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AU2017204248B2 - Compounds for treating spinal muscular atrophy - Google Patents
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AU2017204248B2 - Compounds for treating spinal muscular atrophy - Google Patents

Compounds for treating spinal muscular atrophy Download PDF

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AU2017204248B2
AU2017204248B2 AU2017204248A AU2017204248A AU2017204248B2 AU 2017204248 B2 AU2017204248 B2 AU 2017204248B2 AU 2017204248 A AU2017204248 A AU 2017204248A AU 2017204248 A AU2017204248 A AU 2017204248A AU 2017204248 B2 AU2017204248 B2 AU 2017204248B2
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Soongya CHOI
Amal DAKKA
Luke Green
Gary Mitchell Karp
Jana Narasimhan
Nikolai Naryshkin
Emmanuel Pinard
Hongyan Qi
Hasane Ratni
Anthony A. Turpoff
Marla L. Weetall
Ellen Welch
Matthew G. Woll
Tianle Yang
Nanjing Zhang
Xiaoyan Zhang
Xin Zhao
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F Hoffmann La Roche AG
PTC Therapeutics Inc
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Abstract

Provided herein are compounds, compositions thereof and uses therewith for treating spinal muscular atrophy. F////, x-onIntron 6 Exn Intron 7 Eo U Pre-mRNA Spliced mRNA Luciferase +Compound A Activity Exn 6xon Exon 7Exon 8 luc + Yes -Compound Stop Exon 6 Exon 8 luc + No Figure 1

Description

[0001] The technology described herein has not been made with U.S. Government support.
CROSS-REFERENCE [0002] This application claims the benefit of priority to United States Provisional Application Serial No. 61/597,523, filed February 10, 2012, which is incorporated herein by reference in its entirety and for all purposes.
STATEMENT ON JOINT RESEARCH AGREEMENT [0003] The subject matter disclosed was developed and the claimed invention was made by, or on behalf of, one or more parties to a joint research agreement that was in effect on or before the effective filing date of the claimed invention;
[0004] the claimed invention was made as a result of activities undertaken within the scope of the joint research agreement; and [0005] the application for patent for the claimed invention discloses or is amended to disclose the names of the parties to the joint research agreement.
INTRODUCTION [0006] Provided herein are compounds, compositions thereof and uses therewith for treating Spinal Muscular Atrophy.
BACKGROUND [0007] Spinal muscular atrophy (SMA), in its broadest sense, describes a collection of inherited and acquired central nervous system (CNS) diseases characterized by progressive motor neuron loss in the spinal cord and brainstem causing muscle weakness and muscle atrophy. The most common form of SMA is caused by mutations in the Survival Motor Neuron (SMN) gene and manifests over a wide range of severity affecting infants through adults (Crawford and Pardo, Neurobiol. Dis., 1996, 3:97).
2017204248 22 Jun 2017 [0008] Infantile SMA is the most severe form of this neuro degenerative disorder. Symptoms include muscle weakness, poor muscle tone, weak cry, limpness or a tendency to flop, difficulty sucking or swallowing, accumulation of secretions in the lungs or throat, feeding difficulties, and increased susceptibility to respiratory tract infections. The legs tend to be weaker than the arms and developmental milestones, such as lifting the head or sitting up, cannot be reached. In general, the earlier the symptoms appear, the shorter the lifespan. As the motor neuron cells deteriorate, symptoms appear shortly afterward. The severe forms of the disease are fatal and all forms have no known cure. The course of SMA is directly related to the rate of motor neuron cell deterioration and the resulting severity of weakness. Infants with a severe form of SMA frequently succumb to respiratory disease due to weakness in the muscles that support breathing. Children with milder forms of SMA live much longer, although they may need extensive medical support, especially those at the more severe end of the spectrum. The clinical spectrum of SMA disorders has been divided into the following five groups.
[0009] (a) Type 0 SMA (In Utero SMA) is the most severe form of the disease and begins before birth. Usually, the first symptom of Type 0 SMA is reduced movement of the fetus that can first be observed between 30 and 36 weeks of pregnancy. After birth, these newborns have little movement and have difficulties with swallowing and breathing.
[0010] (b) Type 1 SMA (Infantile SMA or Werdnig-Hoffmann disease) typically presents symptoms between 0 and 6 months. This form of SMA is also very severe. Patients never achieve the ability to sit, and death usually occurs within the first 2 years without ventilatory support.
[0011] (c) Type 2 SMA (Intermediate SMA) has an age of onset at 7-18 months. Patients achieve the ability to sit unsupported, but never stand or walk unaided. Prognosis in this group is largely dependent on the degree of respiratory involvement.
[0012] (d) Type 3 SMA (Juvenile SMA or Kugelberg-Welander disease) is generally diagnosed after 18 months. Type 3 SMA individuals arc able to walk independently at some point during their disease course but often become wheelchair-bound during youth or adulthood. [0013] (e) Type 4 SMA (Adult onset SMA). Weakness usually begins in late adolescence in the tongue, hands, or feet, then progresses to other areas of the body. The course of adult SMA is much slower and has little or no impact on life expectancy.
2017204248 22 Jun 2017 [0014] The SMN gene has been mapped by linkage analysis to a complex region in chromosome 5q. In humans, this region contains an approximately 500 thousand base pairs (kb) inverted duplication resulting in two nearly identical copies of the SMN gene. SMA is caused by an inactivating mutation or deletion of the telomeric copy of the gene (SMN1) in both chromosomes, resulting in the loss of SMN1 gene function. However, all patients retain the centromeric copy of the gene (SMN2), and the copy number of the SMN2 gene in SMA patients generally correlates inversely with the disease severity; i.e., patients with less severe SMA have more copies of SMN2. Nevertheless, SMN2 is unable to compensate completely for the loss of SMN1 function due to alternative splicing of exon 7 caused by a translationally silent C to T mutation in exon 7. As a result, the majority of transcripts produced from SMN2 lack exon 7 (SMN2 Δ7), and encode a truncated Smn protein that has an impaired function and is rapidly degraded.
[0015] The Smn protein is thought to play a role in RNA processing and metabolism, having a well characterized function of mediating the assembly of a specific class of RNA-protein complexes termed snRNPs. Smn may have other functions in motor neurons, however its role in preventing the selective degeneration of motor neurons is not well established.
[0016] In most cases, SMA is diagnosed based on clinical symptoms and by the absence of all copies of exon 7 in the SMN1 gene, as determined by genetic testing. However, in approximately 5% of cases, SMA is caused by mutations other than a deletion of the entire SMN1 gene or other than a deletion of the entire exon 7 in the SMN1 gene, some known and others not yet defined. In such cases, when the SMN 1 gene test is not feasible or the SMN 1 gene sequence does not show any abnormality, other tests such as an electromyography (EMG) or muscle biopsy may be indicated.
[0017] Medical care for SMA patients at present is limited to supportive therapy including respiratory, nutritional and rehabilitation care; there is no drug known to address the underlying cause of the disease. Current treatment for SMA consists of prevention and management of the secondary effects of chronic motor unit loss. The major management issue in Type 1 SMA is the prevention and early treatment of pulmonary problems, which are the primary cause of death in the majority of the cases. While some infants afflicted with SMA grow to be adults, those with Type 1 SMA have a life expectancy of less than two years.
2017204248 22 Jun 2017 [0018] Several mouse models of SMA have been developed. In particular, the SMNA7 model (Le et al., Hum. Mol. Genet., 2005, 14:845) carries both the SMN2 gene and several copies of the SMN2A7 cDNA and recapitulates many of the phenotypic features of Type 1 SMA. The SMNA7 model can be used for both SMN2 expression studies as well as the evaluation of motor function and survival. The C/C-allele mouse model (Jackson Laboratory strain No.: 008714) provides a less severe SMA disease model, with mice having reduced levels of both SMN2 full length (SMN2 FL) mRNA and Smn protein. The C/C-allele mouse phenotype has the SMN2 gene and a hybrid mSmnl-SMN2 gene that undergoes alternative splicing, but does not have overt muscle weakness. The C/C-allele mouse model is used for SMN2 expression studies.
[0019] As a result of improved understanding of the genetic basis and pathophysiology of SMA, several strategies for treatment have been explored, but none have yet demonstrated success in the clinic.
[0020] Gene replacement of SMN1, using viral delivery vectors, and cell replacement, using differentiated SMN1+/+ stem cells, have demonstrated efficacy in animal models of SMA. More research is needed to determine the safety and immune response and to address the requirement for the initiation of treatment at the neonatal stage before these approaches can be applied to humans.
[0021] Correction of alternative splicing of SMN2 in cultured cells has also been achieved using synthetic nucleic acids as therapeutic agents: (i) antisense oligonucleotides that target sequence elements in SMN2 pre-mRNA and shift the outcome of the splicing reaction toward the generation of full length SMN2 mRNA (Passini et al., Sci. Transl. Med., 2011, 3:72ral8; and, Hua et al., Nature, 2011, 478:123) and (ii) trans-splicing RNA molecules that provide a fully functional RNA sequence that replace the mutant fragment during splicing and generate a full length SMN1 mRNA (Coady and Lorson, JNeurosci., 2010, 30:126).
[0022] Other approaches under exploration include searching for drugs that increase Smn levels, enhance residual Smn function, or compensate for loss of Smn. Aminoglycosides have been shown to enhance expression of stabilized Smn protein produced from SMN2 Δ7 mRNA by promoting the translational read-through of the aberrant stop codon, but have poor central nervous system penetration and are toxic after repeated dosing. Chemotherapeutic agents, such as aclarubicin, have been shown to increase Smn protein in cell culture; however, the toxicity
2017204248 22 Jun 2017 profile of these drugs prohibits long-term use in SMA patients. Some drugs under clinical investigation for the treatment of SMA include transcription activators such as histone deacetylase (“HDAC”) inhibitors (e.g., butyrates, valproic acid, and hydroxyurea), and mRNA stabilizers (mRNA decapping inhibitor RG3039 from Repligen), intended to increase the amount of total RNA transcribed from the SMN2 gene. However, the use of HDAC inhibitors or mRNA stabilizers does not address the underlying cause of SMA and may result in a global increase in transcription and gene expression with potential safety problems in humans.
[0023] In an alternative approach, neuroprotective agents such as olesoxime have been chosen for investigation. Such strategies are not aimed at increasing the production of functional Smn for the treatment of SMA, but instead are being explored to protect the Smn-deficient motor neurons from neurodegeneration.
[0024] A system designed to identify compounds that increase the inclusion of exon 7 of SMN into RNA transcribed from the SMN2 gene and certain benzooxazole and benzoisoxazole compounds identified thereby have been described in International Application PCT/US2009/003238 filed May 27, 2009 (published as International Publication Number W02009/151546 and United States Publication Number US2011/0086833). A system designed to identify compounds that produce a stabilized Smn protein from SMN2 Δ7 mRNA and certain isoindolinone compounds identified thereby have been described in International Application PCT/US2009/004625 filed August 13, 2009 (published as International Publication Number W02010/019236 and United States Publication Number US2011/0172284). Each of the foregoing documents is herein incorporated in their entirety and for all purposes.
[0025] All other documents referred to herein are incorporated by reference into the present application as though fully set forth herein.
[0026] Despite the progress made in understanding the genetic basis and pathophysiology of SMA, there remains a need to identify compounds that alter the course of spinal muscular atrophy, one of the most devastating childhood neurological diseases.
SUMMARY [0027] In one aspect, provided herein are compounds of Formula (I):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0001
(I) [0028] or a form thereof, wherein wi, w2, W3, W4, W5, W6 and W7 are as defined herein. In one embodiment, provided herein is a pharmaceutical composition comprising a compound of Formula (I) or a form thereof, and a pharmaceutically acceptable carrier, excipient or diluent. In a specific embodiment, provided herein is a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof for treating spinal muscular atrophy (SMA).
[0029] SMA is caused by deletion or mutation of the SMN1 gene, resulting in selective degeneration of Smn-deficient motor neurons. Although human subjects retain several copies of the SMN2 gene, the small amount of functional Smn protein expressed from SMN2 does not fully compensate for the loss of Smn that would have been expressed from the SMN1 gene. The compounds, compositions thereof and uses therewith described herein are based, in part, on the Applicants discovery that a compound of Formula (I) increases the inclusion of exon 7 of SMN2 into mRNA that is transcribed from an SMN2 minigene. The minigene reproduces the alternative splicing reaction of exon 7 of SMN2 which results in exon 7 skipping in the majority of SMN2 transcripts. Thus, compounds of Formula (I) or a form thereof may be used to modulate inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. Applicants have also discovered that a compound of Formula (I) increases the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from an SMN1 minigene. Thus, compounds of Formula (I) or a form thereof may be used to modulate inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN 1 gene.
[0030] In a specific embodiment, provided herein are compounds of Formula (I) or a form thereof that may be used to modulate the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. In another specific embodiment, provided herein are compounds of Formula (I) or a form thereof that may be used to modulate the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene. In yet another embodiment, provided herein are compounds of Formula (I) or a form thereof that may be used to modulate the inclusion of exon 7 of SMN 1 and SMN2 into mRNA that is transcribed from the SMN1 and SMN2 genes, respectively.
2017204248 22 Jun 2017 [0031] In another aspect, provided herein is the use of a compound of Formula (I) or a form thereof for treating SMA. In a specific embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a form thereof. The compound of Formula (I) or a form thereof is preferably administered to a human subject in a pharmaceutical composition. In another specific embodiment, provided herein is the use of a compound of Formula (I) for treating SMA, wherein the compound enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. Without being limited by theory, compounds of Formula (I) enhance inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene and increase levels of Smn protein produced from the SMN2 gene, and thus can be used to treat SMA in a human subject in need thereof.
[0032] In another aspect, provided herein are primers and/or probes described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13, and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) and the use of those primers and/or probes. In a specific embodiment, provided herein is an isolated nucleotide sequence comprising SEQ ID NO. 1, 2, 3, 7, 8, 9, 10, 11, 12 or 13. In another specific embodiment, provided herein is an isolated nucleotide sequence consisting essentially of SEQ ID NO. 1, 2, 3, 7, 8, 9, 10, 11, 12 or 13. In another specific embodiment, provided herein is an isolated nucleotide sequence consisting of SEQ ID NO. 1, 2, 3, 7, 8, 9, 10, 11, 12 or 13.
[0033] In certain embodiments, the amount of mRNA that is transcribed from the SMN1 gene and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 may be used as a biomarker for SMA, such as disclosed herein. In other embodiments, the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 may be used as a biomarker for treating a patient with a compound, such as disclosed herein. In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0034] In certain embodiments, the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 as well as the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 may be used as biomarkers for treating a patient with a compound, such as
2017204248 22 Jun 2017 disclosed herein. In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0035] In accordance with these embodiments, an SMN primer(s) and/or an SMN probe described below may be used in assays, such as PCR (e.g., qPCR), rolling circle amplification, and RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR) to assess and/or quantify the amount of mRNA that is transcribed from the SMN1 gene and/or SMN2 gene and does or does not include exon 7 of SMN1 and/or SMN2.
[0036] In a specific embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to determine whether a compound (e.g., a compound of Formula (I) or a form thereof) enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from an SMN2 gene.
[0037] In a specific embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to determine whether a compound (e.g., a compound of Formula (I) or a form thereof) enhances the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from an SMN1 gene.
[0038] In a specific embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to determine whether a compound (e.g., a compound of Formula (I) or a form thereof) enhances the inclusion of exon 7 of SMN 1 and/or SMN2 into mRNA that is transcribed from an SMN1 and/or SMN2 gene.
[0039] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 7, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RT8
2017204248 22 Jun 2017 qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor the amount of mRNA that is transcribed from the SMN2 gene and includes exon 7 of SMN2 in a patient sample. In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0040] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 7, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor the amount of mRNA that is transcribed from the SMN1 gene and includes exon 7 of SMN1 in a patient sample. In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0041] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 7, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in a patient sample. In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0042] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 7, 8, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor a patient’s response to a compound (e.g., a compound of Formula (I) or a form thereof). In a specific embodiment, the patient is an SMA patient. In another specific embodiment, the patient is not an SMA patient.
[0043] In another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7
2017204248 22 Jun 2017 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising (a) contacting mRNA that is transcribed from an SMN2 minigene described herein or in International Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a compound (e.g., a compound of Formula (I) disclosed herein) with a primer(s) described herein (e.g., SEQ ID NO. 1 and/or 2) along with applicable components for, e.g., RT-PCR, RT-qPCR, PCR, endpoint RT-PCR, qPCR or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
[0044] in another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene, comprising (a) contacting mRNA that is transcribed from an SMN1 minigene described in International Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a compound (e.g., a compound of Formula (I) disclosed herein) with a primer(s) described herein (e.g., SEQ ID NO. 1 and/or 2) along with applicable components for, e.g, RT-PCR, RT-qPCR, PCR, endpoint RT-PCR, qPCR or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN1, wherein (1) an increase in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1
2017204248 22 Jun 2017 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene.
[0045] In another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising (a) contacting mRNA that is transcribed from an SMN2 minigene described herein or in International Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a compound (e.g., a compound of Formula (I) disclosed herein) with a probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g., RT-PCR, RT-qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
[0046] In another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene, comprising (a) contacting mRNA that is transcribed from an SMN1 minigene described in International Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a
2017204248 22 Jun 2017 compound (e.g., a compound of Formula (I) disclosed herein) with a probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g., RT-PCR, RT-qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN1, wherein (1) an increase in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN 1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN 1 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
[0047] In another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising (a) contacting mRNA that is transcribed from an SMN2 minigene described herein or in international Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a compound (e.g., a compound of Formula (I) disclosed herein) with a primer(s) (e.g., SEQ ID NO. 1 or 2) and/or a probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g, RT-PCR, RT-qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the minigcnc and includes exon 7 of SMN2 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the presence of the compound relative to the
2017204248 22 Jun 2017 amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN2 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
[0048] In another embodiment, provided herein is a method for determining whether a compound (e.g., a compound of Formula (I) disclosed herein) enhances the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene, comprising (a) contacting mRNA that is transcribed from an SMN1 minigene described in International Application PCT/US2009/004625, filed August 13, 2009 (published as International Publication Number W02010/019236) or United States Publication Number US2011/0172284 in the presence of a compound (e.g., a compound of Formula (I) disclosed herein) with a primer(s) (e.g., SEQ ID NO. 1 or 2) and/or a probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g, RT-PCR, RT-qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the minigene and includes exon 7 of the SMN1, wherein (1) an increase in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the absence of the compound indicates that the compound enhances inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN 1 in the presence of the compound relative to the amount of mRNA that is transcribed from the minigene and includes exon 7 of SMN1 in the absence of the compound indicates that the compound does not enhance the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN 1 gene.
[0049] In another aspect, provided herein are kits comprising a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) and the use thereof.
BRIEF DESCRIPTION OF THE FIGURES [0050] Figure 1, referenced in Biological Example 1, is a schematic drawing of the SMN2-A minigene construct, which produces two alternatively spliced mRNA transcripts: a full length
2017204248 22 Jun 2017 mRNA that contains exon 7 and a Δ7 mRNA that lacks exon 7. The adenine nucleotide inserted in exon 7 of SMN2-A after nucleic residue 48 is represented by the letter “A.” Alternatively, the nucleotide may also be selected from cytosine or thymine. Due to the insertion of one nucleotide (A, C, or T) after nucleic residue 48, the full length mRNA does not contain a stop codon in the SMN open reading frame, whereas the Δ7 mRNA has a stop codon in Exon 8 that is indicated by the word “Stop.” [0051] Figure 2, referenced in Biological Example 1, provides the DNA sequence of the minigene from the SMN2-A minigene construct SEQ ID NO. 21 (Figure 2a). As shown in Figure 2b, the following sub-sequences can be found:
1-70: 5’UTR(deg);
71-79: exon 6: start codon and BamHI site (atgggatcc);
80-190: exon 6;
191-5959: intron 6;
5960-6014: exon 7 with the adenine nucleotide “A” insert (position 6008);
6015-6458: intron 7;
6459-6481: part of exon 8;
6482-8146: BamHI site (sequence at the 5’ end), luciferase coding sequence starting with codon 2 (without initiation codon), Notl site (sequence at the 3’ end), TAA stop codon; and
8147-8266: 3’UTR(deg).
[0052] To generate the SMN1 version of the minigene, the sixth nucleotide of exon 7 (a thymine residue) of the SMN2-A minigene construct is changed to cytosine using site directed mutagenesis. Thus, similar to the SMN2-A minigene construct, the SMN 1 minigene construct has a single adenine residue inserted after nucleic residue 48 of exon 7. The SMN1 minigene construct is referred to as SMN1-A. Similarly, the nucleotide inserted in the SMN1 minigene construct after nucleic residue 48 of exon 7 may also be selected alternatively from cytosine or thymine.
[0053] Figure 3, referenced in Biological Example 2, shows the correction of SMN2 minigene alternative splicing in cells treated with rising concentrations of Compound 6 (Figure 3a) and Compound 170 (Figure 3b) over a 24 hr period. The levels of full length SMN2 minigene mRNA were quantified using reverse transcription-quantitative PCR (RT-qPCR). The
2017204248 22 Jun 2017 level of full length SMN2 minigene mRNA in compound-treated samples was normalized to that in vehicle-treated samples and plotted as a function of the compound concentration.
[0054] Figure 4, referenced in Biological Example 3, shows the correction of SMN2 alternative splicing in Type 1 SMA patient fibroblasts treated with rising concentrations of Compound 6 (Figure 4a) and Compound 170 (Figure 4b) over a 24 hr period. The levels of full length and Δ7 SMN2 mRNA were quantified using RT-qPCR. The levels of full length and Δ7 SMN2 mRNA in compound-treated samples were normalized to those in vehicle-treated samples and plotted as a function of the compound concentration.
[0055] Figure 5, referenced in Biological Example 4, shows the correction of SMN2 alternative splicing in Type 1 SMA patient fibroblasts treated with rising concentrations of Compound 6 (Figure 5a) and Compound 170 (Figure 5b) over a 24 hr period. The full length and Δ7 SMN2 mRNA were amplified using reverse transcription-end point PCR (RT-PCR) and PCR products were separated using agarose gel electrophoresis. The top and bottom bands correspond to the full length and Δ7 SMN2 mRNA respectively. The intensity of each band is proportional to the amount of RNA present in the sample.
[0056] Figure 6, referenced in Biological Example 5, shows the correction of SMN2 alternative splicing (in both the SMN2 gene and the hybrid mouse Smnl-SMN2 gene) in brain and muscle tissues in a C/C-allele SMA mouse model resulting from treatment for 10 days twice per day (BID) with 10 mg/kg of Compound 6 (Figure 6a) and Compound 170 (Figure 6b). The levels of full length and Δ7 SMN2 mRNA were quantified using RT-qPCR, the combined full length and Δ7 SMN2 mRNA quantity was set to 1, and fractional quantities of full length and Δ7 SMN2 were calculated.
[0057] Figure 7, referenced in Biological Example 6, shows the correction of SMN2 alternative splicing (in both the SMN2 gene and the hybrid mouse Smnl-SMN2 gene) in brain and muscle tissues in a C/C-allele SMA mouse model resulting from treatment for 10 days BTD with 10 mg/kg of Compound 6 (Figure 7a) and Compound 170 (Figure 7b). The full length and Δ7 SMN2 mRNA were amplified using RT-PCR. The PCR products were separated using agarose gel electrophoresis. The top and bottom bands correspond to the full length and Δ7 SMN2 mRNA, respectively. The intensity of each band is proportional to the amount of RNA present in the sample.
2017204248 22 Jun 2017 [0058] Figure 8, referenced in Biological Example 7, shows a dose dependent increase in Smn protein expression in SMA Type 1 human fibroblast cells treated over a 48 hour period with Compound 6 (Figure 8a) and Compound 170 (Figure 8b).
[0059] Figure 9, referenced in Biological Example 8, shows an increase in nuclear speckle counts (gems) in Type 1 SMA patient fibroblasts treated with Compound 6 (Figure 9a) and Compound 170 (Figure 9b) over a 48 hour period. Speckles were counted using fluorescence microscopy. The number of speckles in compound-treated samples was normalized to that in vehicle-treated samples and plotted as a function of the compound concentration.
[0060] Figure 10, referenced in Biological Example 9, shows an increase in Smn protein expression (black circles) in motor neurons generated from iPS cells generated from Type 1 SMA patient fibroblasts treated with Compound 6 (Figure 10). The level of Smn protein was quantified using Smn immuno staining and confocal fluorescence microscopy. The level of Smn protein in compound-treated samples was normalized to that in vehicle-treated samples and plotted as a function of the compound concentration.
[0061] Figure 11, referenced in Biological Example 11, show's increased Smn protein expression in brain, spinal cord, and muscle tissues in a C/C-allele SMA mouse model resulting from treatment for 10 days BID with 100 mg/kg of Compound 6 (Figure 1 la, for n = 10) and 10 mg/kg of Compound 170 (Figure 1 lb, for n = 5). The p value by ANOVA in each Figure is indicated with three stars (***) for p < 0.001.
[0062] Figure 12, referenced in Biological Example 12, show's a dose dependent increase in Smn protein expression in tissues in a neonatal Δ7 SMA mouse model resulting from treatment for 7 days once per day (QD) with Compound 6 (brain, Figure 12a; spinal cord, Figure 12b; muscle, Figure 12c; and skin, Figure 12d, for n = 6 to 9) and Compound 170 (brain, Figure 12e; spinal cord, Figure 12f; muscle, Figure 12g, for n = 7). The p value by ANOVA in each Figure is indicated with one star (*) for p < 0.05, two stars (**) for p < 0.01 and three stars (***) for p< 0.001.
[0063] Figure 13, referenced in Biological Example 13, show's differences in body weight in a neonatal Δ7 SMA mouse model resulting from treatment up to Postnatal Day (PND) 59 with Compound 6 (Figure 13a) and until PND 92 with Compound 170 (Figure 13b).
2017204248 22 Jun 2017 [0064] Figure 14, referenced in Biological Example 14, shows an improved righting reflex in a neonatal Δ7 SMA mouse model resulting from treatment with Compound 6 (Figure 14a) and Compound 170 (Figure 14b).
[0065] Figure 15, referenced in Biological Example 15, shows improved survival in a neonatal Δ7 SMA mouse model resulting from treatment with Compound 6 (Figure 15a) and Compound 170 (Figure 15b).
[0066] Figure 16, referenced in Biological Example 15, shows increased Smn protein expression in brain, spinal cord, and muscle tissues in a Δ7 SMA mouse model resulting from treatment with Compound 6 until PND 156 (Figure 16a) and with Compound 170 until PND 185 (Figure 16b) relative to vehicle treated and age-matched heterozygous mice, respectively.
[0067] Figure 17, referenced in Biological Example 16, shows a dose dependent increase in SMN1 minigene FL mRNA and a dose dependent decrease in SMN1 minigene Δ7 mRNA in HEK293H human cells treated over a 7 hour period with Compound 6 (Figure 17a) and Compound 170 (Figure 17b). The full length and Δ7 SMN1 minigene mRNA were each amplified using RT-PCR and the resulting PCR products were separated using agarose gel electrophoresis. The top and bottom bands correspond to the full length and Δ7 SMN1 minigene mRNA, respectively. The intensity of each band is proportional to the amount of RNA present in the sample.
DETAILED DESCRIPTION [0068] Provided herein are compounds of Formula (I):
Figure AU2017204248B2_D0002
O (I) [0069] or a form thereof, wherein:
[0070] wi and ws are independently C-Ra or N;
[0071] w2 is C-Rb or N;
[0072] w3, W4 and W7 are independently C-Ri, C-R2, C-Ra orN;
[0073] w6 is C-Ri, C-R2, C-Rc or N:
2017204248 22 Jun 2017 [0074] wherein one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [0075] when W3 is C-R,, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [0076] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [0077] when W4 is C-R,, then w2 is C-R2 and W3 is C-Ra or N and we is C-Rc or N; or, [0078] when W4 is C-R2, then w? is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N; and, [0079] wherein any one, two or three of wi, w2, W3, W4, W5, W6 and W7 may optionally be N; [0080] Ri is Ci-salkyl, amino, C,-salkyl-amino, (Ci-salky l)2-amino,
Ci-salkoxy-Ci-salkyl-amino, (Ci-8alkoxy-Ci-salkyl)2-amino, (C i-salkoxy-C 1 _salkyl)(C 1 _8alkyl)amino, amino-C 1 .salkyl, C1 -8alkyl-amino-C 1.8alkyl, (C i-8alkyl)2-amino-C 1.8alkyl, Ci-8alkoxy-Ci-8alkyl-amino-Ci-8alkyl, (Ci.8alkoxy-Ci.8alkyl)2-amino-Ci.8alkyl, (Ci_8alkoxy-C 1 -8alkyl)(C 1 _8alkyl)amino-C 1.8alkyl, amino-C 1 _8alkyl-amino, (amino-Ci.8alkyl)2-amino, (amino-Ci_8alkyl)(Ci-8alkyl)amino, Ci.8alkyl-amino-Ci.8alkyl-amino, (Ci.8alkyl-amino-Ci.8alkyl)2-amino, (Ci_8alkyl-amino-C 1 _8alkyl)(C 1 _8alkyl)amino, (C1 -salky l)2-amino-C 1 -salkyl-amino, [(C1 -salkyl)2-amino-C 1 _8alkyl](C 1 _8alkyl)amino, amino-C 1 _8alkoxy, C1 -8alkyl-amino-C 1 _8alkoxy, (C1 -salky l)2-amino-C 1 _8alkoxy,
C1 -8alkoxy-C 1 _8alkyl-amino-C 1 _8alkoxy, C1 _8alkoxy-C 1 -salkyl-amino-C 1 _8alkoxy, (Ci_8alkoxy-C 1 _8alkyl)(C 1 _8alkyl)amino-C 1 _8alkoxy, amino-C2-8alkenyl, Ci-8alkyl-amino-C2-8alkenyl, (Ci-8alkyl)2-amino-C2-8alkenyl, amino-C2-8alkynyl, Ci-8alkyl-amino-C2-8alkynyl, (Ci-8alkyl)2-amino-C2-8alkynyl, halo-Ci-8alkyl-amino, (halo-Ci-salkyl)2-amino, (halo-C]-8alkyl)(Ci-salkyl)amino, hydroxy-C 1 -salkyl, hydroxy-C 1 .salkoxy-C 1 -salkyl, hydroxy-C 1 -salkyl-amino, (hydroxy-Ci-8alkyl)2-amino, (hydroxy-Ci-8alkyl)(Ci-salkyl)amino, hydroxy-Ci-salkyl-amino-Ci-salkyl, (hydroxy-C |.8alkyl)2-amino-C|.xalkyl, (hydroxy-C 1 -salkyl)(C 1 _salkyl)amino-C 1 -salkyl, hydroxy-Ci-8alkyl-amino-Ci-salkoxy, (hydroxy-Ci-8all<yl)2-amino-C|-8alkoxy, (hydroxy-C 1 -salky 1)(C 1 -salky l)amino-C 1 -salkoxy, hydroxy-Ci-salkyl-amino-Ci-salkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino,
2017204248 22 Jun 2017 (hydro xy-C i .«alky 1 )2-am i no-C i _s a 1 k y 1 - amino, (hydro xy-C 1 .«alkyl-amino-C 1 -salkyl)(C i .«alky l)am i no, (hydro xy-C i -salkyl)(C i _salkyl)amino-C , .«alkyl-amino, [(hydro xy-C i .«alky I )2-am i no-C i .«alkyl] (C i .«alky I )am i no, [(hydroxy-Ci.8alkyl)(Ci.8alkyl)amino-Ci.8alkyl](Ci.salkyl)amino, heterocyclyl, heterocyclyl-Ci_8alkyl, hctcrocyclyl-C|.«alkoxy, heterocyclyl-amino, (heterocyclyl)(Ci.8alkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci.8alkyl)2-amino, (heterocyclyl-C i .salkyl)(C i .8alkyl)amino, heterocyclyl-C i .8alkyl-amino-C i .galkyl, (heterocyclyl-C i _8alkyl)2-amino-C i -salkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3-i4cycloalkyl, aryl-C].8alkyl-amino, (aryl-Ci-salkyl)2-amino, (aryl-Ci-8alkyl)(Ci_8alkyl)amino, aryl-Ci-8alkyl-amino-Ci_8alkyl, (aryl-Ci.salkyl)2-amino-Ci.salkyl, (aryl-C i .8alkyl)(C i .salkyl)amino-C i -salkyl, heteroaryl, heteroaryl-C i -salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, heteroaryl-Ci-salkyl-amino, (heteroaryl-Ci.salkyl)2-amino, (heteroaryl-Ci.«alkyl)(Ci_«alkyl)amino, heteroaryl-Ci-salkyl-amino-Ci-salkyl, (heteroaryl-C].8alkyl)2-amino-Ci-8alkyl or (heteroaryl-C i _salkyl)(C i .salkyl)amino-C i -salkyl;
[0081] wherein, each instance of heterocyclyl, C3_i4cycloalkyl, aryl and heteroaryl is optionally substituted with one, two or three R3 substituents and optionally, with one additional R4 substituent; or, [0082] wherein, each instance of heterocyclyl, C3_i4cycloalkyl, aryl and heteroaryl is optionally substituted with one, two, three or four R3 substituents;
[0083] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino;
[0084] wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with one, two or three R(, substituents and optionally, with one additional R7 substituent;
[0085] Ra is, in each instance, independently selected from hydrogen, halogen or Ci-salkyl;
[0086] Rb is hydrogen, halogen, Ci-salkyl or Ci-salkoxy;
2017204248 22 Jun 2017 [0087] Rc is hydrogen, halogen or Ci-salkyl;
[0088] R3 is, in each instance, independently selected from cyano, halogen, hydroxy, oxo, Cpgalkyl, halo-Ci-salkyl, Ci-salkyl-carbonyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-8alkoxy-Ci-8alkyl, Ci-salkoxy-carbonyl, amino, Ci-salkyl-amino, (Ci-salkyl)2-amino, amino-Ci-salkyl, Ci-salkyl-amino-Ci-salkyl, (C i-salkyl)2-amino-C i -salkyl, amino-C i -salkyl-amino, Ci.8alkyl-amino-Ci.8alkyl-amino, (Ci-salkyl-amino-Ci-salkylfi-amino, (Ci-8alkyl)2-amino-Ci-8alkyl-amino, [(Ci.8alkyl)2-amino-Ci-8alkyl]2-amino, (C i-salkyl-amino-C i -salkyl)(C i -salkyl)amino, [(Ci_8alkyl)2-amino-Ci.8alkyl](Ci_salkyl)amino, Ci-salkoxy-Ci-salkyl-amino, (Ci-8alkoxy-Ci.8alkyl)2-amino, (Ci-8alkoxy-Ci.8alkyl)(Ci-salkyl)amino, Ci_8alkyl-carbonyl-amino, Ci-salkoxy-carbonyl-amino, hydro xy-Ci-salkyl, hydroxy-C 1.8alkoxy-C i -salkyl, hydroxy-C i .8alkyl-amino, (hydroxy-Ci-salkyl)2-amino or (hydroxy-Ci-8alkyl)(Ci-salkyl)amino;
[0089] R4 is C3_i4cycloalkyl, C3-i4cycloalkyl-Ci-salkyl, C3-i4cycloalkyl-amino, aryl-Ci.salkyl, aryl-Ci-salkoxy-carbonyl, aryl-sulfonyloxy-Ci.salkyl, heterocyclyl or heterocyclyl-C|.salkyl; wherein, each instance of Cs-ucycloalkyl, aryl and heterocyclyl is optionally substituted with one, two or three R5 substituents;
[0090] R5 is, in each instance, independently selected from halogen, hydroxy, cyano, nitro, Ci-salkyl, halo-Ci-salkyl, Ci-salkoxy, halo-Ci-salkoxy, amino, Ci-salkyl-amino, (Ci-salkyl)2-amino or Ci-salkyl-thio;
[0091] R(, is, in each instance, independently selected from halogen, hydroxy, cyano, nitro,
Ci-salkyl, C2-salkenyl, halo-Ci-salkyl, hydroxy-Ci-salkyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-salkoxy-Ci-salkyl, amino, Ci-salkyl-amino, (Ci-salkyl)2-amino or Ci-salkyl-thio; and, [0092] R7 is C3-i4cycloalkyl, C3-i4cycloalkyl-oxy, aryl, heterocyclyl or hctcroaryl.
EMBODIMENTS [0093] In one embodiment of a compound of Formula (I), wj is C-Ra.
[0094] In another embodiment of a compound of Formula (I), wi is N. [0095] In one embodiment of a compound of Formula (I), w2 is C-Rb.
2017204248 22 Jun 2017 [0096] [0097] [0098] [0099] [00100] [00101] [00102] [00103] [00104] [00105] [00106] [00107] [00108] [00109] [00110] [00111] [00112] [00113] [00114] [00115] [00116] [00117] [00118] [00119] [00120]
In another embodiment of a compound of Formula (I), W2 is N.
