A’I'GTCCTGCGGGTAAATAGCTGCGC
TATG'I'I‘TATCGGCACTTTGCATCGGCCGCGCTCCCGA'I'I‘CCGGAAGTGCTTGACATTGGGGAATTCAGCGAGAG
AACCGAACTGCCCGCTG
CCTGACCTATTGCATCTCCCGCCGTGCACAGGGTGTCACGTTGCAAGACCT
TTCTGCAGCCGGTCGCGGAGGCCATGGATGCGATCGCTGCGGCCGATCTTAGCCAGACGAGCGGGTTCGGCCCA
GCGCGATTGCTGATCCCCATGTGTA
TTCGGACCGCAAGGAATCGGTCAATACACTACATGGCGTGATTTCATAT
TCACTGGCAAACTGTGATGGACGACACCGTCAGTGCGTCCGTCGCGCAGGCTCTCGATGAGCTGATGCTTTGGG
CCGAGGACTGCCCCGAAGTCCGGCACCTCGTGCACGCGGATTTCGGCTCCAACAATGTCCTGACGGACAATGGC
CGCATAACAGCGGTCATTGACTGGAGCGAGGCGATGTTCGGGGATI‘CCCAATACGAGGTCGCCAACATCTTCTT
CTGGAGGCCGTGGTTGGCTTGTA’I‘GGAGCAGCAGACGCGCTACTTCGAGCGGAGGCATCCGGAGCTTGCAGGAT
CGCCGCGGCTCCGGGCGTATATGCTCCGCATTGGTCTTGACCAACTCTATCAGAGCTTGGTTGACGGCAA’ITTC
GCAGCT'I‘GGGCGCAGGGTCGA’I‘GCGACGCAATCGTCCGATCCGGAGCCGGGACTGTCGGGCGTACACA
AATCGCCCGCAGAAGCGCGGCCGTCTGGACCGATGGCTGTGTAGAAGTACTCGCCGATAGTGGAAACCGACGCC
CCAGCACTCGTCCGAGGGCAAAGGAATAGCACGTGCTACGAGATTTCGATTCCACCGCCGCCTTCTATGAAAGG
TTGGGCTTCGGAATCGTTTTCCGGGACGCCGGCTGGATGATCCTCCAGCGCGGGGATCTCATGCTGGAGTTCTT
CGCCCACCCCAACTTGTTTATTGCAGCTTATAATGGTTACAAATAAAGCAATAGCATCACAAATI‘TCACAAATA
AAGCATTTTTTTCACTGCATTCTAGTTGTGGTTTGTCCAAACTCATCAATGTATCTTATCATGTCTGTATACCG
GTTATCCGCTCACAAT
TCTAGCTAGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATT
GAGCTAACTCACA’I‘TAA
TCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGT
TTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGC
GCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCG
GCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAA
AGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGG
CTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAG
ATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCT'ITCTCCCTTCGGGAAGCGTGGCGC’ITTCTCAATGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTC
GTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCG
TCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACI‘GGTAACAGGATTAGCAGAGCGA
GGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGT
CACCGC
ATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAAC
GATCTCAAGAAGATCCTTTGA
TGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAG
CATGAGATTATCAAAA
CTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGT
ACTTG
AGGATCTTCACCTAGATCC’ITTTAAA’ITAAAAATGAAGTTTTAAATCAATCTAAAGTATATAT
GTCTGACAGTTACCAATGC’I‘TAATCAGTGAGGCACCTATCTCAGCGATCTGTCTA'I'ITCGTTCATCCATAGTTG
CCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGGGCTTACCATCTGGCCCCAGTGCTGCAATGATACCG
CAGCCGGAAGGGCCGAGCGCAGAAGTGG
CGAGACCCACGCTCACCGGCTCCAGATTTATCAGCAATAAACCAGC
’I‘CCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAG’ITCGCCAGTTA
ATAGTTTGCGCAACG’ITGTTGCCATTGCTACAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCATTC
AGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGG
GCATAATTCTC
GATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAGCACT
CATTCTGAGAATAGTGT
TTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGACTGGTGAGTACTCAACCAAGT
ATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAATACGGGATAATACCGCGCCACATAGCAGAACTTTAAAAGT
GCTCATCATTGGAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGAT
AACCCACTCGTGCACCCAACTGATCTTCAGCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGA.
AGGCAAAATGCCGCAAAAAAGGGAATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATA
TTATTGAAGCATTTATCAGGGTTATTGTCTCATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAACAAA
TAGGGGTTCCGCGCACATTTCCCCGAAAAGTGCCACCTGACGTC
WO 40317
like eg‘
TheSe constructs allow upon transfection into mammalian cells, - but not limited to
the sion of
CEO cells, that are typically used for recombinant antibody sion,
the anti~human CD 19 specific humanized antibody hBUlZ with C~te1minal
additions of a
atboth the IgH and IgL chains.
sortase Atag, a 6XHis tag, a Myc tag, and a strepll tag
Example 2.: Cloning of expression Vectors for monoclonal antibody with C-terminal N~
C~terninal 6xHis and strepll
intein domain of SsP GyrB 11 split~intein With additional
y purification tags
aureus smtase A
Similar to the design of expression cassettes and vectors of Staphylococcus
C~te1minal fusion of N~intein
tagged IgGl heavy and light chains, the coding regions for a
domain of Ssp GyrB 11 split~intein to either the IgH and IgL chain can be designed
follows, in order to gene synthesize the genes by a qualified CRO (e.g. Genscn'pt
away, NJ, USA), with the same elements for the anti~human (WWWgensciipteom,
CD19 antibody as disclosed further above.
The 150 amino acid sequence of the N~intein domain of Ssp GyrB 11 split~intein can be
found in apublication by Appleby et al. (2009), and is as follows:
SEQ ID NO 15 (Naintein domain of Ssp GyrB 11 split~intein):
CFSGDTLVALTDGRSVSFEQLVEEEKQGKQNFCYTIRHDGS IGVEKIINARKTKTNAKVIKVTLDNGES IICTP
RDGSYKCAMDLTLDDSLMPLHRKI STTEDSGHMEAVLNYNHRIVNIEAVSETIDVYDIEVPHTHNFAL
mammalian codon usage will result in
Reverse translation ofthat amino acid ce with
ll split~intein as follows:
the coding sequence for the N-intein domain of Ssp GyrB
SEQ ID NO 16 (endocing sequence for N~intein domain of Ssp GyrB 11 Split~intein)2
TGCTTCAGCGGCGACACCCTGGTGGCCCTGACCGACGGCAGAAGCGTGAGCTTCGAGCAGCTGGTGGAGGAGGA
GAAGGAGGGCAAGCAGAACTTCTGCTACACCATCAGACACGACGGCAGCATCGGCGTGGAGAAGATCATCAACG
CCAGAAAGACCAAGACCAACGCCAAGGTGATCAAGGTGACCCTGGACAACGGCGAGAGCATCATCTGCACCCCC
GACCACAAGTTCATGCTGAGAGACGGCAGCTACAAGTGCGCCATGGACCTGACCCTGGACGACAGCCTGATGCC
CAGAAAGATCAGCACCACCGAGGACAGCGGCCACATGGAGGCCGTGCTGAACTACAACCACAGAATCG
TGAACATCGAGGCCGTGAGCGAGACCATCGACGTGTACGACATCGAGGTGCCCCACACCCACAACTTCGCCCTG
GCCAGC
With this sequence ation at hand, the complete IgGl heavy chain coding region
anti~human CD19 antibody hBUlZ with C—temn‘nal extension, comprising the N~intein
domain of Ssp GyrB 11 split~intein, folloWed by a Gxflis-tag and a strepll tag can be
designed as sed in SEQ ID NO 17 below:
ATGAATTTTGGACTGAGGCTGATTTTCCTGGTGCTGACCCTGAAAGGCGTCCAGTGTCAGGTTCAGCTGCAAGA
GTCTGGCCCTGGGTTGGTTAAGCCCTCCCAGACCCTCAGTCTGACTTGTACTGTGTCTGGGGGTTCAATCAGCA
CTTCTGGTATGGGTGTAGGCTGGATTAGGCAGCACCCAGGGAAGGGTCTGGAGTGGATTGGACACATTTGGTGG
GATGAEGACAAGAGATATAACCCAGCCCTGAAGAGCAGAGTGACAATCTCTGTGGATACCTCCAAGAACCAGTT
TAGCCTCAAGCTGTCCAGTGTGACAGCTGCAGATACTGCTGTCTACTAGTGTGCTAGAATGGAACTTTGGTCCT
TTGACEACTGGGGCCAAGGCACCCTTGTCACAGTCTCCTCAGCTAGCACCAAGGGCCCATCTGTCTTC
CCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCTGCCCTGGGCTGCCTGGTCAAGGACTACTTCCC
TGAACCTGTGACAGTGTCCTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACCTTCCCGGCTGTCCTACAGT
CCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGC
AACGTGAATCACAAGCCCAGCAACACQAAGGTGGACAAGAAAGTTGAGCCCAAATCTTGTGACAAAACTCACAC
ATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACA
CCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAG
.TTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAACAGCAC
GTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGAGTACAAGTGCAAGGTCT
CCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAICTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTG
TACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTA
TCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGC
TGGACTGCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTC
TTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACACAGAAGAGCCTCTCCCTGTCTCCGGGTAA
ATGCTTCAGCGGCGACACCCTGGTGGCCCTGAGCGACGGCAGAAGCGTGAGCTTCGAGCAGCTGGTGGAGGAGG
AGAAGGAGGGCAAGCAGAACTTCTGCTACACCATCAGACACGACGGCAGCATCGGCGTGGAGAAGATCATCAAC
GCCAGAAAGACCAAGACCAACGCCAAGGTGATCAAGGTGACCCTGGACAACGGCGAGAGCATCATCTGCACCCC
CGACCACAAGTTCATGCTGAGAGACGGCAGCTACAAGTGCGCCATGGACCTGAGCCTGGACGACAGCCTGATGC
ACAGAAAGATCAGCACCACCGAGGACAGCGGCCACATGGAGGCCGTGCTGAACTACAACCACAGAATC
GTGAACATCGAGGCCGTGAGCGAGACCATCGACGTGTACGACATCGAGGTGCCCCACACCCACAACTTCGCCCT
GGCCAGCCACCATCACCATCACCATGGCTGGAGCCACCCCCAGTTCGAGAAGTAG
acids of the N—intein domain
This translates to amino acid sequence SEQ ID NO 18 (amino
are shaded):
are underlined, 6xHis tag and l tag
LIFLVETLKGVQCQVQLQESGPGLVKPSQTLSLTCTVSGGSISTSGMGVGWIRQHPGKGLEWIGHIWW
DDDKRXNPALKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARMELWSYYFDYWGQGTLVTVSSASTKGPSVF
PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC
NVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMI SRTPEVTCVVVDVSHEDPEVK
FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI SKAKGQPREPQV
YTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV
FSCSVMHEALHNHYTQKSLSLSPGfiagFSGDTLVALTDGRSVSFEQLVEEEKQGKQNFCYTIRHDGS IGVEKIIN‘
STTEDSGHMEAVLNYNHRI
ARKTKENAKVIKVTLDNGES IICTPDHKFMLRDGSYKCAMDLTLDDSLMPLHRKI
yNIEAVSETIDVYDZZEVPHTHNE‘A : Lass;
anti~human CD 19 antibody
Likewise, a complete IgGl kappa light chain coding region for
hBU12 with ina1 extension, comprising the N—intein domain of Ssp GyrB
11 split~
disclosed in SEQ ID NO
intein, followed by a 6XHis~tag and a snepll tag can be designed as
19 below:
PCT[EP2014/055173
ATGAATTTTGGACTGAGGCTGATTTTCCTGGTGCTGACCCTGAAAGGCGTCCAGTGTGACATTGTGCTGACCCA
ATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGGAGAGGGCCACCATCTCCTGCAAGGCCAGCCAAAGTGTTGATT
TTGATGGTGATAGTTATATGAACTGGTACCAACAGAAACCAGGACAGCCACCCAAAGTCCTCATCTATGCTGCA
TCCAATCTAGAATCTGGGATCCCAGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCA
TCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAAGTAATGAGGATCCGTGGACGTTCGGTGGAG
GCACCAAGCTGGAAATCAAACGTACGGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTG
GGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATGCCAGAGAGGCCAAAGTACAGTGGAAGGT
GGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC
GCACCCTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCATCAG
GGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTGCTTCAGCGGCGACACCCTGGTGGCCCTGAC
CGACGGCAGAAGCGTGAGCTTCGAGCAGCTGGTGGAGGAGGAGAAGCAGGGCAAGCAGAACTTCTGCTACACCA
TCAGACACGACGGCAGCATCGGCGTGGAGAAGATCATCAACGCCAGAAAGACCAAGACCAACGCCAAGGTGATC
AAGGTGACCCTGGACAACGGCGAGAGCATCATCTGCACCCCCGACCACAAGTTCATGCTGAGAGACGGCAGCTA
CAAGTGCGCCATGGACCTGACCCTGGACGACAGCCTGATGCCCCTGCACAGAAAGATCAGCACCACCGAGGACA
GCGGCCACATGGAGGCCGTGCTGAACTACAACCACAGAATCGTGAACATCGAGGCCGTGAGCGAGACCATCGAC
GTGTACGACATCGAGGTGCCCCACACCCACAACTTCGCCCTGGCCAGCCACCATCACCATCACCAIGGCTGGAG
CCACCCCCAGTTCGAGAAGTAG
of the N~intein domain
This translates to amino acid sequence SEQ ID NO 20 (amino acids
are underlined, 6XHlS tag and streplI tag are shaded):
MNFGLRLIFLVLTLKGVQCDIVLTQSPASLAVSLGQRATISCKASQSVDFDGDSYMNWYQQKPGQPPKVLIYAA
SNLEEGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQL
KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ
TKSFNRGECFSGDTLVALTDGRSVSFEQLVEEEKQGKQNFCYTIRHDGS IGVEKIINARKTKTNAKVI
LTLDDSLMPLHRKI STTEDSGHMEAVLNYNHRIVNIEAVSETID
The coding regions for the N~intein modified heavy
and light chains of the uman
17 and 19, respectively, can then be
CD19 specific antibody as sed in SEQ ID NOs
synthesized with flanking restdctlon enzyme sites (e. g. I-Iindlll and Natl) such that they can
be cloned into a standard mammalian expression vector, such as pCDNA3.l-hygro (+)
(Invitrogen), by standard molecular biology methods known in the art.
The complete DNA sequence of pCDNA3.l—hygro (+)~IgH chain expression vector for the
follows:
NHintein tagged hBU12 anti-human CD19 antibody is then as
SEQ ID NO 21 g region of human IgGl VH—CH heavy chain for hBUlZ with C-
terminal N—intein domain of Ssp GyrB Sll split intein, folloWed by 6xHis tag Strepll tag
(underlined), and Hindlll and Notl g sites (shaded)):
GACGGATCGGGAGATCTCCCGATCCCCTATGGTCGACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGC
CAGTATCTGCTCCCTGCTTGTGTGTTGGAGGTCGCTGAGTAGTGCGCGAGCAAAATTTAAGCTACAACAAGGCA
AGGCTTGACCGACAATTGCATGAAGAATCTGCTTAGGGTTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGCCA
GATATACGCGTTGACATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGGGTCAETAGTTCATAGCCCA
TATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCAAGGACCCCCGCCCATT
AATAATGACGTATGTTCCCATAGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGACTATT
TACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGGCAAGTACGCCCCCTATTGACGTCAATGAC
2014/055173
GGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTFATGGGACTTTCCTACTTGGCAGTACATCTACGT
ATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACATCAATGGGCGTGGATAGCGGTTTGACTCAC
TTCCAAGTCTCCACCCCATTGACGTCAATGGGAGTITGTTTTGGCACCAAAATCAACGGGACTTTCCA
AAATGTCGTAACAACTCCGCCCCATTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAG
AGCTCTCTGGCTAACTAGAGAACCCACTGCTTACTGGCTTATCGAAATTAATACGACTCACTATAGGGAGACCC
AAGcmGCTAGCGTTTAAACTTKXEE‘TTCCATGAAHTTGGACTGAGGCTGATTTTCCTGGTGCTGACCCTGAA
AGGCGTCCAGTGTCAGGTTCAGCTGCAAGAGTCTGGCCCTGGGTI‘GGTTAAGCCCTCCCAGACCCTCAGTCTGA
CTTGTACTGTGTCTGGGGGITCAATCAGCACTTCTGGTATGGGTGTAGGCTGGATTAGGCAGCACCCAGGGAAG
GGTCTGGAGTGGATTGGACACA’ITTGGTGGGATGATGACAAGAGATATAACCCAGCCCTGAAGAGCAGAGTGAC
AATCTCTGTGGATACCTCCMGAACCAGWAGCCTCAAGCTGTCCAGTGTGACAGCTGCAGATACTGC’I‘G’I‘CT .
ACTACTGTGCTAGAATGGAACTTTGGTCCTACTATI‘TTGACTACTGGGGCCAAGGCACCCTTGTCACAGTCTCC
TCAGCTAGCACCAAGGGCCCATCTGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCTGC
CCTGGGCTGCCTGGTCAAGGACTACTTCCCTGAACCTGTGACAGTGTCCTGGAACTCAGGCGCCCTGACCAGCG
GCGTGCACACCT’I’CCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCC
AGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGACAAGAAAGT
TGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAG
TCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTG
GACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGAC
AAAGCCGCGGGAGGAGCAGTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGC
GCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCATCTCCAAA
GCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGT
CAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGG
AGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCT’I‘CTTCCTCTACAGCAAGCTCACCGTG
GACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACAC
ACAGAAGAGCCTCTCCCTGTCTCCGGGTAAATGCTTCAGCGGCGACACCCTGGTGGCCCTGACCGACGGCAGAA
GCGTGAGCTTCGAGCAGCTGGTGGAGGAGGAGAAGCAGGGCAAGCAGAACTTCTGCTACACCATCAGACACGAC
GGCAGCATCGGCGTGGAGAAGATCATCAACGCCAGAAAGACCAAGACCAACGCCAAGGTGATCAAGGTGACCCT
GGACAACGGCGAGAGCATCATCTGCACCCCCGACCACAAGTTCATGCTGAGAGACGGCAGCTACAAGTGCGCCA
LGEACCTGACCCTGGACGACAGCCTGATGCCCCTGCACAGAAAGATCAGCACCACCGAGGACAGCGGCCACATG
GAGGCCGTGCTGAACTACAACCACAGAATCGTGAACATCGAGGCCGTGAGCGAGACCATCGACGTGTACGACAT
CGAGGTGCCCCACACCCACAACTTCGCCCTGGCCAGCCACCATCACCATCACCATGGCTGGAGCCACCCCCAGT
TCGAGAAGTAEE?fl???EfiETCGAGTCTAGAGGGCCCGTTTAAACCCGCTGATCAGCCTCGACTGTGCCT’I‘CTAG
CAGCCATCTGTTG’fTTGCCCCTCCCCCGTGCCTTCCTTGACCCTGGAAGGTGCCACTCCCACTGTCCTTT
CCTAATAAAATGAGGAAATTGCATCGCATTGTCTGAGTAGGTGTCATTCTATTCTGGGGGGTGGGGTGGGGCAG
GACAGCAAGGGGGAGGATTGGGAAGACAATAGCAGGCATGCTGGGGATGCGGTGGGCTCTATGGCITCTGAGGC
GGAAAGAACCAGCTGGGGC’I‘CTAGGGGGTATCCCCACGCGCCCTG’I‘AGCGGCGCATTAAGCGCGGCGGGTGTGG
TGG’I‘TACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCC’ITT
CTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGCATCCCTTTAGGG’ITCCGATTTAGTGCTTT
ACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTT
TTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAG’I‘GGACTCTTGTTCCAAACTGGAACAACACTCAACCCT
ATCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGGGGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTA
ACAAAAATTTAACGCGAATTAA’ITCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGG
GAAGTA'I‘GCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCCCCAGCA
AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCC
CCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGCTGACTAATTI'TTTTI‘ATITATGCAGAGGCCGAGG
CCGCCTCTGCCTCTGAGCTATTCCAGAAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTC
CCGGGAGCTTGTATATCCATTTTCGGATCTGATCAGCACGTGATGAAAAAGCCTGAACTCACCGCGACGTCTGT
CGAGAAGTTTCTGATCGAAAAGTTCGACAGCGTCTCCGACCTGATGCAGCTCTCGGAGGGCGAAGAATCTCGTG
CTTTCAGCTTCGATGTAGGAGGGCGTGGATA’I‘GTCCTGCGGGTAAATAGCTGCGCCGATGGTTTCTACAAAGAT
CGTTATGTTTATCGGCACT’ITGCATCGGCCGCGCTCCCGATTCCGGAAGTGCTTGACATTGGGGAATTCAGCGA
GAGCCTGACCTATTGCATCTCCCGCCGTGCACAGGGTGTCACGTTGCAAGACCTGCCTGAAACCGAACTGCCCG
CTGTTCTGCAGCCGGTCGCGGAGGCCATGGATGCGATCGCTGCGGCCGATCTTAGCCAGACGAGCGGGTTCGGC
CCATTCGGACCGCAAGGAATCGGTCAATACACTACATGGCGTGA’ITTCATATGCGCGATTGCTGATCCCCATGT
GTATCACTGGCAAACTGTGATGGACGACACCGTCAGTGCGTCCGTCGCGCAGGCTCTCGATGAGCTGATGCTTI‘
GGGCCGAGGACTGCCCCGAAGTCCGGCACCTCGTGCACGCGGATTTCGGCTCCAACAATGTCCTGACGGACAAT
GGCCGCATAACAGCGGTCATTGACTGGAGCGAGGCGATGTTCGGGGATTCCCAATACGAGGTCGCCAACATCTT
CTTCTGGAGGCCGTGGTTGGCTTGTATGGAGCAGCAGACGCGCTACTTCGAGCGGAGGCATCCGGAGCTTGCAG
GATCGCCGCGGCTCCGGGCGTATATGCTCCGCATTGGTCTTGACCAACTCTATCAGAGCTTGG’I‘TGACGGCAAT
TTCGATGATGCAGCTTGGGCGCAGGG’I‘CGATGCGACGCAATCGTCCGATCCGGAGCCGGGACTGTCGGGCGTAC
ACAAATCGCCCGCAGAAGCGCGGCCGTCTGGACCGATGGCTGTGTAGAAGTACTCGCCGATAGTGGAAACCGAG
GCCCCAGCACTCGTCCGAGGGCAAAGGAATAGCACGTGCTACGAGATTI‘CGATTCCACCGCCGCCTTC'I‘ATGAA
AGGTTGGGCTTCGGAATCGTTTTCCGGGACGCCGGCTGGATGATCCTCCAGCGCGGGGATCTCATGCTGGAGTT
WO 40317
CCACCCCAAC’I‘TGTTTATTGCAGCTTATAATGGTTACAAATAAAGCAATAGCATCACAAATTTCACAA
CATCAATGTATCTTATCATGTCTGTATA
ATAAAGCATTTTTTTCACTGCATTCTAGTTGTGG’ITTGTCCAAACT
CCGTCGACCTCTAGCTAGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGT’I‘ATCCGCTCAC
ACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACAT
CGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCAT’I‘AATGAATCGGCCAA
CGCGCGGGGAGAGGCGG’HTGCGTATTGGGCGCTCTTCCGC’I'TCCTCGCTCACTGACTCGCTGCGCTCGGTCGT
TCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAG
GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGT’I‘GCTGGCGTTTTTCCAT
AGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATA
AAGA'I‘ACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCT’I‘ACCGGATACC
TGTCCGCCI‘TTCTCCCTTCGGGAAGCGTGGCGCTTTCTCAATGCTCACGCTG’I‘AGGTATCTCAGTTCGGTGTAG
GTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTA
GATTAGCAGAG
TCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAG
GACAGTATTT
CGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAG
GGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAG’ITGGTAGCTCTTGATCCGGCAAACAAAC
CGCTGGTAGCGGTGGTTITTTTG’ITTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTT
TGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACG‘ITAAGGGATTTTGGTCATGAGATTATCA
AAAAGGATCTTCACCTAGATCCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAAC
CTGTCTATTTCGTTCATCCATAG
TTGGTCTGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGAT
TTGCCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGGGCTI‘ACCATCTGGCCCCAGTGCTGCAATGATA
GCCGGAAGGGCCGAGCGCAGAAG
CCGCGAGACCCACGCTCACCGGCTCCAGATTTATCAGCAATAAACCAGCCA
TGGTCCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAG
TTAATAGTTI‘GCGCAACGTTGTTGCCATTGCTACAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCA
GCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCT’I‘
CACTGCATAATT
CGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAG
CTCT'I‘ACTGTCATGCCATCCGTAAGATGCTI‘TTCTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAATAG
CAGAAC’I‘TTAAA
TGTATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAATACGGGATAATACCGCGCCACATAG
GCTGT‘I‘GAGATCCAGTTCGA
AGTGCTCATCATTGGAAAACGTTC’ITCGGGGCGAAAACTCTCAAGGATCTTACC
TGTAACCCACTCGTGCACCCAACTGATCT’I‘CAGCATCTTTTACTT‘I'CACCAGCGTTTCTGGGTGAGCAAAAACA
GGAAGGCAAAATGCCGCAAAAAAGGGAATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCT’I‘TTTCA