In one embodiment of a compound of Formula (1), w3 is C-Ra.
In another embodiment of a compound of Formula (I), w3 is N.
In one embodiment of a compound of Formula (I), W4 is C-Ra.
In another embodiment of a compound of Formula (I), W4 is N.
In one embodiment of a compound of Formula (I), W5 is C-Ra.
In another embodiment of a compound of Formula (I), W5 is N.
In one embodiment of a compound of Formula (I), W6 is C-Rc.
In another embodiment of a compound of Formula (I), W6 is N.
In one embodiment of a compound of Formula (I), W7 is C-Ra.
In another embodiment of a compound of Formula (I), w- is N.
In one embodiment of a compound of Formula (I), w3 is C-Ri and W6 is C-R2.
In another embodiment of a compound of Formula (I), w3 is C-R2 and W6 is C-Ri.
In one embodiment of a compound of Formula (I), W4 is C-Ri and W7 is C-R2.
In another embodiment of a compound of Formula (I), W4 is C-R2 and W7 is C-Ri.
In one embodiment of a compound of Formula (I), w3 is C-Ri, W6 is C-R2 and wi, W4, W5 and W7 are independently C-Ra or N and W2 is C-Rh or N.
In another embodiment of a compound of Formula (I), w3 is C-R2, W6 is C-Ri and wi, W4, W5 and W7 are independently C-Ra or N and W2 is C-Rb or N.
In one embodiment of a compound of Formula (I), W4 is C-Ri, W7 is C-R2, Wi, w3 and W5 are independently C-Ra or N, W2 is C-Rb or N and W6 is C-Rc or N.
In another embodiment of a compound of Formula (I), W4 is C-R2, W7 is C-Ri, Wi, w3 and W5 are independently C-Ra or N, W2 is C-Rb or N and W6 is C-Rc or N.
In one embodiment of a compound of Formula (I), Wi and w2 are N.
Tn one embodiment of a compound of Formula (I), W1 and w3 are N.
In one embodiment of a compound of Formula (I), W1 and W4 arc N.
In one embodiment of a compound of Formula (I), W1 and w5 are N.
In one embodiment of a compound of Formula (I), W1 and W6 are N.
In one embodiment of a compound of Formula (I), WI and W7 are N.
2017204248 22 Jun 2017 [00121] In one embodiment of a compound of Formula (I), [00122] Ri is Ci-salkyl, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino,
Ci-salkoxy-Ci-salkyl-amino, (Ci-salkoxy-Ci-salkylL-amino, (C i-salkoxy-C i -salkyl)(C i -salkyl)amino, amino-C i -salkyl, C i -salkyl-amino-C i -salkyl, (C i-salkylfr-amino-C i -salkyl, Ci-salkoxy-Ci-salkyl-amino-Ci-salkyl, (Ci-salkoxy-Ci-salkylfr-amino-Ci-salkyl, (Ci-salkoxy-C 1 -salkyl)(C,-salkyl)amino-C 1 -salkyl, amino-C 1 -salkyl-amino, (amino-Ci-8alkyl)2-amino, (amino-Ci-8alkyl)(Ci-salkyl)amino, Ci-8alkyl-amino-Ci_8alkyl-amino, (Ci-salkyl-amino-Ci-salkylfr-amino, (Ci-salkyl-amino-Ci_salkyl)(Ci_salkyl)amino, (Ci_salkyl)2-amino-Ci-salkyl-amino, [(Ci-8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino, amino-Ci-salkoxy, C i -salkyl-amino-C i .galkoxy, (C1 -salkylfr-amino-C 1 -salkoxy,
C i -salkoxy-C i -salkyl-amino-C, -salkoxy, (C i _salkoxy-C i .salkyfh-amino-C i -salkoxy, (Ci-salkoxy-Ci-salkyl)(Ci-salkyl)amino-Ci-salkoxy, amino-C2-salkenyl, Ci-8alkyl-amino-C2-8alkenyl, (C|-salkyl)2-amino-C2-salkenyl, amino-C2-salkynyl, Ci-8alkyl-amino-C2-8alkynyl, (Ci-salkyl)2-amino-C2-salkynyl, halo-Ci -salkyl-amino, (halo-C i -salkylfr-amino, (halo-C i-salkyl)(C i -salkyl)amino, hydroxy-Ci-salkyl, hydroxy-Ci-8alkoxy-Ci-salkyl, hydroxy-Ci-salkyl-amino, (hydroxy-Ci-8alkyl)2-amino, (hydroxy-Ci-salkyl)(Ci-salkyl)amino, hydroxy-Ci-galkyl-amino-Ci-salkyl, (hydroxy-Ci-salkylfr-amino-Ci-salkyl, (hydroxy-C i -salkyl)(C i -salkyl)amino-C, -salkyl, hydroxy-Ci-salkyl-amino-Ci-salkoxy, (hydroxy-Ci-salkvlh-amino-Ci-salkoxy, (hydroxy-C i -salkyl)(C i -8alkyl)amino-C, -salkoxy, hydroxy-Ci-salkyl-amino-Ci-salkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino, (hydroxy-C i -salkyl )2-am i no-C i -salkyl-amino, (hydroxy-C i -salkyl-amino-C i -salkyl)(C i -salkyl)amino, (hydroxy-C i -salkyl)(C i _salkyl)amino-C, -salkyl-amino, [(hydroxy-C i _salky l)2-amino-C i -salkyl] (C i _salky l)amino, [(hydroxy-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8alkyl](Ci-salkyl)amino, heterocyclyl, heterocyclyl-Ci-salkyl, heterocyclyl-Ci.salkoxy, heterocyclyl-amino,
2017204248 22 Jun 2017 (heterocyclyl)(Ci_8alkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-8alkyl)2-amino, (heterocyclyl-C i -salkyl)(C i -salkyl)amino, heterocyclyl-C i -salkyl-amino-C i -8alkyl, (heterocyclyl-C i .salkyl)2-amino-C i -salkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-salkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3_i4cycloalkyl, aryl-C’i-salkyl-amino, (aryl-C i-salkyl)2-amino, (aryl-Ci^alkyl)(Ci^alkyl)amino, aryl-C|.salkyl-arriino-C|.«alkyl, (aryl-C i-salkykb-amino-C’i-salkyl, (aryl-Ci-salkyl)(Ci_salkyl)amino-Ci-salkyl, heteroaryl, heteroaryl-Ci-salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, heteroaryl-Ci-salkyl-amino, (heteroaryl-C i -salkyl)2-amino, (hetero aryl-C i _salkyl)(C i -salkyl)amino, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (heteroaryl-Ci-8alkyl)2-amino-Ci-salkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3-i4cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents.
[00123] In another embodiment of a compound of Formula (I), [00124] Ri is amino, (Ci-salkyl)2-amino, Ci-salkoxy-Ci-salkyl-amino, (Ci-8alkoxy-Ci-8alkyl)2-amino, amino-Ci.salkyl, Ci-salkyl-amino-Ci.salkyl, (Ci-8alkyl)2-amino-Ci-salkyl, Ci_salkoxy-Ci-salkyl-amino-Ci-salkyl, (C i-salkoxy-C i _8alkyl)2-amino-C i -salkyl, (C i-salkoxy-C i -8alkyl)(C, -salkyl)amino-C i -salkyl, amino-C i -salkyl-amino, (amino-Ci-8alkyl)2-amino, (amino-Ci-8alkyl)(Ci-salkyl)amino, Ci-galkyl-amino-Ci-salkyl-amino, (C|-salkyl-amino-Ci-salkyl b-amino, (Cι-salkyl-amino-Ci-salkyl)(Ci-salkyl)amino, (Ci_salkyl)2-amino-Ci-salkyl-amino, [(Ci-8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino, amino-Ci-salkoxy, C1 -salkyl-amino-Ci-salkoxy, (Ci-8alkyl)2-amino-Ci-salkoxy, C1 -salkoxy-Ci-salkyl-amino-Ci-salkoxy, (Ci-salkoxy-Ci.8alkyl)2-amino-Ci-salkoxy, (Ci-salkoxy-Ci-8alkyl)(C,-salkyl)amino-Ci-salkoxy, amino-C2-8alkenyl, Ci-8alkyl-amino-C2-8alkenyl, (Ci-salkyl)2-amino-C2-salkenyl, amino-C2-salkynyl, Ci-salkyl-amino-C2-8alkynyl, (Ci-salkyl)2-amino-C2-salkynyl, halo-Ci-8alkyl-amino, (halo-Ci-salkyl)2-amino, (halo-Ci-salkyl)(Ci-salkyl)amino,
2017204248 22 Jun 2017 hydroxy-Ci_8alkyl, hydroxy-Ci_8alkoxy-Ci_8alkyl, hydroxy-Ci.salkyl-amino, (hydroxy-C i-8alkyl)2-amino, (hydroxy-Ci.8alkylXCi.8alkyl)amino, hydroxy-Cj-salkyl-amino-Cj.salkyl, (hydroxy-Cj.salkyl)2-amino-Cj-salkyl, (hydroxy-C i _8alkyl)(C i _8alkyl)amino-C i _8alkyl, hydroxy-Ci-8alkyl-amino-Ci-8alkoxy, (hydroxy-C].8alkyl)2-amino-Ci-8alkoxy, (hydroxy-C i _8alkyl)(C i _8alkyl)amino-C i _8alkoxy, hydroxy-Ci-8alkyl-amino-Ci-8alkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino, (hydroxy-C i _8alkyl)2-amino-C i _8alkyl-amino, (hydroxy-C i _8alkyl-amino-C i _8alkyl)(C, _8alkyl)amino, (hydroxy-C i _8alkyl)(C i _8alkyl)amino-C i _8alkyl- amino, [(hydroxy-C 1 _8alkyl)2-amino-C 1 _8 alky 1] (C1 _8alkyl)amino, [(hydroxy-Ci-salkyl)(Ci-8alkyl)amino-Ci.8alkyl](Ci-8alkyl)amino, heterocyclyl, heterocyclyl-Ci_8alkyl, heterocyclyl-Ci_8alkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-8alkyl)amino, heterocyclyl-amino-Ci.8alkyl, heterocyclyl-Ci_8alkyl-amino, (heterocyclyl-Ci_8alkyl)2-amino, (heterocyclyl-Ci _8alkyl)(C i _8alkyl)amino, heterocyclyl-C i _8alkyl-amino-Ci .8alkyl, (heterocyclyl-C i .8alkyl)2-amino-C i .8alkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3_i4cycloalkyl, aryl-Ci_8alkyl-amino, (aryl-Ci.8alkyl)2-amino, (aryl-Ci-8alkyl)(Ci-8alkyl)amino, aryl-C].8alkyl-amino-Ci.8alkyl, (aryl-Ci_8alkyl)2-amino-Ci.8alkyl, (aryl-Ci_8alkyl)(Ci_8alkyl)amino-Ci-8alkyl, heteroaryl, heteroaryl-Ci-8alkyl, heteroaryl-Ci_8alkoxy, heteroaryl-Ci_8alkyl-amino, (heteroaryl-Ci_8alkyl)2-amino, (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino, heteroaryl-Ci.8alkyl-amino-Ci_8alkyl, (hetero aryl-C i _8alkyl)2-amino-C i _8alkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3_i4cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents.
2017204248 22 Jun 2017 [00125] In another embodiment of a compound of Formula (I), [00126] Ri is Ci-salkyl, amino, C,-salkyl-amino, (Ci-salky l)2-amino, Ci-salkoxy-Ci-salkyl-amino, (Ci-salkoxy-Ci-salkyl)2-amino, (C i-salkoxy-C i -salky 1)(C i -salky l)amino, amino-C i -salkyl, Ci-salkyl-amino-Ci-salkyl, (C i-salkyl)2-amino-Ci-salkyl, Ci-salkoxy-Ci-salkyl-amino-Ci-salkyl, (Ci-salkoxy-Ci-salkyfh-amino-Ci-salkyl, (Ci-salkoxy-C 1 -salkyl)(Ci-salkyl)amino-C 1 -salkyl, amino-C 1 -salkyl-amino, (amino-Ci-8alkyl)2-amino, (amino-Ci-8alkyl)(Ci-salkyl)amino, Ci-8alkyl-amino-Ci_8alkyl-amino, (Ci-salkyl-amino-Ci-salkylfr-amino, (Ci-salkyl-amino-Ci_salkyl)(Ci_salkyl)amino, (Ci_saIkyI h-amino-Ci-salkyl-amino, [(Ci-8alkyl)2-amino-Ci.8alkyl](Ci-8alkyl)amino, amino-Ci-salkoxy, C i -salkyl-amino-C i .galkoxy, (C1 -salky lfi-amino-C 1 -salkoxy,
C i -salkoxy-C i -salkyl-amino-C, -salkoxy, (C i _salkoxy-C i .salkyl)2-amino-C i -salkoxy, (Ci-salkoxy-Ci-salkyl)(Ci-salkyl)amino-Ci-salkoxy, amino-C2-salkenyl, Ci-8alkyl-amino-C2-8alkenyl, (Ci-salkyl)2-amino-C2-salkenyl, amino-C2-salkynyl, Ci-8alkyl-amino-C2-8alkynyl, (Ci-salkyl)2-amino-C2-salkynyl, halo-Ci -salkyl-amino, (halo-C i -salkyl)2-amino, (halo-C i-salkyl)(C i -salkyl)amino, hydroxy-Ci-salkyl, hydroxy-Ci-8alkoxy-Ci-salkyl, hydroxy-Ci-salkyl-amino, (hydroxy-Ci-8alkyl)2-amino, (hydroxy-Ci-salkyl)(Ci-salkyl)amino, hydroxy-Ci-salkyl-amino-Ci-salkyl, (hydroxy-Ci-salkyfh-amino-Ci-salkyl, (hydroxy-C i -salkyl)(C i -salkyl)amino-C, -salkyl, hydroxy-Ci-salkyl-amino-Ci-salkoxy, (hydroxy-Ci-salkyfh-amino-Ci-salkoxy, (hydroxy-C i -salkyl)(C i -8alkyl)amino-C, -salkoxy, hydroxy-Ci-salkyl-amino-Ci-salkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino, (hydroxy-C i -salky (h-amino-C i -salkyl-amino, (hydroxy-C i -salkyl-amino-C i -salkyl)(C i -salkyl)amino, (hydroxy-C i -salkyl)(C i _salkyl)amino-C, -salkyl-amino, [(hydroxy-C i -salkyl)2-amino-C i -salkyl] (C i _salkyl)amino or [(hydroxy-C i -salky 1)(C i -salky l)amino-C i .salkyl] (C i -salkyl)amino.
2017204248 22 Jun 2017 [00127] In another embodiment of a compound of Formula (I), [00128] Ri is heterocyclyl, hctcrocyclyl-Cj .salkyl, helerocyclyl-Cj ^alkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-salkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-salkyl)2-amino, (heterocyclyl-Ci-salkyl)(Ci-salkyl)amino, heterocyclyl-Ci_8alkyl-amino-Ci-8alkyl, (heterocyclyl-Ci-8alkyl)2-amino-Ci.salkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3_i4cycloalkyl, aryl-Ci-8alkyl-amino, (aryl-C i-salkylfr-amino, (aryl-Ci-8alkyl)(Ci-8alkyl)amino, aryl-Ci_8alkyl-amino-Ci_8alkyl, (aryl-Ci_8alkyl)2-amino-Ci_salkyl, (aryl-Ci-salkyl)(Ci -salkyl)amino-Ci-salkyl, heteroaryl, heteroaryl-Ci-salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, heteroaryl-Ci-salkyl-amino, (heteroaryl-C i -salkyl fr-am i no, (hetero aryl-C i .salkyl)(C i -salkyl )am i no, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (hctcroaryl-Cj.salkyl)2-amino-Cj.salkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3-i4Cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents.
[00129] In another embodiment of a compound of Formula (I), [00130] Ri is heterocyclyl, heterocyclyl-Ci-salkyl, heterocyclyl-Ci-salkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-salkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-8alkyl)2-amino, (heterocyclyl-Ci-salkyl)(Ci-8alkyl)amino, heterocyclyl-Ci-salkyl-amino-Ci-salkyl, (heterocyclyl-Ci-salkyl)2-arnino-Ci.salkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl or heterocyclyl-carbonyl-oxy; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00131] In another embodiment of a compound of Formula (I), Ri is heterocyclyl optionally substituted with R3 and R4 substituents.
[00132] In another embodiment of a compound of Formula (I), Ri is C3-i4Cycloalkyl optionally substituted with R3 and R4 substituents.
2017204248 22 Jun 2017 [00133] In another embodiment of a compound of Formula (I), [00134] Ri is aryl-Ci-salkyl-amino, (aryl-Ci.salkyl)2-amino, (aryl-Ci-8alkyl)(Ci-8alkyl)amino, aryl-Ci-8alkyl-amino-Ci-8alkyl, (aryl-Ci-salkyl)2-amino-Ci-8alkyl or (aryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci_8alkyl; wherein, each instance of aryl is optionally substituted with R3 and R4 substituents.
[00135] In another embodiment of a compound of Formula (I), Ri is aryl-Ci-salkyl-amino optionally substituted with R3 and R4 substituents.
[00136] In another embodiment of a compound of Formula (I), [00137] Ri is heteroaryl, heteroaryl-Ci-salkyl, heteroaryl-Ci-salkoxy, hetero ary 1-amino, hetero aryl- C1 _salky 1-amino, (heteroaryl-C 1 -salkyl)2-amino ,(heteroaryl-C 1 _8alkyl)(C 1 -salky 1 )am ino, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (heteroaryl-Ci_8alkyl)2-amino-Ci.8alkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3_i4cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents.
[00138] In another embodiment of a compound of Formula (I), Ri is heteroaryl optionally substituted with R3 and R4 substituents.
[00139] In one embodiment of a compound of Formula (I), [00140] Ri is heterocyclyl selected from azetidinyl, tetrahydrofuranyl, pyrrolidinyl, piperidinyl, piperazinyl, 1,4-diazepanyl, 1,2,5,6-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl, hcxahydropyrrolo[3,4-/)]pyrrol-(l//)-yl, (3aS,6a5)-hexahydropyrrolo[3,4-h]pyrrol-(l/7)-yl, (3aR,6a7?)-hexahydropyrrolo[3,4-b]pyrrol-( 1 //)-yl, hexahydropyrrolo [3,4-6]pyrrol-( 2//)-yl, (3atS',6a1S)-hexahydropyrrolo[3,4-6]pyrrol-(277)-yl, hexahydropyrrolo [3,4-c]pyrro 1-( 1 //)-yl, (3aR,6a5)-hexahydropyrrolo[3,4-c]pyrrol-(lF/)-yl, octahydro-5//-pyrrolo[3,2-c']pyridinyl, octahydro-6/7-pyrrolo[3,4-h]pyridinyl, (4a/?,7a/?)-octahydro-6//-pyrrolo[3,4-/)]pyridinyl, (4aS',7alS)-octahydro-6/7-pyrrolo[3,4-b]pyridinyl, hexahydropyrrolo [ 1,2-«]pyrazin-(2//)-onc,
2017204248 22 Jun 2017 hexahydropyrrolo [ 1,2-a]pyrazin-( l/7)-yl, (77?,8a5’)-hexahydropyrrolo[l,2-a]pyrazin-(l//)-yl, (8a5)-hexahydropyrrolo[l,2-a]pyrazin-(l//)-yl, (8aR)-hexahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, (8a5)-octahydropyrrolo[l,2-a]pyrazin-(l//)-yl, (8aR)-octahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, octahydro-2H-pyrido[l,2-a]pyrazinyl, 3-azabicyclo[3.1.0]hexyl, (17?,5S)-3-azabicyclo[3.1.0]hexyl, 8-azabicyclo[3.2.1]octyl, (17?,55)-8-azabicyclo[3.2.1]octyl, 8-azabicyclo[3.2.1]oct-2-enyl, (IR,5.S')-8-azabicyclo[3.2. l]ocl-2-cnyl, 9-azabicyclo[3.3.1]nonyl, (17?,5>S)-9-azabicyclo[3.3.1]nonyl, 2,5-diazabicyclo[2.2.1]heptyl, (lS,45)-2,5-diazabicyclo[2.2.1]heptyl, 2,5-diazabicyclo[2.2.2]octyl,
3.8- diazabicyclo[3.2.1]octyl, (17?,55)-3,8-diazabicyclo[3.2.1]octyl, l,4-diazabicyclo[3.2.2]nonyl, azaspiro[3.3]heptyl, 2,6-diazaspiro[3.3]heptyl, 2,7diazaspiro[3.5]nonyl, 5,8-diazaspiro[3.5]nonyl, 2,7-diazaspiro[4.4]nonyl or
6.9- diazaspiro[4.5]decyl; wherein, each instance of hetero eye lyl is optionally substituted with Rs and R4 substituents.
[00141] In another embodiment of a compound of Formula (I), [00142] Ri is heterocyclyl selected from azetidin-l-yl, tetrahydrofiiran-3-yl, pyrrolidin-l-yl, piperidin-l-yl, piperidin-4-yl, piperazin-1-yl, 1,4-diazepan-l-yl,
1,2,5,6-tetrahydropyridin-5-yl, 1,2,3,6-tetrahydropyridin-4-yl, hexahydropyrrolo [3,4-b]pyrrol-1 (2//)-y 1, (3a5',6a1S)-hexahydropyrrolo[3,4-0]pyrrol-l(2/Z)-yl, (3a5',6a5)-hexahydropyrrolo[3,4-0]pyrrol-5(l/Z)-yl, (3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(l/7)-yl, hexahydropyrrolo [3,4-c]pyrro 1-2( 17/)-yl, (3aR,6a5)-hexahydropyrrolo[3,4-c]pyrrol-2(l/7)-yl, octahydro-5/7pyrrolo[3,2-c]pyridin-5-yl, octahydro-6/f-pyrrolo[3,4-Z)]pyridin-6-yl, (4aR,7aR)-octahydro-6//-pyrrolo[3,4-ri]pyridin-6-yl, (4aS',7alS)-octahydro-6/7-pyrrolo[3,4-b]pyridin-6-yl, hexahydropyrrolo [ 1,2-«]pyrazin-6(2//)-onc,
2017204248 22 Jun 2017 hexahydropyrrolo [ 1,2-a]pyrazin-2( l//)-yl, (7R,8a5)-hexahydropyrrolo[l,2-a]pyrazin-2(l//)-yl, (8a5)-hexahydropyrrolo[l,2-a]pyrazin-2(l/7)-yl, (8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(177)-yl, (8a5)-octahydropyrrolo[l,2-a]pyrazin-2(l/f)-yl, (8a7?)-octahydropyrrolo[l,2-a]pyrazin-2(l//)-yl, octahydro-2H-pyrido[l,2-u]pyrazin-2-yl, 3-azabicyclo[3.1.0]hex-3-yl, 8-azabicyclo[3.2.1]oct-3-yl, (lR,5S)-8-azabicyclo[3.2.1]oct-3-yl,
8- azabicyclo[3.2.1]oct-2-en-3-yl, (17?,55)-8-azabicyclo[3.2.1]oct-2-en-3-yl,
9- azabicyclo[3.3.1]non-3-yl, (lR,55)-9-azabicyclo[3.3.1]non-3-yl,
2.5- diazabicyclo[2.2.1]hept-2-yl, (15,45)-2,5-diazabicyclo[2.2.1]hept-2-yl,
2.5- diazabicyclo[2.2.2]oct-2-yl, 3,8-diazabicyclo[3.2.1]oct-3-yl, (17?,5S)-3,8-diazabicyclo[3.2.1]oct-3-yl, l,4-diazabicyclo[3.2.2]non-4-yl, azaspiro[3.3]hept-2-yl, 2,6-diazaspiro[3.3]hept-2-yl, 2,7-diazaspiro[3.5]non-7-yl,
5.8- diazaspiro[3.5]non-8-yl, 2,7-diazaspiro[4.4]non-2-yl or
6.9- diazaspiro[4.5]dec-9-yl; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00143] In another embodiment of a compound of Formula (I), [00144] Ri is substituted heterocyclyl selected from 4-methyl-l,4-diazepan-l-yl, (3a5,6a5)-l-methylhexahydropyrrolo[3,4-0]pyrrol-5(177)-yl, (3aS,6a5)-5-methylhexahydropyrrolo[3,4-0]pyrrol-l(2/Z)-yl, (3 aR,6aR)-1 -methylhexahydropyrro lo [3, 4 - A ] p y r ro 1 - 5 (1 //)-y 1, (3aR,6a5)-5-methylhexahydropyrrolo[3,4-c]pyrrol-2(l/f)-yl, (3aR,6a5)-5-(2-hydroxyethyl)hexahydropyrrolo[3,4-c]pyrrol-2(177)-yl, (3a7?,6a5)-5-(propan-2-yl)hexahydropyrrolo[3,4-c]pyrrol-2(177)-yl, (3a7?,6a5)-5-cthylhcxahydropyrrolo[3,4-c]pyrrol-2(l/Z)-yl, (4a/?,7a/?)-l-mcthyloctahydro-6//-pyrrolo[3,4-/ripyridin-6-yl, (4aR,7a7?)-l-ethyloctahydro-6/7-pyrrolo[3,4-A]pyridin-6-yl, (4aR,7a7?)-l-(2-hydroxyethyl)octahydro-677-pyrrolo[3,4-h]pyridin-6-yl, (4a5,7aS)-1 -methyloctahydro-6/7-pyrrolo [3,4-h]pyridin-6-yl, (4aS,7a5)-l-(2-hydroxyethyl)octahydro-6/f-pyrrolo[3,4-0]pyridin-6-yl,
2017204248 22 Jun 2017 (77?,8a5)-7-hydroxyhexahydropyrrolo[l,2-a]pyrazin-2(17Z)-yl, (8a5)-8a-methyloctahydropynOlo [ 1,2-a]pyrazin-2( l//)-yl, (8a7?)-8a-methyloctahydropyrrolo[ 1,2-tz]pyrazin-2( 17T)-yl, (17?,55,6s)-6-(dimethylamino)-3-azabicyclo[3.1.0]hex-3-yl, (17?,55)-8-methyl-8-azabicyclo [3.2.1 ]oct-3-yl, 9-methyl-9-azabicyclo[3.3.1]non-3-yl, (3-exo)-9-methyl-9-azabicyclo[3.3.1]non-3-yl, (17?,55)-9-methyl-9-azabicyclo [3.3.1 ]non-3-yl, (15.45) -5 -methy 1-2,5 -diazabicyclo[2.2.1 ]hept-2-yl or (15.45) -5-ethyl-2,5-diazabicyclo[2.2.1]hept-2-yl.
[00145] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-C i -salkyl, wherein heterocyclyl is selected from morpholinyl, piperidinyl, piperazinyl, imidazolyl or pyrrolidinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00146] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-Ci-salkyl selected from morpholin-4-yl-methyl, morpholin-4-yl-ethyl, morpholin-4-yl-propyl, piperidin-l-yl-methyl, piperazin- 1-yl-methyl, piperazin-1-yl-ethyl, piperazin-1-yl-propyl, piperazin-1-yl-butyl, imidazol-1-yl-methyl, imidazol-1-yl-ethyl, imidazol-1-yl-propyl, imidazol-l-yl-butyl, pyrro lidin-1-yl-methyl, pyrrolidin-1-yl-ethyl, pyrro lidin-1-yl-propyl or pyrrolidin-1-yl-butyl; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00147] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-C i-salkoxy, wherein heterocyclyl is selected from pyrrolidinyl, piperidinyl or morpholinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00148] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-Ci-salkoxy selected from pyrrolidin-2-yl-methoxy, pyrrolidin-2-yl-cthoxy, pyrrolidin-1-yl-methoxy, pyrrolidin-l-yl-ethoxy, piperidin-l-yl-methoxy, piperidin-l-yl-ethoxy, morpholin-4-yl-methoxy or morpholin-4-yl-ethoxy; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00149] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-amino, wherein heterocyclyl is selected from azetidinyl, pyrrolidinyl, piperidinyl, 9-azabicyclo[3.3.1]nonyl or
2017204248 22 Jun 2017 (15,55)-9-azabicyclo[3.3.1]nonyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00150] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-amino selected from azetidin-3-yl-amino, pyrrolidin-3-yl-amino, piperidin-4-yl-amino, 9-azabicyclo[3.3.1]non-3-yl-amino, (15,55)-9-azabicyclo[3.3.1]non-3-yl-amino, 9-methyl-9-azabicyclo[3.3.1 ]non-3-yl-amino, (3-exo)-9-methyl-9-azabicyclo[3.3.l]non-3-yl-amino or (17?,5S)-9-methyl-9azabicyclo[3.3.1]non-3-yl-amino; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00151] In one embodiment of a compound of Formula (I), Ri is (heterocyclyl)(Ci-8alkyl)amino, wherein heterocyclyl is selected from pyrrolidinyl or piperidinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00152] In another embodiment of a compound of Formula (I), Ri is (heterocyclyl)(Ci-8alkyl)amino selected from (pyrrolidin-3-yl)(methyl)amino or (piperidin-4-yl)(methyl)amino; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00153] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-amino-Ci-8alkyl, wherein heterocyclyl is selected from tetrahydro furanyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00154] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-amino-Ci-8alkyl, selected from 3-(tetrahydro furan-3-yl-amino)propyl; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00155] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-Ci-8alkyl-amino-Ci_8alkyl, wherein heterocyclyl is selected from tetrahydrofuranyl, thienyl or pyridinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00156] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-Ci-salkyl-amino-Ci-salkyl, selected from 3-[(tetrahydrofuran-2ylmethyl)amino]propyl, 3-[(thienyl-3-ylmelhyl)amino]propyl, 3-[(pyridin-2ylmethyl)amino]propyl or 3-[(pyridin-4-ylmethyl)amino]propyl; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
2017204248 22 Jun 2017 [00157] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-oxy, wherein heterocyclyl is selected frompyrrolidinyl or piperidinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00158] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-oxy selected frompyrrolidin-3-yl-oxy or piperidin-4-yl-oxy; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00159] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-carbonyl, wherein heterocyclyl is selected from piperazinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00160] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-carbonyl selected from piperazin-1-yl-carbonyl; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00161] In one embodiment of a compound of Formula (I), Ri is heterocyclyl-carbonyl-oxy, wherein heterocyclyl is selected from piperazinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00162] In another embodiment of a compound of Formula (I), Ri is heterocyclyl-carbonyl-oxy selected from piperazin- 1-yl-carbonyl-oxy; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents.
[00163] In one embodiment of a compound of Formula (I), Ri is C3_i4cycloalkyl selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexenyl or cycloheptyl; wherein, each instance of C3_i4cycloalkyl is optionally substituted with R3 and R4 substituents.
[00164] In another embodiment of a compound of Formula (I), Ri is C3_scycloalkyl selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexenyl or cycloheptyl; wherein, each instance of C3-scycloalkyl is optionally substituted with R3 and R4 substituents.
[00165] In one embodiment of a compound of Formula (1), Ri is aryl-Ci_8alkyl-amino-Ci-8alkyl, wherein aryl is selected from phenyl; and, wherein, each instance of aryl is optionally substituted with R3 and R4 substituents.
[00166] In another embodiment of a compound of Formula (I), Ri is aryl-Ci_8alkyl-amino-Ci-8alkyl selected from 3-(benzylamino)propyl; wherein, each instance of aryl is optionally substituted with R3 and R4 substituents.
2017204248 22 Jun 2017 [00167] In one embodiment of a compound of Formula (I), Ri is heteroaryl, wherein heteroaryl is selected from pyridinyl; and, wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents.
[00168] In another embodiment of a compound of Formula (I), Ri is heteroaryl selected from pyridin-4-yl; wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents.
[00169] In one embodiment of a compound of Formula (I), Ri is heteroaryl-Ci-salkyl, wherein heteroaryl is selected from \H-imidazolyl; and, wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents.
[00170] In another embodiment of a compound of Formula (I), Ri is heteroaryl-Ci-salkyl selected from l//-imidazol-l-yl-mcthyl; wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents.
[00171] In one embodiment of a compound of Formula (I), Ri is (heteroaryl-Ci_8alkyl)(Ci-8alkyl)amino, wherein heteroaryl is selected from pyridinyl; and, wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents. [00172] In another embodiment of a compound of Formula (I), Ri is (heteroaryl-C|.8alkyl)(Ci-salkyl)amino selected from (pyridin-3-ylmethyl)(methyl)amino; wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents. [00173] In one embodiment of a compound of Formula (I), Ri is heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, wherein heteroaryl is selected from thienyl or pyridinyl; and, wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents. [00174] In another embodiment of a compound of Formula (I), Ri is heteroaryl-Ci-salkyl-amino-Ci-salkyl selected from thien-3-yl-methyl-amino-propyl, pyridin-2-yl-methyl-amino-propyl, pyridin-3-yl-methyl-amino-propyl or pyridin-4-yl-methyl-amino-propyl; wherein, each instance of heteroaryl is optionally substituted with R3 and R4 substituents.
[00175] In one embodiment of a compound of Formula (I), R3 is selected from cyano, halogen, hydroxy, oxo, Ci-salkyl, halo-Ci-salkyl, Ci-galkyl-carbonyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-salkoxy-Ci-salkyl, Ci-salkoxy-carbonyl, amino, Ci-salkyl-amino, (Ci-salkyfh-amino, amino-Ci-salkyl, Ci-salkyl-amino-Ci-salkyl, (Ci-salkyl^-amino-Ci-galkyl, amino-Ci-salkyl-amino, Ci-8alkyl-amino-Ci-8alkyl-amino, (Ci-salkyl^-amino-Ci-salkyl-amino,
2017204248 22 Jun 2017
Ci-8alkoxy-Ci-8alkyl-amino, Cj.salkyl-carbonyl-amino, Ci_8alkoxy-carbonyl-amino, hydroxy-Ci-8alkyl, hydroxy-Ci.8alkoxy-Ci_8alkyl, hydroxy-Ci_8alkyl-amino, (hydroxy-Ci_8alkyl)2-amino or (hydroxy-Ci_8alkyl)(Ci.8alkyl)amino.
[00176] In another embodiment of a compound of Formula (I), R3 is selected from cyano, halogen, hydroxy, oxo, Ci_8alkyl, halo-Ci_8alkyl, Ci_8alkoxy, C].8alkoxy-Ci.8alkyl, Ci-8alkoxy-carbonyl, amino, Ci_8alkyl-amino, (Ci_8alkyl)2-amino, amino-Ci.8alkyl,
C i _8alkyl-amino-C 1.8alkyl, (C1 _8alkyl)2-amino-C 1.8alkyl, C1 _8alkyl-amino-C 1 _8alkyl-amino,
Ci-8alkoxy-Ci_8alkyl-amino, Ci_8alkoxy-carbonyl-amino, hydroxy-Ci_8alkyl, hydroxy-Ci-8alkoxy-Ci_8alkyl, hydroxy-Ci_8alkyl-amino, (hydroxy-Ci_8alkyl)2-amino or (hydroxy-C i _8alkyl)(C i _8alkyl) amino.
[00177] In one embodiment of a compound of Formula (I), R3 is Ci_8alkyl selected from methyl, ethyl, propyl, isopropyl or tert-butyl.
[00178] In another embodiment of a compound of Formula (I), R3 is Ci_8alkyl selected from ethyl, propyl, isopropyl or tert-butyl.
[00179] In one embodiment of a compound of Formula (I), R3 is halo-Ci_8alkyl selected from trihalo-methyl, dihalo-methyl, halo-methyl, trihalo-ethyl, dihalo-ethyl, halo-ethyl, trihalo-propyl, dihalo-propyl or halo-propyl; wherein, halo is selected from fluoro, chloro, bromo or iodo.
[00180] In another embodiment of a compound of Formula (I), R3 is halo-Ci_8alkyl selected from trihalo-methyl, dihalo-methyl, halo-methyl, trihalo-ethyl, dihalo-ethyl, trihalo-propyl or dihalo-propyl; wherein, halo is selected from fluoro, chloro, bromo or iodo.
[00181] In one embodiment of a compound of Formula (I), R3 is hydroxy-C i-8alkyl selected from hydroxy-methyl, hydroxy-ethyl, hydroxy-propyl, dihydroxy-propyl, hydroxy-butyl or dihydroxy-butyl.
[00182] In another embodiment of a compound of Formula (I), R3 is hydroxy-C i_8alkyl selected from hydroxy-methyl, dihydroxy-propyl, hydroxy-butyl or dihydroxy-butyl.
[00183] In one embodiment of a compound of Formula (I), R3 is Ci_8alkoxy selected from methoxy, ethoxy, propoxy or isopropoxy.
[00184] In one embodiment of a compound of Formula (I), R3 is halo-Ci_8alkoxy selected from trihalo-methoxy, dihalo-methoxy, halo-methoxy, trihalo-ethoxy, dihalo-ethoxy, halo-ethoxy, trihalo-propoxy, dihalo-propoxy or halo-propoxy; wherein, halo is selected from fluoro, chloro, bromo or iodo.
2017204248 22 Jun 2017 [00185] In one embodiment of a compound of Formula (I), R3 is Ci-salkoxy-carbonyl-amino selected from methoxy-carbonyl-amino, ethoxy-carbonyl-amino, propoxy-carbonyl-amino, isopropoxy-carbonyl-amino, tert-butoxy-carbonyl-amino.
[00186] In one embodiment of a compound of Formula (I), R4 is C3_i4cycloalkyl selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; wherein, each instance of C3-i4Cycloalkyl is optionally substituted with R5 substituents.
[00187] In another embodiment of a compound of Formula (I), R4 is C3-scycloalkyl selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; wherein, each instance of Cs-scycloalkyl is optionally substituted with R5 substituents.
[00188] In one embodiment of a compound of Formula (I), R4 is CYi/cycloalkyl-C’i.salkyl, wherein C3_i4cycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; and, wherein, each instance of C3-i4cycloalkyl is optionally substituted with R5 substituents.
[00189] In another embodiment of a compound of Formula (I), R4 is C3-8Cycloalkyl-Ci-salkyl, wherein C3_8cycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; and, wherein, each instance of C3_8cycloalkyl is optionally substituted with R5 substituents.
[00190] In one embodiment of a compound of Formula (I), R4 is C3_i4cycloalkyl-amino, wherein C3_i4cycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; and, wherein, each instance of C3_i4cycloalkyl is optionally substituted with R5 substituents.
[00191] In another embodiment of a compound of Formula (I), R4 is C3-scycloalkyl-amino, wherein C3-scycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl; and, wherein, each instance of C3-scycloalkyl is optionally substituted with R5 substituents.
[00192] In one embodiment of a compound of Formula (I), R4 is aryl-Ci-salkyl, aryl-Ci_8alkoxy-carbonyl or aryl-sulfonyloxy-Ci-salkyl, wherein aryl is selected from phenyl; and, wherein, each instance of aryl is optionally substituted with R5 substituents.
[00193] In another embodiment of a compound of Formula (I), R4 is aryl-Ci-salkyl or aryl-Ci-salkoxy-carbonyl, wherein each instance of aryl is optionally substituted with R5 substituents.
2017204248 22 Jun 2017 [00194] In one embodiment of a compound of Formula (I), R4 is heterocyclyl selected from oxetanyl, pyrrolidinyl, piperidinyl, piperazinyl, 1,3-dioxanyl or morpholinyl, wherein each instance of heterocyclyl is optionally substituted with R5 substituents.
[00195] In another embodiment of a compound of Formula (I), R4 is heterocyclyl selected from oxetan-3-yl, pyrrolidin-l-yl, piperidin-l-yl, piperazin-1-yl, l,3-dioxan-5-yl or morpholin-4-yl, wherein each instance of heterocyclyl is optionally substituted with R5 substituents.
[00196] In one embodiment of a compound of Formula (I), R4 is heterocyclyl-Ci-salkyl, wherein each instance of heterocyclyl is selected from pyrrolidinyl or piperidinyl; and, wherein, each instance of heterocyclyl is optionally substituted with R5 substituents.
[00197] In another embodiment of a compound of Formula (I), R4 is heterocyclyl-Ci-salkyl selected from pyrrolidin- l-yl-Cj.xalkyl or piperidin-l-yl-Ci-salkyl, wherein each instance of heterocyclyl is optionally substituted with R5 substituents.
[00198] In one embodiment of a compound of Formula (I), R5 is selected from halogen, hydroxy, cyano, nitro, halo-Ci_salkyl, Cj ^alkoxy, halo-Ci-salkoxy, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino or Cj.salkyl-thio; wherein, halogen and halo is selected from fluoro, chloro, bromo or iodo.
[00199] In one embodiment of a compound of Formula (I), R5 is hydroxy.
[00200] In one embodiment of a compound of Formula (I), R5 is Ci_salkyl selected from methyl, ethyl, propyl, isopropyl, n-butyl or tert-butyl.
[00201] In another embodiment of a compound of Formula (I), Rs is Ci-salkyl selected from ethyl, propyl, isopropyl or tert-butyl.
[00202] In one embodiment of a compound of Formula (I), R5 is halo-Ci-galkyl selected from trihalo-methyl, dihalo-methyl, halo-methyl, trihalo-ethyl, dihalo-ethyl, halo-ethyl, trihalo-propyl, dihalo-propyl or halo-propyl; wherein, halo is selected from fluoro, chloro, bromo or iodo.
[00203] In one embodiment of a compound of Formula (I), R5 is Ci-salkoxy selected from methoxy, ethoxy, propoxy or isopropoxy.
[00204] In one embodiment of a compound of Formula (I), R5 is halo-Ci-salkoxy selected from trihalo-methoxy, dihalo-methoxy, halo-methoxy, trihalo-ethoxy, dihalo-ethoxy, halo-ethoxy, trihalo-propoxy, dihalo-propoxy or halo-propoxy; wherein, halo is selected from fluoro, chloro, bromo or iodo.
2017204248 22 Jun 2017 [00205] In one embodiment of a compound of Formula (I), R2 is aryl selected from phenyl optionally substituted with Re and R7 substituents.
[00206] In one embodiment of a compound of Formula (I), R2 is aryl-amino, wherein aryl is selected from phenyl; and, wherein, each instance of aryl is optionally substituted with R6 and R7 substituents.
[00207] In another embodiment of a compound of Formula (I), R2 is aryl-amino selected from phenyl-amino; wherein, each instance of aryl is optionally substituted with Ri and R7 substituents.
[00208] In one embodiment of a compound of Formula (I), R2 is aryl-amino-carbonyl, wherein aryl is selected from phenyl; and, wherein, each instance of aryl is optionally substituted with Rg and R7 substituents.
[00209] In another embodiment of a compound of Formula (I), R2 is aryl-amino-carbonyl selected from phenyl-amino-carbonyl; wherein, each instance of aryl is optionally substituted with Rg and R? substituents.
[00210] In one embodiment of a compound of Formula (I), [00211] R2 is heterocyclyl selected from 1,2,3,6-tetrahydropyridinyl, 1,3-benzodioxolyl or
2,3-dihydro-f ,4-benzodioxinyl; wherein, each instance of heterocyclyl is optionally substituted with R6 and R7 substituents.
[00212] In another embodiment of a compound of Formula (I), [00213] R2 is heterocyclyl selected from l,2,3,6-tetrahydropyridin-4-yl, 1,3-benzodioxo 1-5-yl or 2,3-dihydro-l,4-benzodioxin-6-yl; wherein, each instance of heterocyclyl is optionally substituted with R6 and R7 substituents.
[00214] In one embodiment of a compound of Formula (I), [00215] R2 is heteroaryl selected from thienyl, 1/7-pyrazolyl, \H-imidazolyl, 1,3-thiazolyl,
1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl, pyridinyl, pyrimidinyl, IH-indolyl, 2//-indolyl, I //-indazolyl, 2//-indazolyl, indolizinyl, bcnzofuranyl, bcnzothicnyl,
I//-benzimidazolyl, 1,3-benzothiazolyl, 1,3-benzoxazolyl, 9//-purinyl, furo[3,2-6]pyridinyl, furo[3,2-c]pyridinyl, furo[2,3-c]pyridinyl, thieno[3,2-c]pyridinyl, thieno[2,3-d]pyrimidinyl, l/7-pyrrolo[2,3-0]pyridinyl, l//-pyrrolo[2,3-c]pyridinyl, pyrrolo[l,2-<2]pyrimidinyl, pyrrolo[l,2-a]pyrazinyl, pyrrolo[l,2-6]pyridazinyl, pyrazolo[l,5-a]pyridinyl, pyrazolo[l,5-a]pyrazinyl,
2017204248 22 Jun 2017 imidazo [ 1,2-a]pyridinyl, imidazo [ 1,2-a]pyrimidinyl, imidazo [ 1,2-c]pyrimidinyl, imidazo[ 1,2-b]pyridazinyl, imidazof 1,2-a]pyrazinyl, imidazo[2,1 -b\[ 1,3]thiazolyl, imidazo[2,l-6][l,3,4]thiadiazolyl, [l,3]oxazolo[4,5-6]pyridinyl or quinoxalinyl; wherein, each instance of heteroaryl is optionally substituted with R(, and R? substituents.
[00216] In another embodiment of a compound of Formula (I), [00217] R.2 is heteroaryl selected from thien-2-yl, thien-3-yl, 1 W-pyrazol-3-yl,
1//-pyrazo 1-4-yl, l//-pyrazol-5-yl, l/Z-imidazol-l-yl, Iff-imidazo 1-4-yl,
1.3- thiazo 1-2-yl, 1,2,4-oxadiazo 1-3-yl, l,3,4-oxadiazol-2-yl, pyridin-2-yl, pyridin-3-yl, pyridin-4-yl, pyrimidin-4-yl, 177-indol-3-yl, l/7-indol-4-yl, l/f-indol-5-yl, 1H-indo 1-6-yl, 1 //-indazol-5-yl, 2//-indazol-5-yl, indolizin-2-yl, benzo furan-2-yl, benzo furan-5-yl, benzothien-2-yl, benzothien-3-yl,
1//-bcnzimidazo 1-2-yl, 1/Z-benzimidazo 1-6-yl, 1,3-benzoxazo 1-2-yl,
1.3- benzoxazo 1-5-yl, 1,3-benzoxazo 1-6-yl, 1,3-benzothiazo 1-2-yl,
1.3- benzothiazo 1-5-yl, 1,3-benzothiazo 1-6-yl, 9/f-purin-8-yl, furo[3,2-6]pyridin-2-yl, furo[3,2-c]pyridin-2-yl, furo[2,3-c]pyridin-2-yl, thieno[3,2-c]pyridin-2-yl, thieno[2,3-c/]pyrimidin-6-yl, l/7-pyrrolo[2,3-6]pyridin-5-yl, l/7-pyrrolo[2,3-c]pyridin-4-yl, pyrrolo[l,2-a]pyrimidin-7-yl, pyrrolo[l,2-a]pyrazin-7-yl, pyrrolo[l,2-6]pyridazin-2-yl, pyrazolo[l,5-a]pyridin-2-yl, pyrazolo[l,5-a]pyrazin-2-yl, imidazo[l,2-a]pyridin-2-yl, imidazo [ 1,2-a]pyridin-6-yl, imidazo [ 1,2-a]pyrimidin-2-yl, imidazo [ 1,2-a]pyrimidin-6-yl, imidazo [ 1,2-c]pyrimidin-2-yl, imidazo [ 1,2-6]pyridazin-2-yl, imidazo [ 1,2-a]pyrazin-2-yl, imidazo[2,1-6][1,3]thiazol-6-yl, imidazo[2,l-6][l,3,4]thiadiazol-6-yl, [l,3]oxazolo[4,5-6]pyridin-2-yl or quinoxalin-2-yl; wherein, each instance of heteroaryl is optionally substituted with R(, and R7 substituents.
[00218] In another embodiment of a compound of Formula (I), [00219] R2 is substituted heteroaryl selected from 4-methylthien-2-yl,
-methyl- 1/7-pyrazo 1-3-yl, 4-methyl- 177-pyrazo 1-3-yl, 1 -phenyl-1 //-pyrazo 1-3-yl,
-phenyl-\H-imidazo 1-4-yl, 2-methyl-1 -(pyridin-2-yl)-1 //-imidazol-4-yl,
2017204248 22 Jun 2017
4-methyl-l,3-thiazo 1-2-yl, 4-(trifluoromethyl)-l,3-thiazo 1-2-yl,
4- phenyl-l,3-thiazo 1-2-yl, 5-phenyl-l,2,4-oxadiazol-3-yl, 3-fluoropyridin-4-yl,
6-fluoropyridin-2-yl, 2-chloropyridin-4-yl, 4-chloropyridin-3-yl,
5- chloropyridin-2-yl, 6-methylpyridin-3-yl, 2-(trifluoromethyl)pyridin-3-yl, 4-(trifluoromethyl)pyridin-2-yl, 6-(trifluoromethyl)pyridin-2-yl, 2-methoxypyridin-4-yl, 4-methoxypyridin-3-yl, 6-methoxypyridin-2-yl, 2-ethoxypyridin-3-yl, 6-ethoxypyridin-2-yl, 6-(propan-2-yloxy)pyridin-2-yl,
6- (dimethylamino)pyridin-3-yl, 6-(methylsulfanyl)pyridin-2-yl, 6-(cyclobutyloxy)pyridin-2-yl, 6-(pyrrolidin-1 -yl)pyridin-2-yl, 2-methylpyrimidin-4-yl, 2-(propan-2-yl)pyrimidin-4-yl, 2-cyclopropylpyrimidin-4-yl, 1-methyl-lH-indol-3-yl, 2-mcthvl-2//-indazol-5-yl, 2-methyl-l-benzo furan-5-yl, 1-methyl-l/f-benzimidazol-2-yl,
4-methyl-I //-bcnzimidazo 1-2-yl 5-fluoro-I //-bcnzimidazo 1-2-yl, 4-fluoro-l,3-benzoxazo 1-2-yl, 5-fluoro-l,3-benzoxazol-2-yl, 4-chloro-l,3benzoxazo 1-2-yl, 4-iodo-l,3-benzoxazol-2-yl, 2-methyl-l,3-benzoxazo 1-6-yl, 4methyl-1,3-benzoxazo 1-2-yl, 4-(trifluoromethyl)-1,3-benzoxazo 1-2-yl, 7(trifluoromethyl)-1,3 -benzoxazo 1-2-yl, 2-methyl-1,3-benzothiazo 1-2-yl, 2-methyl-1,3-benzothiazo 1-5-yl, 2-methyl-1,3-benzothiazo 1-6-yl, 4-chloro-1,3benzothiazol-2-yl, 7-chloro-l,3-benzothiazo 1-2-yl, 4-(trifluoromethyl)-l,3-benzothiazo 1-2-yl, 5-methylfuro[3,2-ri]pyridin-2-yl,
4.6- dimethylfuro[3,2-c]pyridin-2-yl, 5,7-dimethylfuro[2,3-c]pyridin-2-yl,
4.6- dimethylthieno[3,2-c]pyridin-2-yl, 2,4-dimethylthieno[2,3-t/]pyrimidin-6-yl,
1- methyipyrrolo[l,2-a]pyrazin-7-yl, 3-methylpyrrolo[l,2-u]pyrazin-7-yl, l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl, 2-methylpyrrolo[l,2-ri]pyridazin-2-yl,
4.6- dimethylpyrazolo[l ,5-a]pyrazin-2-yl, 5-methylpyrazolo[l ,5-a]pyridin-2-yl,
4.6- dimcthylpyrazolo[l,5-a]pyrazin-2-yl,
2- chloroimidazo[2,l -ri][l ,3]lhiazo 1-6-yl, 2-methylimidazo[2,l-ri][l,3]thiazol-6-yl, 3 -methylimidazo [2,1 -£>] [ 1,3 ]th iazo 1-6-yl, 2-ethylimidazo [2,1 -ri] [ 1,3]thiazol-6-yl, 2-methylimidazo[2,1 -ri] [ 1,3,4]thiadiazo 1-6-yl, 6-cyanoimidazo[ 1,2-u]pyridin-2-yl (also referred to as 2-imidazo[l,2-a]pyridine-6-carbonitrile), 6-fluoroimidazo[l,2-a]pyridin-2-yl, 8-fluoroimidazo[l,2-a]pyridin-2-yl,
2017204248 22 Jun 2017
6.8- difluoroimidazo[l,2-a]pyridin-2-yl,
7- (trifluoromethyl)imidazo[l,2-a]pyridin-2-yl,
8- (trifluoromethyl)imidazo[l,2-a]pyridin-2-yl, 6-chloroimidazo[l,2-a]pyridin-2-yl, 7-chloroimidazo[l,2-a]pyridin-2-yl, 8-chloroimidazo[l,2-a]pyridin-2-yl, 8-bromoimidazo[l,2-a]pyridin-2-yl, 2-methylimidazo [ 1,2-a]pyridin-2-yl, 5 -methylimidazo [ 1,2-a]pyridin-2-yl,
6- methylimidazo [ 1,2-a]pyridin-2-yl, 7-methylimidazo [ 1,2-a]pyridin-2-yl, 8-methylimidazo [ 1,2-a]pyridin-2-yl, 7-ethylimidazo [ 1,2-a]pyridin-2-yl, 8-ethylimidazo[l,2-a]pyridin-2-yl, 6,8-dimethylimidazo[l,2-a]pyridin-2-yl, 8-ethyl-6-methylimidazo[l,2-u]pyridin-2-yl,
7- methoxyimidazo[l ,2-a]pyridin-2-yl, 8-methoxyimidazo[l ,2-a]pyridin-2-yl, 6-fluoro-8-methylimidazo[l,2-a]pyridin-2-yl,
8- fluoro-6-methylimidazo[l,2-a]pyridin-2-yl, 8-chloro-6-methylimidazo[l,2-a]pyridin-2-yl, 6-methyl-8-nitroimidazo[l,2-a]pyridin-2-yl, 8-cyclopropylimidazo[l,2-a]pyridin-2-yl, 2-methylimidazo [l,2-a]pyridin-6-yl, 2-ethylimidazo[l,2-a]pyridin-6-yl, 2,3-dimethylimidazo[l,2-a]pyridin-6-yl,
2.8- dimethylimidazo [ 1,2-a]pyridin-6-yl, 2-(trifluoromethyl)imidazo[l,2-a]pyridin-6-yl, 8-chloro-2methylimidazo[l,2-a]pyridin-6-yl, 8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl, 6-fluoroimidazo[l,2-a]pyrimidin-2-yl, 6-chloroimidazo[l,2-a]pyrimidin-2-yl, 6-methylimidazo[ 1,2-<v] pyr i m idi n-2-yl, 7-methylimidazo[ 1,2-a]pyrimidin-2-y 1, 2-methylimidazo[ 1,2-<v]pyrimidin-6-yl, 6-methylimidazo[ 1,2-/)] pyr idaz i n-2-y I, 2-methyl-3-(l,2,3,6-tetrahydropyridin-4-yl)imidazo[l,2-0]pyridazin-6-yl, 6-methylimidazo[l ,2-a]pyrazin-2-yl, 8-methylimidazo[1,2-a]pyrazin-2-yl,
6.8- dimcthylimidazo[ 1,2-a]pyrazin-2-yl, 6chloro-8-methylimidazo[l,2-a]pyrazin-2-yl, 6-methyl-8-(trifluoromethyl)imidazo[l,2-a]pyrazin-2-yl, 8-(methylsulfanyl)imidazo[l,2-a]pyrazin-2-yl, 2-methylimidazo[2,l-0][l,3]thiazo 1-6-yl, 3-methylimidazo[2,l-Z>][l,3]thiazo 1-6-yl or 2-methylimidazo [2,1 -h] [ 1,3,4]thiadiazol-6-yl.
2017204248 22 Jun 2017 [00220] In another embodiment of a compound of Formula (I), [00221] R2 is heteroaryl selected from thienyl, l//-pyrazolyl, 1H-imidazolyl, 1,3-thiazolyl,
1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl, pyridinyl, pyrimidinyl, l//-indolyl, 2//-indolyl, I //-indazolyl, 2//-indazolyl, indolizinyl, benzofuranyl, benzothienyl, 1//-benzimidazolyl, 1,3-benzothiazolyl, 1,3-benzoxazolyl, 9//-purinyl; wherein, each instance of heteroaryl is optionally substituted with R6 and R7 substituents.
[00222] In another embodiment of a compound of Formula (I), [00223] R2 is heteroaryl selected from furo[3,2-h]pyridinyl, furo[3,2-c]pyridinyl, furo[2,3-c]pyridinyl, thieno[3,2-c]pyridinyl, thieno[2,3-tZ]pyrimidinyl, //-pyrro lo [2,3 -h]pyr idinyl, 1 //-pyrro lo [2,3 -c]pyr idiny 1, pyrrolo[l,2-fl]pyrimidinyl, pyrrolo[l,2-a]pyrazinyl, pyrrolo[l ,2-/?]pyridazinyl, pyrazolo[ 1,5-a]pyridinyl, pyrazolo[ 1,5-<v]pyrazinyI, imidazo[ 1,2-n]pyridinyl, imidazo [ 1,2-a]pyrimidinyl, imidazo [ 1,2-c]pyrimidinyl, imidazo[ 1,2-h]pyridazinyl, imidazo[ 1,2-a]pyrazinyl, imidazo[2,1 -6][ 1,3]thiazolyl, imidazo[2,l-b][l,3,4]thiadiazolyl, [l,3]oxazolo[4,5-b]pyridinyl or quinoxalinyl; wherein, each instance of heteroaryl is optionally substituted with R6 and R7 substituents.
[00224] In one embodiment of a compound of Formula (I), R2 is heteroaryl-amino, wherein heteroaryl is selected from pyridinyl or pyrimidinyl; and, wherein, each instance of heteroaryl is optionally substituted with R6 and R7 substituents.
[00225] In another embodiment of a compound of Formula (I), R2 is heteroaryl-amino selected frompyridin-2-yl-amino, pyridin-3-yl-amino or pyrimidin-2-yl-amino; wherein, each instance of heteroaryl is optionally substituted with R6 and R7 substituents.
[00226] In one embodiment of a compound of Formula (I), R6 is selected from halogen, hydroxy, cyano, nitro, Ci-galkyl, halo-Ci-salkyl, hydroxy-Ci-galkyl, Ci^alkoxy, halo-Ci.«alkoxy, Ci-salkoxy-Ci-salkyl, (Ci-salkyl)2-amino or Ci-salkyl-thio; wherein, halogen and halo is selected from fluoro, chloro, bromo or iodo.
[00227] In one embodiment of a compound of Formula (I), R6 is Ci-salkyl selected from methyl, ethyl, propyl, isopropyl or tert-butyl.
[00228] In another embodiment of a compound of Formula (I), Ri is Ci-salkyl selected from ethyl, propyl, isopropyl or tert-butyl.
2017204248 22 Jun 2017 [00229] In one embodiment of a compound of Formula (I), R.6 is C2-salkenyl selected from ethenyl, allyl or buta-1,3-dienyl.
[00230] In another embodiment of a compound of Formula (I), R6 is C2-salkenyl selected from ethenyl or allyl.
[00231] In one embodiment of a compound of Formula (I), Re is halo-Ci.salkyl selected from trihalo-methyl, dihalo-methyl, halo-methyl, trihalo-ethyl, dihalo-ethyl, halo-ethyl, trihalo-propyl, dihalo-propyl or halo-propyl; wherein, halo is selected from fluoro, chloro, bromo or iodo.
[00232] In one embodiment of a compound of Formula (I), R6 is hydroxy-Ci-salkyl selected from hydroxy-methyl, hydroxy-ethyl, hydroxy-propyl, dihydroxy-propyl, hydroxy-butyl or dihydroxy-butyl.
[00233] In another embodiment of a compound of Formula (I), Re is hydroxy-Ci-salkyl selected from hydroxy-methyl, dihydroxy-propyl, hydroxy-butyl or dihydroxy-butyl.
[00234] In one embodiment of a compound of Formula (I), Re is Ci-salkoxy selected from methoxy, ethoxy, propoxy or isopropoxy.
[00235] In one embodiment of a compound of Formula (I), Re is halo-Ci-salkoxy selected from trihalo-methoxy, dihalo-methoxy, halo-methoxy, trihalo-ethoxy, dihalo-ethoxy, halo-ethoxy, trihalo-propoxy, dihalo-propoxy or halo-propoxy; wherein, halo is selected from fluoro, chloro, bromo or iodo.
[00236] In one embodiment of a compound of Formula (I), R7 is C3_i4cycloalkyl, C3-i4cycloalkyl-oxy, aryl, heterocyclyl or heteroaryl; wherein Cs-ncycloalkyl is selected from cyclopropyl or cyclobutoxy; wherein aryl is selected from phenyl; wherein heterocyclyl is selected from oxetanyl, pyrrolidinyl or 1,2,3,6-tetrahydropyridinyl; and, wherein heteroaryl is selected from thienyl or pyridinyl.
[00237] In another embodiment of a compound of Formula (I), R7 is C3-i4cycloalkyl or C3-i4cycloalkyl-oxy, wherein each instance of Cs-ncycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopcntyl, cyclohcxyl or cyclohcptyl.
[00238] In another embodiment of a compound of Formula (I), R7 is C3-scycloalkyl or C3-scycloalkyl-oxy, wherein each instance of C3-scycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl.
[00239] In one embodiment of a compound of Formula (I), R7 is aryl selected from phenyl.
2017204248 22 Jun 2017 [00240] In one embodiment of a compound of Formula (I), R7 is heterocyclyl selected from oxetanyl, pyrrolidinyl or 1,2,3,6-tetrahydropyridinyl.
[00241] In another embodiment of a compound of Formula (I), R7 is heterocyclyl selected from oxetan-3-yl, pyrrolidin-l-yl or l,2,3,6-tetrahydropyridin-4-yl.
[00242] In one embodiment of a compound of Formula (I), R7 is heteroaryl selected from thienyl or pyridinyl.
[00243] In another embodiment of a compound of Formula (I), R7 is heteroaryl selected from pyridinyl.
[00244] In one embodiment of a compound of Formula (I), R7 is heteroaryl selected from thien-2-yl or pyridin-2-yl.
[00245] In another embodiment of a compound of Formula (I), R7 is heteroaryl selected from pyridin-2-yl.
[00246] In one embodiment of a compound of Formula (I), Rc is hydrogen or Ci-salkyl.
[00247] In another embodiment of a compound of Formula (I), [00248] Ri is heterocyclyl, hctcrocyclyl-Cj.salkyl, heterocyclyl-Ci_salkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-salkyl)amino, heterocyclyl-amino-C 1 -salkyl, heterocyclyl-C 1 .salkyl-amino, (heterocyclyl-Ci-8alkyl)2-amino, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino, heterocyclyl-Ci_8alkyl-amino-Ci-8alkyl, (heterocyclyl-Ci-8alkyl)2-amino-Ci.salkyl, (heterocyclyl-Ci-salkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3_i4cycloalkyl, aryl-Ci-8alkyl-amino, (aryl-Ci_8alkyl)2-amino, (aryl-Ci-8alkyl)(Ci-salkyl)amino, aryl-Ci-salkyl-amino-Ci-salkyl, (aryl-Ci-salkyl)2-amino-Ci-salkyl, (aryl-C 1 _salkyl)(Ci-salkyl)amino-C 1 -salkyl, heteroaryl, heteroaryl-C 1 -salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, heteroaryl-Ci-salkyl-amino, (hctcroaryl-C 1 -salkyl)2-amino, (hetero aryl-C 1 _salkyl)(C 1 -salkyl)amino, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (heteroaryl-Ci-salkyl)2-amino-Ci-salkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-salkyl; wherein, each instance of heterocyclyl, C3-i4Cyeloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents; and,
2017204248 22 Jun 2017 [00249] wherein, heterocyclyl is selected from azetidinyl, tetrahydro furanyl, pyrrolidinyl, piperidinyl, piperazinyl, 1,4-diazepanyl, 1,2,5,6-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl, hcxahydropyrrolo[3,4-/)]pyrrol-(l//)-yl, (3aS,6aS)-hexahydropynOlo[3,4-0]pynOl-(l/7)-yl, (3a7?,6a7?)-hexahydropyrrolo[3,4-h]pyrrol-( 1 //)-yl, hexahydropyrrolo [3,4-h]pyrrol-( 2//)-y 1, (3a5,6a5)-hexahydropyrrolo[3,4-h]pyrrol-(27/)-yl, hexahydropyrrolo [3,4-c]pyrro 1-( 1 //)-yl, (3a7?,6a5)-hexahydropyrrolo[3,4-c]pyrrol-(l/7)-yl, octahydro-5/7-pyrrolo[3,2-c]pyridinyl, octahydro-677-pyrrolo[3,4-6]pyridinyl, (4a/?,7a/?)-octahydro-6//-pyrrolo[3,4-/?]pyridinyl, (4a5,7aS)-octahydro-6f/-pyrrolo[3,4-b]pyridinyl, hexahydropyrrolo [ 1,2-a]pyrazin-(2//)-onc, hexahydropyrrolo [ 1,2-a]pyrazin-( l/7)-yl, (77?,8aS)-hexahydropyrrolo[l,2-a]pyrazin-(177)-yl, (8aS)-hexahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, (8a/?)-hexahydropyrrolo[l,2-a]pyrazin-(17/)-yl, (8a5)-octahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, (8a7?)-octahydropyrrolo[l,2-a]pyrazin-(177)-yl, octahydro-2H-pyrido[l,2-a]pyrazinyl, 3-azabicyclo[3.1.0]hexyl, (17?,55)-3-azabicyclo[3.1.0]hexyl, 8-azabicyclo[3.2.1]octyl, (lA,55)-8-azabicyclo[3.2.1]octyl, 8-azabicyclo[3.2.1]oct-2-enyl, (17?,5S)-8-azabicyclo[3.2.1]oct-2-enyl, 9-azabicyclo[3.3.1]nonyl, (17?,55)-9-azabicyclo[3.3.1]nonyl, 2,5-diazabicyclo[2.2.1]heptyl, (15,41S)-2,5-diazabicyclo[2.2.1]heptyl, 2,5-diazabicyclo[2.2.2]octyl,
3.8- diazabicyclo[3.2.1]octyl, (1R,55)-3,8-diazabicyclo[3.2.l]octyl, l,4-diazabicyclo[3.2.2]nonyl, azaspiro[3.3]heptyl, 2,6-diazaspiro[3.3]heptyl, 2,7diazaspiro[3.5]nonyl, 5,8-diazaspiro[3.5]nonyl, 2,7-diazaspiro[4.4]nonyl or
6.9- diazaspiro[4.5]decyl.