ATATTATTGAAGCATTTATCAGGGTTATTGTCTCATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAAC
AAATAGGGGTTCCGCGCACATTTCCCCGAAAAGTGCCACCTGACGTC
The complete DNA Sequence of pCDNA3.l~hygro L chain expression vector for the
Ssp GyrB Sll N—intein domain tagged hBUl2 antl~human CD19 antibody will be as
follows:
light chain for hBU12 with C~
SEQ ID NO 22 (coding region of human IgGl VL~CL kappa
tenninal Ssp GyrB Sll N~intein domain, 6xHis tag and a strepfltag underlined, and Hindlll
and Notl cloning sites shaded):
GACGGATCGGGAGATCTCCCGATCCCCTATGGTCGACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGC
CAGTATCTGCTCCCTGCTTGTGTG'I‘TGGAGGTCGCTGAGTAGTGCGCGAGCAAAATTTAAGCTACAACAAGGCA
AGGCTTGACCGACAATTGCATGAAGAATCTGCTTAGGGTTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGCCA
CAATTACGGGGTCATTAGTTCATAGCCCA
GATATACGCGTTGACATTGATTATTGACTAGTTATI‘AATAGTAAT
TATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCAACGACCCCCGCCCATT
GAGGTCAATAATGACGTATGTTCGCATAGTAACGCCAATAGGGACTTI‘CCATTGACGTCAATGGGTGGACTATT
TACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTACGCCCCCTATTGACGTCAATGAC
GGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTATGGGACTTTCCTACTTGGCAGTACATCTACGT
ATTAGTCATCGCTATTACCATGGTGATGCGGTT’ITGGCAGTACATCAATGGGCGTGGATAGCGGTI‘TGACT
GGGGATTTCCAAGTCTCCACCCCATTGACGTCAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCA
AAATGTCGTAACAACTCCGCCCCATTGACGCAAA’I‘GGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAG
AGCTCTCTGGCTAACTAGAGAACCCACTGCTTACTGGCTTATCGAAATTAATACGACTCACTATAGGGAGACCC
AAGCTGGCTAGCGTTTAAACTTWCATGAATTTTGGACTGAGGCTGATTTTCCTGGTGCTGACCCTGAA
AGGCGTCCAGTGTGACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCA
TCTCCTGCAAGGCCAGCCAAAGTGT’I‘GAITTTGATGGTGATAGTTATATGAACTGGTACCAACAGAAACCAGGA
CAGCCACCCAAAGTCCTCATCTATGCTGCATCCAATCTAGAATCTGGGATCCCAGCCAGGTTTAGTGGCAGTGG
GTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAA
GTAATGAGGATCCGTGGACGTTCGGTGGAGGCACCAAGCTGGAAATCAAACGTACGGTGGCTGCACCA’I‘CTGTC
ITCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTA
TCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAG
AGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGCAAAGCAGACTACGAGAAACAC
AAAGTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTG
CTTCAGCGGCGACACCCTGGTGGCCCTGACCGACGGCAGAAGCGTGAGCTTCGAGCAGCTGGTGGAGGAGGAGA
AGCAGGGCAAGCAGAACTICTGCTACACCATCAGACACGACGGCAGCATCGGCGTGGAGAAGATCATCAACGCC
AGAAAGACCAAGACCAACGCCAAGGTGATCAAGGTGACCCTGGACAACGGCGAGAGCATCATCTGCACCCCCGA
CCACAAGTTCATGCTGAGAGACGGCAGCTACAAGTGCGCCATGGACCTGACCCTGGACGACAGCCTGATGCCCC
TGCACAGAAAGATCAGCACCACCGAGGACAGCGGCCACATGGAGGCCGTGCTGAACTACAACCACAGAATCGTG
AACATCGAGGCCG’I‘GAGCGAGACCATCGACGTGTACGACATCGAGGTGCCCCACACCCACAACTTCGCCCTGGC
CCATCACCATCACCATGGCTGGAGCCACCCCCAGTTCGAGAAGTAWfiCTCGAGTCTAGAGGG
CCCGTTTAAACCCGCTGATCAGCCTCGACTGTGCCI'I‘CTAGTTGCCAGCCATCTGTI‘GTTTGCCCCTCCCCCGT
GCCTTCCTTGACCCTGGAAGGTGCCACTCCCACTGTCCTTTCCTAATAAAATGAGGAAATTGCATCGCATTGTC
TGAGTAGGTGTCA’ITCTAT'I‘CTGGGGGGTGGGGTGGGGCAGGACAGCAAGGGGGAGGATTGGGAAGACAATAGC
AGGCATGCTGGGGATGCGGTGGGCTCTATGGCTTCTGAGGCGGAAAGAACCAGCTGGGGCTCTAGGGGGTA’I‘CC
GCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACITGCCA
GCGCCCTAGCGCCCGCTCCITTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCT
CTAAATCGGGGCATCCCTTTAGGGTTCCGATTTAGTGCITTACGGCACCTCGACCCCAAAAAACTTGATTAGGG
TGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTITTTCGCCCT’ITGACGTTGGAGTCCACGTTCTTTA
ATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTT’I‘GATTTATAAGGGATT
TTGGGGATTTCGGCCTATTGG'ITAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAA’I’I‘AATTCTGTGGAAT
GTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGGCAGGCAGAAGTATGCAAAGCATGCATCTCAATT
AGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAG
TCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCA’ITCTCCGCC
CTGACTAATTTTTTI‘TATTTATGCAGAGGCCGAGGCCGCCTCTGCCTCTGAGCTATTCCAGAAGTAGT
GAGGAGGCTTT’ITTGGAGGCCTAGGCTTTTGCAAAAAGCTCCCGGGAGCTTGTATATCCATTITCGGATCTGAT
GTGATGAAAAAGCCTGAACTCACCGCGACGTCTGTCGAGAAGTTTCTGATCGAAAAGTTCGACAGCGT
CTCCGACCTGATGCAGCTCTCGGAGGGCGAAGAA’I‘CTCGTGCTTTCAGCT’I‘CGATGTAGGAGGGCGTGGATATG
TCCTGCGGGTAAATAGCTGCGCCGATGGTITCTACAAAGATCGTTATGTTTATCGGCACTTTGCATCGGCCGCG
C'I‘CCCGATTCCGGAAGTGCTTGACA’ITGGGGAATTCAGCGAGAGCCTGACCTATTGCATCTCCCGCCGTGCACA
GGGTGTCACGTTGCAAGACCTGCCTGAAACCGAACTGCCCGCTGTTCTGCAGCCGGTCGCGGAGGCCATGGATG ,
CGATCGCTGCGGCCGATCTTAGCCAGACGAGCGGGTTCGGCCCATTCGGACCGCAAGGAATCGGTCAATACACT
ACATGGCGTGATTTCATATGCGCGATTGCTGATCCCCATGTGTATCACTGGCAAACTGTGATGGACGACACCGT
CAGTGCG’I‘CCGTCGCGCAGGCTCTCGATGAGCTGATGC’I'I‘TGGGCCGAGGACTGCCCCGAAGTCCGGCACCTCG
CGGATTTCGGCTCCAACAATGTCCTGACGGACAATGGCCGCATAACAGCGGTCATTGACTGGAGCGAG
GCGATGTTCGGGGATTCCCAATACGAGGTCGCCAACATCTTCTTCTGGAGGCCGTGGTTGGCTTGTATGGAGCA
‘ GCAGACGCGCTACTTCGAGCGGAGGCATCCGGAGCTTGCAGGATCGCCGCGGCTCCGGGCGTATATGCTCCGCAITGGTCTTGACCAACTCTATCAGAGCTTGGTTGACGGCAATTTCGATGATGCAGCTTGGGCGCAGGGTCGATGC
GACGCAATCGTCCGATCCGGAGCCGGGACTGTCGGGCGTACACAAATCGCCCGCAGAAGCGCGGCCGTCTGGAC
CGATGGCTGTGTAGAAGTACTCGCCGATAGTGGAAACCGACGCCCCAGCACTCGTCCGAGGGCAAAGGAATAGC
ACGTGCTACGAGAT’ITCGATTCCACCGCCGCCTTCTATGAAAGGTTGGGC’ITCGGAATCGTTTTCCGGGACGCC
GGCTGGATGATCCTCCAGCGCGGGGATCTCATGCTGGAGTTCTTCGCCCACCCCAACTTGTTTATTGCAGCTTA
TTACAAATAAAGCAATAGCATCACAAA’ITTCACAAATAAAGCATITTFITGACTGCATI‘CTAGTTGTG
GTTTGTCCAAACTCATCAATGTATCTTATCATGTCTGTATACCGTCGAGCTCTAGCTAGAGCTTGGCGTAATCA
TGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAA
GTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGT
CGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGOGCGGGGAGAGGCGGTTI‘GCGTATTGGGCGC
TCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAA
GGCGGTAATACGGITATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGG
CCAGGAACCGTAAAAAGGCCGCG’ITGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAAT
CGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCT
CGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGC
TTTCTCAATGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAA
CCCCCCGTTCAGCCCGAGCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT
ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGA
AGTGGTGGCCTAACTACGGCTACACTAGAAGGA‘CAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTC
GGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTITGCAAGCA
GCAGAT’I‘ACGCGCAGAAAAAAAGGA’I‘CTCAAGAAGATCCTT’I‘GATCTTTTCTACGGGGTCTGACGCTCAGTGGA
ACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAAATTAA
AAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAACTTGGTCTGACAGTTACCAATGCTTAATCAGTGA
GGCACCTATCTCAGCGATCTGTCTATTTCGTTCAECCATAGTTGCCTGACTCCCCGTCGTGTAGAEAACTACGA
TACGGGAGGGCTTACCATCTGGCCCCAGTGCTGCAATGATACCGCGAGACCCACGCTCACCGGCTCCAGATTTA
TCAGCAATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGTC
TATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGCCATTGCTA
CAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTT
ACATGATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGC
CGCAGTGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTAGTGTCATGCCATCCGTAAGATGCTTTT
CTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAATAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGCG
TCAATACGGGAIAATACCGCGCCACATAGCAGAACTTTAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGCG
AAAACTCTCAAGGATCTTACCGCTGTTGAGAECCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCAG
TTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGAATAAGG
GCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAAEATTATTGAAGCATTTAECAGGGTTATTGTCT
CATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAACAAATAGGGGTTCCGCGCACATTTCCCCGAAAAG
TGCCACCTGACGTC
21 and 22
These pcDNA3.1~hygTo(+) based expression vectors disclosed in SEQ ID N03
CHO cells, that are
allow upon transfection into mammalian cells, like eg. but not limited to
anti~human CD19
typically used for inant antibody expression, the expression of the
followed by a
specific humanized antibody hBUl2 with inal N~intein domain fused,
6XI-Iis tag and a strepll tag at both the IgH and IgL chains.
Example 3 A enzyme from
: Cloning and expression of recombinant Sortase
Staphylococcus aureus.