2017204248 22 Jun 2017 [00250] In another embodiment of a compound of Formula (I), [00251] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino;
[00252] wherein, aryl is phenyl;
[00253] wherein, heterocyclyl is selected from 1,2,3,6-tetrahydropyridinyl, 1,3-benzodioxolyl or 2,3-dihydro-l,4-benzodioxinyl;
[00254] wherein, heteroaryl is selected from thienyl, I //-pyrazolyl, Iff-imidazolyl,
1,3-thiazolyl, 1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl, pyridinyl, pyrimidinyl, /7- indo lyl, 2/7-indolyl, I //-indazolyl, 2//-indazo lyl, indolizinyl, benzofuranyl, benzothienyl, 1/f-benzimidazolyl, f,3-benzothiazolyl, 1,3-benzoxazolyl, 9//-purinyl, furo[3,2-f]pyridinyl, furo[3,2-c]pyridinyl, furo[2,3-c]pyridinyl, thieno[3,2-c]pyridinyl, thieno[2,3-d]pyrimidinyl, l/f-pyrrolo[2,3-b]pyridinyl, l/7-pyrrolo[2,3-c]pyridinyl, pyrrolo[l,2-u]pyrimidinyl, pyrrolo[l,2-a]pyrazinyl, pyrrolo[l,2-6]pyridazinyl, pyrazolo[l,5-u]pyridinyl, pyrazolo[l,5-a]pyrazinyl, imidazo [ f ,2-a]pyridiny 1, imidazo [ f ,2-a]pyrimidiny 1, imidazo [ 1,2-c]pyrimidinyl, imidazo[ f ,2-f]pyridazinyl, imidazo[ f ,2-a]pyrazinyl, imidazo[2,1 -Z>] [ 1,3]thiazolyl, imidazo[2,l-h][l,3,4]thiadiazolyl, [l,3]oxazolo[4,5-h]pyridinyl or quinoxalinyl; and, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00255] In another embodiment of a compound of Formula (I), [00256] Ri is heterocyclyl, heterocyclyl-Ci-salkyl, heterocyclyl-Ci-salkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-8alkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-8alkyl)2-amino, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino, heterocyclyl-C 1 .salkyl-amino-C 1 .8alkyl, (heterocyclyl-C 1.8alkyl)2-amino-C 1 .salkyl, (hctcrocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl, hctcrocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3-i4cycloalkyl, aryl-Ci-salkyl-amino, (aryl-Ci.salkyl)2-amino, (aryl-Ci-8alkyl)(Ci-salkyl)amino, aryl-Ci-8alkyl-amino-Ci_8alkyl, (aryl-Ci-8alkyl)2-amino-Ci-salkyl, (aryl-C 1 .salkyl)(C 1 _salkyl)amino-C 1 .salkyl, heteroaryl, heteroaryl-C 1 .salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, hctcroaryl-C’i-salkyl-amino,
2017204248 22 Jun 2017 (heteroaryl-Ci-8alkyl)2-amino,(heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (heteroaryl-Ci-8alkyl)2-amino-Ci-8alkyl or (heteroaryl-C i -salkyl)(C i -8alkyl)amino-C, -8 alky 1;
[00257] wherein, heterocyclyl is selected from azetidinyl, tetrahydrofuranyl, pyrrolidinyl, piperidinyl, piperazinyl, 1,4-diazepanyl, 1,2,5,6-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl, hexahydropyrrolo[3,4-0]pyrrol-(l//)-yl, (3a5,6a5)-hexahydropyrrolo[3,4-0]pyrrol-(17/)-yl, (3aR,6aR)-hexahydropyrrolo[3,4-6]pyrrol-( l//)-yl, hexahydropyrrolo [3,4-6]pyrrol-(2//)-yl, (3a5,6a5)-hexahydropyrrolo[3,4-0]pyrrol-(277)-yl, hexahydropyrrolo [3,4-c]pyrro 1-( 1 //)-yl, (3aR,6a5)-hexahydropyrrolo[3,4-c]pyrrol-(12/)-yl, octahydro-5//-pyrrolo[3,2-c]pyridinyl, octahydro-6//-pyrrolo[3,4-6]pyriclinyl, (4aR,7aR)-octahyclro-6//-pyrrolo[3,4-/?]pyridinyl, (4a5,7a5)-octahydro-67/-pyrrolo[3,4-6]pyridinyl, hexahydropyrrolo [ 1,2-«]pyrazin-(2//)-onc, hexahydropyrrolo [ 1,2-a]pyrazin-( l//)-yl, (7R,8a5)-hexahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, (8a5)-hexahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, (8aR)-hexahydropyrrolo[l,2-a]pyrazin-(l//)-yl, (8a5)-octahydropyrrolo[l,2-a]pyrazin-(l/Z)-yl, (8aR)-octahydropyrrolo[l,2-a]pyrazin-(17/)-yl, octahydro-2H-pyrido[l,2-a]pyrazinyl, 3-azabicyclo[3.1.0]hexyl, (lR,55)-3-azabicyclo[3.1.0]hexyl, 8-azabicyclo[3.2.1]octyl, (lR,55)-8-azabicyclo[3.2.1]octyl, 8-azabicyclo[3.2.1]oct-2-enyl, (lR,55)-8-azabicyclo[3.2.1]oct-2-cnyl, 9-azabicyclo[3.3.1]nonyl, (lR,55)-9-azabicyclo[3.3.1]nonyl, 2,5-diazabicyclo[2.2.1]heptyl, (IS,45)-2,5-diazabicyclo[2.2. l]heptyl, 2,5-diazabicyclo[2.2.2]octyl, 3,8-diazabicyclo[3.2.1]octyl, (IR,55)-3,8-diazabicyclo[3.2. ljoctyl, l,4-diazabicyclo[3.2.2]nonyl, azaspiro[3.3]heptyl, 2,6-diazaspiro[3.3]heptyl, 2,7diazaspiro[3.5]nonyl, 5,8-diazaspiro[3.5]nonyl, 2,7-diazaspiro[4.4]nonyl or
2017204248 22 Jun 2017
6,9-diazaspiro[4.5]decyl; and, wherein, each instance of heterocyclyl, CYucycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents; and [00258] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino:
[00259] wherein, heterocyclyl is selected from l,2,3,6-tetrahydropyridin-4-yl,
1.3- benzodioxo 1-5-yl or 2,3-dihydro-l,4-benzodioxin-6-yl;
[00260] wherein, heteroaryl is selected from thienyl, I //-pyrazolyl, \H-imidazolyl,
1.3- thiazolyl, 1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl, pyridinyl, pyrimidinyl, lH-indolyl, 2//- inclo lyl, I //-i nd azo ly I, 2//-indazolyl, indolizinyl, benzofuranyl, benzothienyl, 1//-benzimidazolyl, 1,3-benzothiazolyl, 1,3-benzoxazolyl, 9//-purinyl, furo[3,2-ri]pyridinyl, furo[3,2-c]pyridinyl, furo[2,3-c]pyridinyl, thieno[3,2-c]pyridinyl, thieno[2,3-d]pyrimidinyl, l//-pyrrolo[2,3-Z>]pyridinyl, l//-pyrrolo[2,3-c]pyridinyl, pyrrolo[l,2-a]pyrimidinyl, pyrrolo[l,2-a]pyrazinyl, pyrrolo[l,2-b]pyridazinyl, pyrazolo[l,5-a]pyridinyl, pyrazolo[l,5-a]pyrazinyl, imidazo [ 1,2-a]pyridinyl, imidazo [ 1,2-a]pyrimidinyl, imidazo [ 1,2-c]pyrimidinyl, imidazo[ 1,2-6]pyridazinyl, imidazo[ 1,2-a]pyrazinyl, imidazo[2,1 -6][ 1,3]thiazolyl, imidazo[2,l-6][l,3,4]thiadiazolyl, [l,3]oxazolo[4,5-6]pyridinyl or quinoxalinyl; and, wherein, each instance of heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00261] In another embodiment of a compound of Formula (I), [00262] Ri is Ci-salkyl, amino, Ci-salkyl-amino, (Ci-salkyfh-amino,
Ci-salkoxy-Ci-salkyl-amino, (Ci-salkoxy-Ci-salkyfo-amino, (Ci-salkoxy-C 1 -salky 1)(C 1 .salkyl)amino, amino-C 1 -salkyl, Ci-salkyl-amino-C 1 -salkyl, (C i-salkylfr-amino-C 1 -salkyl, Ci-salkoxy-Ci-salkyl-amino-Ci-salkyl, (Ci-salkoxy-Ci-salkyth-amino-Ci-salkyl, (Ci-salkoxy-C 1 -salky 1)(C 1 -salkyl)amino-C 1 -salkyl, amino-C 1 -salkyl-amino, (amino-Ci-salkyl)2-amino, (amino-Ci-8alkyl)(Ci-salkyl)amino, Ci-8alkyl-amino-Ci-8alkyl-amino, (Ci-safryl-amino-Ci-salkylfr-amino, (Ci-salkyl-amino-C 1 .salky 1)(C 1 .salkyl)amino, (C1 .salkyI b-amino-C 1 .salkyl-amino, [(Ci-8alkyl)2-amino-Ci.8alkyl](Ci-8alkyl)amino, amino-Ci-salkoxy,
2017204248 22 Jun 2017
Ci-salkyl-amino-Ci-salkoxy, (Ci-salkyl-amino-Ci-salkoxy,
Ci-salkoxy-C 1 -salkyl-amino-Ci-salkoxy, (C1 -salkoxy-C 1 .salkyl)2-amino-C 1 -salkoxy, (C i-8alkoxy-C i -salkyl)(C, _salkyl)amino-C i -salkoxy, amino-C2-8alkenyl, Ci-8alkyl-amino-C2-8alkenyl, (Ci-8alkyl)2-amino-C2-salkenyl, amino-C2-salkynyl, Ci-8alkyl-amino-C2-8alkynyl, (Ci-8alkyl)2-amino-C2-salkynyl, halo-Ci-8alkyl-amino, (halo-Ci-8alkyl)2-amino, (halo-Ci-8alkyl)(Ci-salkyl)amino, hydroxy-Ci-salkyl, hydroxy-C 1 _8alkoxy-C 1 -salkyl, hydroxy-C 1 _8alkyl-amino, (hydroxy-C i-8alkyl)2-amino, (hydroxy-C]-8alkyl)(Ci-salkyl)amino, hydroxy-Ci-salkyl-amino-Ci-salkyl, (hydroxy-Ci-8alkyl)2-amino-Ci-salkyl, (hydroxy-C i _8alkyl)(C i _8alkyl)amino-C, _8alkyl, hydroxy-Ci-salkyl-amino-Ci-salkoxy, (hydroxy-Ci-8alkyl)2-amino-Ci-salkoxy, (hydroxy-C 1 -8alkyl)(C 1 _8alkyl)amino-C i -salkoxy, hydroxy-Ci-8alkyl-amino-Ci-8alkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino, (hydroxy-C i _8alkyl)2-amino-C i _8alkyl-amino, (hydroxy-C i _8alkyl-amino-C i -8alkyl)(C i .8alkyl)amino, (hydroxy-C i -8alkyl)(C i -8alkyl)amino-C i -salkyl-amino, [(hydroxy-C i _8alkyl)2-amino-C i _8alky 1] (C i -8alkyl)amino or [(hydroxy-C i -8alkyl)(C i _8alkyl)amino-C i _8alky 1] (C i -8alkyl)amino; and [00263] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00264] In another embodiment of a compound of Formula (I), [00265] Ri is heterocyclyl, heterocyclyl-Ci-8alkyl, heterocyclyl-Ci-8alkoxy, heterocyclyl-amino, (heterocyclyl)(Ci-8alkyl)amino, hctcrocyclyl-amino-Ci-salkyl, hctcrocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-salkyl)2-amino, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino, heterocyclyl-Ci-salkyl-amino-Ci-salkyl, (heterocyclyl-Ci-8alkyl)2-amino-Ci-salkyl, (heterocyclyl-Ci-8alkyl)(Ci-salkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, Cs-ncycloalkyl, aryl-Ci-salkyl-amino, (aryl-Ci.8alkyl)2-ammo, (aryl-Ci-8alkyl)(Ci-8alkyl)amino,
2017204248 22 Jun 2017 aryl-Ci-8alkyl-amino-Ci-8alkyl, (aryl-Ci.8alkyl)2-amino-Ci_8alkyl, (aryl-C 1 _8alkyl)(Ci.8alkyl)amino-C 1.8alkyl, heteroaryl, heteroaryl-C 1.8alkyl, heteroaryl-Ci-8alkoxy, heteroaryl-amino, heteroaryl-Ci-8alkyl-amino, (heteroaryl-C i _8alkyl)2-amino, (hetero aryl-C i _8alkyl)(C i _8alkyl)amino, heteroaryl-Ci-8alkyl-amino-Ci-8alkyl, (heteroaryl-C].8alkyl)2-amino-Ci-8alkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3-i4cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents; and [00266] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00267] In another embodiment of a compound of Formula (I), [00268] Ri is heterocyclyl, heterocyclyl-Ci-salkyl, heterocyclyl-Ci-salkoxy, heterocyclyl-amino, (heterocyclyl)(Ci.8alkyl)amino, heterocyclyl-amino-Ci_8alkyl, heterocyclyl-Ci_8alkyl-amino, (heterocyclyl-Ci-8alkyl)2-amino, (heterocyclyl-Ci.8alkyl)(Ci-8alkyl)amino, heterocyclyl-C 1 _8alkyl-amino-C 1.8alkyl, (heterocyclyl-C 1 _8alkyl)2-amino-C 1.8alkyl, (heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl or heterocyclyl-carbonyl-oxy; wherein, each instance of heterocyclyl is optionally substituted with R3 and R4 substituents; and [00269] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00270] In another embodiment of a compound of Formula (I), [00271] Ri is heterocyclyl optionally substituted with R3 and R4 substituents; and [00272] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, hctcroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00273] In another embodiment of a compound of Formula (I), [00274] Ri is C3_i4cycloalkyl optionally substituted with R3 and R4 substituents; and
2017204248 22 Jun 2017 [00275] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with and R7 substituents.
[00276] In another embodiment of a compound of Formula (I), [00277] Ri is aryl-C 1-salkyl-amino, (aryl-Ci-salkyl)2-amino, (aryl-Ci-salkyl)(C]-salkyl)amino, aryl-C]-8alkyl-amino-Ci-8alkyl, (aryl-Ci-8alkyl)2-amino-Ci-8alkyl or (aryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8alkyl; wherein, each instance of aryl is optionally substituted with R3 and R4 substituents; and [00278] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00279] In another embodiment of a compound of Formula (I), [00280] Ri is aryl-C i-8alkyl-amino optionally substituted with R3 and R4 substituents; and [00281] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with R6 and R7 substituents.
[00282] In another embodiment of a compound of Formula (I), [00283] Ri is heteroaryl, heteroaryl-Ci-salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, hetero aryl- C1 -salkyl-amino, (heteroaryl-C 1 -salkyl)2-amino, (hetero aryl-C 1 _salkyl)(C 1 .salkyl)amino, heteroaryl-Ci-salkyl-amino-Ci-salkyl, (heteroaryl-Ci-salkyl)2-amino-Ci-salkyl or (heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci-8alkyl; wherein, each instance of heterocyclyl, C3-i4cycloalkyl, aryl and heteroaryl is optionally substituted with R3 and R4 substituents; and [00284] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and hctcroaryl is optionally substituted with R6 and R7 substituents.
[00285] In another embodiment of a compound of Formula (I), [00286] Ri is heteroaryl optionally substituted with R3 and R4 substituents; and
2017204248 22 Jun 2017 [00287] R-2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino, wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with Rb and R7 substituents.
[00288] An embodiment of the compound of Formula (I) is a compound selected from Formula (II), Formula (III), Formula (IV), Formula (V), Formula (VI), Formula (VII), Formula (VIII), Formula (IX), Formula (X), Formula (XI), Formula (XII), Formula (XIII) or Formula (XIV):
1 p ^W2. ΛΛΛ,. 2γ 1γ7
W5 Y *4< A »5 γ W4< /N\ /«6 »5 γ
0 0 0
(II), (III), (IV),
wf γ w7 wf w7 w2 wK r τ ip
/A »5 Y VNyWe W4xNyN
0 0 o
(V), (VI), (VII),
W3 γ^ N w3 r w7 1 1 11 <.W2^N^ w3 w7 1 1 11
Y ^Νγ-θ N< ,N »5 Y
0 0 0
(VIII), (ix), (X),
Figure AU2017204248B2_D0003
(Xi), (ΧΠ), (XIII), or
Figure AU2017204248B2_D0004
w7
II
N
O (XIV) [00289] or a form thereof.
[00290] In an embodiment of the compound of Formula (I), w3 is C-Ri, W6 is C-R2, Wi, W4, W5 and w7 are independently C-Ra or N and W2 is C-Rh or N.
[00291] In another embodiment of the compound of Formula (I), w3 is C-R2, W6 is C-Ri, wi, W4, W5 and w7 are independently C-Ra or N and W2 is C-Rb or N.
2017204248 22 Jun 2017 [00292] In another embodiment of the compound of Formula (I), W4 is C-Ri, W7 is C-R2, wi,
W3 and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00293] In another embodiment of the compound of Formula (I), W4 is C-R2, W7 is C-Ri, wi,
W3 and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00294] In an embodiment of the compound of Formula (II), W3 is C-Ri, W6 is C-R2, W4, W5 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00295] In another embodiment of the compound of Formula (II), W3 is C-R2, W6 is C-Ri, W4,
W5 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00296] In another embodiment of the compound of Formula (II), W4 is C-Ri, W7 is C-R2, W3 and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00297] In another embodiment of the compound of Formula (II), W4 is C-R2, W7 is C-Ri, W3 and W5 are independently C-Ra or N, w2 is C-Rb or N and we is C-Rc or N.
[00298] In an embodiment of the compound of Formula (III), W3 is C-Ri, W6 is C-R2 and wi,
W4, W5 and W7 are independently C-Ra or N.
[00299] In another embodiment of the compound of Formula (III), W3 is C-R2, w6 is C-R] and wi, W4, W5 and W7 are independently C-Ra or N.
[00300] In another embodiment of the compound of Formula (III), W4 is C-Ri, W7 is C-R2, wi,
W3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00301] In another embodiment of the compound of Formula (III), W4 is C-R2, W7 is C-Ri, Wi,
W3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00302] In an embodiment of the compound of Formula (IV), W4 is C-Ri, W7 is C-R2, wi and
W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00303] In another embodiment of the compound of Formula (IV), W4 is C-R2, W7 is C-Ri, wi and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00304] In an embodiment of the compound of Formula (V), W3 is C-Ri, W6 is C-R2, wi, W5 and W7 arc independently C-Ra or N and w2 is C-Rb or N.
[00305] In another embodiment of the compound of Formula (V), W3 is C-R2, W6 is C-Ri, wi,
W5 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00306] In an embodiment of the compound of Formula (VI), W3 is C-Ri, W6 is C-R2, wi, W4 and W7 are independently C-Ra or N and w2 is C-Rb or N.
2017204248 22 Jun 2017 [00307] In another embodiment of the compound of Formula (VI), w3 is C-R2, W6 is C-Ri, wi, W4 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00308] In another embodiment of the compound of Formula (VI), W4 is C-Ri, W7 is C-R2, Wi and w3 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00309] In another embodiment of the compound of Formula (VI), W4 is C-R2, W7 is C-Ri, wi and w3 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00310] In another embodiment of the compound of Formula (VII), W4 is C-Ri, W7 is C-R2, wi, w3 and W5 are C-Ra or N and w2 is C-Rb or N.
[00311] In another embodiment of the compound of Formula (VII), W4 is C-R2, W7 is C-Ri, wi, w3 and W5 are C-Ra or N and w2 is C-Rb or N.
[00312] In another embodiment of the compound of Formula (VIII), w3 is C-Ri, W6 is C-R2, wi, W4 and W5 are C-Ra or N and w2 is C-Rb or N.
[00313] In another embodiment of the compound of Formula (VIII), w3 is C-R2, W6 is C-R], wi, W4 and W5 are C-Ra or N and w2 is C-Rb or N.
[00314] In an embodiment of the compound of Formula (IX), w3 is C-Ri, W6 is C-R2, W4 and
W7 are independently C-Ra or N and w2 is C-Rb or N.
[00315] In another embodiment of the compound of Formula (IX), w3 is C-R2, W6 is C-Ri, W4 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00316] In another embodiment of the compound of Formula (IX), W4 is C-Ri, W7 is C-R2, w2 is C-Rb or N, w3 is C-Ra or N and wtl is C-Rc or N.
[00317] In another embodiment of the compound of Formula (IX), W4 is C-R2, W7 is C-Ri, w2 is C-Rb or N, w3 is C-Ra or N and W6 is C-Rc or N.
[00318] In an embodiment of the compound of Formula (X), w3 is C-Ri, W6 is C-R2, w2 is
C-Rb or N and W5 and W7 are independently C-Ra or N.
[00319] In another embodiment of the compound of Formula (X), w3 is C-R2, we is C-Ri, w2 is C-Rb or N and W5 and W7 arc independently C-Ra or N.
[00320] In an embodiment of the compound of Formula (XI), W4 is C-Ri, W7 is C-R2, w2 is
C-Rb or N, W5 is C-Ra or N and W6 is C-Rc or N.
[00321] In another embodiment of the compound of Formula (XI), W4 is C-R2, W7 is C-Ri, w2 is C-Rb or N, W5 is C-Ra or N and W6 is C-Rc or N.
2017204248 22 Jun 2017 [00322] In an embodiment of the compound of Formula (XII), w3 is C-Ri, W6 is C-R2 and w4, ws and w? are independently C-Ra or N.
[00323] In another embodiment of the compound of Formula (XII), w3 is C-R2, W6 is C-Ri and w4, W5 and w7 are independently C-Ra or N.
[00324] In another embodiment of the compound of Formula (XII), w4 is C-Ri, W7 is C-R2, w3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00325] In another embodiment of the compound of Formula (XII), w4 is C-R2, w2 is C-Ri, w3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00326] In an embodiment of the compound of Formula (XIII), w3 is C-Ri, W6 is C-R2, w2 is
C-Rb or N and w4 and W5 are independently C-Ra or N.
[00327] In another embodiment of the compound of Formula (XIII), w3 is C-R2, W6 is C-Ri, w2 is C-Rb or N and w4 and W5 are independently C-Ra or N.
[00328] In an embodiment of the compound of Formula (XIV), w4 is C-Ri, w7 is C-R2, w2 is
C-Rb or N and w3 and W5 are independently C-Ra or N.
[00329] In another embodiment of the compound of Formula (XIV), w4 is C-R2, w7 is C-Ri, w2 is C-Rb or N and w3 and W5 are independently C-Ra or N.
[00330] Another embodiment of the compound of Formula (I) is a compound selected from Formula (II), Formula (III), Formula (IX), Formula (XI) or Formula (XII):
Figure AU2017204248B2_D0005
Figure AU2017204248B2_D0006
Figure AU2017204248B2_D0007
(ix), [00331] or a form thereof.
xw2. N Y^ w7 1 1 11 νγ w7 1 1 II
w4? /N w6 »5 Y w4? /N w6 »5 Y
0 0
(XI), or (xii)
2017204248 22 Jun 2017
[00332] Another embodiment of the compound of Formula (I) is a compound of Formula (II): \ II7 Ws Y o (II)
[00333] or a form thereof.
[00334] (ΠΙ): Another embodiment of the compound of Formula (I) is a compound of Formula \ r w4^ ,w6 Ws Y o (III)
[00335] or a form thereof.
[00336] (IV): Another embodiment of the compound of Formula (I) is a compound of Formula /N 16 W5 Y o (IV)
[00337] or a form thereof.
[00338] Another embodiment of the compound of Formula (I) is a compound of Formula (V): w2 wK Wf J w7 W5 Y o (V)
[00339] or a form thereof.
2017204248 22 Jun 2017
[00340] (VI): Another embodiment of the compound of Formula (I) is a compound of Formula ^/2 wf w7 Κ^γ'™6 o (VI)
[00341] or a form thereof.
[00342] (VII): Another embodiment of the compound of Formula (I) is a compound of Formula w2 w^ r T r »5 Y o (VII)
[00343] or a form thereof.
[00344] (VIII): Another embodiment of the compound of Formula (I) is a compound of Formula wi γ N »5 γ o (VIII)
[00345] or a form thereof.
[00346] (IX): Another embodiment of the compound of Formula (I) is a compound of Formula w3 Y^ w7 1 Ji 11 %'Νγ^ 0 (ix)
[00347] or a form thereof.
2017204248 22 Jun 2017
[00348] Another embodiment of the compound of Formula (I) is a compound of Formula (X): <.W2^N^ w3 r w7 1 i ii N< ,N w6 5 γ o (X)
[00349] or a form thereof
[00350] (XI): Another embodiment of the compound of Formula (I) is a compound of Formula N -w 1 Ji 11 w4.- /N w6 Ws Y o (Xi)
[00351] or a form thereof.
[00352] (ΧΠ): Another embodiment of the compound of Formula (I) is a compound of Formula W;f W7 1 KI 11 W4.- w6 w= Y o (xii)
[00353] or a form thereof.
[00354] (XIII): Another embodiment of the compound of Formula (I) is a compound of Formula „w2. i 1| II w4_. ^N w6 w= Y o (xiii)
[00355] or a form thereof.
2017204248 22 Jun 2017 [00356] Another embodiment of the compound of Formula (I) is a compound of Formula (XIV):
Figure AU2017204248B2_D0008
[00357] or a form thereof.
[00358] An embodiment of the compound of Formula (I), Formula (II), Formula (III), Formula (IV), Formula (V), Formula (VI), Formula (VII), Formula (VIII), Formula (IX), Formula (X), Formula (XI), Formula (XII), Formula (XIII) or Formula (XIV) is a compound selected from Formula (la), Formula (Ila), Formula (Illa), Formula (IVa), Formula (Va), Formula (Via), Formula (Vila), Formula (Villa), Formula (IXa), Formula (Xa), Formula (Xia), Formula (Xlla), Formula (XHIa) or Formula (XlVa), respectively:
Figure AU2017204248B2_D0009
Figure AU2017204248B2_D0010
(Ha), (la),
Figure AU2017204248B2_D0011
2017204248 22 Jun 2017
Rb
Figure AU2017204248B2_D0012
o (IXa),
Figure AU2017204248B2_D0013
Rb
Figure AU2017204248B2_D0014
Ra O (Xa),
Figure AU2017204248B2_D0015
Ra O (XHIa), or
Figure AU2017204248B2_D0016
[00359] or a form thereof.
[00360] In an embodiment of the compound of Formula (la), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and w? is C-R2, provided that, [00361] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00362] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00363] when W4 is C-Ri, then w2 is C-R2 and W3 is C-Ra or N and W6 is C-Rc or N; or, [00364] when W4 is C-R2, then w? is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N.
[00365] In an embodiment of the compound of Formula (Ila), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00366] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00367] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00368] when W4 is C-Ri, then w? is C-R2 and W3 is C-Ra or N and W6 is C-Rc or N; or, [00369] when W4 is C-R2, then w2 is C-Ri and W3 is C-Ra or N and we is C-Rc or N.
[00370] In an embodiment of the compound of Formula (Illa), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00371] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00372] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00373] when W4 is C-Ri, then W7 is C-R2 and W3 is C-Ra or N and we is C-Rc or N; or, [00374] when W4 is C-R2, then w? is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N.
2017204248 22 Jun 2017 [00375] In an embodiment of the compound of Formula (IVa), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then wis C-Ri.
[00376] In an embodiment of the compound of Formula (Va), one of w3 and W6 is C-Ri and the other is C-R2, provided that, when w3 is C-Ri, then W6 is C-R2; or, when w3 is C-R2, then W6 is C-Ri.
[00377] In an embodiment of the compound of Formula (Via), one of w3, W4, we and W7 is C-Ri and one other of w3, W4, W6 and W7 is C-R2, provided that, [00378] when w3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00379] when w3 is C-R2, then we is C-Ri and W4 and W7 are independently C-Ra or N; or, [00380] when W4 is C-Ri, then w? is C-R2 and w3 is C-Ra or N and W6 is C-Rc or N; or, [00381] when W4 is C-R2, then w- is C-Ri and w3 is C-Ra or N and we is C-Rc or N.
[00382] In an embodiment of the compound of Formula (Vila), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then w2 is C-Ri.
[00383] In an embodiment of the compound of Formula (Villa), one of w3 and W6 is C-Ri and the other is C-R2, provided that, when w3 is C-Ri, then W6 is C-R2; or, when w3 is C-R2, then W6 is C-Ri.
[00384] In an embodiment of the compound of Formula (IXa), one of w3, W4, W6 and W7 is C-Ri and one other of w3, W4, we and W7 is C-R2, provided that, [00385] when w3 is C-R,, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00386] when w3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00387] when W4 is C-R,, then w2 is C-R2 and w3 is C-Ra or N and W6 is C-Rc or N; or, [00388] when W4 is C-R2, then w? is C-Ri and w3 is C-Ra or N and W6 is C-Rc or N.
[00389] Tn an embodiment of the compound of Formula (Xa), one of w3 and W6 is C-Ri and the other is C-R2, provided that, when w3 is C-Ri, then w(l is C-R2; or, when w3 is C-R2, then w(1 is C-Ri.
[00390] In an embodiment of the compound of Formula (Xia), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then w2 is C-Ri.
2017204248 22 Jun 2017 [00391] In an embodiment of the compound of Formula (Xlla), one of W3, W4, W6 and W7 is
C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00392] when W3 is C-R,, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00393] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00394] when W4 is C-R,, then w2 is C-R2 and W3 is C-Ra or N and we is C-Rc or N; or, [00395] when W4 is C-R2, then w? is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N.
[00396] In an embodiment of the compound of Formula (XHIa), one of W3 and W6 is C-Ri and the other is C-R2, provided that, when W3 is C-Ri, then W6 is C-R2; or, when W3 is C-R2, then W6 is C-Ri.
[00397] In an embodiment of the compound of Formula (XlVa), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then w? is C-Ri.
[00398] An embodiment of the compound of Formula (I), Formula (II), Formula (III), Formula (IX), Formula (XI) or Formula (XII) is a compound selected from Formula (la), Formula (Ila), Formula (Illa), Formula (IXa), Formula (Xia) or Formula (Xlla), respectively:
Figure AU2017204248B2_D0017
Rb
Figure AU2017204248B2_D0018
Figure AU2017204248B2_D0019
o (IXa),
Figure AU2017204248B2_D0020
(Xia), or
Figure AU2017204248B2_D0021
Figure AU2017204248B2_D0022
(Xlla) [00399] or a form thereof.
[00400] Another embodiment of the compound of Formula (I) is a compound of Formula (la):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0023
[00401] or a form thereof [00402] Another embodiment of the compound of Formula (II) is a compound of Formula (Ila):
Figure AU2017204248B2_D0024
[00403] or a form thereof [00404] Another embodiment of the compound of Formula (III) is a compound of Formula (Illa):
Figure AU2017204248B2_D0025
[00405] or a form thereof.
[00406] (IVa):
Another embodiment of the compound of Formula (IV) is a compound of Formula
2017204248 22 Jun 2017 [00407] [00408] (Va):
Figure AU2017204248B2_D0026
or a form thereof.
Another embodiment of the compound of Formula (V) is a compound of Formula
Figure AU2017204248B2_D0027
[00409] [00410] (Via):
or a form thereof.
Another embodiment of the compound of Formula (VI) is a compound of Formula [00411] or a fomi thereof.
Rb Ra
Figure AU2017204248B2_D0028
O (Via) [00412] Another embodiment of the compound of Formula (VII) is a compound of Formula
2017204248 22 Jun 2017 (Vila):
Figure AU2017204248B2_D0029
[00413] or a form thereof [00414] Another embodiment of the compound of Formula (VIII) is a compound of Formula (Villa):
Figure AU2017204248B2_D0030
[00415] or a form thereof.
[00416] Another embodiment of the compound of Formula (IX) is a compound of Formula (IXa):
Rb
Figure AU2017204248B2_D0031
o (IXa) [00417] or a form thereof.
[00418] Another embodiment of the compound of Formula (X) is a compound of Formula
2017204248 22 Jun 2017 (Xa):
Figure AU2017204248B2_D0032
[00419] or a form thereof.
[00420] Another embodiment of the compound of Formula (XI) is a compound of Formula (Xia):
Figure AU2017204248B2_D0033
[00421] or a form thereof.
[00422] Another embodiment of the compound of Formula (XII) is a compound of Formula (Xlla):
Figure AU2017204248B2_D0034
[00423] or a form thereof.
[00424] Another embodiment of the compound of Formula (XIII) is a compound of Formula (XHla):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0035
[00425] or a form thereof.
[00426] Another embodiment of the compound of Formula (XIV) is a compound of Formula (XlVa):
Figure AU2017204248B2_D0036
[00427] or a form thereof.
[00428] An embodiment of the compound of Formula (la) is a compound of Formula (Ial),
Formula (Ia2), Formula (Ia3) or Formula (Ia4):
Figure AU2017204248B2_D0037
2017204248 22 Jun 2017
Figure AU2017204248B2_D0038
[00429] or a form thereof.
[00430] An embodiment of the compound of Formula (Tla) is a compound of Formula (TTal),
Formula (IIa2), Formula (IIa3) or Formula (IIa4):
Figure AU2017204248B2_D0039
[00431] or a form thereof.
[00432] An embodiment of the compound of Formula (Illa) is a compound of Formula (Illal),
Formula (IIIa2), Formula (IIIa3) or Formula (IIIa4):
Figure AU2017204248B2_D0040
2017204248 22 Jun 2017
Figure AU2017204248B2_D0041
[00433] or a form thereof.
[00434] An embodiment of the compound of Formula (TVa) includes a compound of Formula (IVal) or Formula (IVa2):
Figure AU2017204248B2_D0042
Figure AU2017204248B2_D0043
[00435] or a form thereof.
[00436] An embodiment of the compound of Formula (Va) is a compound of Formula (Vai) or Formula (Va2):
^b ^a
/Ra
R 2 γ γ R
Ra O Ra O
(Vai) or (Va2)
[00437] or a form thereof.
[00438] An embodiment of the compound of Formula (Via) is a compound of Formula (Vial), Formula (Vla2), Formula (Vla3) or Formula (Vla4):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0044
Figure AU2017204248B2_D0045
(VIa4) [00439] or a form thereof.
[00440] An embodiment of the compound of Formula (Vila) includes a compound of Formula (Vllal) or Formula (VIIa2):
Figure AU2017204248B2_D0046
[00441] or a form thereof.
2017204248 22 Jun 2017 [00442] An embodiment of the compound of Formula (Villa) is a compound of Formula (Vlllal) or Formula (Vllla2):
Figure AU2017204248B2_D0047
[00443] or a form thereof.
[00444] An embodiment of the compound of Formula (IXa) is a compound of Formula (IXal), Formula (IXa2), Formula (IXa3) or Formula (IXa4):
Figure AU2017204248B2_D0048
[00445] or a form thereof.
[00446] An embodiment of the compound of Formula (Xa) is a compound of Formula (Xal) or Formula (Xa2):
Figure AU2017204248B2_D0049
Figure AU2017204248B2_D0050
[00447] or a form thereof.
[00448] An embodiment of the compound of Formula (Xia) is a compound of Formula (XIal) or Formula (XIa2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0051
Figure AU2017204248B2_D0052
[00449] or a form thereof.
[00450] An embodiment of the compound of Formula (Xlla) is a compound of Formula (Xllal), Formula (XIIa2), Formula (XIIa3) or Formula (XIIa4):
Figure AU2017204248B2_D0053
(XIIa3) or (XIIa4) [00451] or a form thereof.
[00452] An embodiment of the compound of Formula (XHIa) is a compound of Formula (XHIal) or Formula (XIIIa2):
Figure AU2017204248B2_D0054
[00453] or a form thereof.
[00454] An embodiment of the compound of Formula (XlVa) is a compound of Formula (XlVal) or Formula (XlVa2):
2017204248 22 Jun 2017
Rb Rb
Figure AU2017204248B2_D0055
(XlVal) or (XIVa2) [00455] or a form thereof.
[00456] An embodiment of the compound of Formula (la) is a compound of Formula (Ial):
Figure AU2017204248B2_D0056
[00457] or a form thereof.
[00458] An embodiment of the compound of Formula (la) is a compound of Formula (Ia2):
Figure AU2017204248B2_D0057
(Ia2) [00459] or a form thereof.
[00460] An embodiment of the compound of Formula (la) is a compound of Formula (Ia3):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0058
[00461] or a form thereof [00462] An embodiment of the compound of Formula (la) is a compound of Formula (Ia4):
Figure AU2017204248B2_D0059
(Ia4) [00463] or a form thereof.
[00464] An embodiment of the compound of Formula (Ila) is a compound of Formula (Hal):
Figure AU2017204248B2_D0060
[00465] or a form thereof.
[00466] An embodiment of the compound of Formula (Ila) is a compound of Formula (IIa2):
Figure AU2017204248B2_D0061
[00467] or a form thereof.
[00468]
An embodiment of the compound of Formula (Ila) is a compound of Formula (IIa3):
2017204248 22 Jun 2017 [00469] [00470] or a form thereof.
[00471] [00472] (Illal):
[00473]
Figure AU2017204248B2_D0062
An embodiment of the compound of Formula (Ila) is a compound of Formula (IIa4):
Figure AU2017204248B2_D0063
or a form thereof.
An embodiment of the compound of Formula (Illa) is a compound of Formula
Figure AU2017204248B2_D0064
(Illal) or a form thereof.
[00474] An embodiment of the compound of Formula (Illa) is a compound of Formula
2017204248 22 Jun 2017 (llla2):
Figure AU2017204248B2_D0065
[00475] or a form thereof.
[00476] An embodiment of the compound of Formula (Illa) is a compound of Formula (IIIa3):
Figure AU2017204248B2_D0066
[00477] or a form thereof.
[00478] An embodiment of the compound of Formula (Illa) is a compound of Formula (IIIa4):
Figure AU2017204248B2_D0067
[00479] or a form thereof.
[00480] An embodiment of the compound of Formula (IVa) is a compound of Formula
2017204248 22 Jun 2017 (IVal):
Figure AU2017204248B2_D0068
[00481] or a form thereof.
[00482] An embodiment of the compound of Formula (IVa) is a compound of Formula (IVa2):
Figure AU2017204248B2_D0069
[00483] or a form thereof.
[00484] An embodiment of the compound of Formula (Va) is a compound of Formula (Vai):
Figure AU2017204248B2_D0070
[00485] or a form thereof.
[00486] An embodiment of the compound of Formula (Va) is a compound of Formula (Va2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0071
[00487] or a form thereof.
[00488] An embodiment of the compound of Formula (Via) is a compound of Formula (Vial):
Figure AU2017204248B2_D0072
[00489] or a form thereof.
[00490] An embodiment of the compound of Formula (Via) is a compound of Formula (VIa2):
Figure AU2017204248B2_D0073
[00491] or a form thereof.
[00492] An embodiment of the compound of Formula (Via) is a compound of Formula
Formula (Vla3):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0074
[00493] or a form thereof.
[00494] An embodiment of the compound of Formula (Via) is a compound of Formula (VIa4):
Figure AU2017204248B2_D0075
[00495] or a form thereof.
[00496] An embodiment of the compound of Formula (Vila) is a compound of Formula (Vllal):
Figure AU2017204248B2_D0076
[00497] or a form thereof.
An embodiment of the compound of Formula (Vila) is a compound of Formula
2017204248 22 Jun 2017 [00498] (Vlla2):
[00499] [00500] (VUIal):
Figure AU2017204248B2_D0077
or a form thereof
An embodiment of the compound of Formula (Villa) is a compound of Formula
Figure AU2017204248B2_D0078
(Villa 1) [00501] [00502] (VIIIa2):
or a form thereof.
An embodiment of the compound of Formula (Villa) is a compound of Formula [00503] or a form thereof.
Figure AU2017204248B2_D0079
[00504] (IXal):
An embodiment of the compound of Formula (IXa) is a compound of Formula
2017204248 22 Jun 2017 [00505] [00506] (IXa2):
Figure AU2017204248B2_D0080
or a form thereof.
An embodiment of the compound of Formula (IXa) is a compound of Formula
Figure AU2017204248B2_D0081
[00507] [00508] (IXa3):
or a form thereof.
An embodiment of the compound of Formula (IXa) is a compound of Formula [00509] or a form thereof.
Figure AU2017204248B2_D0082
[00510] An embodiment of the compound of Formula (IXa) is a compound of Formula (!Xa4):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0083
[00511] or a form thereof.
[00512] An embodiment of the compound of Formula (Xa) is a compound of Formula (Xal):
Figure AU2017204248B2_D0084
[00513] or a form thereof.
[00514] An embodiment of the compound of Formula (Xa) is a compound of Formula (Xa2):
Figure AU2017204248B2_D0085
[00515] or a form thereof.
[00516] An embodiment of the compound of Formula (Xia) is a compound of Formula
2017204248 22 Jun 2017 (Xlal):
Figure AU2017204248B2_D0086
[00517] or a form thereof.
[00518] An embodiment of the compound of Formula (Xia) is a compound of Formula (XIa2):
Figure AU2017204248B2_D0087
[00519] or a form thereof.
[00520] An embodiment of the compound of Formula (Xlla) is a compound of Formula (Xllal):
Figure AU2017204248B2_D0088
[00521] or a form thereof.
[00522] An embodiment of the compound of Formula (Xlla) is a compound of Formula
2017204248 22 Jun 2017 (Xlla2):
Figure AU2017204248B2_D0089
[00523] or a form thereof.
[00524] An embodiment of the compound of Formula (Xlla) is a compound of Formula (XIIa3):
Figure AU2017204248B2_D0090
[00525] or a form thereof.
[00526] An embodiment of the compound of Formula (Xlla) is a compound of Formula (XIIa4):
Figure AU2017204248B2_D0091
[00527] or a form thereof.
An embodiment of the compound of Formula (XHIa) is a compound of Formula
2017204248 22 Jun 2017 [00528] (Xlllal):
[00529] [00530] (XIIIa2):
Figure AU2017204248B2_D0092
or a form thereof.
An embodiment of the compound of Formula (XHIa) is a compound of Formula
Figure AU2017204248B2_D0093
[00531] [00532] (XlVal):
or a form thereof.
An embodiment of the compound of Formula (XlVa) is a compound of Formula [00533] or a form thereof.
Figure AU2017204248B2_D0094
[00534] An embodiment of the compound of Formula (XlVa) is a compound of Formula
2017204248 22 Jun 2017 (XIV a2):
[00535] or a form thereof.