The ORF of Sortase A from lococcus aureus is published in Genbank and can be
found under reads is shown as SEQ ID
entry: AF162687.1. The aa~sequence in that record
NO 23 (amino acid ce of sortase A from Staphylococcus aureus):
MKKWTNRLMTIAGVVLILVAAYLFAKPHIDNYLHDKDKDEKIEQYDKNVKEQASKDKKQQAKPQIPKDKSKVAG
YIEIPDADIKEPVYPGPAIPEQLNRGVSFAEENESLDDQNI SIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGN
ETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK
ID NO
The eonesponding nucleotide sequence inthis Genbanlc entry is provided as SEQ
ATGAAAAAATGGACAAATCGATTAATGACAATCGCTGGTGTGGTACTTATCCTAGTGGCAGCATATTTGTTTGC
TAAACCACATATCGATAAETATCTTCACGATAAAGATAAAGATGAAAAGATTGAACAATATGATAAAAATGTAA
AAGAACAGGCGAGTAAAGATAAAAAGCAGCAAGCTAAACCTCAAATTCCGAAAGATAAATCGAAAGTGGCAGGC
TAIATTGAAATTCCAGATGCTGATATTAAAGAACCAGTATATCCAGGACCAGCAACACCTGAACAATTAAATAG
AGGTGTAAGCTTTGCAGAAGAAAAEGAATCACTAGATGATCAAAATAETTCAATTGCAGGACACACTTTCATTG
CGAACTATCAATTTACAAATCTTAAAGCAGCCAAAAAAGGTAGTATGGTGTACTTTAAAGTTGGTAAT
CGTAAGTATAAAATGACAAGTATAAGAGATGTTAAGCCTACAGATGTAGGAGTTCTAGATGAACAAAA
AGGTAAAGATAAACAATTAACATTAATTACTTGTGATGATTACAATGAAAAGACAGGCGTTTGGGAAAAACGTA
AAATCTTTGTAGCTACAGAAGTCAAATAA
active fragment of
Technical information With respect to the expression of an enzymatically
recombinant sortase A in E.coli, comprising amino acids 60~205 with 6xHis tag are
disclosed inreference W02007/108013A2. The coding region for a 6XHis tagged Version of
Staphylococcus s Sortase A (aa60~205) is provided below as SEQ ID NO 25:
ATGCAAGCTAAACCTCAAATTCCGAAAGATAAATCGAAAGTGGCAGGCTATATTGAAATTCCAGATGCTGATAT
TAAAGAACCAGTATATCCAGGACCAGCAACACCTGAACAATTAAA’I‘AGAGGTGTAAGCTTTGCAGAAGAAAATG
AATCACTAGATGATCAAAATA’ITTCAATTGCAGGACACACTTTCATTGACCGTCCGAACTATCAATTTACAAAT
CTTAAAGCAGCCAAAAAAGGTAGTATGGTG‘I‘ACTTTAAAGTTGGTAATGAAACACGTAAGTATAAAATGACAAG
TATAAGAGATGTTAAGCCTACAGATGTAGGAGTTCTAGATGAACAAAAAGGTAAAGATAAACAATTAACATTAA
TTACTTGTGATGATI‘ACAATGAAAAGACAGGCGTTTGGGAAAAACGTAAAATCTI‘TGTAGCTACAGAAGTCAAA
CACCATCACCATCACCATTAA
This translates to amino acid sequence SEQ ID NO 26:
MQAKPQII'KDKSKVAGYIE IPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNI S I AGHTFI DRPNYQFTN
LKAAICKGSMVYFKVGNETRKYKMTS IRDVKPTDVGVLDEQKGKDKQLTL I TCDDYNFKTGVWEKRKIFVATEVK
HHBHHH'
The coding region for the 6xHis tagged sortase A fragment of Staphylococcus aureus, as
provided in SEQ ID NO 25, can be cloned into a standard ial expression vector, like
e.g. pET29 (Novagen), in order to transform E. coli strain BL21(DE3) en) and to
scitase
generate an E. coli clone that can be used for the ial production of recombinant
art. In short, E. coli BL21(DE3) transformed A according to standard s known in the
with pET29 expression plasmids for sortase A can be cultured at 37 °C in LB medium With
IPTG can then be added to a
50 ug/mL kanamycin until until an OD 600 = 8 is reached.
at 30
final concentration of 0.4 mM and protein expression can be induced for three hours
°C. The cells can then be harvested by centrifugation and resuspended in lysis buffer (50
mM Tris pH 8.0, 300 mM NaCl supplemented with 1 mM MgC12, 2 units/mL DNAsel
(NEE), 260 nM aprotinin, 1.2 uM leupeptin, and lmM PMSF). Cells can then be lysed by
Sonication and clarified supernatant can then be purified on Ni~NTA agaIOSe ing
cturer‘s instructions.
ons that are of >90% purity, as judged by GE, can then be conSolidated and
dialyzed against uffered saline (25 mM Tris pH 7 .5, 150 mM NaCl), and the enzyme
concentration can be calculated from the measured A230 using the published extinction
and ca. 20‘
coefficient of 17,420 M“ crn'l.The above—mentioned protocol has been followed
mg of > 90% pure recombinant enzymatically active fragment (of ca. 17 kD) sortaSe A of
Staphylococcus aureus has been produced and the analysis of the recombinant protein by
SDS~PAGE and Western blotting is disclosed in Fig. 7.
Example 4: Expression and purification of sortase tagged or N~intein tagged
recombinant antibodies in CHO cells
a.) CHO cell expression: Expression of recombinant IgG1 antibodies from the expression
transfection using
constructs disclosed under Examples 2 and 3 can be achieved by transient
c. g. comrnercially available CHO expression systems, like the FreeStyle CHO system from
Invitrogen following the ctions ofthe yle CHO .
In brief, about 1 day prior to transfection, CHO cells shall be seeded at 5—6 x105 cells/ml in
FreeStyle CHO medium in shaker~flasks in order to expand them at 120 rpm on an orbital
shaker at 37°C in a humidified incubator at 7.5% CO The following day the
2 atmosphere.
cells can be transfected, when they reach a density of 1.2—1. 5x10 5/1111. Cells then need to be
added to a 125 ml
diluted to 1X10 5 cells/ml. 30 ml of such a cell suspension then needs to be
added to 600ul
shake flask and 40 ug of 1:1 mixed IgH and IgL expression plasmid DNA is
OptiPro SF—medium (Invitrogen). At the same time, 40ul of FreeStyle MAX ection
both samples need to be gently
reagent needs to be added to 600u1 Optil’ro SF~medium, and
mixed, and incubated for 10 min at room temperature to allow DNA~transfection reagent
to the 125
complexes to form. Then the DNA—transfection t mix can be added slowly
ml CHO cell culture from above and the transfected cells are then grown for up to 6 days at
at 7.5% CO
120 rpm on an orbital shaker at 37°C in ahunn'dified incubator 2 atmosphere.
fter, cell culture supernatant can be collected and analyzed for antibody expression
titer by appropriate methods known in the art , Lurninex, etc).
b.) Protein A purification: Protein A purification of recombinant antibodies fiom the CH0
cell supernatant can be performed with commercially available protein A cse columns
o Fisher, Pierce) according to instructions from the manufacturer.
A column of appropriate size
In brief, cleared cell culture supernatant is run over a protein
and capacity equilibrated with PBS. al medium is washed with PBS and eventually
bound IgG can be eluted with low pH buffer, like 0.1 M citric acid—NaOH, pH 3.0. Eluted
l, pH7.4. Combined
IgG should be neutralized immediately with l/lOth volume of 1M
4°C.
fractions ning IgG can then be dializcd against PBS over night at
2014/055173
The protocols provided in Example 4 provide the skilled perSOn in the art with the
antibodies from the
instruction to produce sufficient quantities of purified, recombinant
constiucts disclosed in Examples 1 and2.
MJVIAE
Example 5: Generation of site~specifically C~terminally toxic payload
conjugated monoclonal antibodies by sortase and split~intein mediated
transp eptidation
and a 6 amino acid
Monomethyl tin A toxin d to a 5 amino acid glycine stretch
SSp GyrB Sll C~int split intein peptide according to the formulas ed below, can
custom ordered from qualified chemistry CROS.
Formula 1: 5~glycine modified MlVLAE With VCPAB linker
Me =methyl (~CH5) group
G = glycine amino acid residue
WWHasaceest
Formula 2 With 6 amino acid Caintein domain
: MlWAE With VCPAB linker, modified
GVFVEN and 6 amino acid SAGSGK in peptide
Me = methyl (CHE) group
stretch
GVFVHNSAGSGK = Gly~Val~Phe~Val—His~Asn~Ser~Ala~Gly~Ser~Gly-Lys
a.) Toxic MlVlAE payload conjugation of LPETG eA motif tagged recombinant IgG
antibodies
soitase A
Conjugation of 5 glycine amino acid modified MMAE toxic payload to LPETG
tagged IgGl antibody (that can be produced by following Examples 1 and 4) can be
achieved by mixing appropriate ratios of LPETG tagged IgGl antibody with the glycine—
modified MMAE toxin disclosed in Formula 1 (e,g, at 1:1 ratio and 50 uM concentration)
and with inant Soitase A ction described in Example 3) (eg. at 5 uM
concentration), and using physiologic tion buffer, like e. g. ; 5 mM Tris/Cl, 15 mM
NaCl, 6 mM CaClZ, pH 8.0, and incubating at 37°C to 40°C for aminimum of 2 hours.
the 6xHis tag
Efficiency of the conjugation can be monitored by analyzing the absence of
and/or the strepII tag after stopping the reaction, e‘ g. by western~blot is or ELISA with
anti~His~tag and/or anti strepll tag antibodies.
Completely conjugated product can be enriched by Niclcel—NTA columns, or streptaotin
column binding, which bind to the 6xHis tag or l tag, respectively, which can only
present in incompletely reacted IgGl substrate Final IgG~payload conjugate can eventually
be purified using protein A purification as described above.
b.) Toxic WAE payload conjugation of 88p GyrB Sll N—intein tagged recombinant IgG
antibodies
Conjugation of Ssp GyrB Sll C~intein amino acid d MAE toxic payload to N~
intein tagged IgGl antibody (that can be produced by following Examples 2 and 4) can be
achieved by mixing appropriate ratios of N~intein tagged IgGl dy with the CHintein
amino acid—modified leAE toxin disclosed inFormula 2 (cg. at 1:10 or 1:25 ratio at 5 uM
concentration of the IgG antibody) using physiologic incubation buffer, like e.g.,' 20 mM
Tris/C1, 250 mM NaCi, 1 mM EDTA, pH 8.5, and incubating at room temperature or
37°C aminimum of4 hours.
of the 6xHis tag
Efficiency of the conjugation can be monitored by analyzing the absence
and/or the strepil tag after stopping the reaction, e.g. by western~blot is or ELISA with
is~tag and/or anti strepll tag antibodies.
W0 40317
Completely conjugated product can be enriched by Nickel—NTA columns, or streptactin
Which can only be
column binding, which bind to the 6XHis tag or strepll tag, respectively,
present in incompletely reacted IgGl substrate. Final IgG~payload conjugate can eventually
be d using protein A purification as described above.
In summary, the Examples 1~5 disalosed above allow a person skilled in the art to ce
the invention of enzymatically conjugating a toxic payload site~speeifically to the 0
terminus either using sortase A mediated or split~intein mediated transpeptidation.
Example 6: Production of Trastuzumab With C~terminal GS (glycine—serine) linkerj
LPETG Sortase motif and additional 6X~His and Strep II y purification tags
either heavy or light chain
Antibody expression constmcts encoding monoclonal antibody Trastuzumab (Tras) heavy
and light chains, either untagged (SEQ in not: 31 e 34) or C~terminally tagged with GS
ID NOs: 35 ~ (glycinewerine) linker, LPETG Sortase tag, 6XHis tag, and Strep II tag (SEQ
38) were generated ially as described inExample 1, Using these expression constructs,
C—GS~LHS and Tras~LC~GS~LHS (HC=heavy chain, LC=1ight chain, GS=glycine~
serine, LHS=LPETG~tag+6xlfls~tag+sirepll~tag) were produced in CHO cells by co~
is a Trastuzumab
transfection of the corresponding expression constructs Tras~HC—GS~LHS
light chain (SEQ ID NOS: 35 ~ 36), and
variant With a heavy chain C~
an unmodified
terminally tagged with GS (glycine~serine) linker, LPETG Sortase motif, 6XHis—tag, and
strepll~tag (SEQ ID NOs: 33 ~ 34). Tras~LC~GS~LHS is a Trastuzumab t with an
with
unmodified heavy chain (SEQ ID NOs: 31 ~ 32), and a light chain C—terminally tagged
GS linker, LPETG Scitase motif, 6xHis~tag, and strepll~tag (SEQ ID'NOs: 37 ~ 38). CHO
transfection and affinity pmification of dies
cell by nA—sepharose
chromatography was done essentially as described in Example 4.
chain of Trastuzumab
Example 7: Sortase A—mediated ation of heavy or light
With odified DMI toxin
Conjugation reactions containing Glys~modified DMl toxin (ordered from Concortis, San
Diego, CA, US, structure see Fig. 14 a.) and a 171d) recombinant sortase A fragment from
Staphylococcus aureus (see Example 3) Were d out with 10.5mg of each monoclonal
antibody (mAb) (see Example 6) in 1x Sortase buffer (25mM Tris—HCI, pH8.2,' lSOmM
NaCl; 7.5mM CaCl2), as shown in Table II, below. The Tras~HC~GS~LHS ation
reaction was ted at 25°C for 211; the C~GS—LHS conjugation reaction was
incubated at 25°C for 18h, Each reaction mixture Was then passed over a Strep-Tactin®
Sepharose columns (IBA Life—Sciences, gen, Germany). For this, 1ml of Strep~Tactin
e was packed under gravity into a fritted column and equilibratcd with 2 column
Volumes of equilibration buffer (100 mM Tris~HCL pH 8.0; 150 mM NaCl; lmM EDTA).
Each conjugation e was passed twice down the same column using y flow (to
increase residence tune on the resin) The resin was Washed with an additional column
volume of equilibration buffer to maximize conjugate yield and the pool then applied
immediately to column. For this, a lml Protein A HiTrap column was
a protein A
equilibrated with 10 column volumes of buffer (25mM sodium phosphate pH 7.5). Each
conjugation reaction was then applied to an equilibrated column and the column washed
with eluted with 5 column
a further 5 column volumes of buffer. Bound conjugate was
volumes of elution bufier (0.1M succinic acid, pH 2.8) with 1 column volume fractions
collected (into tubes containing 25% V/v M Tris Base to neutralise the acid) and analySed
for n content. n containing fiactions were pooled and formulated by G25 column
chromatography. For this, NAP 25 columns of an appropriate size for each scale of
manufacture were used to formulate the conjugates for long term storage. The columns were
equilibrated, loaded and eluted with lOmM Sodium Succinate pH 5.0, lOOmg/mL Trehalose,
0.1% % w/v Polysorbate 20 (Formulation Buffer for Kadcyla® (T~DM1), marketed by
Roche/Genentech) according to the manufacturer’s instructions.
The Tras—HGGS—IHS and Tras~LC~GS~LHS DMl gate yields Were, respectively,
Protein A and
8.0mg ) and 59mg (56.2%). The major process lOSSes occurred during
G25 purification, most probably as a result of peak cutting to ensure maximal concentration
of the product for each subsequent step or storage.
Reaction component HC LC Final
concentration
Tras—HCGS—LHS (5.3mg/ml) 1981u1 ~ SuM
LTras—LC—GS~LHS (5.5mg/ml) — 191m SuM
H20 l 7775.25u1 7714M a
Glys~DMl (ImM) l 140mm l400u1 IOOuM
Sortase A (0.85mg/Inl = ca,
43.75n1 175m 0.156/O.625uM
50W)
5X Sortase buffer* 2800ul 2800u1 195 __|
and Tras~LC~GS~LHS:
Table 2: Conjugation conditions for Tras—HC»GS~LHS
and was
The drug loading was assessed by Hydrophobic Interaction Chromatography (HIC),
at 0.8mL/min with
performed on a TOSOH Butyl~NPR 4,6rnm X 3.50131, 2.5 um column run
H LSM mapzso 4, ZSmM NaPi, pH=6.95+0.05
a 12 minute linear gradient between A
B IPA. The HIC profiles revealed that for both,
~ 75% ZSmM NaPi, pH=6.95+0.05, 25%
Tras~HC~GS~LHS and Tras—LC~GS~LHS, there was no detectable unconjugated mAb left,
and a major fraction of each mAb was loaded with 2 drugs (see Figure 8).
Trastuzumab~DMl
Example 8 :In vitro toxicity assay with sortase A - mediated
conjugates
Cytotoxieity of DMl~sortaseA~conjugated Tras-HC~GS~LHS and DMl~sortaseA~oonjugated
Tras—LOGS—LHS was igated and compared to Kadcyla® (Roche/Genentech) using
SKBR3 cells, a human breast cancer cell line oyerexpressing the cognate antigen of
trastuzurnab (Tras) HER—Z/neu, and T47D-5R cells, a breast cancer cell line naturally
expressing low levels of HER—Z/neu, engineered to be devoid of cell surface HER~2/neu
(Graus~Porta et a1. (1995)). Cells were plated on 96 well plates in IOOuI complete DMEM
carefully remOVed from
(100 00 cells per well). After one day incubation, dium was
each well and replaced by SOul of 35—fold serial dilutions of each ADC in complete
0.25ng/ml. Each dilution
DMEM, resulting in ADC concentrations ranging from 2CAg/ncl to
additional days incubation
duplicates cates. After 3 at 37 0C in a
was done in or
humidified tor at 5% CO were removed from the incubator
2 here, plates
IOOuI ter—Glo®
equilibrated to room temperature. After approximately 30 s,
added to each Well and, after shaking
scent Solution ga, Cat.No G7570) was
min incubation without shaking,
the plates at 450mm for 5 min followed by a
time of 1 second
luminescence was measured on a Tecan Infinity F200 with an integration
SKBRB
ADCs were highly cytotoxic for the HER-2mm overexpressing
per well. All three
R breast cancer cell line
breast cancer cell line, but not for the HER—CZ/neu—negative
‘ PCT/EPZOl4/055173
cell line SKBR3 were:
(see Fig. 9). The BCso Values for Her»2/neu positiVe breast cancer
32.4ng/1nl;‘ DM1~conjugated C~GS~LHS, 45.6ng/ml; Tras—LC—GS~LHS,
Kadcyla®,
cell killing
51.4ng/ml, and thus are within similar range of potency in the in vitro tumor
with {the Her—2/neu
experiment. Conversely, no specific cellular toxicity was detectable
negative breast the functional
cancer cell line T47D~5R, demonstrating equivalence
ally conjugated ADC,
. sortaseA, enzymatically conjugated ADC Versus traditional,
toxin (DMl)
When the comparison entails the same targeting antibody and the same (Fig. 9),
ratio of 1.80
However, it that the lower drug~to antibody ca. (deducted fiom
intergration of the DARl and DAR2 peaks in Fig. 8) for the Tras—HC~GS~LHS and Tras~
LC~GS~LHS Sortase A~conjugated ADCs, as compared to the DAR of ca. 3—4, reported for
inthe in wire
Kadcyla® does not translate into aproportionally different cellular cytotoxicity
(Fig. 9). This cted finding may be the result of a more tumor cell killing assays
A in comparison to
defined and site~specific toxin~antibody conjugation mediated by e
the less defined, stochastically, chemically conjugated Kadcyla®.
Example 9: Optimization of synchronizetion of sortaseA mediated antibody heavy
chain and light chain payload conjugation by variation of peptide—spacer length
inserted between C~tern1inal end of antibody heavy chain and light chain and the
sortaseA recognition motif
the C~terminus of antibody heavy
The influence ide~spacer length positioned n
motif was investigated. For this, antibody
or light chain and LPETG sortase A recognition
heavy chain and light chain expression constructs encoding ic CD30~specific mAb
A010 heavy and light chains (HC sequence derived from US 2008213289Al, Seql, LC
Seq9), C—terminally modified with sequences
sequence derived from US 2008213289A1,
comprising or not comprising a 2 amino acid GS (glycine~serine) spacer, and comprising a
ID 'NOs: 39
LPETG sortaseA recognition motif, and a II purification tag (SEQ ~ 46),
have been cloned essentially according to instructions disclosed in Example 1. Using these
mAbs AclO~HC~GS~LHS/LC~GS~LHS and AclO~HC~LS/LOLS
expression constructs,
were produced in CHO cells by nsfection of the corresponding plasmids. AclO~HC~
modified
GS—LHS/LC~GS~LHS at the C~
is an A0 10 t with heavy and light chains
6XHis tag,
termini of each HC and LC with a GS peptide , a LPETG SoitaseA motif, a
and a strep~II tag (SEQ ID NOsz39 — 42; Table 3). AciO—HCLS/LC—LS
is an AclO variant
LPETG Soltase motif and strep~
with heavy and light chains modified at the C—termini with
II tag Without the 2~peptide GS linker (SEQ ID NOs: 43 ~ 46; Table 3). CHO cell
transfection and affinity purification of dies by protein A~sepharose chromatography
Was done essentially as described in Example 4.
To investigate ncy of conjugation, Serial dilutions of Sortase A Were used to ate
penta—glycinemodified FITC (Glys—FITC, see Formula 3 below).
Formula 3 : penta—glycine d FITC (GlyS—FITC)
- G = glycine residue
For this, Glys~FITC was sortaseA conjugated to two A010 variants in lx SortaSe buffer
(ZSmM Tris—HCl, pH8.2; lSOmM NaCl; 7.SmM CaClZ), as shown in Table 4. After 4h at
42°C, on products were analyzed by denaturing, reducing SDS~PAGE gel
electrophoresis, and FITC was visualized by placing the gels on a UV box (Fig. 10).
of the presence
Conjugation to the heavy chain was found to be highly efficient irrespective
and LPETG Sortase ition
absence of the GS~linker betWeen heavy chain C~te1minus
chain was significantly less
motif Unexpectedly, sortaseA mediated conjugation to the light
Furthermore, it was
efficient in comparison to sortaseA mediated heavy chain conjugation.
surprisingly found that coupling efficiency was ically affected by the presence
(glycine-scrim) the C—terminus of
absence of the 2 peptide GS spacer positioned between
and the LPETG sortaseA recognition motif. Whereas in the
the dy light chains
to the light chain took place with about 5—10): lOWer
presence of the GS~linken conjugation
efficiency than to the heavy Chaim it was about 50—100); less efficient in the absence of a
linker. Therefore, it was concluded that increasing the peptide spacer length betWeen the
further improve conjugation
light chain and the LPETG Sortase recognition motif might
efficiency.
between light chain
Therefore, the influence of increasing the length of the e spacer
and LPETG Sortase A recognition motif on conjugation efficacy was investigated next.
Expression constructs encoding mAb AclO light chains, C~terminally tagged with LPETG
2 to 5 amino acid linker (SEQ
Sortase recognition motif and strep—II purification tag, with a
in e 1. Using these
ID N03: 47 as deScribed
~ 54), were generated essentially
AclO~HC~LS/LC~GGS~LS, AclO—
expression constructs, mAbs AclO—HOLS/LC—GSLS,
HC—LS/LC—GGGS~LS and AclO-HC~LS/LC~GGGGS~LS Were produced in CHO cells by
cowtransfection of the corresponding expression constructs. In each of these antibodies, the
motif and a strep—
heavy chain is inally modified with an LPETG Sortase recognition
modified
H purification tag (SEQ ID NOS: 43 ~ 44; Table 3). The light chain is ninally
with an LPETG e tag and strepdl tag containing either a GS, GGS, GGGS,
or a
motif CHO
GGGGS peptide spacer (SEQ ID NOS: 47 ~ 54; Table 3) in ficnt of the LPETG
cell transfection and affinity purification of antibodies by protein A~sepharose
chromatography was done essentially as described in Example 4.
of Sortase A were uSed to conjugate
To igate conjugation efficiency, serial dilutions
different AclO
penta~glycine~rnodified FITC (Glys~FITC, see Formula 3, above) to the four
lSOmM NaCl; 7.SmM CaClZ),
mAb variants in 1x Sortase bufier (ZSmM Tris~HCl, 131-182;
as shown in Table 5. After 4h
at 42°C, reaction products Were analyzed by denaturing,
the gels on a
reducing SDS~PAGE gel electrophoresis, and FITC was visualized by placing
chain was equally efficient in all
UVbox (Figure 11). As expected, conjugation to the heavy
the light chain was ed significantly
four antibody variants In contrast, conjugation to
by increasing e—spacer length. Significantly, with the longest peptide—spacer analyzed
chain conjugation efficiency was y efficient in comparison to
), light
conjugation of the heavy chain, thereby allowing synchronous conjugation of heavy and
chains of an antibody C—terrninally modified at both heavy and light chain, It is
light
concluded that this antibody format will facilitate Sortase iated production of
homogeneous ADCs loaded with 4 dlugs per antibody (DAR4)
WO 40317
.. Heavy Chain ' Light Chain
Antlbody SEQ ID NOS
‘ modification modification
AclOnHC~GS~ GS~LPETG~G~ GS~LPETG~G~
LHS/LC~GS~ HHHEIHILG— 39,40 . IIEIHHHII~G~
LHS WSHPQFEK WSHPQFEK
' AGIO~HC~ LPETG~G~ LPETG—G—
43 44
LS/LOLS WSHPQFEK WSHPQFEK 45, 46
AclO-HO LPETG—G~ GSMLPETG—(i
43’ 44 47 48
LS/LC—GSJJS WSI-IPQFEK WSHPQFEK
AolO~HC~ LPETG~G~ ,
43 44 gflS‘LPETG‘
GSuLS WSHPQFEK 49, 50
WSHPQFEK
__1_
AclO~HC~ GGGS~LPETG~
LS/LC~GGGS~ TWPSEPCZSEK 43, 44 on 51, 52
LS WSHI’QFEK
A010~HC~ GGGGS~
LS/LC- gggégfili 43, 44 LPETG~G~ 53, 54
LS WSHPQFEK _J
Table 3: ina11y modified mono clonal dy AclO variants produced
Reaction component 1~8 9-16 Final concentration I
AclO-HC-GS~1HS/LC—GS~IHS (8.75mg/ml : 10 ~ 59M
ZSnM) i
C~LS/LC—LS (3.75mg/ml : ESHM) ~ 10 SnM
H20 20 l 20 —
‘ G1y5~FITC (1mm 5 l 5 100m
‘ SortaseA (2X selial dil. of ca. 50nM) 5 l 5 5 9 0.039pM
EX SOl‘tase buffer 10 t 10 1X
and Ac10~
Table 4: Conjugation conditions for InAbs AclO~HCnGS—LHSILC~GS~LHS
HC~LS/LC~LS
Reaction component 1~7 I 8~l4 15—21 22428 i Final conc.