Figure AU2017204248B2_D0095
[00536] An embodiment of the compound of Formula (I) is a compound selected from the group consisting of:
Figure AU2017204248B2_D0096
2017204248 22 Jun 2017
Figure AU2017204248B2_D0097
2017204248 22 Jun 2017
Figure AU2017204248B2_D0098
2017204248 22 Jun 2017
Figure AU2017204248B2_D0099
2017204248 22 Jun 2017
Figure AU2017204248B2_D0100
Figure AU2017204248B2_D0101
Figure AU2017204248B2_D0102
Figure AU2017204248B2_D0103
2017204248 22 Jun 2017
Figure AU2017204248B2_D0104
Figure AU2017204248B2_D0105
Figure AU2017204248B2_D0106
ci
Figure AU2017204248B2_D0107
Figure AU2017204248B2_D0108
Figure AU2017204248B2_D0109
Figure AU2017204248B2_D0110
Figure AU2017204248B2_D0111
F
Figure AU2017204248B2_D0112
ci
Figure AU2017204248B2_D0113
Figure AU2017204248B2_D0114
Figure AU2017204248B2_D0115
F
Figure AU2017204248B2_D0116
2017204248 22 Jun 2017
Figure AU2017204248B2_D0117
2017204248 22 Jun 2017
Figure AU2017204248B2_D0118
2017204248 22 Jun 2017
Q/'
lid
rr T AA
Y^Y HN^J O
139
Figure AU2017204248B2_D0119
O' 1
rr Y AA
γΥΥ HN^J O
145
Figure AU2017204248B2_D0120
Figure AU2017204248B2_D0121
Figure AU2017204248B2_D0122
148 9N i
rV
rVir
U^N HN^J WV O
151 F
AA
HN^> U^N o
154
Figure AU2017204248B2_D0123
Figure AU2017204248B2_D0124
156
2017204248 22 Jun 2017
Figure AU2017204248B2_D0125
2017204248 22 Jun 2017
Figure AU2017204248B2_D0126
2017204248 22 Jun 2017
Figure AU2017204248B2_D0127
Figure AU2017204248B2_D0128
Figure AU2017204248B2_D0129
Figure AU2017204248B2_D0130
Figure AU2017204248B2_D0131
Figure AU2017204248B2_D0132
Figure AU2017204248B2_D0133
Figure AU2017204248B2_D0134
Figure AU2017204248B2_D0135
Figure AU2017204248B2_D0136
Figure AU2017204248B2_D0137
Figure AU2017204248B2_D0138
Figure AU2017204248B2_D0139
208
2017204248 22 Jun 2017
Figure AU2017204248B2_D0140
F
Figure AU2017204248B2_D0141
F
Figure AU2017204248B2_D0142
Figure AU2017204248B2_D0143
r^-NH
212
Figure AU2017204248B2_D0144
Figure AU2017204248B2_D0145
Figure AU2017204248B2_D0146
220
Figure AU2017204248B2_D0147
Figure AU2017204248B2_D0148
223
Figure AU2017204248B2_D0149
224
213
Figure AU2017204248B2_D0150
Figure AU2017204248B2_D0151
Figure AU2017204248B2_D0152
2017204248 22 Jun 2017
Figure AU2017204248B2_D0153
Figure AU2017204248B2_D0154
Figure AU2017204248B2_D0155
Figure AU2017204248B2_D0156
Figure AU2017204248B2_D0157
Figure AU2017204248B2_D0158
Figure AU2017204248B2_D0159
2017204248 22 Jun 2017
Figure AU2017204248B2_D0160
Figure AU2017204248B2_D0161
242
Figure AU2017204248B2_D0162
Figure AU2017204248B2_D0163
Figure AU2017204248B2_D0164
Figure AU2017204248B2_D0165
Figure AU2017204248B2_D0166
Figure AU2017204248B2_D0167
Figure AU2017204248B2_D0168
Figure AU2017204248B2_D0169
252
Figure AU2017204248B2_D0170
254
Figure AU2017204248B2_D0171
Figure AU2017204248B2_D0172
Figure AU2017204248B2_D0173
257
Figure AU2017204248B2_D0174
2017204248 22 Jun 2017
Figure AU2017204248B2_D0175
100
2017204248 22 Jun 2017
Figure AU2017204248B2_D0176
274
Figure AU2017204248B2_D0177
\ N—
Figure AU2017204248B2_D0178
Figure AU2017204248B2_D0179
275
Figure AU2017204248B2_D0180
278
Figure AU2017204248B2_D0181
Figure AU2017204248B2_D0182
Figure AU2017204248B2_D0183
Figure AU2017204248B2_D0184
Figure AU2017204248B2_D0185
Figure AU2017204248B2_D0186
101
2017204248 22 Jun 2017
Figure AU2017204248B2_D0187
289
Figure AU2017204248B2_D0188
Figure AU2017204248B2_D0189
Figure AU2017204248B2_D0190
Figure AU2017204248B2_D0191
293
Figure AU2017204248B2_D0192
Figure AU2017204248B2_D0193
Figure AU2017204248B2_D0194
Figure AU2017204248B2_D0195
Figure AU2017204248B2_D0196
306
102
2017204248 22 Jun 2017
Figure AU2017204248B2_D0197
Figure AU2017204248B2_D0198
Figure AU2017204248B2_D0199
Figure AU2017204248B2_D0200
Figure AU2017204248B2_D0201
Figure AU2017204248B2_D0202
103
2017204248 22 Jun 2017
Figure AU2017204248B2_D0203
104
2017204248 22 Jun 2017
Figure AU2017204248B2_D0204
Figure AU2017204248B2_D0205
Figure AU2017204248B2_D0206
Figure AU2017204248B2_D0207
358
Figure AU2017204248B2_D0208
Figure AU2017204248B2_D0209
348
Figure AU2017204248B2_D0210
Figure AU2017204248B2_D0211
Figure AU2017204248B2_D0212
Figure AU2017204248B2_D0213
Figure AU2017204248B2_D0214
359
Figure AU2017204248B2_D0215
105
2017204248 22 Jun 2017
Figure AU2017204248B2_D0216
Figure AU2017204248B2_D0217
Figure AU2017204248B2_D0218
Figure AU2017204248B2_D0219
363
Figure AU2017204248B2_D0220
366
Figure AU2017204248B2_D0221
369
Figure AU2017204248B2_D0222
Figure AU2017204248B2_D0223
Figure AU2017204248B2_D0224
372
Figure AU2017204248B2_D0225
Figure AU2017204248B2_D0226
375
106
2017204248 22 Jun 2017
Figure AU2017204248B2_D0227
Figure AU2017204248B2_D0228
Figure AU2017204248B2_D0229
Figure AU2017204248B2_D0230
Figure AU2017204248B2_D0231
Figure AU2017204248B2_D0232
Figure AU2017204248B2_D0233
Figure AU2017204248B2_D0234
385
Figure AU2017204248B2_D0235
Figure AU2017204248B2_D0236
Figure AU2017204248B2_D0237
Figure AU2017204248B2_D0238
Figure AU2017204248B2_D0239
107
2017204248 22 Jun 2017
Figure AU2017204248B2_D0240
Figure AU2017204248B2_D0241
Figure AU2017204248B2_D0242
Figure AU2017204248B2_D0243
394 395 396
Figure AU2017204248B2_D0244
Figure AU2017204248B2_D0245
Figure AU2017204248B2_D0246
Figure AU2017204248B2_D0247
Figure AU2017204248B2_D0248
Figure AU2017204248B2_D0249
108
2017204248 22 Jun 2017
Figure AU2017204248B2_D0250
Figure AU2017204248B2_D0251
Figure AU2017204248B2_D0252
Figure AU2017204248B2_D0253
Figure AU2017204248B2_D0254
Figure AU2017204248B2_D0255
411
Figure AU2017204248B2_D0256
Figure AU2017204248B2_D0257
Figure AU2017204248B2_D0258
Figure AU2017204248B2_D0259
Figure AU2017204248B2_D0260
Figure AU2017204248B2_D0261
109
2017204248 22 Jun 2017
Figure AU2017204248B2_D0262
Figure AU2017204248B2_D0263
Figure AU2017204248B2_D0264
Figure AU2017204248B2_D0265
Figure AU2017204248B2_D0266
Figure AU2017204248B2_D0267
Figure AU2017204248B2_D0268
Figure AU2017204248B2_D0269
Figure AU2017204248B2_D0270
437
Figure AU2017204248B2_D0271
Figure AU2017204248B2_D0272
435
Figure AU2017204248B2_D0273
110
2017204248 22 Jun 2017
Figure AU2017204248B2_D0274
Figure AU2017204248B2_D0275
Figure AU2017204248B2_D0276
Figure AU2017204248B2_D0277
Figure AU2017204248B2_D0278
Figure AU2017204248B2_D0279
Figure AU2017204248B2_D0280
Figure AU2017204248B2_D0281
Figure AU2017204248B2_D0282
Figure AU2017204248B2_D0283
Figure AU2017204248B2_D0284
111
2017204248 22 Jun 2017
Figure AU2017204248B2_D0285
Figure AU2017204248B2_D0286
Figure AU2017204248B2_D0287
Figure AU2017204248B2_D0288
Figure AU2017204248B2_D0289
Figure AU2017204248B2_D0290
/
Figure AU2017204248B2_D0291
Figure AU2017204248B2_D0292
Figure AU2017204248B2_D0293
Figure AU2017204248B2_D0294
Figure AU2017204248B2_D0295
Figure AU2017204248B2_D0296
112
2017204248 22 Jun 2017
Figure AU2017204248B2_D0297
Figure AU2017204248B2_D0298
Figure AU2017204248B2_D0299
Figure AU2017204248B2_D0300
474
Figure AU2017204248B2_D0301
Figure AU2017204248B2_D0302
Figure AU2017204248B2_D0303
Figure AU2017204248B2_D0304
Figure AU2017204248B2_D0305
479
Figure AU2017204248B2_D0306
Figure AU2017204248B2_D0307
Figure AU2017204248B2_D0308
Figure AU2017204248B2_D0309
Figure AU2017204248B2_D0310
Figure AU2017204248B2_D0311
113
2017204248 22 Jun 2017
Figure AU2017204248B2_D0312
Figure AU2017204248B2_D0313
Figure AU2017204248B2_D0314
Figure AU2017204248B2_D0315
Figure AU2017204248B2_D0316
Figure AU2017204248B2_D0317
114
2017204248 22 Jun 2017
Figure AU2017204248B2_D0318
115
2017204248 22 Jun 2017 /
Figure AU2017204248B2_D0319
Figure AU2017204248B2_D0320
Figure AU2017204248B2_D0321
Figure AU2017204248B2_D0322
Figure AU2017204248B2_D0323
Figure AU2017204248B2_D0324
Figure AU2017204248B2_D0325
Figure AU2017204248B2_D0326
533
Figure AU2017204248B2_D0327
Figure AU2017204248B2_D0328
Figure AU2017204248B2_D0329
Figure AU2017204248B2_D0330
528
Figure AU2017204248B2_D0331
Figure AU2017204248B2_D0332
534
Figure AU2017204248B2_D0333
116
2017204248 22 Jun 2017
Figure AU2017204248B2_D0334
117
2017204248 22 Jun 2017
Figure AU2017204248B2_D0335
Figure AU2017204248B2_D0336
Figure AU2017204248B2_D0337
Figure AU2017204248B2_D0338
Figure AU2017204248B2_D0339
Figure AU2017204248B2_D0340
Figure AU2017204248B2_D0341
Figure AU2017204248B2_D0342
Figure AU2017204248B2_D0343
Figure AU2017204248B2_D0344
118
2017204248 22 Jun 2017
Figure AU2017204248B2_D0345
Figure AU2017204248B2_D0346
Figure AU2017204248B2_D0347
Figure AU2017204248B2_D0348
575
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2017204248 22 Jun 2017 [00537] or a form thereof
TERMINOLOGY [00538] The chemical terms used above and throughout the description herein, unless specifically defined otherwise, shall be understood by one of ordinary skill in the art to have the following indicated meanings.
[00539] As used herein, the term “Ci-8alkyl” generally refers to saturated hydrocarbon radicals having from one to eight carbon atoms in a straight or branched chain configuration, including, but not limited to, methyl, ethyl, n-propyl (also referred to as propyl or propanyl), isopropyl, n-butyl (also referred to as butyl or butanyl), isobutyl, sec-butyl, tert-butyl, n-pentyl (also referred to as pentyl or pentanyl), n-hexyl (also referred to as hexyl or hexanyl), n-heptyl (also referred to as heptyl or heptanyl), n-octyl and the like. In some embodiments, Ci_8alkyl includes, but is not limited to, Ci^alkyl, Ci_4alkyl and the like. A Ci-salkyl radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00540] As used herein, the term “C2-8alkenyl” generally refers to partially unsaturated hydrocarbon radicals having from two to eight carbon atoms in a straight or branched chain configuration and one or more carbon-carbon double bonds therein, including, but not limited to, ethenyl (also referred to as vinyl), allyl, propenyl and the like. In some embodiments, C2-8alkenyl includes, but is not limited to, C2-6alkenyl, C2-4alkenyl and the like. A C2-8alkenyl radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00541] As used herein, the term “C2-8alkynyl” generally refers to partially unsaturated hydrocarbon radicals having from two to eight carbon atoms in a straight or branched chain configuration and one or more carbon-carbon triple bonds therein, including, but not limited to, ethynyl, propynyl, butynyl and the like. In some embodiments, C2-8alkynyl includes, but is not limited to, C2-6alkynyl, C2-4alkynyl and the like. A C2-8alkynyl radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00542] As used herein, the term “Ci-8alkoxy” generally refers to saturated hydrocarbon radicals having from one to eight carbon atoms in a straight or branched chain configuration of the formula: -O-Ci-8alkyl, including, but not limited to, methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy, tert-butoxy, n-pentoxy, n-hexoxy and the like. In some
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2017204248 22 Jun 2017 embodiments, C|.salkoxy includes, but is not limited to, CYalkoxy, C|.salkoxy and the like. A Ci-salkoxy radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00543] As used herein, the term “C3-i4cycloalkyl” generally refers to a saturated or partially unsaturated monocyclic, bicyclic or polycyclic hydrocarbon radical, including, but not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexenyl, cycloheptyl, cyclooctyl,
I //-indanyl, indenyl, tetrahydro-naphthalenyl and the like. In some embodiments, C3-i4cycloalkyl includes, but is not limited to, C3_scycloalkyl, Cs-gcycloalkyl, C3_iocycloalkyl and the like. A C3-i4cycloalkyl radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00544] As used herein, the term “aryl” generally refers to a monocyclic, bicyclic or polycyclic aromatic carbon atom ring structure radical, including, but not limited to, phenyl, naphthyl, anthracenyl, fluorenyl, azulenyl, phenanthrenyl and the like. An aryl radical is optionally substituted with substituent species as described herein where allowed by available valences.
[00545] As used herein, the term “heteroaryl” generally refers to a monocyclic, bicyclic or polycyclic aromatic carbon atom ring structure radical in which one or more carbon atom ring members have been replaced, where allowed by structural stability, with one or more heteroatoms, such as an O, S or N atom, including, but not limited to, furanyl (also referred to as furyl), thienyl (also referred to as thiophenyl), pyrrolyl, 2//-pyrrolyl, 3//-pyrrolyl, pyrazolyl, 177-pyrazolyl, imidazolyl, \H-imidazolyl, isoxazolyl, isothiazolyl, oxazolyl, 1,3-thiazolyl, triazolyl (such as 1 //-1,2,3-triazolyl and the like), oxadiazolyl (such as 1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl and the like), thiadiazolyl, tetrazolyl (such as l//-tetrazolyl, 2//-tetrazolyl and the like), pyridinyl (also referred to as pyridyl), pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, indolyl, 177-indolyl, indazolyl, 1 H-indazolyl, 2H-indazolyl, indolizinyl, isoindolyl, benzo furanyl, bcnzothicnyl (also referred to as bcnzothiophcnyl), benzoimidazolyl, 1/7-bcnzoimidazolyl, 1,3-benzothiazolyl, 1,3-benzoxazolyl (also referred to as 1,3-benzooxazolyl), purinyl, 9/7-purinyl, quinolinyl, isoquinolinyl, quinazolinyl, quinoxalinyl, 1,3-diazinyl, 1,2-diazinyl, 1,2-diazolyl, 1,4-diazanaphthalenyl, acridinyl, furo[3,2-6]pyridinyl, furo[3,2-c]pyridinyl, furo[2,3-c]pyridinyl, 6/f-thieno[2,3-6]pyrrolyl, thieno[3,2-c]pyridinyl, thieno[2,3-J]pyrimidinyl, l//-pyrrolo[2,3-6]pyridinyl, l//-pyrrolo[2,3-c]pyridinyl, l/7-pyrrolo[3,2-0]pyridinyl,
137
2017204248 22 Jun 2017 pyrrolo [ 1,2-a]pyrazinyl, pyrro lo [ 1,2-6]pyridazinyl, pyrazolo [1,5 -ajpyridinyl, pyrazolo[l,5-u]pyrazinyl, imidazo[l,2-u]pyridinyl, 3//-imidazo[4,5-6]pyridinyl, imidazo[ 1,2-a]pyrimidinyl, imidazo[ 1,2-c]pyrimidinyl, imidazo[ 1,2-/?]pyridaziny 1, imidazo[l,2-a]pyrazinyl, imidazo [2,1 -h][l ,3]thiazolyl, imidazo[2,1 -6][l,3,4]thiadiazolyl, [l,2,4]triazolo[l,5-a]pyridinyl, [l,2,4]triazolo[4,3-a]pyridinyl and the like. A heteroaryl radical is optionally substituted on a carbon or nitrogen atom ring member with substituent species as described herein where allowed by available valences.
[00546] As used herein, the term “heterocyclyl” generally refers to a saturated or partially unsaturated monocyclic, bicyclic or polycyclic carbon atom ring structure radical in which one or more carbon atom ring members have been replaced, where allowed by structural stability, with a heteroatom, such as an O, S or N atom, including, but not limited to, oxiranyl, oxetanyl, azetidinyl, tetrahydro furanyl, pyrrolinyl, pyrrolidinyl, pyrazolinyl, pyrazolidinyl, imidazolinyl, imidazolidinyl, isoxazolinyl, isoxazolidinyl, isothiazolinyl, isothiazolidinyl, oxazolinyl, oxazolidinyl, thiazolinyl, thiazolidinyl, triazolinyl, triazolidinyl, oxadiazolinyl, oxadiazolidinyl, thiadiazo liny 1, thiadiazo lidinyl, tetrazolinyl, tetrazolidinyl, pyranyl, dihydro-2//-pyranyl. thiopyranyl, 1,3-dioxanyl, 1,2,5,6-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl, piperidinyl, piperazinyl, morpholinyl, thiomorpholinyl, 1,4-diazepanyl, 1,3-benzodioxolyl (also referred to as benzo[t/][l,3]dioxolyl), 1,4-benzodioxanyl, 2,3-dihydro-l,4-benzodioxinyl (also referred to as 2,3-dihydrobenzo[6][l,4]dioxinyl), hexahydropyrrolo[3,4-0]pyrro 1-( 17Z)-yl, (3a1S',6a5)-hexahydropyrrolo[3,4-b]pyrrol-(17f)-yl, (3a7?,6a7?)-hexahydropyrrolo[3,4-0]pyrrol-(l/Z)-yl, hexahydropyrrolo[3,4-6]pyrrol-(2/f)-yl, (3a5,6a5)-hexahydropyrrolo[3,4-h]pyrrol-(2/f)-yl, (3aJ?,6a7?)-hexahydropyrrolo[3,4-Z>]pyrrol-(2/7)-yl, hexahydropyrrolo[3,4-c]pyrrol-(l//)-yl, (3aR,6a>S)-hexahydropyrrolo[3,4-c]pyrrol-(17Z)-yl, (3a7?,6a7?)-hexahydropyrrolo[3,4-c]pyrrol-(177)-yl, octahydro-577-pyrrolo[3,2-c]pyridinyl, octahydro-6/7-pyrrolo[3,4-h]pyridinyl, (4a7?,7a7?)-octahydro-6/f-pyrrolo[3,4-h]pyridinyl, (4a5,7a5)-octahydro-6/f-pyrrolo[3,4-h]pyridinyl, hexahydropyrrolo[l,2-a]pyrazin-(lH)-yl, (77?,8a1S)-hexahydropyrrolo[l,2-a]pyrazin-(177)-yl, (8a5)-hexahydropyrrolo[l,2-a]pyrazm-(l/7)-yl, (8a7?)-hexahydropyrrolo[l,2-u]pyrazin-(177)-yl, (8alS)-octahydropyrrolo[l,2-a]pyrazin-(l/Z)-yl, (8aJ?)-octahydropyrrolo[l,2-a]pyrazin-(l/7)-yl, hexahydropyrrolo[ 1,2-a]pyrazin-(2/Z)-one, octahydro-2/7-pyrido[ 1,2-u]pyrazinyl,
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2017204248 22 Jun 2017
3-azabicyclo[3.1.0]hexyl, (17?,55)-3-azabicyclo[3.1.0]hexyl, 8-azabicyclo[3.2.1 ]octyl, (l/?,55)-8-azabicyclo[3.2.1]octyl, 8-azabicyclo[3.2.1]oct-2-enyl, (17?,55)-8-azabicyclo[3.2.1]oct-2-enyl, 9-azabicyclo[3.3.1]nonyl, (17?,55)-9-azabicyclo[3.3.1]nonyl, 2,5-diazabicyclo[2.2.1]heptyl, (15,45)-2,5-diazabicyclo[2.2.1]heptyl, 2,5-diazabicyclo[2.2.2]octyl, 3,8-diazabicyclo[3.2.1]octyl, (17?,55)-3,8-diazabicyclo[3.2.1]octyl, l,4-diazabicyclo[3.2.2]nonyl, azaspiro[3.3]heptyl,
2.6- diazaspiro[3.3]heptyl, 2,7-diazaspiro[3.5]nonyl, 5,8-diazaspiro[3.5]nonyl,
2.7- diazaspiro[4.4]nonyl, 6,9-diazaspiro[4.5]decyl and the like. A heterocyclyl radical is optionally substituted on a carbon or nitrogen atom ring member with substituent species as described herein where allowed by available valences.
[00547] As used herein, the term “Ci-salkoxy-Ci-salkyl” refers to a radical of the formula: -C i -8alkyl-O-C i -salkyl.
[00548] As used herein, the term “Ci-salkoxy-Ci-salkyl-amino” refers to a radical of the formula: -NH-C i -salkyl-O-C i -salkyl.
[00549] As used herein, the term “(Ci-salkoxy-Ci-salkyl)2-amino” refers to a radical of the formula: -N(Ci-salkyl-O-Ci-8alkyl)2.
[00550] As used herein, the term “Ci-salkoxy-Ci-salkyl-amino-Ci-salkoxy” refers to a radical of the formula: -O-Ci-salkyl-NH-Ci-salkyl-O-Ci-salkyl.
[00551] As used herein, the term “(Ci-salkoxy-Ci-salkylfr-amino-Ci-salkoxy” refers to a radical of the formula: -O-Ci-salkyl-N(Ci-salkyl-O-Ci-salkyl)2.
[00552] As used herein, the term “(Ci-salkoxy-Ci.salkyl)(Ci-salkyl)amino-Ci-salkoxy” refers to a radical of the formula: -O-Ci-salkyl-N(Ci-8alkyl)(Ci-8alkyl-O-Ci.salkyl).
[00553] As used herein, the term “Ci-salkoxy-Ci-salkyl-amino-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-NH-Ci-salkyl-O-Ci-salkyl.
[00554] As used herein, the term “(Ci-salkoxy-Ci-8alkyl)2-amino-Ci-8alkyl” refers to a radical of the formula: -Ci-8alkyl-N(Ci-8alkyl-O-Ci-salkyl)2.
[00555] As used herein, the term “(C|-salkoxy-C|-salkyl)(C|-salkyl)amino-C|-saikyf’ refers to a radical of the formula: -Ci-salkyl-N(Ci-8alkyl)(C]-8alkyl-O-Ci-8alkyl).
[00556] As used herein, the term “Ci-salkoxy-carbonyl” refers to a radical ofthe formula: -C(O)-O-Ci-8alkyl.
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2017204248 22 Jun 2017 [00557] As used herein, the term “CYalkoxy-carbonyl-CYalkenyl” refers to a radical of the formula: -C2.salkenyl-C(O)-O-Ci-salkyl.
[00558] As used herein, the term “Ci-salkoxy-carbonyl-amino” refers to a radical of the formula: -NH-C(O)-O-Ci_salkyl.
[00559] As used herein, the term “Ci-salkyl-amino” refers to a radical of the formula: -NH-Ci-salkyl.
[00560] As used herein, the term “(Ci-8alkyl)2-amino” refers to a radical ofthe formula: -N(Ci.8alkyl)2.
[00561] As used herein, the term “Ci-salkyl-amino-C2-salkenyl” refers to a radical of the formula: -C2_salkenyl-NH-Ci-salkyl.
[00562] As used herein, the term “(Ci-8alkyl)2-amino-C2-salkenyl” refers to a radical of the formula: -C2-salkenyl-N(C 1 -salkyl)2.
[00563] As used herein, the term “Ci-salkyl-amino-Ci-salkoxy” refers to a radical ofthe formula: -O-C i -salkyl-NH-C i -salkyl.
[00564] As used herein, the term “(Ci-8alkyl)2-amino-Ci-salkoxy” refers to a radical ofthe formula: -O-C i -salkyl-N(C i -salkyl)2.
[00565] As used herein, the term “Ci-salkyl-amino-Ci -salkyl” refers to a radical of the formula: -Ci-salkyl-NH-Ci-salkyl.
[00566] As used herein, the term “(Ci-8alkyl)2-amino-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-N(Ci-8alkyl)2.
[00567] As used herein, the term “Ci-salkyl-amino-Ci-salkyl-amino” refers to a radical ofthe formula: -NH-C i -salkyl-NH-C i -salkyl.
[00568] As used herein, the term “(Ci-salkyl)2-amino-Ci-salkyl-amino” refers to a radical of the formula: -NH-Ci-salkyl-N(Ci-salkyl)2.
[00569] As used herein, the term “(Ci-8alkyl-amino-Ci-8alkyl)2-amino” refers to a radical of the formula: -N(Ci-salkyl-NH-Ci-salkyl)2.
[00570] As used herein, the term “[(Ci.salkyl)2-amino-Ci-salkyl]2-amino” refers to a radical of the formula: -N[Ci-salkyl-N(Ci-salkyl)2]2.
[00571] As used herein, the term “(Ci-8alkyl-amino-Ci.salkyl)(Ci-8alkyl)amino” refers to a radical ofthe formula: -N(Ci.8alkyl)(Ci.8alkyl-NH-Ci-salkyl).
140
2017204248 22 Jun 2017 [00572] As used herein, the term “[(Ci_8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino” refers to a radical of the formula: -N(Ci.8alkyl)[Ci-8alkyl-N(Ci^alkyl)2].
[00573] As used herein, the term “Ci-8alkyl-amino-C2-8alkynyl” refers to a radical of the formula: -C2_8alkynyl-NH-Ci-8alkyl.
[00574] As used herein, the term “(Ci-8alkyl)2-amino-C2-8alkynyl” refers to a radical of the formula: -C2.salkynyl-N(C i -salkyl)2.
[00575] As used herein, the term “Ci-salkyl-carbonyl” refers to a radical ofthe formula: -C(O)-Ci.8alkyl.
[00576] As used herein, the term “Ci-salkyl-carbonyl-amino” refers to a radical ofthe formula: -NH-C(O)-Ci_salkyl.
[00577] As used herein, the term “Ci-salkyl-thio” refers to a radical of the formula: -S-Ci.8alkyl.
[00578] As used herein, the term “amino-C2.8alkenyl” refers to a radical ofthe formula: -C2_8alkenyl-NH2.
[00579] As used herein, the term “amino-Ci-salkoxy” refers to a radical of the formula: -O-Ci.8alkyl-NH2.
[00580] As used herein, the term “amino-Ci-salkyl” refers to a radical ofthe formula: -Ci-8alkyl-NH2.
[00581] As used herein, the term “amino-Ci-salkyl-amino” refers to a radical ofthe formula: -NH-Ci.8alkyl-NH2.
[00582] As used herein, the term “(amino-Ci-salkyl)2-amino” refers to a radical of the formula: -N(Ci-salkyl-NH2)2.
[00583] As used herein, the term “(amino-Ci-8alkyl)(Ci-salkyl)amino” refers to a radical ofthe formula: -N(C, -salkyl)(C i .salkyl-NH2).
[00584] As used herein, the term “amino-C2-salkynyl” refers to a radical ofthe formula: -C2-8alkynyl-NH2.
[00585] As used herein, the term “aryl-Ci-salkoxy-carbonyl” refers to a radical of the formula: -C(O)-O-Ci_8alkyl-aryl.
[00586] As used herein, the term “aryl-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-aryl.
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2017204248 22 Jun 2017 [00587] As used herein, the term “aryl-Ci-salkyl-amino” refers to a radical of the formula: -NH-C i .salkyl-aryl.
[00588] As used herein, the term “(aryl-Ci-salkyfo-amino” refers to a radical of the formula: -N(C]-8alkyl-aryl)2.
[00589] As used herein, the term “(aryl-Ci-salkyl)(Ci-salkyl)amino” refers to a radical of the formula: -N(Ci-8alkyl)(Ci-salkyl-aryl).
[00590] As used herein, the term “aryl-Ci-salkyl-amino-Ci-salkyl” refers to a radical of the formula: -C i .salkyl-NH-C i .salkyl-aryl.
[00591] As used herein, the term “(aryl-Ci-salkyfo-amino-Ci-salkyl” refers to a radical of the formula: -C i _8alkyl-N(C i -salkyl-ary 1)2.
[00592] As used herein, the term “(aryl-Ci-salkyl)(Ci.8alkyl)amino-Ci-salkyr refers to a radical of the formula: -Ci-salkyl-N(Ci.8alkyl)(Ci.8alkyl-aryl).
[00593] As used herein, the term “aryl-amino” refers to a radical of the formula: -NH-aryl. [00594] As used herein, the term “aryl-amino-carbonyl” refers to a radical of the formula: -C(O)-NH-aryl.
[00595] As used herein, the term “aryl-sulfonyloxy-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-O-SCh-aryl.
[00596] As used herein, the term “benzoxy-carbonyl” refers to a radical of the formula: -C(O)-O-CH2-phenyl.
[00597] As used herein, the term “Cs-ucycloalkyl-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-C3-i4cycloalkyl.
[00598] As used herein, the term “C3-i4Cycloalkyl-amino” refers to a radical of the formula: -NH-Cs-Mcycloalkyl.
[00599] As used herein, the term “C3-i4cycloalkyl-oxy” refers to a radical of the formula: -O-Cs-Mcycloalkyl.
[00600] As used herein, the term “halo” or “halogen” generally refers to a halogen atom radical, including fluoro, chloro, bromo and iodo.
[00601] As used here hi, the term “halo-C 1. salkoxy” refers to a radical of the formula: -O-C]-8alkyl-halo, wherein Ci-salkyl is partially or completely substituted with one or more halogen atoms where allowed by available valences.
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2017204248 22 Jun 2017 [00602] As used herein, the term “halo-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-halo, wherein Ci-salkyl is partially or completely substituted with one or more halogen atoms where allowed by available valences.
[00603] As used herein, the term “halo-Ci-salkyl-amino” refers to a radical of the formula: -NH-C i -salkyl-halo.
[00604] As used herein, the term “(halo-Ci-8alkyl)(Ci-8alkyl)amino” refers to a radical of the formula: -N(Ci-8alkyl)(Ci-8alkyl-halo).
[00605] As used herein, the term “(halo-Ci-8alkyl)2-amino” refers to a radical of the formula: -N(Ci_8alkyl-halo)2.
[00606] As used herein, the term “heteroaryl-C i-salkoxy” refers to a radical of the formula: -O-Ci_8alkyl-heteroaryl.
[00607] As used herein, the term “heteroaryl-C ι-salkyl” refers to a radical of the formula: -Ci_8alkyl-heteroaryl.
[00608] As used herein, the term “heteroaryl-C i-salkyl-amino” refers to a radical of the formula: -NH-C,_salky 1-heteroaryl,.
[00609] As used herein, the term “(heteroaryl-C i-salkyl)2-amino” refers to a radical of the formula: -N(Ci-salkyl-heteroaryl)2.
[00610] As used herein, the term “(heteroaryl-Ci_8alkyl)(Ci-8alkyl)amino” refers to a radical of the formula: -N(Ci_8alkyl)(Ci-8alkyl-heteroaryl).
[00611] As used herein, the term “heteroaryl-Ci-salkyl-amino-Ci-salkyl” refers to a radical of the formula: -Cj.salkyl-NH-Cj.salkyl-hctcroaryl.
[00612] As used herein, the term “(heteroaryl-Ci-salkylF-amino-Ci-salkyl” refers to a radical of the formula: -Ci-8alkyl-N(Ci-salkyl-heteroaryl)2.
[00613] As used herein, the term “(heteroaryl-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8aIkyl” refers to a radical of the formula: -Ci-salkyl-N(Ci.8alkyl)(Ci.8alkyl-heteroaryl).
[00614] As used herein, the term “heteroaryl-amino” refers to a radical of the formula: -NH-heteroaryl.
[00615] As used herein, the term “heterocyclyl-Ci-salkoxy” refers to a radical ofthe formula: -O-Ci_8alkyl-heterocyclyl.
[00616] As used herein, the term “heterocyclyl-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-heterocyclyl.
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2017204248 22 Jun 2017 [00617] As used herein, the term “heterocyclyl-Ci-salkyl-amino” refers to a radical of the formula: -NH-Ci-salkyl-heterocyclyl.
[00618] As used herein, the term “(heterocyclyl-Ci-8alkyl)2-amino” refers to a radical of the formula: -N(Ci-salkyl-heterocyclyl)2.
[00619] As used herein, the term “(heterocyclyl-Ci.salkyl)(Ci-salkyl)amino” refers to a radical of the formula: -N(Ci-8alkyl)(Ci-salkyl-heterocyclyl).
[00620] As used herein, the term “heterocyclyl-Ci-salkyl-amino-Ci.salkyl” refers to a radical of the formula: -Ci-salkyl-NH-Ci-salkyl-heterocyclyl.
[00621] As used herein, the term “(heterocyclyl-Ci-salkylfr-amino-Ci-salkyl” refers to a radical of the formula: -Ci_8alkyl-N(Ci_8alkyl-heterocyclyl)2.
[00622] As used herein, the term “(heterocyclyl-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8alkyl” refers to a radical of the formula: -Ci_8alkyl-N(Ci.8alkyl)(Ci.8alkyl-heterocyclyl).
[00623] As used herein, the term “heterocyclyl-amino” refers to a radical of the formula: -NH-heterocyclyl.
[00624] As used herein, the term “(heterocyclyl)(Ci_8alkyl)amino” refers to a radical ofthe formula: -N(Ci-salkyl)(heterocyclyl).
[00625] As used herein, the term “heterocyclyl-amino-C|.salkyl” refers to a radical ofthe formula: -Ci-salkyl-NH-heterocyclyl.
[00626] As used herein, the term “heterocyclyl-carbonyl” refers to a radical of the formula: -C(O)-heterocyclyl.
[00627] As used herein, the term “heterocyclyl-carbonyl-oxy” refers to a radical of the formula: -O-C(O)-heterocyclyl.
[00628] As used herein, the term “heterocyclyl-oxy” refers to a radical ofthe formula: -O-heterocyclyl.
[00629] As used herein, the term “hydroxy” refers to a radical of the formula: -OH.
[00630] As used herein, the term “hydroxy-Ci-salkoxy-Ci-salkyl” refers to a radical of the formula: -C i _salkyl-O-C i .salkyl-OH.
[00631] As used here hi, the term “hydroxy-Ci-salkyl” refers to a radical of the formula: -Ci-salkyl-OH, wherein Ci-salkyl is partially or completely substituted with one or more hydroxy radicals where allowed by available valences.
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2017204248 22 Jun 2017 [00632] As used herein, the term “hydroxy-C i-salkyl-amino” refers to a radical of the formula: -NH-Ci.8alkyl-OH.
[00633] As used herein, the term “(hydroxy-C i -salky l)2-amino” refers to a radical of the formula: -N(Ci-salkyl-OH)2.
[00634] As used herein, the term “(hydroxy-Ci-salkyl)(Ci-salkyl)amino” refers to a radical of the formula: -N(Ci-salkyl)(Ci-salkyl-OH).
[00635] As used herein, the term “hydroxy-Ci-salkyl-amino-Ci-salkyl” refers to a radical of the formula: -Ci.8alkyl-NH-Ci.salkyl-OH.
[00636] As used herein, the term “(hydroxy-Ci-salkylfr-amino-Ci-salkyl” refers to a radical of the formula: -Ci_8alkyl-N(Ci-8alkyl-OH)2.
[00637] As used herein, the term “(hydroxy-Ci-salkyl)(Ci-salkyl)amino-Ci.8alkyl” refers to a radical of the formula: -Ci-salkyl-N(Ci-8alkyl)(Ci-8alkyl-OH).
[00638] As used herein, the term “hydroxy-Ci-salkyl-amino-Ci-salkoxy” refers to a radical of the formula: -O-Ci-salkyl-NH-Ci-salkyl-OH.
[00639] As used herein, the term “(hydroxy-Ci-salkylft-amino-Ci-salkoxy’· refers to a radical of the formula: -O-Ci_8alkyl-N(Ci-8alkyl-OH)2.
[00640] As used herein, the term “(hydroxy-C i-salkyl)(Ci-8alkyl)amino-C|.8alkoxy” refers to a radical of the formula: -O-Ci-8alkyl-N(Ci_8alkyl)(Ci-8alkyl-OH).