AclO—HC-LS/LC-GS~LS
‘ "
" SHM
(3.75mg/n11225nM)
C—LS/LC—GGS~LS T
_ # SnM
(3.75mg/ml=25nM)
AciO—HGLS/LOGGGS—LS T_
_ _ 10 5 M”
(3.75mg/ml=25nM) _
AclO~HC~LS/LC—GGGGS~LS I _ '10 5 M”
i (3.75mg/ml=25nM)
H20 —i 20 20 20 2o _
Glyg—FITC (lmM) 5
‘ 5 5 5 lOOnM
i 5 l 5 1
Scrtase A (2x selial dil. of ca. ZSnM) 5 5 132590039”
5X Sortase buffer 10 j 10__] 10 10 1x J
Table 5: ation conditions for mAbs AclO~HC~LS/LC~GS—LS, AclO—HOLS/LG
GGS~LS, C~LSfLCwGGGS-LS and AclO~HC~LSlLC~GGGGS~LS.
Example 10: Generation of homogeneous ADC by strepll~tag affinity purification
Sortase A mediated conjugation with G1ys~labeled -MMAE (see Formula 1,
Example 5) was performed with anti~CD30 antibody A010 modified at the C~te1mini of
either the heavy chains, or the light chains with sequences comprising an LPETG sortase A
motif and a strepllw affinity ation tag as provided in Table 6 below:
. Heavy Chain Light Chain
dy SEQ ID NOS SEQ ID N05
modificaticn modification
C~LS LPETG—G—
none
Ac~10~LC WSHPQFEK 43,44 29, 30
AclO~HC GS~LPETG~G—
Ac10~LC—GS— none 27, 28 HHHHHH~G~ 41,42
LHS WSHPQFEK
Table 6: C~terminally modified antibody AclO With either BC or LC modification
4 have
The expression vectors encoding the AclO heavy or light chain sequences of Table
been constructed essentially as disclosed in Example 1. CHO cell transfection and affinity
purification of antibodies by protein A—sepharose chromatography was done essentially as
described in Example 4.
Sortase A mediated conjugation of heavy or light chaing sortase motif tagged anti~CD30
antibodies with Glys—labeled ~MMAE (see Formula 1, Example 5) was performed
essentially according to the protocol provided in Example 7.
As described further abOVe in the detailed description of the invention, ted dy
will retain the C~terminal strep~ll affinity purification tag, which can be exploited to enrich
fully reacted ADC with DAR2. Analysis of the heavy chain sortase A conjugation with VG—
PAB~MMAE toxin via hydrophobicity interaction chromatography (BIC) (Fig. 12, panel A),
shows that the majority of the sortase~motif d heavy chains have been conjugated,
but a certain percentage of unreacted substrate (DARO = drug to antibody ratio = zero), or
partially d substrate (DARl = drug to dy ratio = 1) was still detectable by HEC
(Fig. 12, Panel A).
Therefore, the n A purified vc—PABJVJMIAE conjugate was passed 4 times times over a
essentially as described
. Strep’l‘actin® affinity column (IBA es, Gottingen, Germany),
in Example 7 , in order to remove unreacted or partially reacted sortase A—modified antibody.
Fig. 12, Panel B shows that upon l es of the heterogeneous vc-PAB—MMAE
antibody drug conjugate, completely reacted DARQ ADCs (DAR2 = drug to antibody ratio =
2) could be highly enriched. This experiment demonstrates the feasibility to utilize
additional affinity purification tags added C-terminally to the sortase A LPETG recognition
motif to generate homogeneous ADC with a defined drugs per antibody ratio (here DAR2).
Example 11: Synthesis of 5xg1ycine~modified maytansine and alpha~amanitin toxins
In order to allow conjugation of two different payloads, preferably toxic ds to a single
antibody, d with different sortase motifs at heavy and light chain C—termini, it is
required to modify two different toxins with e residues, preferably toxins with
different mode of actions, such that a cancer cell ed with a dual payload conjugated
ADC, is attacked with Via two different, potentially synergistic routes. The synthesis of We
different glycine~modified toxic payloads (here maytansine and alpha~amanitin) satisfying
this requirement has been performed and is described herein.
2014/055173
11.1 Synthesis of glycine~mcdified alpha~amanitinz
30mg alpha~amanitin (Structure 1) (Sigma~Aldrich, order # A2263) Was dissolved in 1 ml
added,
anhydrous DMSO. To this solution 19mg NH~Boo—amino—hexylbromide were
followed by potassium tert~butoxide (1M solution in THF, 35 at"). The reaction mixture was
solution in THF,
stirred at room temperature for 6 h and more potassium tert~butoxide (1M
at) was added. The reaction was kept at room temperature for 16 h. Acetic acid (10 at")
RP—HPLC directly (Sunflre C18 5p. 3 cmx
was added and the crude e was purified by
cm column, 50 mL/min, 560% acetonitrile/water 15 min gradient). The desired fraction
2 as a white powder
was collected and lyophilized to giVe ure (15 mg), which was
treated with TEA/DOM solution (1/1, WV, 11ml) for 30 minutes at room temperature. The
Volatiles were removed under reduced pressure to give Structure 3 as a slightly ish
without further purification.
gum> which Was used in the next step
Fmoc~Gly5—OH (8 mg) was dissolved in anhydrous DMF (0.5 ml). HATU —Aldrich,
order # 445460) (6 mg) was added, followed by DIEA (10 ml) (Sigma~Aldrich, order
and then transferred
#49 6219). The mixture was agitated gently at room temperature for 30s
to a solution of compound 3 in DMF (0.5 ml). After 30 mins, LC/MS analysis showed that
Piperidine (30 u’f) was added and the ss of the
all of compound 3 was consumed.
the reaction after 1h
reaction was red by LC/MS. Acetic acid was added to neutralize
and the mixture was purified by RP~HPLC (Sunfire C18 5n 3 cm x 25 cm column) 50
mL/min, 240% acetonitrile/water 30 min gradient). The fractions were pooled and
lyophilized to give ure 5 as a white powder (12 mg). ical data for compound
provided mag. 13, panel A).
0 If?"
Fmoo—GlyB‘OH HO". N O \ NH
Scheme 1: Synthesis of glycine—modified alpha~amanifin
11.2. Synthesis of g1ycine~modified maytansine:
Maytansinol (0.6
g, 1.1 mmol) (CleaISynth Labs, , India) was dissolved
anhydrous THF (6 ml) and anhydrous DMF (3 1111) after which 1,2 ml DIEA (Sigma
Zinc
Aldrich, order #496219) was added. The solution was placed under argon atmosphere.
triflate (1.2 g) and NMeAla NCA (0.7 g) were added in one portion. The mixture was
sonioated until the solid was dissolved. The reaction mixture was stirred at room temperature
for 2 days and then d with ethyl acetate (100 ml). It was washed with
NaHCO3 (aq. solution, 2 X 50 ml) and brine (50 ml). The organic layer was dried (oVer
MgSO 4) and concentrated to give the crude maytansinol 3—(S)-alpha—N~
methylaminopropionate which was uSed ly in the next step without r
purification.
Fmoo~Gly5~OH (26 mg) was dissolved in anhydrous DMF (1 ml). HATU (Sigma~Ald1ich,
mixture was agitated
order #- 445460) (19 mg) was added, followed by DIEA (18 uL). The
8 in THE
gently at room temperature for 30s and then transferred to a solution of compound
(1 ml). After 30 mins, LC/MS analysis showed that all compound 8 was consumed.
Piperidine (40 ill) Was added and the ss of the reaction was red by LC/MS.
collected and
Ether (40 ml) was added to the reaction after 2 h and the precipitated solid was
CIS Su 3 cm x
washed with ether. The crude compound was purified by RP-HPLC (Sunfire
cm column, 50 ml/min, 10-60% acetonitrile/water 20 min gradient). The fractions were
pooled and lyophilized to give compound 10 as a white powder (33 mg). Analytical data for
compound 10 is provided in Fig. 13, Panel B.
Fmoc—GIyS—OH
—————+
Scheme 2: Synthesis of glycine-modified maytansine
for sortase
Importantly, it is to be noted that in principle, any toxin can be functionalized
mediated enzymatic conjugation, if either 5 glycines (as shown here), or any number of
the toxins 14
e residues greater or equal than one glycine, are attached to (see Fig. ).
Trastuzumab~DlVIl in
Example 12: In vivo tumor inhibition of sortase A-conjugated
SKOVS cvarial carcinoma xeno graft models.
subcutaneously
5x10 5 SKOV3 tumor cells in ZOOulPBS/Matrigel (1:1 ratio) were ted
mice. y tumor volunies Were
into the left flanks of 5~6 weeks old female NMRI nude
2014/055173
monitored by calipering. After a mean tumor volume of lOQ~200mm3 was reached, tumor~
bearing s were ized into 3 Groups according to tumor sizes (10 animals per
1, 2 and 3
» group). On the day of randomization (day 0) and on day 21, animals of Groups
injected intravenously with, respectively, Smlfkg PBS, 15 rug/kg Kadcyla®, or 15
were
mg/lcg sortase A—conjugated Trastuzumab~DMl Tumor volumes were ed ldy
by calipering (Fig. 15). The study was terminated after 39 days and animals were euthanized
according to accepted animal experimentation ines.
In the couISe of the study, tumors in control animals mock~injected with PBS grew steadily
to a volume of approximately 600mm3. In contrast, tumors in Kadcyla®~tteated annuals
shrank and Were essentially undetectable on day 39. Anti~tumor activity of Sortase A~
conjugated Trastuzumab~DMl did not differ significantly from that of commercially
available Kadcyla®, despite the fact that the sortase~conjugated T~DM1 exhibited a lOWer
drug to antibody ratio of approximately 2, in comparison of a reported DAR of 3.5 of
a®. In combination with the data from e 8, the results demonstrate that sortase
conjugated ADCs, using identical antibody and toxin moiety, have comparable tumor killing
activity in comparison to commmcially available chemically conjugated Kadcyla® in vitro
and in vtvo, albeit at loWer drug to dy ratio.
Example 13: Sortase Aemediated conjugation in crude CHO cell supernatant.
Trastuzumab variant Tras—HC~LS/LC~GGGGS—LS, consisting of heavy chains C—
terminally tagged with LPETG Sortase motif and Strep II purification tag (SEQ ID NOS:
US$056), and light chains C~terminally tagged with a 5 amino acid Gly4~Ser spacer
(GGGGS), LPETG Sortase motif and Strep II tag (SEQ ID NOS: 057~058), was produced
CHO cells essentially as described in Example 4. The resulting serum—free crude cell
supematant contained approximately 157mg£L Tras—HC~LS/LC~GGGGS~LS and was
directly uSed for conjugation essentially as described in Example 9, by adding Sortase
the supernatant. In parallel,
buffer, Gly5~FITC, and serial ons of Sortase A directly to
Tras~HC~LSfLC~GGGGS~LS purified by protein A affinity chromatography was also
conjugated under othe1wise identical conditions. After 4 hours at 42°C, the reactions were
FITC by
analyzed by ning, reducing SDS—PAGE gel ophoresis. After visualizing
Blue
placing the gel on a UV box, protein was stained using Coomassie Brilliant (Fig. 16).
of antibodies in
The data shows the unexpected finding that Sortase A~mediated conjugation
supernatant was efficient as that of d antibody. r, the
crude cell culture as
conjugation reaction was highly specific and none of the protein contaminants t in
crude CHO cell supernatant Were non-specifically conjugated. Together, these data suggest
that the robustness of the Sortase reaction may help facilitate ADC manufacturing by
allowing to m drug conjugation directly after production in CHO cells prior to
ation and downstream processing.
Figure legends
Fig. 1: This figure illustrates the principle of the sortasc A mediated site—specific payload
conjugation to an immunoligand (or binding protein), which can be performed at the N-
terminus of a protein (a), or at the C~terminus of the protein (b). In order to achieve N»
motif
terminal conjugation, the payload needs to contain a sortase penta—peptide recognition
there LPXTG, the ition motif of sortase A from Staphylococcus aureus (X
representing any of the 20 natural amino acids), whereas the N~terminus of the
immunologand/binding protein to be labeled needs to be expressed with an N—terrninal
extension of minimally 3 e residues, here indicated as Gm (with n>2), that has a free
N~terminal amino group (here indicated by the smaller H2N~ symbol). lly 36
Addition
es are used in order to modify a substrate for sortase—mediated conjugation.
then
of recombinant sortas A enzyme from Staphylococcus aureus, as indicated here,
catalyzes the breakage of the peptide bond betWeen the T and the C~terminal G residue in
the LPXTG pentaapeptide motif and forms a new peptide bond between the N—terminal
glycine of the GI, stretch (n>2) and the T residue. The C—terminal G residue of the LPXTG
motif (here highlighted in boldface print) is removed in the transpepiidation reaction, (b)
ConVerSely, in order to achieVe C~terminal conjugation of a payload to a protein, which is
antibodies
the red method for conjugation of payloads, particularly toxins, to (see Fig.
needs to be added to the C~terminal
6), the LPXTG e recognition penta—peptide motif
end of the irnmunoligand/binding protein (eg. by recombinant protein expression
logy, as described in the Examples), and the payload needs to be modified with a
short glycine stretch (Gm, with n>2, typically 3-5 glycines), As described under (a), on
of the (in
of sortase A fiom lococcus aureus will then catalyze the transpeptidation
stretch to the LPXTG motif, whereby the terminal G residue of the LPXTG motif (in
boldface) Will be removed.
Fig. 2: This figure illustrates the principle of intein (a) and split~intein (b) mediated
transpeptidation. (a) Inteins can occur as led ”protein~introns” in precurs0r proteins,
Where they separate N~terminal and inal parts .of a mature protein, which are
generally called N~extein and C~extein. The intein "protein—intrcn" can catalyze the breakage
of the peptide bond between the intein and the C~extein and the formation of a new peptide
bond between the N—extein and C~extein by transfering the N~terminal amino acid of the C-
extein to the C~terminal amino acid of the N—extein in a transpeptidation reaction. The
result of the reaction is the removal of the intein in~intron" from the precurSOr protein
and the generation of a mature protein with a newly created peptide bond betWeen the N~
extein and in s, (b) The intein activity has also been described to be ble
into distinct domains, that can be ed to different proteins, for which this intein
variation has been termed split-intein. The N~i11t and C~int domains of the split intein form a
non~ccvalent structural complex, that can perform the same transpeptidation reaction as a
contiguous intein, on the attached N—extein and C~extein domains that are then in spatial
proximity and part of the complex. The result of the transpeptidation of N~int and C—int
intein on is then a ”protein trans~ splicing", or essentially a protein ligation
between the N-extein and in domains, by ion of anovel peptide bond.
Fig. 3: This figure illustrates how particular split inteins that are characterized by either an
extremely short C~int domain or an extremely short N—int domain can be used to conjugate
(or binding protein), including small molecular entities, any payload to an immunoligand
because short amino acid hes can be synthesisze chemically and can easily be attached
to small molecular entities by conventional chemical coupling. (a) This part of the
illustration shows the use of the Ssp GyrB Sll split intein (described in Appleby et al.
(2009)) for the C~tetminal conjugation of a payload to an immunoligand/binding protein.
Here the C~int domain is only 6 amino acids long and ses the amino
acid sequence
GVFVHN, as indicated. HoweVer, as there need to be some peptides that are the equivalent
the first one needs
of an C~extein domain, additional amino acids need to be added, ofwhich
acid residue, Whereas the remaining amino acids can be
to be a serine or cysteine amino
chosen. This is indicated by the SXI, symbol, which means that a short amino acid stretch
lead at the N~terminal side by serine and followed by 11 amino acids (n>2, preferably 5),
which can be any of the 20 naturally cccuring amino acids (therefore indicated as X). Thus,
as described in the Example, a short 12 amino acid stretch comprising a 6 amino acid mini
CHint domain and 6 amino acid C—ext amino acid stretch are sufficient to allow the N~int/Ca
WO 40317
bond in the
int complex to catalyze the transpeptidation fiom the gine~ serine peptide
GVFVHN—SXn (X any amino acid, n>2, preferably 5) to the peptide bond between the N~
extein and N~int tion. This will result in a C~te1minally conjugated
amino acid
nnmunologand/binding protein with the payload attached via the short C—extein
intein (described
stretch, (b) This part of the illustration shoas the use of the Ssp DnaX split
in Song et a1. (2012)), which can be separate into a Very short, 11 amino acid Nwint domain
C—int domain for N—terminal conjugation of a payload to an
and a 139 aa
immunologand/binding protein. As indicated here, this only requires the synthesis and
coupling of a short 11 amino acid N—int domain to any payload (or the addition by.
of the payload
recombinant protein technology), Which then allows the specific conjugation
that has a 139 amino acid long Ssp DnaX
to the N—terminus of any immunoligand or n,
C~int domain fused to the N—teiminus. The result of this reaction is then a N—teiminally
ligand/binding protein. Therefore, like in the case of sortaSe
conjugated
the arrangement
transpeptidation, Where the N~ oriC—terminal conjugation only depends on
and d,
of the LPXTG and GIl peptide motifs with regard to protein split inteins can
also mediate site~specific N~ and C~terminal ation of proteins With short e
modified payloads, and by t short mini Cant, or mini N—int peptide domains, like
those of Ssp GyrB and Ssp DnaX split inteins, respectively.
and/or
Fig. 4: (a) This Figure rates the utility of adding additional affinity purification
detection tags in addition to a sortase tag in the conjugation of payloads to immunoligands.
added amino acids representing a 6XHiS
(a) this part ofthe Figure shows how an additionally
and a
a Myc-detection tag (EQKLISEEDL) strepll affinity
purification tag (HHHHHH),
purification tag (WSHPQFEK), as described in the es are removed in the course of
the C~te1minal payload conjugation via Staphylococcus aureus sortase A transpeptidase.
This allows to select for the ated product, if Ni—NTA affinity resins (for the s~
tag) or streptactin afifoity resins (for the strep ITtag) are employed to seperate non»
conjugated substrate from conjugated product. This combination of tags is only provided
way ofExample.
is particularly useful to (b) This Figure illustrates that the use of affinity purification tags
select/purifiy completely conjugated product in the case of eric proteins, like
antibodies in the examples, antibodies can be modified
as illustrated here, As also provided
with specific conjugations sites at heavy and light chains, and if the modification is targeted
be conjugated to the
to the C-tennini of IgH and IgL chains, then up to four payloads may
antibody. The on of (a) further ty ation tag(s), e. g. as described in Fig 4(a)
allows to bind incompletely conjugated product, that may only have one, two, or three (as
illustrated here) payloads conjugated to the antibody, still bind to the respectiye affinity
purification resin, and can thus easily be separated from the fully payload~conjugated
product. This paradigm is of course also applicable to intein~modified irnmunologands,
not only to s0rtase~motif~modified logands, as depicted here.
that can also be
Fig. 5: This figure rates avariation of the sortase—mediated conjugation
applied, in which the sortase~enzyme is not added as a te recombinant protein to the
sortase tagged immunologand and glycine stretch modified payload, but where the
the LPXTG sortase
enzymatic sortase domain is sed as a fusion protein C-tenninal to
it is not incubated with glycine~
tag. The sortase enzyme domain Will be inactive as long as
substrate
stretch modified payload (or substrate); As soon as glycine~stretch modified (or
here payload) is added to such a construct, the fused sortase domain Will catalyze
eptidation of glycine—payload substrate to the LPXTG sortase tag, by cleaving the
and e~5 position of the LPXTG tag, and thereby
protein between the threonine~4
that can be
removing the Sortase enzyme domain with additional affinity ation tags,
optionally, This procedure has the advantage that, similar to the
added as depicted here.
domain. can be
addition of catalytically active split~intein domains, the sortase enzyme
the immunoligand
expressed by inant protein technology as an integral component of
to be conjugated.
Fig. 6: (a) This figure illustrates the use of different transpeptidases (here sortase and split-
different payloads to different subunits of a
intein), in order to simultaneously conjugate
multimerio protein, like e.g., the light chains of an antibody.
as ed here, the heavy and
In this selected e, the C~termini of the heavy chains are modified with the N—int
domain of Ssp GyrB (as provided in Example 2), while the light chains are modified with
the sortase A penta~peptide motif LPXTG (as provided in Example 1, the additional tags are
A and With a C—
omitted for simplicity). Incubation with a lglycine~ stretch modified payload
int-domain modified payload B and sortase enzyme will allow the simultaneous and
A to the light chains. If
ive conjugation of payload B to the heavy Chains and payload
payloads A and B are toxins addressing different cellular pathways, this strategy could
ancer drugs, as conventional ADCs, only containing a single
generate more potent
toxin . (b) This figure illustrates the use of different sortase enzymes (here sortase A
and sortase B from lococcus LZW‘BHS), in order to simultaneously conjugate different
payloads to different subunits of a multimeric protein, like e. g., as depicted here, the heavy
and the light chains of an antibody. In this selected example, the C—termini of the heavy
chains for sortase B, NPQTN, While
are modified With the pentapeptide recognition motif
the light chains are modified with the sortase A penta—peptide motif LPXTG. Sequential
and Sortase B will
conjugation of glycine—stretch modified payloads A andB With sortase A
allow the aneous and selective conjugation of payload B to the heavy chains and
payload A to the light chains (remaining peptide Sequences from LPXTG and NPQTN are
toxins addressing
omitted in the conjugated structure for simplicity). prayloads A and B are
different cellular ys, this gy could generate more potent anti~eancer drugs, as
conventional ADCs, only containing a single toxin .
Fig. 7: GE (a) and Western~blot (13.) analysis of recombinant enzymatically active
e A fragment of Staphylococcus ourcus. (a) Lane lin the SIDS—PAGE contains BSA
of Genscript (Cat-N1:
(ca. 66.4 kD), Lane Mi contains protein lar weight standard
A of
M00505), Lane 2 contains His~tag purified recombinant sortase fragment
Staphylococcus aurcus. The proteins in the SDS—PAGE are stained with Commassie blue.
Cat.—Nr.:
(b.) The Westem~blot was developed with an anti~His antibody (Genscript
AA00186). Lane 3 contains His—tag ed recombinant sortase A fragment of
standard of Genscript (Cat.~Nr.:
Staphylococcus aurcus. Lane M2 contains molecular Weight
Mix/£0908).
Fig. 8: Hydrophobic Interaction Chromatography (HIC) analysis of DM1 ~toxin conjugated
C—GS—LHS (A) and Tras—LC—GS~LHS (B). DARl indicates drug to antibody ratio of
ratio of2.
1; DAR2 indicates a drug to antibody
indicated ADCs on HERZ—overexpressing
Fig. 9: Dose response of cytotoxic effects of the
SKBR3 (A) and HER2~negatiVe R cells (B). Cells Were incubated with serial
dilutions of ADCs for 3 days, after Which cell viability Was detected by CellTiter—Glo®
Luminescent Solution (Promega). LC: DlVll~SortaseA~conjugatecl Tras~LC~GS~LHS; HG:
DM lasortaseA—conjugated Tras-HC~GS~LHS.
W0 2014/14031’7
conjugation of Glys—FITC to mAb AclO variants with or
Fig. 10: Sortase A—mediated
Without GS peptide spacer. Serial ons of SortaSe A were used to conjugate Glys—FITC
tc mAb AclO~HC~GS~LHS/LC~GS~LHS (A) and rnAb AclO~HC~LS/LC~LS (B) under
otherwiSe identical conditions. Reaction products were scperated by size on denaturing,
reducing SDS—PAGE gels, FlTC was visualized by placing the gels on aUV box. Sortase
concentrations uSed Were: lanes 1, 9: SOnM; lanes 2, 10: 25nM; lanes 3, 11: 12.5nM; lanes
4, 12: 6.25tLM,‘ lanes 5, 13: 3.13nM; lanes 6, 14: ‘l.56tLM;lanes 7, 15: ,‘ lanes 8, 16:
0.39uM.