[00641] As used herein, the term “hydroxy-Ci-salkyl-amino-Ci-salkyl-amino” refers to a radical of the formula: -NH-Ci-salkyl-NH-Ci-salkyl-OH.
[00642] As used herein, the term “(hydroxy-Ci-salkyl-amino-Ci-salkylfr-amino” refers to a radical of the formula: -N(Ci-8alkyl-NH-Ci-8alkyl-OH)2.
[00643] As used herein, the term “(hydroxy-Ci-salkylft-amino-Ci-salkyl-amino” refers to a radical of the formula: -NH-Ci-8alkyl-N(Ci-8alkyl-OH)2.
[00644] As used herein, the term “(hydroxy-Ci-salkyl-amino-Ci-8alkyl)(Ci-8alkyl)amino” refers to a radical of the formula: -N(Ci-salkyl)(Ci. salkyl-NH-Ci -salky 1-OH).
[00645] As used herein, the term “[(hydroxy-Ci-8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino” refers to a radical of the formula: -N(Ci-8alkyl)[Ci.8alkyl-N(Ci-salkyl-OH)2].
[00646] As used herein, the term “(hydroxy-Ci-salkyl)(Ci-salkyl)amino-Ci.8alkyl-amino'” refers to a radical of the formula: -NH-Ci.8alkyl-N(Ci_8alkyl,Ci-8alkyl-OH).
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2017204248 22 Jun 2017 [00647] As used herein, the term “[(hydroxy-Ci.8alkyl)(Ci.8alkyl)amino-Ci-8alkyl](Ci.8alkyl)amino” refers to a radical of the formula: -N(C i -8alkyl) [C i _8alkyl-N(C i-8alkyl)(C i .8alkyl-OH)].
[00648] As used herein, the term “substituent” means positional variables on the atoms of a core molecule that are attached at a designated atom position, replacing one or more hydrogen atoms on the designated atom, provided that the atom of attachment does not exceed the available valence or shared valences, such that the substitution results in a stable compound. Accordingly, combinations of substituents and/or variables are permissible only if such combinations result in stable compounds. It should also be noted that any carbon as well as heteroatom with a valence level that appears to be unsatisfied as described or shown herein is assumed to have a sufficient number of hydrogen atom(s) to satisfy the valences described or shown.
[00649] For the purposes of this description, where one or more substituent variables for a compound of Formula (I) encompass functionalities incorporated into a compound of Formula (I), each functionality appearing at any location within the disclosed compound may be independently selected, and as appropriate, independently and/or optionally substituted.
[00650] As used herein, the terms “independently selected,” or “each selected” refer to functional variables in a substituent list that may be attached more than once on the structure of a core molecule, where the pattern of substitution at each occurrence is independent of the pattern at any other occurrence. Further, the use of a generic substituent on a core structure for a compound provided herein is understood to include the replacement of the generic substituent with specie substituents that are included within the particular genus, e.g., aryl may be independently replaced with phenyl or naphthalenyl (also referred to as naphthyl) and the like, such that the resulting compound is intended to be included within the scope of the compounds described herein.
[00651] As used herein, the term “each instance of’ when used in a phrase such as “. ..aryl, aryl-Ci_8alkyl, heterocyclyl and heterocyclyl-Ci-salkyl, wherein each instance of aryl and heterocyclyl is optionally substituted with one or two substituents...” is intended to include optional, independent substitution on each of the aryl and heterocyclyl rings and on the aryl and heterocyclyl portions of aryl-Ci .«alkyl and heterocyclyl-Ci-salkyl.
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2017204248 22 Jun 2017 [00652] As used herein, the term “optionally substituted” means that the specified substituent variables, groups, radicals or moieties represent the scope of the genus and may be independently chosen as needed to replace one or more hydrogen atoms on the designated atom of attachment of a core molecule.
[00653] As used herein, the terms “stable compound’ or “stable structure” mean a compound that is sufficiently robust to be isolated to a useful degree of purity from a reaction mixture and formulations thereof into an efficacious therapeutic agent.
[00654] Compound names provided herein were obtained using ACD Labs Index Name software provided by ACD Labs and/or ChemDraw Ultra software provided by CambridgeSoft®. When the compound name disclosed herein conflicts with the structure depicted, the structure shown will supercede the use of the name to define the compound intended. Nomenclature for substituent radicals defined herein may differ slightly from the chemical name from which they are derived; one skilled in the art will recognize that the definition of the substituent radical is intended to include the radical as found in the chemical name.
[00655] The term “SMN,” unless otherwise specified herein, refers to the human SMN1 gene, DNA or RNA, and/or human SMN2 gene, DNA or RNA. In a specific embodiment, the term “SMN1” refers to the human SMN 1 gene, DNA or RNA. In another specific embodiment, the term “SMN2” refers to the human SMN2 gene, DNA or RNA.
[00656] Nucleic acid sequences for the human SMN1 and SMN2 genes are known in the art. For nucleic acid sequences of human SMN1, see, e.g., GenBank Accession Nos. DQ894095, NM_000344, NM_022874, and BC062723. For nucleic acid sequences of human SMN2, see, e.g., NM—022875, NM-022876, NM-022877, NM-017411, DQ894734 (Life Technologies, Inc. (formerly Invitrogen), Carlsbad, Calif.), BC000908, BC070242, CR595484, CR598529, CR609539, U21914, and BC015308.
[00657] The SMN1 gene can be found on the forward strand of human chromosome 5 from approximately nucleotide 70,220,768 to approximately nucleotide 70,249,769. The approximate locations of exons 6, 7 and 8 and introns 6 and 7 of SMN1 on human chromosome 5 are as follows:
[00658] 70,241,893 to 70,242,003 exon 6;
[00659] 70,242,004 to 70,247,767 intron 6;
[00660] 70,247,768 to 70,247,821 exon 7;
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2017204248 22 Jun 2017 [00661] 70,247,822 to 70,248,265 intron 7; and, [00662] 70,248,266 to 70,248,839 exon 8.
[00663] The SMN2 gene can be found on the forward strand of human chromosome 5 from approximately nucleotide 69,345,350 to approximately nucleotide 69,374,349.
[00664] The approximate locations of exons 6, 7 and 8 and introns 6 and 7 of SMN2 on human chromosome 5 are as follows:
[00665] 69,366,468 to 69,366,578 exon 6;
[00666] 69,366,579 to 69,372,347 intron 6;
[00667] 69,372,348 to 69,372,401 exon 7;
[00668] 69,372,402 to 69,372,845 intron 7; and, [00669] 69,372,846 to 69,373,419 exon 8.
[00670] In specific embodiments, the nucleotide sequences delineated above for exons 6, 7 and 8 and introns 6 and 7 of SMN1 are used in the SMN1 minigene nucleic acid constructs described herein. In other specific embodiments, the nucleotide sequences of exons 6, 7 and 8 and introns 6 and 7 of SMN2 in the examples provided herein are used in the SMN2 minigene nucleic acid constructs described herein.
[00671] The term “Smn” or “Smn protein,” unless otherwise specified herein, refers to a human Smn protein that contains the amino acid residues encoded by exons 1 through 7 of the SMN1 gene and/or SMN2 gene. In a specific embodiment, the Smn protein is stable and functional in vitro and/or in vivo as assessed by methods known to one of skill in the art. In another specific embodiment, the Smn protein is the full-length protein encoded by the human SMN1 gene and/or SMN2 gene. In another specific embodiment, the Smn protein has the amino acid sequence found at GenBank Accession No. NP_000335, AAC50473.1, AAA66242.1, or NP_059107.
[00672] As used herein, the term “enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene,” and analogous terms, unless otherwise specified herein, refers to the inclusion of the complete, intact, non-truncated sequence of exon 7 of SMN2 into the mature mRNA that is transcribed from the SMN2 gene (i.e., resulting in the production of full-length SMN2 mRNA) in vitro and/or in vivo, as assessed by methods known to one of skill in the art, such that increased levels of Smn protein are produced from the SMN2 gene in vitro and/or in vivo, as assessed by methods known to one of skill in the art; or, that increased
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2017204248 22 Jun 2017 expression of stable and functional Smn protein is produced from the SMN2 gene in vitro and/or in vivo, as assessed by methods known to one of skill in the art; or, that expression of the fusion protein encoded by the minigene is increased in vitro and/or in vivo, as assessed by methods known to one of skill in the art; or, that expression of Smn protein produced from the SMN2 gene in a subject (e.g., an animal model for SMA or a human subject or an SMA patient) in need thereof is increased.
[00673] As used herein, the term “enhances the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene,” and analogous terms, unless otherwise specified herein, refers to the inclusion of the complete, intact, non-truncated sequence of exon 7 of SMN1 into the mature mRNA that is transcribed from the SMN1 gene (i.e., resulting in the production of full-length SMN1 mRNA) in vitro and/or in vivo, as assessed by methods known to one of skill in the art, such that increased levels of Smn protein are produced from the SMN1 gene in vitro and/or in vivo, as assessed by methods known to one of skill in the art; or, that increased expression of stable and functional Smn protein is produced from the SMN1 gene in vitro and/or in vivo, as assessed by methods known to one of skill in the art: or, that expression of the fusion protein encoded by the minigene is increased in vitro and/or in vivo, as assessed by methods known to one of skill in the art; or, that expression of Smn protein produced from the SMN1 gene in a subject (e.g., an animal model for SMA or a human subject) in need thereof is increased.
[00674] As used herein, the term “substantial change” in the context of the amount of mRNA means that the amount of mRNA does not change by a statistically significant amount, e.g., a p value less than a value selected from 0.1, 0.05, 0.01, 0.005, 0.001, 0.0005, 0.0001, 0.00005 or 0.00001.
[00675] As used herein, the terms “subject” and “patient” are used interchangeably to refer to an animal or any living organism having sensation and the power of voluntary movement, and which requires for its existence oxygen and organic food. Nonlimiting examples include members of the human, equine, porcine, bovine, rattus, murine, canine and feline species. In some embodiments, the subject is a mammal or a warm-blooded vertebrate animal. In certain embodiments, the subject is a non-human animal. In specific embodiments, the subject is a human. In one specific embodiment, the subject is a human SMA patient.
[00676] As used herein, the term “elderly human” refers to a human 65 years old or older.
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2017204248 22 Jun 2017 [00677] As used herein, the term human adult refers to a human that is 18 years or older. [00678] As used herein, the term human child refers to a human that is 1 year to 18 years old.
[00679] As used herein, the term human infant refers to a newborn to 1 year old year human.
[00680] As used herein, the term human toddler refers to a human that is 1 year to 3 years old.
COMPOUND FORMS [00681] As used herein, the terms “a compound of Formula (la),” “a compound of Formula (Ial),” “a compound of Formula (Ia2),” “a compound of Formula (Ia3),” “a compound of Formula (Ia4),” “a compound of Formula (II),” “a compound of Formula (Ila),” “a compound of Formula (Hal),” “a compound of Formula (IIa2),” “a compound of Formula (IIa3),” “a compound of Formula (IIa4),” “a compound of Formula (III),” “a compound of Formula (Illa),” “a compound of Formula (Illa 1),” “a compound of Formula (IIIa2),” “a compound of Formula (IIIa3),” “a compound of Formula (IIIa4),” “a compound of Formula (IV),” “a compound of Formula (IVa),” “a compound of Formula (IVal),” “a compound of Formula (IVa2),” “a compound of Formula (V),” “a compound of Formula (Va),” “a compound of Formula (Vai),” “a compound of Formula (Va2),” “a compound of Formula (VI),” “a compound of Formula (Via),” “a compound of Formula (Vial),” “a compound of Formula (VIa2),” “a compound of Formula (VIa3),” “a compound of Formula (VIa4),” “a compound of Formula (VII),” “a compound ofFormula (Vila),” “a compound ofFormula (Vllal),” “a compound of Formula (Vlla2),” “a compound ofFormula (Vlll),” “a compound ofFormula (Villa),” “a compound of Formula (VUIal),” “a compound ofFormula (VIIIa2),” “a compound ofFormula (IX),” “a compound ofFormula (IXa),” “a compound ofFormula (IXal),” “a compound ofFormula (IXa2),” “a compound ofFormula (lXa3),” “a compound ofFormula (IXa4),” “a compound of Formula (X),” “a compound ofFormula (Xa),” “a compound ofFormula (Xal),” “a compound ofFormula (Xa2),” “a compound ofFormula (XI),” “a compound ofFormula (Xia),” “a compound ofFormula (Xlal),” “a compound ofFormula (XIa2),” “a compound ofFormula (XII),” “a compound ofFormula (Xlla),” “a compound ofFormula (Xllal),” “a compound of Formula (XIIa2),” “a compound ofFormula (XIIa3),” “a compound ofFormula (XIIa4),” “a
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2017204248 22 Jun 2017 compound of Formula (XIII),” “a compound of Formula (XHIa),” “a compound of Formula (Xlllal),” “a compound of Formula (Xllla2),” “a compound of Formula (XIV),” “a compound of Formula (XlVa),” “a compound of Formula (XlVal),” and “a compound of Formula (XIVa2),” each refer to subgenera of the compound of Formula (I) or a form thereof.
[00682] Rather than repeat embodiments for the various subgenera of the compound of Formula (I), in certain embodiments, the term “a compound of Formula (I) or a form thereof’ is used to inclusively to refer to a compound of Formula (la) or a form thereof, a compound of Formula (Ial) or a form thereof, a compound of Formula (Ia2) or a form thereof, a compound of Formula (Ia3) or a form thereof, a compound of Formula (Ia4) or a form thereof, a compound of Formula (II) or a form thereof, a compound of Formula (Ila) or a form thereof, a compound of Formula (Hal) or a form thereof, a compound of Formula (IIa2) or a form thereof, a compound of Formula (IIa3) or a form thereof, a compound of Formula (IIa4) or a form thereof, a compound of Formula (III) or a form thereof, a compound of Formula (Illa) or a form thereof, a compound of Formula (Illal) or a form thereof, a compound of Formula (IIIa2) or a form thereof, a compound of Formula (IIIa3) or a form thereof, a compound of Formula (IIIa4) or a form thereof, a compound of Formula (IV) or a form thereof, a compound of Formula (IVa) or a form thereof, a compound of Formula (IVal) or a form thereof, a compound of Formula (IVa2) or a form thereof, a compound of Formula (V) or a form thereof, a compound of Formula (Va) or a form thereof, a compound of Formula (Vai) or a form thereof, a compound of Formula (Va2) or a form thereof, a compound of Formula (VI) or a form thereof, a compound of Formula (Via) or a form thereof, a compound of Formula (Vial) or a form thereof, a compound of Formula (VIa2) or a form thereof, a compound of Formula (VIa3) or a form thereof, a compound of Formula (VIa4) or a form thereof, a compound of Formula (VII) or a form thereof, a compound of Formula (Vila) or a form thereof, a compound of Formula (Vllal) or a form thereof, a compound of Formula (VIIa2) or a form thereof, a compound of Formula (VIII) or a form thereof, a compound of Formula (Villa) or a form thereof, a compound of Formula (VUIal) or a form thereof, a compound of Formula (VIIIa2) or a form thereof, a compound of Formula (IX) or a form thereof, a compound of Formula (IXa) or a form thereof, a compound of Formula (IXal) or a form thereof, a compound of Formula (IXa2) or a form thereof, a compound of Formula (IXa3) or a form thereof, a compound of Formula (IXa4) or a form thereof, a compound of Formula (X) or a form thereof, a compound of Formula (Xa) or a form thereof, a compound of
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2017204248 22 Jun 2017
Formula (Xal) or a form thereof, a compound of Formula (Xa2) or a form thereof, a compound of Formula (XI) or a form thereof, a compound of Formula (Xia) or a form thereof, a compound of Formula (XIal) or a form thereof, a compound of Formula (XIa2) or a form thereof, a compound of Formula (XII) or a form thereof, a compound of Formula (Xlla) or a form thereof, a compound of Formula (Xllal) or a form thereof, a compound of Formula (XIIa2) or a form thereof, a compound of Formula (XIIa3) or a form thereof, a compound of Formula (XIIa4) or a form thereof, a compound of Formula (XIII) or a form thereof, a compound of Formula (XHIa) or a form thereof, a compound of Formula (XHIal) or a form thereof, a compound of Formula (XIIIa2) or a form thereof, a compound of Formula (XIV) or a form thereof, a compound of Formula (XlVa) or a form thereof, a compound of Formula (XlVal) or a form thereof or a compound of Formula (XIVa2) or a form thereof, either separately or together.
[00683] Thus, embodiments and references to “a compound of Formula (1)” are intended to be inclusive of compounds of Formula (la), Formula (Ial), Formula (Ia2), Formula (Ia3), Formula (Ia4), Formula (II), Formula (Ila), Formula (Hal), Formula (IIa2), Formula (IIa3), Formula (IIa4), Formula (III), Formula (Illa), Formula (Illal), Formula (IIIa2), Formula (IIIa3), Formula (IIIa4), Formula (IV), Formula (IVa), Formula (IVal), Formula (IVa2), Formula (V), Formula (Va), Formula (Vai), Formula (Va2), Formula (VI), Formula (Via), Formula (Vial), Formula (VIa2), Formula (VIa3), Formula (VIa4), Formula (VII), Formula (Vila), Formula (Vllal), Formula (VIIa2), Formula (VIII), Formula (Villa), Formula (VUIal), Formula (VIIIa2), Formula (IX), Formula (IXa), Formula (IXal), Formula (IXa2), Formula (IXa3), Formula (IXa4), Formula (X), Formula (Xa), Formula (Xal), Formula (Xa2), Formula (XI), Formula (Xia), Formula (XIal), Formula (XIa2), Formula (XII), Formula (Xlla), Formula (Xllal), Formula (XIIa2), Formula (XIIa3), Formula (XIIa4), Formula (XIII), Formula (XHIa), Formula (XHIal), Formula (XIIIa2), Formula (XIV), Formula (XlVa), Formula (XlVal) and Formula (XIVa2). [00684] As used herein, the term “form” means a compound of Formula (I) selected from a free acid, free base, salt, isotopologuc, stereoisomer, racemate, enantiomer, diastereomer, or tautomer thereof.
[00685] In certain embodiments described herein, the form of the compound of Formula (I) is a selected from a salt, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
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2017204248 22 Jun 2017 [00686] In certain embodiments described herein, the form of the compound of Formula (I) is a selected from a free acid, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
[00687] In certain embodiments described herein, the form of the compound of Formula (I) is a selected from a free base, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
[00688] In certain embodiments described herein, the form of the compound of Formula (I) is a free acid, free base or salt thereof.
[00689] In certain embodiments described herein, the form of the compound of Formula (I) is an isotopologue thereof.
[00690] In certain embodiments described herein, the form of the compound of Formula (I) is a stereoisomer, racemate, enantiomer or diastereomer thereof.
[00691] In certain embodiments described herein, the form of the compound of Formula (I) is a tautomer thereof.
[00692] In certain embodiments described herein, the form of the compound of Formula (I) is a pharmaceutically acceptable form.
[00693] In certain embodiments described herein, the compound of Formula (I) or a form thereof is isolated for use.
[00694] As used herein, the term “isolated” means the physical state of a compound of Formula (I) or a form thereof after being isolated and/or purified from a synthetic process (e.g., from a reaction mixture) or natural source or combination thereof according to an isolation or purification process or processes described herein or which are well known to the skilled artisan (e.g., chromatography, recrystallization and the like) in sufficient purity to be characterizable by standard analytical techniques described herein or well known to the skilled artisan.
[00695] As used herein, the term “protected” means that a functional group on a compound of Formula (I) is in a form modified to preclude undcsircd side reactions at the protected site when the compound is subjected to a reaction. Suitable protecting groups will be recognized by those with ordinary skill in the art as well as by reference to standard textbooks such as, for example, T. W. Greene et al, Protective Groups in Organic Synthesis (1991), Wiley, New York.
[00696] Prodrugs of a compound of Formula (I) or a form thereof are also contemplated herein.
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2017204248 22 Jun 2017 [00697] As used herein, the term “prodrug” means that a functional group on a compound of Formula (!) is in a form (e.g., acting as an active or inactive drug precursor) that is transformed in vivo to yield an active or more active compound of Formula (I) or a form thereof. The transformation may occur by various mechanisms (e.g., by metabolic and/or non-metabolic chemical processes), such as, for example, by hydrolysis and/or metabolism in blood, liver and/or other organs and tissues. A discussion of the use of prodrugs is provided by V.J.. Stella, et. al., “Biotechnology: Pharmaceutical Aspects, Prodrugs: Challenges and Rewards,”American Association of Pharmaceutical Scientists and Springer Press, 2007.
[00698] In one example, when a compound of Formula (I) or a form thereof contains a carboxylic acid functional group, a prodrug can comprise an ester formed by the replacement of the hydrogen atom of the acid group with a functional group such as alkyl and the like. In another example, when a compound of Formula (I) or a form thereof contains an alcohol functional group, a prodrug can be formed by the replacement of the hydrogen atom of the alcohol group with a functional group such as alkyl or substituted carbonyl and the like. In another example, when a compound of Formula (I) or a form thereof contains an amine functional group, a prodrug can be formed by the replacement of one or more amine hydrogen atoms with a functional group such as alkyl or substituted carbonyl. In another example, when a compound of Formula (I) or a form thereof contains a hydrogen substituent, a prodrug can be formed by the replacement of one or more hydrogen atoms with an alkyl substituent.
[00699] Pharmaceutically acceptable prodrugs of compounds of Formula (I) or a form thereof include those compounds substituted with one or more of the following groups: carboxylic acid esters, sulfonate esters, amino acid esters phosphonate esters, mono-, di- or triphosphate esters or alkyl substituents where appropriate. As described herein, it is understood by a person of ordinary skill in the art that one or more of such substituents may be used to provide a compound of Formula (T) or a form thereof for use as a prodrug.
[00700] The compounds of Formula (I) can form salts which arc intended to be included within the scope of this description. Reference to a compound of Formula (I) herein is understood to include reference to salts thereof, unless otherwise indicated. The term salt(s), as employed herein, denotes acidic salts formed with inorganic and/or organic acids, as well as basic salts formed with inorganic and/or organic bases. In addition, when a compound of Formula (I) contains both a basic moiety, such as, but not limited to a pyridine or imidazole, and
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2017204248 22 Jun 2017 an acidic moiety, such as, but not limited to a carboxylic acid, zwitterions (inner salts) may be formed and are included within the term salt(s) as used herein.
[00701] The term pharmaceutically acceptable salt(s), as used herein, means those salts of compounds described herein that are safe and effective (i.e., non-toxic, physiologically acceptable) for use in mammals and that possess biological activity, although other salts are also useful. Salts of the compounds of Formula (I) may be formed, for example, by reacting a compound of Formula (I) with an amount of acid or base, such as an equivalent or stoichiometric amount, in a medium such as one in which the salt precipitates or in an aqueous medium followed by lyophilization.
[00702] Pharmaceutically acceptable salts include one or more salts of acidic or basic groups present in compounds described herein. Embodiments of acid addition salts include, but are not limited to, an acetate, diacetate, acid phosphate, ascorbate, benzoate, benzenesulfonate, bisulfate, bitartrate, borate, butyrate, chloride, citrate, camphorate, camphorsulfonate, ethanesulfonate, formate, fumarate, gentisinate, gluconate, glucaronate, glutamate, hydrobromide, hydrochloride, dihydrochloride, trihydrochloride, hydro iodide, isonicotinate, lactate, maleate, methanesulfonate, naphthalenesulfonate, nitrate, oxalate, pamoate, pantothenate, phosphate, propionate, saccharate, salicylate, succinate, sulfate, tartrate, thiocyanate, toluenesulfonate (also known as tosylate), trifluoroacetate, trifluoroacetic acid salt and the like. One or more embodiments of acid addition salts include chloride, hydrobromide, hydrochloride, dihydrochloride, trihydrochloride, acetate, diacetate, trifluoroacetate, trifluoroacetic acid salt and the like. More particular embodiments include a chloride, hydrobromide, hydrochloride, dihydrochloride, trifluoroacetate, trifluoroacetic acid salt and the like.
[00703] Additionally, acids which are generally considered suitable for the formation of pharmaceutically useful salts from basic pharmaceutical compounds are discussed, for example, by P. Stahl et al, Camille G. (eds.) Handbook of Pharmaceutical Salts. Properties, Selection and Use. (2002) Zurich: Wilcy-VCH; S. Berge et al, Journal of Pharmaceutical Sciences (1977) 66(1) 1-19; P. Gould, International J. of Pharmaceutics (1986) 33, 201-217; Anderson et al, The Practice of Medicinal Chemistry (1996), Academic Press, New York; and in The Orange Book (see, website for Food & Drug Administration, Washington, D.C.). These disclosures are incorporated herein by reference thereto.
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2017204248 22 Jun 2017 [00704] Suitable basic salts include, but are not limited to, aluminum, ammonium, calcium, lithium, magnesium, potassium, sodium, zinc, and diethanolamine salts. Certain compounds described herein can also form pharmaceutically acceptable salts with organic bases (for example, organic amines) such as, but not limited to, dicyclohexylamines, terf-butyl amines and the like, and with various amino acids such as, but not limited to, arginine, lysine and the like. Basic nitrogen-containing groups may be quarternized with agents such as lower alkyl halides (e.g., methyl, ethyl, and butyl chlorides, bromides and iodides), dialkyl sulfates (e.g., dimethyl, diethyl, and dibutyl sulfates), long chain halides (e.g., decyl, lauryl, and stearyl chlorides, bromides and iodides), aralkyl halides (e.g., benzyl and phenethyl bromides), and others.
[00705] All such acid salts and base salts are intended to be pharmaceutically acceptable salts within the scope of the description herein and all such acid and base salts are considered equivalent to the free forms of the corresponding compounds for the purposes described herein. [00706] Compounds of Formula I and forms thereof may further exist in a tautomeric form. All such tautomeric forms are contemplated herein as part of the present description.
[00707] The compounds of Formula (I) may contain asymmetric or chiral centers, and, therefore, may exist in different stereoisomeric forms. The present description is intended to include all stereoisomeric forms of the compounds of Formula (I) as well as mixtures thereof, including racemic mixtures.
[00708] The compounds of Formula (I) described herein may include one or more chiral centers, and as such may exist as racemic mixtures (R/S) or as substantially pure enantiomers and diastereomers. The compounds may also exist as substantially pure (7?) or (.S') enantiomers (when one chiral center is present). In one embodiment, the compounds of Formula (I) described herein are (5) isomers and may exist as enantiomerically pure compositions substantially comprising only the (5) isomer. In another embodiment, the compounds of Formula (I) described herein are (7?) isomers and may exist as enantiomerically pure compositions substantially comprising only the (R) isomer. As one of skill in the art will recognize, when more than one chiral center is present, the compounds of Formula (I) described herein may also include portions described as an (R,R), (R,S), (S,R) or (.S',.S') isomer, as defined by IUPAC Nomenclature Recommendations.
[00709] As used herein, the term “substantially pure” refers to compounds consisting substantially of a single isomer in an amount greater than or equal to 90%, in an amount greater
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2017204248 22 Jun 2017 than or equal to 92%, in an amount greater than or equal to 95%, in an amount greater than or equal to 98%, in an amount greater than or equal to 99%, or in an amount equal to 100% of the single isomer.
[00710] In one aspect, a compound of Formula (I) is a substantially pure (5) enantiomer present in an amount greater than or equal to 90%, in an amount greater than or equal to 92%, in an amount greater than or equal to 95%, in an amount greater than or equal to 98%, in an amount greater than or equal to 99%, or in an amount equal to 100%.
[00711] In one aspect, a compound of Formula (I) is a substantially pure (5) enantiomer present in an amount greater than or equal to 90%, in an amount greater than or equal to 92%, in an amount greater than or equal to 95%, in an amount greater than or equal to 98%, in an amount greater than or equal to 99%, or in an amount equal to 100%.
[00712] As used herein, a “racemate” is any mixture of isometric forms that are not “enantiomerically pure”, including mixtures such as, without limitation, in a ratio of about 50/50, about 60/40, about 70/30, about 80/20, about 85/15 or about 90/10.
[00713] In addition, the present description embraces all geometric and positional isomers. For example, if a compound of Formula (I) incorporates a double bond or a fused ring, both the cis- and trans-forms, as well as mixtures, are embraced within the scope of the description herein.
[00714] Diastereomeric mixtures can be separated into their individual diastereomers on the basis of their physical chemical differences by methods well known to those skilled in the art, such as, for example, by chromatography and/or fractional crystallization. Enantiomers can be separated by use of chiral HPLC column or other chromatographic methods known to those skilled in the art.
[00715] Enantiomers can also be separated by converting the enantiomeric mixture into a diastereomeric mixture by reaction with an appropriate optically active compound (e.g., chiral auxiliary such as a chiral alcohol or Mosher’s acid chloride), separating the diastereomers and converting (e.g., hydrolyzing) the individual diastereomers to the corresponding pure enantiomers. Also, some of the compounds of Formula (I) may be atropisomers (e.g., substituted biaryls) and are considered part of this description.
[00716] All stereoisomer forms (for example, geometric isomers, optical isomers, positional isomers and the like) of the present compounds (including salts, solvates, esters and prodrugs and
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2017204248 22 Jun 2017 transformed prodrugs thereof) which may exist due to asymmetric carbons on various substituents, including enantiomeric forms (which may exist even in the absence of asymmetric carbons), rotameric forms, atropisomers, diastereomeric forms and regioisomeric forms are contemplated within the scope of the description herein. For example, if a compound of Formula (I) incorporates a double bond or a fused ring, both the cis- and trans-forms, as well as mixtures thereof, are embraced within the scope of the description herein. Also, for example, all keto-enol and imine-enamine tautomeric forms of the compounds are included in the description herein. Individual stereoisomers ofthe compounds of Formula (I) described herein may, for example, be substantially free of other isomers, or may be present in a racemic mixture, as described supra. [00717] The use of the terms salt, “prodrug” and “transformed prodrug” are intended to equally apply to the salts, prodrugs and transformed prodrugs of all contemplated isotopologues, stereoisomers, racemates or tautomers of the instant compounds.
[00718] The term isotopologue refers to isotopically-enriched compounds which are identical to those recited herein, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into compounds described herein include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, fluorine and chlorine, such as Η2, H3, C13, C14, N15, O1S, Ο17, P31, P32, S35, F1S, Cl35 and Cl36, respectively, each of which is also within the scope of this description.
[00719] Certain isotopically-enriched compounds described herein (e.g., those labeled with H3 and C14) are useful in compound and/or substrate tissue distribution assays. Tritiated (i.e., H3) and carbon-14 (i.e., C14) isotopes are particularly preferred for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., deuterium enriched) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements) and hence may be preferred in some circumstances. Isotopically-enriched compounds of Formula (I) can generally be prepared using procedures known to persons of ordinary skill in the art by substituting an appropriate isotopically-enriched reagent for a non-isotopically-enriched reagent.
[00720] When the compounds are enriched with deuterium, the deuterium-to-hydrogen ratio on the deuterated atoms of the molecule substantially exceeds the naturally occurring deuteriumto-hydrogen ratio.
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2017204248 22 Jun 2017 [00721] An embodiment described herein may include an isotopologue form of the compound of Formula (1), wherein the isotopologue is substituted on one or more atom members of the compound of Formula (I) with one or more deuterium atoms in place of one or more hydrogen atoms.
[00722] An embodiment described herein may include a compound of Formula (I) and forms thereof, wherein a carbon atom may have from 1 to 3 hydrogen atoms optionally replaced with deuterium.
[00723] One or more compounds described herein may exist in unsolvated as well as solvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like, and the description herein is intended to embrace both solvated and unsolvated forms.
[00724] As used herein, the term “solvate” means a physical association of a compound described herein with one or more solvent molecules. This physical association involves varying degrees of ionic and covalent bonding, including hydrogen bonding. In certain instances the solvate will be capable of isolation, for example when one or more solvent molecules are incorporated in the crystal lattice ofthe crystalline solid. As used herein, “solvate” encompasses both solution-phase and isolatable solvates. Non-limiting examples of suitable solvates include ethanolates, methanolates, and the like.
[00725] One or more compounds described herein may optionally be converted to a solvate. Preparation of solvates is generally known. A typical, non-limiting process involves dissolving a compound in a desired amount of the desired solvent (organic or water or mixtures thereof) at a higher than ambient temperature, and cooling the solution at a rate sufficient to form crystals which are then isolated by standard methods. Analytical techniques such as, for example infrared spectroscopy, show the presence of the solvent (or water) in the crystals as a solvate (or hydrate).
[00726] As used herein, the term “hydrate” means a solvate wherein the solvent molecule is water.
[00727] Polymorphic crystalline and amorphous forms of the compounds of Formula (I), and ofthe salts, solvates, esters and prodrugs ofthe compounds of Formula (I), are further intended to be included in the scope of the compounds described herein.
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COMPOUND USES [00728] Compounds of Formula (I) or a form thereof that enhance inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene are described herein. Such compounds of Formula (I) or a form thereof have been shown to enhance the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene using the assays described herein (see Biological example section, infra). Accordingly, compounds of Formula (1) or a form thereof have utility as enhancers for the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
[00729] Compounds of Formula (I) or a form thereof for enhancing inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene are described herein. Such compounds of Formula (I) or a form thereof may enhance inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene using, e.g., an SMN1 minigene assay. Accordingly, compounds of Formula (I) or a form thereof may have utility as enhancers for the inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene.
[00730] In one aspect, provided herein are methods for modulating the inclusion of exon 7 of SMN2 into RNA transcribed from the SMN2 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein are methods for modulating the inclusion of exon 7 of SMN2 into RNA transcribed from the SMN2 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof that modulates the expression of an SMN2 minigene described herein or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833. In another embodiment, the minigene is the minigene described in Biological Example 1, infra. The human cell can be contacted with a compound of Formula (I) or a form thereof in vitro and/or in vivo, e.g., in a non-human animal or in a human. In a specific embodiment, the human cell is from or in a human. In another specific embodiment, the human cell is from or in a human SMA patient, in another specific embodiment, the human cell is from or in a human SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the SMN1 gene on both chromosomes, resulting in a loss of SMN1 gene function. In another embodiment, the human cell is a human cell from a human
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SMA patient. In certain embodiments, the human cell is from a cell line, such as GM03813, GM00232, GM09677, and/or GM23240 (available from Coriell Institute). In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00731] In a specific embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof. In another embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof that enhances the expression of an SMN2 minigene described herein or in International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833. In another embodiment, the minigene is the minigene described in Biological Example 1, infra. The human cell can be contacted with a compound of Formula (I) or a form thereof in vitro and/or in vivo, e.g., in a non-human animal or in a human. In a specific embodiment, the human cell is from or in a human. In another specific embodiment, the human cell is from or in a human SMA patient. In another specific embodiment, the human cell is from or in a human SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the SMN1 gene on both chromosomes, resulting in a loss of SMN1 gene function. In another embodiment, the human cell is a human cell from a human SMA patient. In certain embodiments, the human cell is from a cell line, such as GM03813, GM00232, GM09677, and/or GM23240 (available from Coriell Institute). In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00732] In another aspect, provided herein are methods for enhancing the inclusion of exon 7 of SMN 1 into RNA transcribed from the SMN1 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein arc methods for enhancing the inclusion of exon 7 of SMN 1 into RNA transcribed from the SMN1 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof. In another specific embodiment, provided herein are methods for enhancing the inclusion of exon 7 of SMN 1 into RNA transcribed from the SMN1 gene, comprising contacting a human cell with a compound of Formula (I) or a form thereof that modulates the expression of an SMN1 minigene
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2017204248 22 Jun 2017 described in International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833. The human cell can be contacted with a compound of Formula (I) or a form thereof in vitro and/or in vivo, e.g., in a non-human animal or in a human. In a specific embodiment, the human cell is from or in a human. In another specific embodiment, the human cell is from or in a human SMA patient. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00733] In specific embodiments, provided herein are methods for enhancing the inclusion of exon 7 of SMN 1 and SMN2 into RNA transcribed from the SMN1 and SMN2 genes, comprising contacting a human cell with a compound of Formula (I) or a form thereof. The human cell can be contacted with a compound of Formula (I) or a form thereof in vitro and/or in vivo, e.g., in a non-human animal or in a human. In a specific embodiment, the human cell is from or in a human. In another specific embodiment, the human cell is from or in a human SMA patient. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00734] In another aspect, provided herein is a method for modulating the inclusion of exon 7 of SMN2 into RNA transcribed from the SMN2 gene, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for modulating the inclusion of exon 7 of SMN2 into RNA transcribed from the SMN2 gene, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof that modulates the expression of an SMN2 minigene described herein or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833. In another embodiment, the minigene is the minigene described in Biological Example 1, infra. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00735] In a specific embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising administering
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2017204248 22 Jun 2017 to a non-human animal model for SMA a compound of Formula (I) or a form thereof. In another specific embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising administering to a nonhuman animal model for SMA a compound of Formula (I) or a form thereof that enhances the expression of an SMN2 minigene described herein or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833. In another embodiment, the minigene is the minigene described in Biological Example 1, infra. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00736] In another aspect, provided herein is a method for enhancing the inclusion of exon 7 of SMN 1 into RNA transcribed from the SMN1 gene, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN1 into RNA transcribed from the SMN1 gene, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof that modulates the expression of an SMN 1 minigene described herein or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In one embodiment, the minigene is a minigene described in the Examples of International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00737] In specific embodiments, provided herein is a method for enhancing the inclusion of exon 7 of SMN1 and SMN2 into RNA transcribed from the SMN1 and SMN2 genes, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00738] In another aspect, provided herein is a method for increasing the amount of Smn protein, comprising contacting a human cell with a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for increasing the amount of Smn protein,
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2017204248 22 Jun 2017 comprising contacting a human cell with a compound ofFormula (I) that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. In another specific embodiment, provided herein is a method for increasing the amount of Smn protein, comprising contacting a human cell with a compound ofFormula (I) that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene. The human cell can be contacted with a compound ofFormula (I) or a form thereof in vitro and/or in vivo, e.g., in a non-human animal or in a human. In a specific embodiment, the human cell is from or in a human. In another specific embodiment, the human cell is from or in a human SMA patient. In another specific embodiment, the human cell is from or in a human SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the SMN 1 gene on both chromosomes, resulting in a loss of SMN1 gene function. In another embodiment, the human cell is a human cell from a human SMA patient. In certain embodiments, the human cell is from a cell line, such as GM03813, GM00232, GM09677, and/or GM23240 (available from Coriell Institute). In one embodiment, the compound is a compound ofFormula (I) or a form thereof. [00739] In another aspect, provided herein is a method for increasing the amount of Smn protein, comprising administering to a non-human animal model for SMA a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for increasing the amount of Smn protein, comprising administering to a non-human animal model for SMA a compound ofFormula (I) that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in, e.g., a cell-based or cell-free assay, such as described in the Biological Examples, infra. In another specific embodiment, provided herein is a method for increasing the amount of Smn protein, comprising administering to a non-human animal model for SMA a compound ofFormula (I) that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene in, e.g., a cellbased or cell-free assay.