Serial
Fig. 11: Influence of peptide spacer length on light chain ation efficiency.
AclO~HC~LS/LC~GS—LS
dilutions ofScrtase A were used. to conjugate ciy'srn‘c to mAbs
left), AclO~HC~LS/LC~GGS~LS (A, right), AclO—HC-LS/LGGGGS—LS (B, left) and
C~LS/LC~GGGGS~LS (13, right) under otherwise identical conditions. Reaction
seperated by size denaturing, reducing GE gels. FITC was
products were on
visualized by placing the gels on aUV boX. e A concentrations used Were: lanes 1, 8,
, 22: 25uM; lanes 2, 9, 16, 23: 12.5uM; lanes 3, 10, 17, 24: 6.25uM,’ lanes 4, 11, 18, 25:
12, 19, 26: ; lanes 6, 13, 20, 27: 0.78uM; lanes 7, 14, 21, 28:
3.13t1M,‘ lanes 5,
0.39aM
Fig. 12: Analysis of SortaseA Vc~PAB~1VflviAE toxin heavy—chain—conjugated ADC of mAb
AclO by hobicity interaction chromatography (HIC), which is able to differentiate
unreacted substrate CDARO = 0 drug to antibody ratio), substrate in which one of the two
heavy chains has been conjugated (DARl = l drug to dy , and substrate in which
to antibody ratio), as
both modified heavy chains have been conjugated (DAR2 = 2 drugs
indicated Panel A shows the HIC profile after a standard e A mediated conjugation of
HC modified AclO rnAb, inwhich still DARO and DARl species are detectable, next to the
desired DAR2 product. Panel B showa the ETC profile after 4 passes of the ADC preparation
analyzed in Panel A over a StrepTactin® affinity purification column.
toxin (a) and Glys-niodified
Fig. 13: Analysis of synthesized Glys~rnodified alpha~ amanitin
maytansin toxin (b.). In each of the panels a.) and b.) the snthesized structure is provided on
top, with the five glycines highlighted by a box, The analysis of each compound by mass
spectrometry and reverse—phase HPLC is provided below. a.) The expected mass of the
Glys~rnodified alpha~ amanitin toxin is 1302.07 D, the observed mass is 1325.38 D,
coirespcnding to Ms + Na+. The RP~HPLC profile indicates a purity of > 95%. b.) The
ed mass of the Glys—moditied maytansine toxin is 991.41 D, the observed mass is
of > 95%.
957.69 D, ponding to Ms + Na+. The RP~HPLC profile indicates a purity
been synthesized by
Fig. 14: Structures of SXGlycine (Gly5) modified toxins that either have
Concortis, San Diego, CA, US. (structures 16, and 9), or that can be synthesized (structures
7 85 mediated enzymatic
8), demonstrating that any toxin can be functionalized for e
conjugation, if either 5 glycines are attached to the toxins (as shoWn here), or any number of
glycine residues greater or equal than one glycine. G1ycine~modif1ed toxins can either be
synthesized ning additional validated linker/spacer structures as provided in structures
1-3 in Fig. 14 a), ially adding certain additional functionality (e.g. bility in
certain subcellular compartments) or Without additional s, as depicted in structures
in the case of
in Fig. 14 b). If several reactive groups are available at a given toxin, like eg.
alpha—amanitin toxin, glycine residues can be added'to these different groups as exemplified
in structures 7-9 in Fig. 14c).
Fig. 15: Tumor volumes as determined in Example 12. The results demonstrate that sortase
conjugated ADCs, using identical antibody and toxin moiety, have comparable tumor killing
activity in comparison to commercially available chemically conjugated Kadcyla®.
Fig. 16: Gels stained With Coomassie blue as described in example 13 The data shows the
cell culture
cted finding that Sortase ated conjugation of antibodies in crude
supernatant was as efficient as that of purified antibody.
References
Amos et al. (2009a) J.Am, Chem. Soc. 131,131). 1080040801
Amos et al. (2009b) J,B101. Chem. 284, 16028~16036
Appleby et a1. (2009) JBC 284, 619499
Axup et a1. (2012) Proc. Natl, Acad. Sci USA 109, 1610246106
Elleuche (2010) Appl. Microbiol. Biotechnol. 87, 479489
Grams—Portal et a1. (1995) M01, C611. B101. 15, p1182ff
Hofer et a1. (2009) Biochemistry 48, 12047-57
Junutula et a1. (2008) Nat. hol., 26, 925~932
c (2012) British I C1111 Phalmacol 76, 248262,
Lemke (2011) Methods M01. B101. 751, 3—15
Levary et a1. (2011) PLOS One 6, 018342
Madej 619.1. (2012)B1'otechn01. Bioeng. 109, 1461—1470
Mao et a1. (2004) 1.11111. Chem. Soc. 126, 2670—2671,
Mamanian et a1. (1999) Science 285, 760~763
MoDonagh et a1. (2006) Prof. Engin. Design 86160121011 19, 299~307
lm et a1. (2011) Chembioohem. 12, 1774~1780,
Mflliard (2013) Nature Rev. Drug Discov. 12, 329632),
sarathy et a1. (2007) Bioconjugate Chem, 18, 6
Perler (2002) Nucl. Acids Res. 30, 383-3 84
Song et a1. (2012) PLOS One 7, (245355
Spirig et a1. (2011) Mo1ecular Microbiol, 82, 1044—1059
Sun et al. (2004) I.Biol, Chem. 279, 35281—35286
SW66 et a1. (2013) Proc. Natl, Acad. Sci USA 110, 14284433
at et a1. (1999) Proc. Natl. Acad. Sci USA 96, 12424-12429
Tsuldji (2009) Chembiochem. 10, 787—798)
Voflcmann et a1. (2009) PLOS One 4, 68381
Xu et a1. (1993) C611 75, 13714377
Claims (20)
- What is claimed isl. A method of producing an immunoligand/payload conjugate, which method encompassesconjugating at least one payload to an immunoligand by means of a sequence—specifictranspeptidase, or a catalytic domain thereof,wherein the immunoligand sed in the immunoligand/payload conjugate is at leastone selected from the group consisting of(i) an antibody,(ii) an antibody—based g protein being a protein containing at least one antibody—derived VH, VL, or CH globulin domain,(iii) an antibody fragment binding to a receptor, antigen, growth factor, ne and/orhormone, and(iv) an antibody mimetic selected from the group consisting ofDARPins, C-type lectins,in proteins of S. aureus, transferrins, lipocalins, 10th type III domains of fibronectin,Kunitz domain se inhibitors, affilins, gamma crystallin derived binders, ne knots orknottins, thioredoxin A scaffold based binders, nucleic acid aptamers, artificial antibodiesproduced by molecular ting of polymers, and stradobodies, wherein the sequence—specific transpeptidase is a sortase enzyme which izes a pentapeptide recognition motif,and n the payload is a cytotoxic compound not exceeding a molecular weight of2500 daltons that is cytotoxic to mammalian cells wherein either0 the immunoligand comprises a sortase ition motif and the cytotoxiccompound is modified with a Glyn-modification, wherein n>1, orn the cytotoxic compound comprises a sortase recognition motif and theimmunoligand is modified with a Glyn~modification, wherein n>l.
- 2. The method according to claim 1, wherein the immunoligand binds at least one entity selectedfrom the group consisting ofv a receptora an antigen. a growth factor,0 a cytokine, ando a hormone.
- 3. The method according to either claim 1 or 2, wherein at least one catalytic domain of thesequence-specific transpeptidase is fused to the C-terminus of either the irnmunoligand or thepayload.
- 4. The method according to any one of claims 1 to 3, wherein said immunoligand comprises atleast two subunits each being conjugated to a payload.
- 5. The method according to claim 4, wherein said immunoligand with at least two subunits isconjugated to at least two different payloads, at least one of which is a toxin not exceeding amolecular weight of 2500 daltons.
- 6. The method according to either claim 4 or 5, wherein said immunoligand with at least twosubunits contains a peptide spacer ce of at least two amino acids, appended to the C-terminus of at least one of the two subunits.
- 7. The method ing to any one of claims 4 to 5, wherein method allows astoichiometrically defined relationship between immunoligand and d.
- 8. The method ing to claim 7, in which method said stoichiometrically definedrelationship between immunoligand and payload is achieved by removal ofpartially reacted C—terminally modified immunoligand substrate.
- 9. The method according to claim 8, in which method ses the use of at least two affinitypurification tags,which affinity purification tags are bound to at least two ent sites of the antibody,mimetic Via emodified antibody format, antibody derivative or nt, and/or antibodyrecognition motifs prior to the conjugation of the at least one small molecular toxin,which method further comprises an affinity purification step,in which affinity purification step conjugates which after the conjugation of at least one smallmolecular toxin to the antibody, modified antibody format, antibody derivative or fragment,and/or antibody c, still bear affinity purification tags, and thus qualify as incompleteconjugates, are separated from the complete conjugates by affinity purification.
- 10. The method according to any one of claims 1 to 9, which method allows a pecificconjugation of the payload to the immunoligand.
- 11. An immunoligand/payload conjugate obtained with the method according to any one ofclaims 1 to 10, which conjugate comprises at least one of(i) an antibody,(ii) an antibody—based binding protein being a n containing at least one antibody»derived VH, VL, or CH oglobulin domain,(iii) an antibody fragment binding to a receptor, n, growth factor, cytokineand/or hormone, or(1V) an antibody mimetic selected from the group consisting of DARPins, C—typelectins, A—domain proteins of S. aureus, transferrins, lipocalins, 10th type 111domains of fibronectin, Kunitz domain se inhibitors, affilins, gammacrystallin derived binders, cysteine knots or ns, thioredoxin A scaffold baseds, nucleic acid aptamers, artificial antibodies produced by larting of polymers, and stradobodies,and a cytotoxic compound not exceeding a molecular weight of 2500 daltons,wherein the conjugate further ses at least one linker that conjugates a payload to theimmunoligand, which linker comprises a peptide motif that is a sortase recognition motif, andis conjugated to the C—terminus of at least one peptide chain of the immunoligand.
- 12. The immunoligand/payload conjugate according to claim 11, which conjugate further
- comprises a sortase recognition motif that has undergone transpeptidation reaction.
- 14. The irnmunoligand/payload conjugate according to any one of claim 11 to 13 for use in thetreatment of a human or animal subject suffering from or being at risk of developing a givenpathologic condition.
- 15. The immunoligand/payload conjugate for use according to claim 14, wherein saidpathologic condition is at least one selected from the group consisting ofo neoplastic disease- autoimmune disease0 neurodegenerative disease, and- infectious disease.
- 16. The method according to any one of claims 1—10, in which the immunoligand—payloadconjugation is performed in crude cell culture supernatant.
- 17. The method according to any one of claims 4—5, wherein said immunoligand with at leasttwo ts contains a peptide spacer sequence of two—five amino acids, appended to the C—terminus of at least one of the two subunits.
- 18. The immunoligand/payload conjugate of claim 11, wherein a non-cleavable linker isestaboished which comprises or consists of a peptidic motif resulting from specific cleavage ofa sortase enzyme ition motif,wherein the peptidic motif ing from specific cleavage of the e enzymerecognition motif is LPET and/orwherein the peptidic motif resulting from specific cleavage of the sortase enzymeition motif is LPQT.
- 19. The immunoligand/payload conjugate of claim 18, n the sortase enzyme recognitionmotif is selected from the group consisting ofLPXTG, LPQTG, LPETG, NPQTN and LPLTG.
- 20. The immunoligand/payload conjugate ofclaim 19, wherein the linker comprises or consistsofthe ce LPETG.21‘. The immunoligand/payload conjugate of claim 19, wherein the linker comprises or consistsof the sequence LPQTG.
Applications Claiming Priority (7)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361787371P | 2013-03-15 | 2013-03-15 | |
| US61/787,371 | 2013-03-15 | ||
| EP13159484.8 | 2013-03-15 | ||
| EP13159484.8A EP2777714A1 (en) | 2013-03-15 | 2013-03-15 | Method of producing an immunoligand/payload conjugate by means of a sequence-specific transpeptidase enzyme |
| US201461939754P | 2014-02-14 | 2014-02-14 | |
| US61/939,754 | 2014-02-14 | ||
| PCT/EP2014/055173 WO2014140317A2 (en) | 2013-03-15 | 2014-03-14 | Method of producing an immunoligand/payload conjugate |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| NZ711762A NZ711762A (en) | 2021-04-30 |
| NZ711762B2 true NZ711762B2 (en) | 2021-08-03 |
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