[00740] In one embodiment, the compound ofFormula (I) enhances the expression of a minigene described herein or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In a specific embodiment, the compound ofFormula (I) enhances the expression of a minigene described in the Examples of International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833. In another specific embodiment, the
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2017204248 22 Jun 2017 compound of Formula (I) enhances the expression of a minigene described in Biological Example 1, infra. In one embodiment, the compound is a compound of Formula (1) or a form thereof [00741] In one embodiment, provided herein is the use of a compound of Formula (I) or a form thereof for the preparation of a medicament that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. In another embodiment, provided herein is the use of a compound of Formula (I) or a form thereof for the preparation of a medicament that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, thereby increasing expression of Smn protein in a human subject in need thereof. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in an assay described herein (see, e.g., the Biological Examples, infra). In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00742] In one embodiment, provided herein is the use of a compound of Formula (I) or a form thereof for the preparation of a medicament that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene. In another embodiment, provided herein is the use of a compound of Formula (I) or a form thereof for the preparation of a medicament that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene, thereby increasing expression of Smn protein in a human subject in need thereof. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00743] In another aspect, provided herein are methods for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in a human subject in need thereof, comprising administering to the human subject an effective amount of a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in a human subject in need thereof, comprising administering to the human subject an effective amount a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra). In specific embodiments, the effective amount of the compound of Formula (I) or a form thereof is administered to the human subject in a
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2017204248 22 Jun 2017 pharmaceutical composition comprising a pharmaceutically acceptable carrier, excipient or diluent. In a particular embodiment, the compound of Formula (1) or a form thereof enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in an assay described herein (see, e.g., the Biological Examples, infra). In a specific embodiment, the human subject is a human SMA patient. In another specific embodiment, the human subject is a human SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the SMN1 gene on both chromosomes, resulting in a loss of SMN1 gene function. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00744] In another aspect, provided herein are methods for enhancing the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN 1 gene in a human subject in need thereof, comprising administering to the human subject an effective amount of a compound of Formula (I) or a form thereof. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN 1 into mRNA that is transcribed from the SMN1 gene in an assay described in International Publication No. W02009/151546 or U.S. Patent Application Publication No. 2011/0086833. In specific embodiments, the effective amount of the compound of Formula (I) or a form thereof is administered to the human subject in a pharmaceutical composition comprising a pharmaceutically acceptable carrier, excipient or diluent. In a specific embodiment, the human subject is a human SMA patient. In one embodiment, the compound is a compound of Formula (I) or a form thereof [00745] In another aspect, provided herein is a method for enhancing the inclusion of exon 7 of SMN 1 and SMN2 into mRNA that is transcribed from the SMN1 and SMN2 genes in a human subject in need thereof, comprising administering to the human subject an effective amount a compound of Formula (I) or a form thereof. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN1 into mRNA that is transcribed from the SMN1 gene in an assay(s) described in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (sec, e.g., the Examples in those publications), each of which is incorporated herein by reference in its entirety. In specific embodiments, the effective amount of the compound of Formula (I) or a form thereof is administered to the human subject in a pharmaceutical composition comprising a pharmaceutically acceptable carrier, excipient or diluent. In a specific embodiment, the human subject is a human SMA patient. In another specific embodiment, the human subject is a human
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SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the SMN 1 gene on both chromosomes, resulting in a loss of SMN 1 gene function. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00746] In another aspect, provided herein are methods for enhancing the expression of Smn protein in a human subject in need thereof, comprising administering to the human subject an effective amount of a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for enhancing the expression of Smn protein in a human subject in need thereof, comprising administering to the human subject an effective amount a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. In another specific embodiment, provided herein is a method for enhancing the expression of Smn protein in a human subject in need thereof, comprising administering to the human subject an effective amount a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene. In specific embodiments, the effective amount ofthe compound of Formula (I) or a form thereof is administered to the human subject in a pharmaceutical composition comprising a pharmaceutically acceptable carrier, excipient or diluent. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene in an assay described herein (see, e.g., the Biological Examples, infra) or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (see, e.g., the Examples in those publications), each of which is incorporated herein by reference in its entirety.
[00747] In a specific embodiment, the human subject is a human SMA patient. In another specific embodiment, the human subject is a human SMA patient, wherein SMA is caused by an inactivating mutation or deletion in the teleomeric copy of the SMN1 gene in both chromosomes, resulting in a loss of SMN1 gene function. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00748] In another embodiment, provided herein is the use of a compound of Formula (I) or a form thereof for the preparation of a medicament that enhances expression of Smn protein in a human subject in need thereof. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the
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SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra). In another embodiment, the compound of Formula (1) or a form thereof enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra) or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (see, e.g., the Examples in those publications), each of which is incorporated herein by reference in its entirety. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00749] In another aspect, provided herein are methods for treating spinal muscular atrophy (SMA), comprising administering to a subject an effective amount of a compound of Formula (I) or a form thereof. In a specific embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a form thereof. In another specific embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject a pharmaceutical composition comprising an effective amount of a compound of Formula (I) or a form thereof, and a pharmaceutically acceptable carrier, excipient or diluent. In one embodiment, the compound is a compound of Formula (I) or a form thereof.
[00750] In another embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject an effective amount of a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene. In a specific embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject a pharmaceutical composition comprising an effective amount of a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, and a pharmaceutically acceptable carrier, excipient or diluent. In another specific embodiment, provided herein is a method for treating SMA in a human subject in need thereof, comprising administering to the subject a pharmaceutical composition comprising an effective amount of a compound of Formula (I) or a form thereof that enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene, and a pharmaceutically acceptable carrier, excipient or diluent. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of
168
2017204248 22 Jun 2017 exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in an assay described herein (see, e.g., the Biological Examples, infra). In another embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN 1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra) or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (see, e.g., the Examples in those publications), each of which is incorporated herein by reference in its entirety. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof. [00751] In another embodiment, provided herein is the use of a compound of Formula (I) or a form thereof in the manufacture of a medicament for treating SMA in a human subject in need thereof. In a particular embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra). In another embodiment, the compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene as determined in an assay described herein (see, e.g., the Biological Examples, infra) or in International Publication No. WO2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (see, e.g., the Examples in those publications), each of which is incorporated herein by reference in its entirety. In a specific embodiment, the compound is a compound of Formula (I) or a form thereof.
[00752] In an embodiment of a use or method provided herein, compounds of Formula (I) or a form thereof are used in combination with one or more additional agents. A compound)s) of Formula (I) or a form thereof can be administered to a subject or contacted with a cell prior to, concurrently with, or subsequent to administering to the subject or contacting the cell with an additional agent(s). A compound)s) of Formula (I) or a form thereof and an additional agent(s) can be administered to a subject or contacted with a cell in single composition or different compositions. In a specific embodiments, a compound)s) of Formula (I) or a form thereof is used in combination with gene replacement of SMN1 (using, e.g., viral delivery vectors). In another specific embodiments, a compound)s) of Formula (I) or a form thereof are used in combination with cell replacement using differentiated SMN1 + + and/or SMN2+/+ stem cells. In another specific embodiments, a compound)s) of Formula (I) or a form thereof are used in
169
2017204248 22 Jun 2017 combination with cell replacement using differentiated SMN1 + + stem cells. In another specific embodiments, a compound(s) of Formula (I) or a form thereof are used in combination with cell replacement using differentiated SMN2+/+ stem cells. In another specific embodiment, a compound(s) of Formula (I) or a form thereof are used in combination with aclarubicin. In another specific embodiment, a compound(s) of Formula (I) or a form thereof are used in combination with a transcription activator such as a histone deacetylase (“IIDAC”) inhibitor (e.g., butyrates, valproic acid, and hydroxyurea), and mRNA stabilizers (e.g., mRNA decapping inhibitor RG3039 from Repligen).
[00753] In one embodiment, provided herein is the use of compounds of Formula (I) or a form thereof in combination with supportive therapy, including respiratory, nutritional or rehabilitation care.
[00754] In certain embodiments, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) has a therapeutic effect and/or beneficial effect. In a specific embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in one, two or more of the following effects: (i) reduces or ameliorates the severity of SMA; (ii) delays onset of SMA; (iii) inhibits the progression of SMA; (iv) reduces hospitalization of a subject; (v) reduces hospitalization length for a subject; (vi) increases the survival of a subject; (vii) improves the quality of life of a subject; (viii) reduces the number of symptoms associated with SMA; (ix) reduces or ameliorates the severity of a symptom(s) associated with SMA; (x) reduces the duration of a symptom associated with SMA; (xi) prevents the recurrence of a symptom associated with SMA; (xii) inhibits the development or onset of a symptom of SMA; and/or (xiii) inhibits of the progression of a symptom associated with SMA.
[00755] Symptoms of SMA include muscle weakness, poor muscle tone, weak cry, weak cough, limpness or a tendency to flop, difficulty sucking or swallowing, difficulty breathing, accumulation of secretions in the lungs or throat, clenched fists with sweaty hand, flickering/vibrating of the tongue, head often tilted to one side, even when lying down, legs that tend to be weaker than the arms, legs frequently assuming a frog legs position, feeding difficulties, increased susceptibility to respiratory tract infections, boweFbladder weakness, lower-than-normal weight, inability to sit without support, failure to walk, failure to crawl, and
170
2017204248 22 Jun 2017 hypotonia, areflexia, and multiple congenital contractures (arthrogryposis) associated with loss of anterior horn cells.
[00756] In a specific embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in one,two or more of the following effects: (i) a reduction in the loss of muscle strength; (ii) an increase in muscle strength; (iii) a reduction in muscle atrophy; (iv) a reduction in the loss of motor function; (v) an increase in motor neurons; (vii) a reduction in the loss of motor neurons; (viii) protection of SMN deficient motor neurons from degeneration; (ix) an increase in motor function; (x) an increase in pulmonary function; and/or (xi) a reduction in the loss of pulmonary function.
[00757] In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant or a human toddler to sit up. In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to stand up unaided. In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to walk unaided. In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to run unaided. In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to breathe unaided. Tn another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to turn during sleep unaided. In another embodiment, treating SMA with a compound of Formula (I) or a form thereof (alone or in combination with an additional agent) results in the functional ability or helps retain the functional ability for a human infant, a human toddler, a human child or a human adult to swallow unaided.
171
2017204248 22 Jun 2017 [00758] In certain embodiments, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot, to determine whether a compound of Formula (I) or a form thereof enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from an SMN1 and/or SMN2 gene. In some embodiments, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 8, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RT-qPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification, Northern blot or Southern blot, or a pharmaceutical or assay kit as described infra, to monitor patient responses to a compound of Formula (I) or a form thereof.
[00759] In one embodiment, a compound of Formula (I):
Figure AU2017204248B2_D0447
O (I) [00760] or a form thereof is used as described herein, wherein:
[00761] wi and W5 are independently C-Ra or N;
[00762] W2 is C-Rb or N;
[00763] W3, W4 and W7 are independently C-Ri, C-R2, C-Ra orN;
[00764] w6 is C-Ri, C-R2, C-Rc or N;
[00765] wherein one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00766] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00767] when W3 is C-R2, then we is C-Ri and W4 and W7 are independently C-Ra or N; or, [00768] when W4 is C-Ri, then w? is C-R2 and W3 is C-Ra or N and W6 is C-Rc or N; or, [00769] when W4 is C-R2, then W7 is C-Ri and W3 is C-Ra or N and we is C-Rc or N; and, [00770] wherein any one, two or three of wi, W2, W3, W4, W5, W6 and W7 may optionally be N;
[00771] Ri is Ci-galkyl, amino, Ci-salkyl-amino, (Ci-salkyl)2-amino,
Ci-salkoxy-Ci-salkyl-amino, (Ci-salkoxy-Ci-salkyfh-amino,
172
2017204248 22 Jun 2017 (C i-salkoxy-Ci-salkyl )(Ci.^alkyl)amino, amino-Ci-salkyl, Ci.salkyl-amino-C 1 -salkyl, (Cl-salkylfr-amino-C 1 -salkyl, Ci-salkoxy-Ci-salkyl-amino-Ci-salkyl, (Ci-salkoxy-Ci-salkylfr-amino-Ci-salkyl, (Ci-salkoxy-Ci-salkyl)(Ci-salkyl)amino-Ci-salkyl, amino-Ci-salkyl-amino, (amino-Ci-salkyl)2-amino, (amino-Ci-8alkyl)(Ci-salkyl)amino, Ci-8alkyl-amino-Ci-8alkyl-amino, (Ci-salkyl-amino-Ci-salkylb-amino, (Ci-galkyl-amino-C 1 -salkyl)(C 1 -galkyljamino, (C1 -salky lh-am i no-Ci-salkyl-amino, [(Ci-8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino, amino-Ci-salkoxy,
Ci-salkyl-amino-Ci-salkoxy, (Ci-salkyl-amino-Ci-salkoxy,
Ci-salkoxy-Ci-salkyl-amino-C,-salkoxy, Ci_salkoxy-Ci-salkyl-amino-Ci-salkoxy, (Ci-salkoxy-Ci-salkyl)(Ci-salkyl)amino-Ci-salkoxy, amino-C2-salkenyl, Ci-8alkyl-amino-C2-8alkenyl, (Ci-salkyl)2-amino-C2-salkenyl, amino-C2-salkynyl, Ci-8alkyl-amino-C2-8alkynyl, (Ci-salkyl)2-amino-C2-salkynyl, halo-Ci-8alkyl-amino, (hato-Ci-salkylfr-amino, (halo-Ci-salkyl)(Ci-salkyl)amino, hydroxy-Ci-salkyl, hydroxy-Ci.salkoxy-Ci-salkyl, hydroxy-Ci-salkyl-amino, (hydroxy-Ci-8alkyl)2-amino, (hydroxy-Ci-salkyl)(Ci-salkyl)amino, hydroxy-C i -salkyl-amino-C i-salkyl, (hydroxy-C i -salkyl)2-amino-Ci -salkyl, (hydroxy-C i -salkyl)(C i -8alkyl)amino-C, -salkyl, hydroxy-Ci-8alkyl-amino-Ci-8alkoxy, (hydroxy-Ci-salkylfr-amino-Ci-salkoxy, (hydroxy-C i .salkyl)(C i -8alkyl)amino-C, -salkoxy, hydroxy-Ci-salkyl-amino-Ci-salkyl-amino, (hydroxy-Ci-8alkyl-amino-Ci-8alkyl)2-amino, (hydroxy-C i -salkyl )2-am i no-C i -salkyl-amino, (hydroxy-C i -salkyl-amino-C i -salkyl)(C i _salkyl)amino, (hydroxy-Ci-8alkyl)(Ci-8alkyl)amino-C|-8alkyl-amino, [(hydroxy-C i -salkyl)2-amino-C i -salkyl] (C i -salkyl)amino, [(hydroxy-Ci-8alkyl)(Ci-8alkyl)amino-Ci.8alkyl](Ci-salkyl)amino, heterocyclyl, heterocyclyl-Ci-salkyl, heterocyclyl-Ci.salkoxy, heterocyclyl-amino, (heterocyclyl)(Ci_8alkyl)amino, heterocyclyl-amino-Ci-salkyl, heterocyclyl-Ci-salkyl-amino, (heterocyclyl-Ci-salkylfr-amino, (heterocyclyl-Ci-salkyl)(Ci-salkyl)amino, heterocyclyl-Ci-salkyl-amino-Ci-salkyl,
173
2017204248 22 Jun 2017 (heterocyclyl-C i -salkyl fi-ami no-C i -salkyl, (heterocyclyl-Ci-salkyl)(Ci-8alkyl)amino-Ci-8alkyl, heterocyclyl-oxy, heterocyclyl-carbonyl, heterocyclyl-carbonyl-oxy, C3_i4cycloalkyl, aryl-C].8alkyl-amino, (aryl-Cj.salkylh-amino, (aryl-Ci-8alkyl)(Ci-8alkyl)amino, aryl-Cj-salkyl-amino-Ci-salkyl, (aryl-Ci-salkylF-amino-Ci-salkyl, (aryl-Ci-salkyl)(Ci -salkyl)amino-Ci-salkyl, heteroaryl, heteroaryl-Ci-salkyl, heteroaryl-Ci-salkoxy, heteroaryl-amino, heteroaryl-Ci-salkyl-amino, (heteroaryl-Ci-8alkyl)2-amino, (heteroaryl-C]-8alkyl)(Ci-salkyl)amino, heteroaryl-Ci-salkyl-amino-Ci-salkyl, (heteroaryl-Cj.salkylfi-amino-Cj.salkyl or (heteroaryl-C i _8alkyl)(C i _8alkyl)amino-C, -salkyl;
[00772] wherein, each instance of heterocyclyl, C3-i4Cycloalkyl, aryl and heteroaryl is optionally substituted with one, two or three R3 substituents and optionally, with one additional R4 substituent; or, [00773] wherein, each instance of heterocyclyl, C3-i4Cycloalkyl, aryl and heteroaryl is optionally substituted with one, two, three or four R3 substituents;
[00774] R2 is aryl, aryl-amino, aryl-amino-carbonyl, heterocyclyl, heteroaryl or heteroaryl-amino;
[00775] wherein, each instance of aryl, heterocyclyl and heteroaryl is optionally substituted with one, two or three Ri substituents and optionally, with one additional R7 substituent;
[00776] Ra is, in each instance, independently selected from hydrogen, halogen or Ci-salkyl; [00777] Rb is hydrogen, halogen, Ci-salkyl or Ci-salkoxy;
[00778] R3 is, in each instance, independently selected from cyano, halogen, hydroxy, oxo, Ci-salkyl, halo-Ci-salkyl, Ci-salkyl-carbonyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-salkoxy-Ci-salkyl, Ci-salkoxy-carbonyl, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino, amino-Ci-salkyl, Ci-salkyl-amino-Ci-salkyl, (C1 _8alkyl)2-amino-C 1 -salkyl, amino-C 1 .salkyl-amino, Ci-galkyl-amino-Ci-salkyl-amino, (Cj.salkyl-amino-Cj.salkylfi-amino, (C1 _8alkyl)2-amino-C 1 -salkyl-amino, [(C1 _salkyl)2-amino-C 1 _salkyl]2-amino, (C1 .salkyl-amino-C 1 -salkyl)(C 1 -salkyl)amino, [(Ci-8alkyl)2-amino-Ci-8alkyl](Ci-8alkyl)amino, Ci-salkoxy-Ci-salkyl-amino,
174
2017204248 22 Jun 2017 (Ci_8alkoxy-Ci-8alkyl)2-amino, (Ci-8alkoxy-Ci-8alkyl)(Ci-8alkyl)amino, Ci-8alkyl-carbonyl-amino, Ci-salkoxy-carbonyl-amino, hydroxy-C 1 -salkyl, hydroxy-Ci-8alkoxy-Ci-salkyl, hydroxy-Ci-salkyl-amino, (hydroxy-Ci-salkyl)2-amino or (hydroxy-Ci-salkyl)(Ci-salkyl)amino;
[00779] R4 is Cs-ncycloalkyl, Cs-ucycloalkyl-Ci-salkyl, Ca-ncycloalkyl-amino, aryl-Ci_8alkyl, aryl-Ci-salkoxy-carbonyl, aryl-sulfonyloxy-Ci.salkyl, heterocyclyl or heterocyclyl-C 1 .salkyl; wherein, each instance of C3-i4cycloalkyl, aryl and heterocyclyl is optionally substituted with one, two or three R5 substituents;
[00780] R5 is, in each instance, independently selected from halogen, hydroxy, cyano, nitro, Ci-salkyl, halo-Ci_salkyl, Ci_salkoxy, halo-Ci_salkoxy, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino or Ci-salkyl-thio;
[00781] R6 is, in each instance, independently selected from halogen, hydroxy, cyano, nitro, Ci-salkyl, C2-salkenyl, halo-Ci.salkyl, hydroxy-Ci-8alkyl, Ci-8alkoxy, halo-Ci-salkoxy, Ci-8alkoxy-Ci-salkyl, amino, Ci-salkyl-amino, (Ci-salkyl)2-amino or Ci-salkyl-thio; and, [00782] R7 is C3-i4Cycloalkyl, C3-i4Cycloalkyl-oxy, aryl, heterocyclyl or heteroaryl.
[00783] An embodiment of the use of the compound ofFormula (I) is the use of a compound selected from Formula (II), Formula (III), Formula (IV), Formula (V), Formula (VI), Formula (VII), Formula (VIII), Formula (IX), Formula (X), Formula (XI), Formula (XII), Formula (XIII) or Formula (XIV):
| P Wf W7 .W2. .W-|.
A ,w6 »5 γ 0 /N. ,w6 »s Y 0 ,/N /W6 γ 0
(II), (III), (IV),
wf w7 ^w2 w1x^ wf w7 ^w2 wx ? T r
/N\ Ae »s γ KrNyW6
0 0 0
(V), (VI), (VII),
175
2017204248 22 Jun 2017
Figure AU2017204248B2_D0448
(VIII), (IX), (X),
lY 1 1 11 W4.- zN w6 W5 Y 0 W;f Y^ W7 1 KI 11 w4.· ^N w6 »5 Y 0 r Y N w4_. ^N w6 w= Y 0 ^w2 w3 w7 1 1 11 W4.· -N N w= Y 0
(Xi), (xii), (XIII) or (xiv)
[00784] or a form thereof.
[00785] In an embodiment of the use of the compound of Formula (I), w3 is C-Ri, W6 is C-R2, wi, W4, W5 and w7 are independently C-Ra or N and w7 is C-Rb or N.
[00786] In another embodiment of the use of the compound of Formula (I), w3 is C-R2, W6 is C-Ri, wi, w4, wj and w7 are independently C-Ra or N and w7 is C-Rb or N.
[00787] In another embodiment of the use of the compound of Formula (I), w4 is C-Ri, w7 is C-R2, wi, w3 and w3 are independently C-Ra or N, W2 is C-Rb or N and W6 is C-Rc or N.
[00788] In another embodiment of the use of the compound of Formula (I), w4 is C-R2, w7 is C-Ri, wi, w3 and w3 are independently C-Ra or N, W2 is C-Rb or N and W6 is C-Rc or N.
[00789] In an embodiment of the use of the compound of Formula (II), w3 is C-Ri, we is C-R2, W4, W5 and w7 are independently C-Ra or N and W2 is C-Rb or N.
[00790] In another embodiment of the use of the compound of Formula (II), w3 is C-R2, W6 is C-Ri, W4, W5 and w- are independently C-Ra or N and W2 is C-Rb or N.
[00791] In another embodiment of the use of the compound of Formula (II), W4 is C-Ri, w7 is C-R2, w3 and W5 are independently C-Ra or N, W2 is C-Rb or N and W6 is C-Rc or N.
[00792] In another embodiment of the use of the compound of Formula (II), w4 is C-R2, w7 is C-Ri, w3 and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00793] In an embodiment of the use of the compound of Formula (III), w3 is C-Ri, W(, is C-R2 and wi, w4, w3 and w7 are independently C-Ra or N.
[00794] In another embodiment of the use of the compound of Formula (III), w3 is C-R2, W6 is C-Ri and wi, w4, w~ and w7 are independently C-Ra or N.
176
2017204248 22 Jun 2017 [00795] In another embodiment of the use of the compound of Formula (III), w4 is C-Ri, W7 is
C-R2, wi, W3 and ws are independently C-Ra or N and W6 is C-Rc or N.
[00796] In another embodiment of the use of the compound of Formula (III), w4 is C-R2, W7 is
C-Ri, wi, W3 and ws are independently C-Ra or N and W6 is C-Rc or N.
[00797] In an embodiment of the use of the compound of Formula (IV), w4 is C-Ri, W7 is C-R2, wi and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00798] In another embodiment of the use of the compound of Formula (IV), w4 is C-R2, W7 is
C-Ri, wi and W5 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00799] In an embodiment of the use of the compound of Formula (V), W3 is C-Ri, W6 is C-R2, wi, W5 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00800] In another embodiment of the use of the compound of Formula (V), W3 is C-R2, W6 is
C-Ri, wi, W5 and w2 are independently C-Ra or N and w2 is C-Rb or N.
[00801] In an embodiment of the use of the compound of Formula (VI), W3 is C-Ri, W6 is C-R2, wi, w4 and w2 are independently C-Ra or N and w2 is C-Rb or N.
[00802] In another embodiment of the use of the compound of Formula (VI), W3 is C-R2, W6 is
C-Ri, wi, w4 and w2 are independently C-Ra or N and w2 is C-Rb or N.
[00803] In another embodiment of the use of the compound of Formula (VI), w4 is C-Ri, W7 is C-R2, wi and W3 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00804] In another embodiment of the use of the compound of Formula (VI), w4 is C-R2, W7 is C-Ri, wi and W3 are independently C-Ra or N, w2 is C-Rb or N and W6 is C-Rc or N.
[00805] In another embodiment of the use of the compound of Formula (VII), w4 is C-Ri, W7 is C-R2, wi, W3 and W5 are C-Ra or N and w2 is C-Rb or N.
[00806] In another embodiment of the use of the compound of Formula (VII), w4 is C-R2, W7 is C-Ri, wi, W3 and W5 are C-Ra or N and w2 is C-Rb or N.
[00807] In another embodiment of the use of the compound of Formula (VIII), W3 is C-Ri, W6 is C-R2, wi, w4 and W5 arc C-Ra or N and w2 is C-Rb or N.
[00808] In another embodiment of the use of the compound of Formula (VIII), W3 is C-R2, W6 is C-Ri, wi, w4 and W5 are C-Ra or N and w2 is C-Rb or N.
[00809] In an embodiment ofthe use ofthe compound of Formula (IX), W3 is C-Ri, W6 is C-R2, w4 and W7 are independently C-Ra or N and w2 is C-Rb or N.
177
2017204248 22 Jun 2017 [00810] In another embodiment of the use of the compound of Formula (IX), W3 is C-R2, W6 is C-Ri, W4 and W7 are independently C-Ra or N and w2 is C-Rb or N.
[00811] In another embodiment of the use of the compound of Formula (IX), W4 is C-Ri, W7 is C-R2, w2 is C-Rb or N, W3 is C-Ra or N and W6 is C-Rc or N.
[00812] In another embodiment of the use of the compound of Formula (IX), W4 is C-R2, W7 is C-Ri, w2 is C-Rb or N, W3 is C-Ra or N and W6 is C-Rc or N.
[00813] In an embodiment of the use of the compound of Formula (X), W3 is C-Ri, W6 is C-R2, w2 is C-Rb or N and W5 and W7 are independently C-Ra or N.
[00814] In another embodiment of the use of the compound of Formula (X), W3 is C-R2, W6 is C-Ri, w2 is C-Rb or N and W5 and W7 are independently C-Ra or N.
[00815] In an embodiment of the use of the compound of Formula (XI), W4 is C-Ri, W7 is
C-R2, w2 is C-Rb or N, W5 is C-Ra or N and W6 is C-Rc or N.
[00816] In another embodiment of the use of the compound of Formula (XI), W4 is C-R2, W7 is C-Ri, w2 is C-Rb or N, W5 is C-Ra or N and W6 is C-Rc or N.
[00817] In an embodiment of the use of the compound of Formula (XII), W3 is C-Ri, we is
C-R2 and w4, W5 and w? are independently C-Ra or N.
[00818] In another embodiment of the use of the compound of Formula (XII), w2 is C-R2, is C-Ri and w4, W5 and W7 are independently C-Ra or N.
[00819] In another embodiment of the use of the compound of Formula (XII), W4 is C-Ri, W7 is C-R2, W3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00820] In another embodiment of the use of the compound of Formula (XII), w4 is C-R2, W7 is C-Ri, W3 and W5 are independently C-Ra or N and W6 is C-Rc or N.
[00821] In an embodiment of the use of the compound of Formula (XIII), W3 is C-Ri, W6 is
C-R2, w2 is C-Rb or N and W4 and W5 are independently C-Ra or N.
[00822] Tn another embodiment of the use of the compound of Formula (Χ1Π), W3 is C-R2, W6 is C-Ri, w2 is C-Rb or N and W4 and W5 arc independently C-Ra or N.
[00823] In an embodiment of the use of the compound of Formula (XIV), W4 is C-Ri, W7 is
C-R2, w2 is C-Rb or N and W3 and W5 are independently C-Ra or N.
[00824] In another embodiment of the use of the compound of Formula (XIV), W4 is C-R2, W7 is C-Ri, w2 is C-Rb or N and W3 and W5 are independently C-Ra or N.
178
2017204248 22 Jun 2017 [00825] Another embodiment of the use of the compound of Formula (I) is the use of the compound selected from Formula (11), Formula (111), Formula (IX), Formula (XI) or Formula (ΧΠ):
Figure AU2017204248B2_D0449
(Π), (TH),
Figure AU2017204248B2_D0450
(IX), (XI), or (xii) [00826] or a form thereof.
[00827] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (II):
Figure AU2017204248B2_D0451
O (II) [00828] or a form thereof.
[00829] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (III):
Figure AU2017204248B2_D0452
[00830] or a form thereof.
179
2017204248 22 Jun 2017 [00831] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (IV):
[00832] or a form thereof.
[00833] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (V):
[00834] or a form thereof.
[00835] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (VI):
[00836] or a form thereof [00837] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (VII):
[00838] or a form thereof (VII)
180
2017204248 22 Jun 2017 [00839] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (Vlll):
Figure AU2017204248B2_D0453
[00840] or a form thereof.
[00841] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (IX):
Figure AU2017204248B2_D0454
[00842] or a form thereof.
[00843] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (X):
Figure AU2017204248B2_D0455
w5
Figure AU2017204248B2_D0456
O w7
II w6 (X) [00844] or a form thereof.
[00845] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (XI):
[00846] or a form thereof.
Figure AU2017204248B2_D0457
181
2017204248 22 Jun 2017 [00847] Another embodiment of the compound of Formula (I) is the use of the compound of
Formula (Xll):
Figure AU2017204248B2_D0458
[00848] or a form thereof.
[00849] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (XIII):
[00850] or a form thereof.
[00851] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (XIV):
[00852] or a form thereof.
182
2017204248 22 Jun 2017 [00853] An embodiment of the use of the compound of Formula (I), Formula (II), Formula (111), Formula (IV), Formula (V), Formula (VI), Formula (Vll), Formula (VIII), Formula (IX), Formula (X), Formula (XI), Formula (XII), Formula (XIII) or Formula (XIV) is the use of a compound selected from Formula (la), Formula (Ila), Formula (Illa), Formula (IVa), Formula (Va), Formula (Via), Formula (Vila), Formula (Villa), Formula (IXa), Formula (Xa), Formula (Xia), Formula (Xlla), Formula (XHIa) or Formula (XlVa), respectively:
Figure AU2017204248B2_D0459
183
2017204248 22 Jun 2017
Figure AU2017204248B2_D0460
Figure AU2017204248B2_D0461
[00854] or a form thereof [00855] In an embodiment of the use of the compound of Formula (la), one of w3, W4, W6 and W7 is C-Ri and one other of w3, W4, we and W7 is C-R2, provided that, [00856] when w3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00857] when w3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00858] when W4 is C-R,, then w2 is C-R2 and w3 is C-Ra or N and W6 is C-Rc or N; or, [00859] when W4 is C-R2, then w? is C-Ri and w3 is C-Ra or N and W6 is C-Rc or N.
[00860] In an embodiment of the use of the compound of Formula (Ila), one of w3, W4, W6 and W7 is C-Ri and one other of w3, W4, W6 and W7 is C-R2, provided that, [00861] when w3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00862] when w3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00863] when W4 is C-Ri, then w? is C-R2 and w3 is C-Ra or N and W6 is C-Rc or N; or, [00864] when W4 is C-R2, then W7 is C-Ri and w3 is C-Ra or N and we is C-Rc or N.
[00865] In an embodiment of the use of the compound of Formula (Illa), one of w3, W4, W6 and W7 is C-Ri and one other of w3, W4, W6 and W7 is C-R2, provided that, [00866] when w3 is C-R,, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00867] when w3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00868] when W4 is C-R,, then W7 is C-R2 and w3 is C-Ra or N and we is C-Rc or N; or, [00869] when W4 is C-R2, then w2 is C-Ri and w3 is C-Ra or N and W6 is C-Rc or N.
[00870] In an embodiment of the use of the compound of Formula (IVa), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then W7 is C-Ri.
[00871] Tn an embodiment of the use of the compound of Formula (Va), one of w3 and W6 is C-Ri and the other is C-R2, provided that, when w3 is C-Ri, then we is C-R2; or, when w3 is C-R2, then W6 is C-Ri.
184
2017204248 22 Jun 2017 [00872] In an embodiment of the use of the compound of Formula (Via), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00873] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00874] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00875] when W4 is C-Ri, then w2 is C-R2 and W3 is C-Ra or N and we is C-Rc or N; or, [00876] when W4 is C-R2, then w- is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N.
[00877] In an embodiment of the use of the compound of Formula (Vila), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then W7 is C-Ri.
[00878] In an embodiment of the use of the compound of Formula (Villa), one of W3 and W6 is
C-Ri and the other is C-R2, provided that, when W3 is C-Ri, then W6 is C-R2; or, when W3 is C-R2, then W6 is C-Ri.
[00879] In an embodiment of the use of the compound of Formula (IXa), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, W6 and W7 is C-R2, provided that, [00880] when W3 is C-Ri, then we is C-R2 and W4 and W7 are independently C-Ra or N; or, [00881] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00882] when W4 is C-Ri, then w? is C-R2 and W3 is C-Ra or N and W6 is C-Rc or N; or, [00883] when W4 is C-R2, then w? is C-Ri and W3 is C-Ra or N and W6 is C-Rc or N.
[00884] In an embodiment of the use of the compound of Formula (Xa), one of W3 and W6 is C-Ri and the other is C-R2, provided that, when W3 is C-Ri, then W6 is C-R2; or, when W3 is C-R2, then W6 is C-Ri.
[00885] In an embodiment of the use of the compound of Formula (Xia), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then W7 is C-Ri.
[00886] In an embodiment of the use of the compound of Formula (Xlla), one of W3, W4, W6 and W7 is C-Ri and one other of W3, W4, we and W7 is C-R2, provided that, [00887] when W3 is C-Ri, then W6 is C-R2 and W4 and W7 are independently C-Ra or N; or, [00888] when W3 is C-R2, then W6 is C-Ri and W4 and W7 are independently C-Ra or N; or, [00889] when W4 is C-Ri, then w- is C-R2 and W3 is C-Ra or N and W6 is C-Rc or N; or, [00890] when W4 is C-R2, then w2 is C-Ri and W3 is C-Ra or N and we is C-Rc or N.
185
2017204248 22 Jun 2017 [00891] In an embodiment of the use of the compound of Formula (XHIa), one of w3 and W6 is C-Ri and the other is C-R2, provided that, when w3 is C-Ri, then W6 is C-R2; or, when w3 is C-R2, then W6 is C-Ri.
[00892] In an embodiment of the use of the compound of Formula (XlVa), one of W4 and W7 is C-Ri and the other is C-R2, provided that, when W4 is C-Ri, then W7 is C-R2; or, when W4 is C-R2, then W7 is C-Ri.
[00893] An embodiment of the use of the compound of Formula (I), Formula (II), Formula (III), Formula (IX), Formula (XI) or Formula (XII) is the use of the compound selected from Formula (la), Formula (Ila), Formula (Illa), Formula (IXa), Formula (Xia) or Formula (Xlla), respectively:
Figure AU2017204248B2_D0462
Figure AU2017204248B2_D0463
(Xia), or
Figure AU2017204248B2_D0464
Figure AU2017204248B2_D0465
(XTIa) [00894] or a form thereof [00895] Another embodiment of the use of the compound of Formula (I) is the use of the compound of Formula (la):
[00896] or a form thereof.
Figure AU2017204248B2_D0466
186 [00897] Another embodiment of the use of the compound of Formula (II) is the use of the compound of Formula (Ila):
2017204248 22 Jun 2017 Rb
Figure AU2017204248B2_D0467
[00898] or a form thereof.
[00899] Another embodiment of the use of the compound of Formula (III) is the use of the compound of Formula (Illa):
Figure AU2017204248B2_D0468
[00900] or a form thereof.
[00901] Another embodiment of the use of the compound of Formula (IV) is the use of the compound of Formula (IVa):
Figure AU2017204248B2_D0469
[00902] or a form thereof.
187 [00903] Another embodiment of the use of the compound of Formula (V) is the use of the compound of Formula (Va):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0470
[00904] or a form thereof.
[00905] Another embodiment of the use of the compound of Formula (VI) is the use of the compound of Formula (Via):
Figure AU2017204248B2_D0471
[00906] or a form thereof.
[00907] Another embodiment of the use of the compound of Formula (VII) is the use of the compound of Formula (Vila):
Figure AU2017204248B2_D0472
[00908] or a form thereof.
188 [00909] Another embodiment of the use of the compound of Formula (VIII) is the use of the compound of Formula (Villa):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0473
[00910] or a form thereof.
[00911] Another embodiment of the use of the compound of Formula (IX) is the use of the compound of Formula (IXa):
Figure AU2017204248B2_D0474
(IXa) [00912] or a form thereof.
[00913] Another embodiment of the use of the compound of Formula (X) is the use of the compound of Formula (Xa):
Figure AU2017204248B2_D0475
[00914] or a form thereof.
[00915] Another embodiment of the use of the compound of Formula (XI) is the use of the compound of Formula (Xia):
189
2017204248 22 Jun 2017
Figure AU2017204248B2_D0476
[00916] or a form thereof.
[00917] Another embodiment of the use of the compound of Formula (ΧΠ) is the use of the compound of Formula (Xlla):
Figure AU2017204248B2_D0477
[00918] or a form thereof.
[00919] Another embodiment of the use of the compound of Formula (XIII) is the use of the compound of Formula (XHIa):
Figure AU2017204248B2_D0478
[00920] or a form thereof.
190 [00921] Another embodiment of the use of the compound of Formula (XIV) is the use of the compound of Formula (XlVa):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0479
[00922] or a form thereof.
[00923] An embodiment of the use of the compound of Formula (la) is the use of a compound of Formula (Ial), Formula (Ia2), Formula (Ia3) or Formula (Ia4):
Figure AU2017204248B2_D0480
[00924] or a form thereof.
[00925] An embodiment of the use of the compound of Formula (Ila) is the use of a compound of Formula (Hal), Formula (IIa2), Formula (IIa3) or Formula (IIa4):
Figure AU2017204248B2_D0481
Figure AU2017204248B2_D0482
Ri
Rc
191
2017204248 22 Jun 2017
Figure AU2017204248B2_D0483
Figure AU2017204248B2_D0484
[00926] or a form thereof.
[00927] An embodiment of the use of the compound of Formula (Illa) is the use of a compound of Formula (Illal), Formula (IIIa2), Formula (IIIa3) or Formula (IIIa4):
Figure AU2017204248B2_D0485
(Illal),
Figure AU2017204248B2_D0486
Figure AU2017204248B2_D0487
[00928] or a form thereof.
[00929] An embodiment of the use of the compound of Formula (IVa) is the use of a compound of Formula (IVal) or Formula (IVa2):
Figure AU2017204248B2_D0488
[00930] or a form thereof.
192
2017204248 22 Jun 2017 [00931] An embodiment of the use of the compound of Formula (Va) is the use of a compound of Formula (Vai) or Formula (Va2):
Figure AU2017204248B2_D0489
(Vai) or
Figure AU2017204248B2_D0490
[00932] or a form thereof [00933] An embodiment of the use of the compound of Formula (Via) is the use of a compound of Formula (Vial), Formula (VIa2), Formula (VIa3) or Formula (VIa2):
Rb Rg Rb Ra
Figure AU2017204248B2_D0491
Figure AU2017204248B2_D0492
[00934] or a form thereof.
193
2017204248 22 Jun 2017 [00935] An embodiment of the use of the compound of Formula (Vila) is the use of a compound of Formula (Vllal ) or Formula (Vlla2):
Figure AU2017204248B2_D0493
[00936] or a form thereof.
[00937] An embodiment of the use of the compound of Formula (Villa) is the use of a compound of Formula (VUIal) or Formula (VIIIa2):
Figure AU2017204248B2_D0494
[00938] or a form thereof.
[00939] An embodiment of the use of the compound of Formula (IXa) is the use of a compound of Formula (IXal), Formula (IXa2), Formula (IXa3) or Formula (IXa4):
Figure AU2017204248B2_D0495
194
2017204248 22 Jun 2017
Figure AU2017204248B2_D0496
Figure AU2017204248B2_D0497
[00940] or a form thereof.
[00941] An embodiment of the use of the compound of Formula (Xa) is the use of a compound of Formula (Xal) or Formula (Xa2):
Figure AU2017204248B2_D0498
Figure AU2017204248B2_D0499
[00942] or a form thereof.
[00943] An embodiment of the use of the compound of Formula (Xia) is the use of a compound of Formula (XIal) or Formula (XIa2):
Figure AU2017204248B2_D0500
Figure AU2017204248B2_D0501
[00944] or a form thereof.
195
2017204248 22 Jun 2017 [00945] An embodiment of the use of the compound of Formula (Xlla) is the use of a compound of Formula (Xllal ), Formula (Xlla2), Formula (Xlla3) or Formula (Xlla4):
Figure AU2017204248B2_D0502
(XIIa3) or (XIIa4) [00946] or a form thereof.
[00947] An embodiment of the use of the compound of Formula (XHIa) is the use of a compound of Formula (XHIal) or Formula (XIIIa2):
Figure AU2017204248B2_D0503
[00948] or a form thereof.
[00949] An embodiment of the use of the compound of Formula (XlVa) is the use of a compound of Formula (XlVal) or Formula (XIVa2):
Figure AU2017204248B2_D0504
[00950] or a form thereof.
196 [00951] An embodiment of the use of the compound of Formula (la) is the use of the compound of Formula (lai ):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0505
[00952] or a form thereof.
[00953] An embodiment of the use of the compound of Formula (la) is the use of the compound of Formula (Ia2):
Figure AU2017204248B2_D0506
(Ia2) [00954] or a form thereof.
[00955] An embodiment of the use of the compound of Formula (la) is the use of the compound of Formula (Ia3):
Figure AU2017204248B2_D0507
[00956] or a form thereof.
197 [00957] An embodiment of the use of the compound of Formula (la) is the use of the compound of Formula (la4):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0508
[00958] or a form thereof [00959] An embodiment of the use of the compound of Formula (Ila) is the use of the compound of Formula (Hal):
Figure AU2017204248B2_D0509
[00960] or a form thereof.
[00961] An embodiment of the use of the compound of Formula (Ila) is the use of the compound of Formula (IIa2):
Figure AU2017204248B2_D0510
[00962] or a form thereof.
198 [00963] An embodiment of the use of the compound of Formula (Ila) is the use of the compound of Formula (lla3):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0511
[00964] or a form thereof.
[00965] An embodiment of the use of the compound of Formula (Ila) is the use of the compound of Formula (IIa4):
Figure AU2017204248B2_D0512
[00966] or a form thereof.
[00967] An embodiment of the use of the compound of Formula (Illa) is the use of the compound of Formula (Illal):
Figure AU2017204248B2_D0513
(Illal) [00968] or a form thereof.
199 [00969] An embodiment of the use of the compound of Formula (Illa) is the use of the compound of Formula (llla2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0514
[00970] or a form thereof.
[00971] An embodiment of the use of the compound of Formula (Illa) is the use of the compound of Formula (IIIa3):
Figure AU2017204248B2_D0515
[00972] or a form thereof.
[00973] An embodiment of the use of the compound of Formula (Illa) is the use of the compound of Formula (IIIa4):
Figure AU2017204248B2_D0516
[00974] or a form thereof.
200 [00975] An embodiment of the use of the compound of Formula (IVa) is the use of the compound of Formula (IVal):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0517
[00976] or a form thereof.
[00977] An embodiment of the use of the compound of Formula (IVa) is the use of the compound of Formula (IVa2):
Figure AU2017204248B2_D0518
[00978] or a form thereof.
[00979] An embodiment of the use of the compound of Formula (Va) is the use of the compound of Formula (Vai):
Figure AU2017204248B2_D0519
[00980] or a form thereof.
201 [00981] An embodiment of the use of the compound of Formula (Va) is the use ofthe compound of Formula (Va2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0520
[00982] or a form thereof.
[00983] An embodiment of the use of the compound of Formula (Via) is the use of the compound of Formula (Vial):
Figure AU2017204248B2_D0521
[00984] or a form thereof.
[00985] An embodiment of the use of the compound of Formula (Via) is the use of the compound of Formula (VIa2):
Figure AU2017204248B2_D0522
[00986] or a form thereof.
202 [00987] An embodiment of the use of the compound of Formula (Via) is the use of the compound of Formula Formula (Vla3):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0523
[00988] or a form thereof.
[00989] An embodiment of the use of the compound of Formula (Via) is the use of the compound of Formula (VIa4):
Figure AU2017204248B2_D0524
[00990] or a form thereof.
[00991] An embodiment of the use of the compound of Formula (Vila) is the use of the compound of Formula (Vllal):
Rb Ra
Figure AU2017204248B2_D0525
Ra O (Vllal) [00992] or a form thereof.
203 [00993] An embodiment of the use of the compound of Formula (Vila) is the use of the compound of Formula (Vlla2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0526
[00994] or a form thereof [00995] An embodiment of the use of the compound of Formula (Villa) is the use of the compound of Formula (VUIal):
Figure AU2017204248B2_D0527
[00996] or a form thereof.
[00997] An embodiment of the use of the compound of Formula (Villa) is the use of the compound of Formula (VIIIa2):
Figure AU2017204248B2_D0528
[00998] or a form thereof.
204 [00999] An embodiment of the use of the compound of Formula (IXa) is the use of the compound of Formula (IXal ):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0529
[001000] or a form thereof.
[001001] An embodiment of the use of the compound of Formula (IXa) is the use of the compound of Formula (IXa2):
Figure AU2017204248B2_D0530
[001002] or a form thereof.
[001003] An embodiment of the use of the compound of Formula (IXa) is the use of the compound of Formula (IXa3):
Figure AU2017204248B2_D0531
[001004] or a form thereof.
205 [001005] An embodiment of the use of the compound of Formula (IXa) is the use of the compound of Formula (!Xa4):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0532
[001006] or a form thereof.
[001007] An embodiment of the use of the compound of Formula (Xa) is the use of the compound of Formula (Xal):
Figure AU2017204248B2_D0533
[001008] or a form thereof.
[001009] An embodiment of the use of the compound of Formula (Xa) is the use of the compound of Formula (Xa2):
Figure AU2017204248B2_D0534
[001010] or a form thereof.
206 [001011] An embodiment of the use of the compound of Formula (Xia) is the use of the compound of Formula (Xlal ):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0535
[001012] or a form thereof.
[001013] An embodiment of the use of the compound of Formula (Xia) is the use of the compound of Formula (XIa2):
Figure AU2017204248B2_D0536
[001014] or a form thereof.
[001015] An embodiment of the use of the compound of Formula (Xlla) is the use of the compound of Formula (Xllal):
Figure AU2017204248B2_D0537
[001016] or a form thereof.
207 [001017] An embodiment of the use of the compound of Formula (Xlla) is the use of the compound of Formula (Xlla2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0538
[001018] or a form thereof [001019] An embodiment of the use of the compound of Formula (Xlla) is the use of the compound of Formula (XIIa3):
Figure AU2017204248B2_D0539
[001020] or a form thereof [001021] An embodiment of the use of the compound of Formula (Xlla) is the use of the compound of Formula (XIIa4):
Figure AU2017204248B2_D0540
[001022] or a form thereof
208 [001023] An embodiment of the use of the compound of Formula (XHIa) is the use of the compound of Formula (Xlllal ):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0541
[001024] or a form thereof.
[001025] An embodiment of the use of the compound of Formula (XHIa) is the use of the compound of Formula (XIIIa2):
Figure AU2017204248B2_D0542
[001026] or a form thereof.
[001027] An embodiment of the use of the compound of Formula (XlVa) is the use of the compound of Formula (XlVal):
Figure AU2017204248B2_D0543
[001028] or a form thereof.
209 [001029] An embodiment of the use of the compound of Formula (XlVa) is the use of the compound of Formula (XlVa2):
2017204248 22 Jun 2017
Figure AU2017204248B2_D0544
[001030] or a form thereof.
PATIENT POPULATION [001031] In some embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a subject suffering from SMA. In other embodiments, a compound of Formula (I) or a form thereof, is administered to a subject predisposed or susceptible to SMA. In a specific embodiment, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human subject having SMA, wherein SMA is caused by an inactivating mutation or deletion in the SMN 1 gene on both chromosomes, resulting in a loss of SMN1 gene function. In certain embodiments, the human subject is genotyped prior to administration of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof to determine whether the subject has an inactivating mutation or deletion in the teleomeric copy of the SMN1 gene in both chromosomes, which results in a loss of SMN1 gene function. In some embodiments, a compound of Formula (I) or a form thereof, or pharmaceutical composition thereof is administered to a subject with Type 0 SMA. In some embodiments, a compound of Formula (T) or a form thereof, or a pharmaceutical composition thereof is administered to a subject with Type 1 SMA. In other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a subject with Type 2 SMA. In other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a subject with Type 3 SMA. In some embodiments, a compound of Formula (T) or a form thereof, or a pharmaceutical composition thereof is administered to a subject with Type 4 SMA. In certain embodiments, the human subject is an SMA patient.
210
2017204248 22 Jun 2017 [001032] In certain embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a subject that will or might benefit from enhanced inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMNt and/or SMN2 gene. In specific embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a subject that will or may benefit from enhanced Smn protein expression.
[001033] In certain embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human that has an age in a range of from about 0 months to about 6 months old, from about 6 to about 12 months old, from about 6 to about 18 months old, from about 18 to about 36 months old, from about 1 to about 5 years old, from about 5 to about 10 years old, from about 10 to about 15 years old, from about 15 to about 20 years old, from about 20 to about 25 years old, from about 25 to about 30 years old, from about 30 to about 35 years old, from about 35 to about 40 years old, from about 40 to about 45 years old, from about 45 to about 50 years old, from about 50 to about 55 years old, from about 55 to about 60 years old, from about 60 to about 65 years old, from about 65 to about 70 years old, from about 70 to about 75 years old, from about 75 to about 80 years old, from about 80 to about 85 years old, from about 85 to about 90 years old, from about 90 to about 95 years old or from about 95 to about 100 years old.
[001034] In some embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human infant. In other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human toddler. In other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human child. In other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to a human adult. In yet other embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof is administered to an elderly human. [001035] In some embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other embodiments, an effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other
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2017204248 22 Jun 2017 embodiments, a prophylactically effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other embodiments, a therapeutically effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA.
[001036] In some embodiments, a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to an SMA patient to treat or ameliorate SMA. In other embodiments, an effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to an SMA patient to treat or ameliorate SMA. In other embodiments, a prophylactically effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to an SMA patient to prevent advancement of SMA. In other embodiments, a therapeutically effective amount of a compound of Formula (I) or a form thereof, or a pharmaceutical composition thereof, is administered to an SMA patient to treat or ameliorate SMA.
[001037] In some embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject suffering from SMA. In other embodiments, a compound of Formula (I) or a form thereof, is administered to a subject predisposed or susceptible to SMA. In a specific embodiment, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a human subject having SMA, wherein SMA is caused by an inactivating mutation or deletion in the SMN1 gene on both chromosomes, resulting in a loss of SMN 1 gene function. In certain embodiments, the human subject is genotyped prior to administration of a compound of Formula (I) or a form thereof, or a medicament thereof to determine whether the subject has an inactivating mutation or deletion in the teleomeric copy of the SMN1 gene in both chromosomes, which results in a loss of SMN1 gene function. In some embodiments, a compound of Formula (I) or a form thereof, or medicament thereof is administered to a subject with Type 0 SMA. In some embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject with Type 1 SMA. In other embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject with Type 2 SMA. In other embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject with Type 3 SMA. In some embodiments, a
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2017204248 22 Jun 2017 compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject with Type 4 SMA. In certain embodiments, the human subject is an SMA patient.
[001038] In certain embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject that will or might benefit from enhanced inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene. In specific embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a subject that will or may benefit from enhanced Smn protein expression.
[001039] In certain embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a human that has an age in a range of from about 0 months to about 6 months old, from about 6 to about 12 months old, from about 6 to about 18 months old, from about 18 to about 36 months old, from about 1 to about 5 years old, from about 5 to about 10 years old, from about 10 to about 15 years old, from about 15 to about 20 years old, from about 20 to about 25 years old, from about 25 to about 30 years old, from about 30 to about 35 years old, from about 35 to about 40 years old, from about 40 to about 45 years old, from about 45 to about 50 years old, from about 50 to about 55 years old, from about 55 to about 60 years old, from about 60 to about 65 years old, from about 65 to about 70 years old, from about 70 to about 75 years old, from about 75 to about 80 years old, from about 80 to about 85 years old, from about 85 to about 90 years old, from about 90 to about 95 years old or from about 95 to about 100 years old.
[001040] In some embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a human infant. In other embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a human toddler. In other embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a human child. In other embodiments, a compound of Formula (T) or a form thereof, or a medicament thereof is administered to a human adult. In yet other embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to an elderly human.
[001041] In some embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other embodiments, an effective amount of a compound of Formula (I) or a form
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2017204248 22 Jun 2017 thereof, or a medicament thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other embodiments, a prophylactically effective amount of a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA. In other embodiments, a therapeutically effective amount of a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to a patient to prevent the onset of SMA in a patient at risk of developing SMA.
[001042] In some embodiments, a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to an SMA patient to treat or ameliorate SMA. In other embodiments, an effective amount of a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to an SMA patient to treat or ameliorate SMA. In other embodiments, a prophylactically effective amount of a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to an SMA patient to prevent advancement of SMA. In other embodiments, a therapeutically effective amount of a compound of Formula (I) or a form thereof, or a medicament thereof, is administered to an SMA patient to treat or ameliorate SMA.
MODE OF ADMINISTRATION [001043] When administered to a patient, a compound of Formula (I) or a form thereof is preferably administered as a component of a composition that optionally comprises a pharmaceutically acceptable carrier, excipient or diluent. The composition can be administered orally, or by any other convenient route, for example, by infusion or bolus injection, by absorption through epithelial or mucocutaneous linings (e.g., oral mucosa, rectal, and intestinal mucosa) and may be administered together with another biologically active agent. Administration can be systemic or local. Various delivery systems are known, e.g., encapsulation in liposomes, microparticles, microcapsules, capsules, and can be used to administer the compound.
[001044] Methods of administration include but are not limited to parenteral, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, intranasal, epidural, oral, sublingual, intranasal, intracerebral, intravaginal, transdermal, rectally, by inhalation, or topically, particularly to the ears, nose, eyes, or skin. The mode of administration is left to the discretion of
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2017204248 22 Jun 2017 the practitioner. In most instances, administration will result in the release of a compound into the bloodstream. In a specific embodiment, a compound is administered orally.
DOSAGE AND DOSAGE FORMS [001045] The amount of a compound of Formula (I) or a form thereof that will be effective in the treatment of SMA depend, e.g., on the route of administration, the type of SMA, the general health of the subject, ethnicity, age, weight, and gender of the subject, diet, time, and the severity of SMA, and should be decided according to the judgment ofthe practitioner and each patient’s or subject’s circumstances.
[001046] In specific embodiments, an “effective amount,” prophylactically effective amount or therapeutically effective amount in the context of the administration of a compound of Formula (I) or a form thereof, or composition or medicament thereof refers to an amount of a compound of Formula (I) which has a therapeutic effect and/or beneficial effect. In certain specific embodiments, an “effective amount,” prophylactically effective amount or “therapeutically effective amount” in the context of the administration of a compound of Formula (I) or a form thereof, or composition or medicament thereof results in one, two or more ofthe following effects: (i) reduces or ameliorates the severity of SMA; (ii) delays onset of SMA; (iii) inhibits the progression of SMA; (iv) reduces hospitalization of a subject; (v) reduces hospitalization length for a subject; (vi) increases the survival of a subject; (vii) improves the quality of life of a subject; (viii) reduces the number of symptoms associated with SMA; (ix) reduces or ameliorates the severity of a symptom/s) associated with SMA; (x) reduces the duration of a symptom associated with SMA; (xi) prevents the recurrence of a symptom associated with SMA; (xii) inhibits the development or onset of a symptom of SMA; and/or (xiii) inhibits of the progression of a symptom associated with SMA. In certain embodiments, an effective amount of a compound of Formula (I) or a form thereof is an amount effective to enhance inclusion of exon 7 of SMN2 into SMN2 mRNA that is transcribed from the SMN2 gene and increases the levels of Smn protein produced from the SMN2 gene and thus producing a desired beneficial effect in a subject in need thereof. In some instances, the desired effect can be determined by analyzing or quantifying: (1) the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene; or (2) the levels of Smn protein produced from the SMN2
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2017204248 22 Jun 2017 gene. Non-limiting examples of effective amounts of a compound of Formula (I) or a form thereof are described herein.
[001047] For example, the effective amount may be the amount required to treat SMA in a human subject in need thereof, or the amount required to enhance inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene in a human subject in need thereof, or the amount required to increase levels of Smn protein produced from the SMN2 gene in a human subject in need thereof. In a specific embodiment, the human subject is an SMA patient.
[001048] In general, the effective amount will be in a range of from about 0.001 mg/kg/day to about 500 mg/kg/day for a patient or subject having a weight in a range of between about 1 kg to about 200 kg. The typical adult subject is expected to have a median weight in a range of between about 70 and about 100 kg.
[001049] Within the scope of the present description, the “effective amount” of a compound of Formula (I) or a form thereof for use in the manufacture of a medicament, the preparation of a pharmaceutical kit or in a method for treating SMA in a human subject in need thereof, is intended to include an amount in a range of from about 0.001 mg to about 35,000 mg. In a specific embodiment, the human subject is an SMA patient.
[001050] The compositions described herein are formulated for administration to the subject via any drug delivery route known in the art. Nonlimiting examples include oral, ocular, rectal, buccal, topical, nasal, ophthalmic, subcutaneous, intramuscular, intraveneous (bolus and infusion), intracerebral, transdermal, and pulmonary routes of administration.
PHARMACEUTICAL COMPOSITIONS [001051] Embodiments described herein include the use of a compound of Formula (1) or a form thereof in a pharmaceutical composition. In a specific embodiment, described herein is the use of a compound of Formula (I) or a form thereof in a pharmaceutical composition for treating SMA in a human subject in need thereof comprising administering an effective amount of a compound of Formula (I) or a form thereof in admixture with a pharmaceutically acceptable excipient. In a specific embodiment, the human subject is an SMA patient.
[001052] A compound of Formula (I) or a form thereof may optionally be in the form of a composition comprising the compound or a form thereof and an optional carrier, excipient or diluent. Other embodiments provided herein include pharmaceutical compositions comprising
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2017204248 22 Jun 2017 an effective amount of a compound of Formula (I) or a form thereof and a pharmaceutically acceptable carrier, excipient, or diluent. In a specific embodiment, the pharmaceutical compositions are suitable for veterinary and/or human administration. The pharmaceutical compositions provided herein can be in any form that allows for the composition to be administered to a subject.
[001053] In a specific embodiment and in this context, the term “pharmaceutically acceptable carrier, excipient or diluent” means a carrier, excipient or diluent approved by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more particularly in humans. The term “carrier” refers to a diluent, adjuvant (e.g., Freund’s adjuvant (complete and incomplete)), excipient, or vehicle with which a therapeutic agent is administered. Such pharmaceutical carriers can be sterile liquids, such as water and oils, including those of petroleum, animal, vegetable or synthetic origin, such as peanut oil, soybean oil, mineral oil, sesame oil and the like. Water is a specific carrier for intravenously administered pharmaceutical compositions. Saline solutions and aqueous dextrose and glycerol solutions can also be employed as liquid carriers, particularly for injectable solutions.
[001054] Typical compositions and dosage forms comprise one or more excipients. Suitable excipients are well-known to those skilled in the art of pharmacy, and non limiting examples of suitable excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glycerol monostearate, talc, sodium chloride, dried skim milk, glycerol, propylene, glycol, water, ethanol and the like. Whether a particular excipient is suitable for incorporation into a pharmaceutical composition or dosage form depends on a variety of factors well known in the art including, but not limited to, the way in which the dosage form will be administered to a patient and the specific active ingredients in the dosage form. Further provided herein are anhydrous pharmaceutical compositions and dosage forms comprising one or more compounds of Formula (I) or a form thereof as described herein. The compositions and single unit dosage forms can take the form of solutions or syrups (optionally with a flavoring agent), suspensions (optionally with a flavoring agent), emulsions, tablets (e.g., chewable tablets), pills, capsules, granules, powder (optionally for reconstitution), taste-masked or sustained-release formulations and the like.
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2017204248 22 Jun 2017 [001055] Pharmaceutical compositions provided herein that are suitable for oral administration can be presented as discrete dosage forms, such as, but are not limited to, tablets, caplets, capsules, granules, powder, and liquids. Such dosage forms contain predetermined amounts of active ingredients, and may be prepared by methods of pharmacy well known to those skilled in the art.
[001056] Examples of excipients that can be used in oral dosage forms provided herein include, but are not limited to, binders, fillers, disintegrants, and lubricants.
BIOMARKERS [001057] In certain embodiments, the amount of mRNA that is transcribed from the SMN1 gene and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 is used as a biomarker for SMA. In certain embodiments, the amount of mRNA that is transcribed from the SMN1 gene and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 is used as a bio marker for SMA. In other embodiments, the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 is used as a biomarker for an SMA patient being treated with a compound, such as disclosed herein. In other embodiments, the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 is used as a bio marker for an SMA patient being treated with a compound, such as disclosed herein. In some embodiments, a change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and a corresponding change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 is a biomarker for a patient being treated with a compound, such as disclosed herein. In a specific embodiment, the patient is an SMA patient.
[001058] In a specific embodiment, an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 and a corresponding decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 after the administration of a compound (e.g., a compound of Formula (I) disclosed herein) indicates that the compound may be effective to treat SMA. In another specific embodiment, a decrease in the amount of mRNA that is transcribed from the SMN2 gene and includes exon 7 of SMN2 and a corresponding
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2017204248 22 Jun 2017 increase in the amount of mRNA that is transcribed from the SMN2 gene and does not include exon 7 of SMN2 after the administration of a compound (e.g., a compound of Formula (1) disclosed herein) indicates that the compound will not be effective to treat SMA. In accordance with these embodiments, an SMN primer)s) and/or an SMN probe described below can be used in assays, such as PCR (e.g., qPCR) and RT-PCR (e.g., RT-qPCR or endpoint RT-PCR) to assess and/or quantify the amount of mRNA that is transcribed from the SMN1 gene and/or SMN2 gene and does or does not include exon 7 of SMN1 and/or SMN2.
[001059] In one embodiment, provided herein are SMN primers and/or SMN probes (e.g., a forward primer having the nucleotide sequence of SEQ ID NO. 1, 7, 8, 11 or 13; and/or a reverse primer having the nucleotide sequence of SEQ ID NO. 9 or 12; and/or an SMN probe such as a SEQ ID NO. 3 or 10) for amplifying nucleic acids encoding or encoded by human SMN1 and/or SMN2. These primers can be used as primers in, e.g., RT-PCR (such as RT-PCR, endpoint RTPCR and/or RT-qPCR as described herein or as known to one skilled in the art), PCR (such as qPCR) or rolling circle amplification, and as probes in hybridization assays, such as a Northern blot and/or a Southern blot assay. As utilized in the Biological Examples herein, endpoint RTPCR is a reverse transcription-polymerase chain reaction that is carried out for a certain number of amplification cycles (or until starting materials are exhausted) following by a quantification of each of the DNA products using, e.g., gel electrophoretic separation, staining with a fluorescent dye, quantification of fluorescence and the like.
[001060] SEQ ID NO. 1 hybridizes to DNA or RNA comprising nucleotides corresponding to nucleotides 22 to 40 of exon 7 of SMN1 and/or SMN2, SEQ ID NO. 2 hybridizes to DNA or RNA comprising nucleotides corresponding to nucleotides 4 to 26 of the firefly luciferase coding sequence; SEQ ID NO. 7 hydridizes to nucleic acid sequences (e.g., the sense strand of DNA) comprising nucleotides corresponding to nucleotides 32 to 54 of exon 7 of SMN1 and/or SMN2 and nucleotides 1 to 4 of exon 8 of SMN1 and/or SMN2, SEQ ID NO. 8 hybridizes to nucleic acid sequences (e.g., the sense strand of DNA) comprising nucleotides corresponding, in order, to nucleotides 87 to 111 of exon 7 of SMN1 and/or SMN2 and nucleotides 1 to 3 of exon 8 of SMN1 and/or SMN2, SEQ ID NO. 9 hybridizes to nucleic acid sequences (e.g., the antisense strand of DNA or RNA) comprising nucleotides corresponding to nucleotides 39 to 62 of exon 8 of SMN1 and/or SMN2, SEQ ID NO. 11 hybridizes to nucleic acid sequences (e.g., the sense strand of DNA) comprising nucleotides corresponding to nucleotides 43 to 63 of exon 6 of
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SMNl and/or SMN2, SEQ ID NO. 12 hybridizes to nucleic acid sequences (e.g., the antisense strand of DNA or RNA) comprising nucleotides corresponding to nucleotides 51 to 73 of exon 8 of SMNl and/or SMN2, and SEQ ID NO. 13 hybridizes to nucleic acid sequence (e.g., the sense strand of DNA) comprising nucleotides corresponding to nucleotides 22 to 46 of exon 6 of SMNl and/or SMN2.
[001061] Accordingly, an oligonucleotide corresponding to SEQ ID NO. 9, 11, 12 and/or 13 can be used in an amplification reaction to amplify nucleic acids encoding or encoded by human SMNl and/or SMN2 lacking exon 7 of human SMNl and/or SMN2 and nucleic acid encoding or encoded by human SMNl and/or SMN2 and includes exon 7 of human SMNl and/or SMN2. In contrast, an oligonucleotide corresponding to SEQ ID NO. 8 in conjunction with a downstream reverse primer (e.g., SEQ ID NO. 9 or 12) can be used to amplify nucleic acids encoding or encoded by human SMNl and/or SMN2 lacking exon 7 of human SMNl and/or SMN2 and an oligonucleotide corresponding to SEQ ID NO. 1 and 7 in conjunction with a downstream reverse primer (e.g., SEQ ID NO. 9 or 12) can be used to amplify nucleic acids encoding or encoded by human SMNl and/or human SMN2 and includes exon 7 of SMNl and/or SMN2.
[001062] SEQ ID NO. 3 hybridizes to nucleic acid sequences (e.g., the sense strand of DNA) comprising nucleotides corresponding, in order, to nucleotides 50 to 54 of exon 7 of human SMNl and/or SMN2 and nucleotides 1 to 21 of exon 8 of human SMNl and/or SMN2, and SEQ ID NO. 10 hybridizes to nucleic acid sequences (e.g., the sense strand of DNA) comprising nucleotides corresponding to nucleotides 7 to 36 of exon 8 of human SMNl and/or SMN2. SEQ ID NO. 3 is useful as a probe to detect mRNA that is transcribed from the minigene and includes exon 7 of SMN 1 and/or SMN2, described herein or described in International Publication No. WO 2009/151546 or U.S. Patent Application Publication No. 2011/0086833 (each of which is incorporated herein by reference in its entirety) and to detect mRNA that is transcribed from human SMNl and/or SMN2 and includes exon 7 of SMNl and/or SMN2. In addition, SEQ ID NO. 10 is useful as a probe to detect mRNA that is transcribed from the minigcnc and docs or does not include exon 7 of SMNl and/or SMN2 and to detect mRNA that is transcribed from human SMNl and/or SMN2, described herein or as described in International Publication No. WO 2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety.
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2017204248 22 Jun 2017 [001063] In a specific embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1,7, 11 or 13 and/or SEQ ID NO. 2, 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to determine whether a compound (e.g., a compound of Formula (I) or a form thereof) enhances the inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from an SMN1 and/or SMN2 gene.
[001064] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in a patient sample. In a specific embodiment, the patient is an SMA patient.
[001065] In another embodiment, a primer and/or probe described below in the Biological Examples (e.g., SMN primers such as SEQ ID NO. 1, 7, 11 or 13 and/or SEQ ID NO. 9 or 12, and/or SMN probes such as a SEQ ID NO. 3 or 10) is used in an assay, such as RT-PCR, RTqPCR, endpoint RT-PCR, PCR, qPCR, rolling circle amplification and, as applicable, Northern blot or Southern blot (e.g., an assay such as described below in the Biological Examples), to monitor a patient’s response to a compound (e.g., a compound of Formula (I) or a form thereof). In a specific embodiment, the patient is an SMA patient.
[001066] A sample (e.g., a blood sample, PBMC sample, or tissue sample, such as a skin or muscle tissue sample) from a patient can be obtained using techniques known to one skilled in the art and the primers and/or probes described in the Biological Examples below can be used in assays (e.g., PCR, RT-PCR, RT-qPCR, qPCR, endpoint RT-PCR, rolling circle amplification, Northern blot and Southern blot) to determine the amount of mRNA that is transcribed from the SMN1 and/or SMN2 genes (e.g., the amount of mRNA that includes exon 7 of SMN2 transcribed from the SMN2 gene). A sample derived from a patient refers to a sample that is processed and/or manipulated after being obtained from the patient using techniques known to
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2017204248 22 Jun 2017 one skilled in the art. For example, a sample from a patient can be processed to, e.g., extract RNA, using techniques known to one of skill in the art. A sample from a patient can be processed to, e.g., extract RNA and the RNA is reversed transcribed to produce cDNA. In a specific embodiment, the patient is an SMA patient.
[001067] In a specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1,7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., an RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001068] In another specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and SMN2 genes, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1,7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., an RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and SMN2 genes. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001069] The amount of mRNA that is transcribed from the human SMN1 and SMN2 genes that includes exon 7 of SMN 1 and SMN2 and the amount of mRNA that is transcribed from the human SMN1 and SMN2 genes and does not include exon 7 of SMN 1 and SMN2 can be differentiated from each other by, e.g., size of the RNA or DNA fragment generated from SMN1
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2017204248 22 Jun 2017 and SMN2 mRNA that includes exon 7 of SMN1 and SMN2 and from SMN1 and SMN2 mRNA that do not include exon 7 of SMN 1 and SMN2.
[001070] In another specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., an RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001071] In another specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with an SMN probe described below (e.g., SEQ ID NO. 3 or 10) along with applicable components, e.g., of an RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR), rolling circle amplification and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001072] In another specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and SMN2 genes, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with an SMN probe described below (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g., an RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR), rolling circle amplification
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2017204248 22 Jun 2017 and, as applicable, Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and SMN2 genes.
[001073] The amount of mRNA that is transcribed from the human SMN1 and SMN2 genes that includes exon 7 of SMN1 and SMN2 and the amount of mRNA that is transcribed from the human SMN1 and SMN2 genes and does not include exon 7 of SMN 1 and SMN2 can be differentiated from each other by, e.g., size of the RNA or DNA fragment generated from SMN1 and SMN2 mRNA that includes exon 7 of SMN 1 and SMN2 and from SMN1 and SMN2 mRNA that do not include exon 7 of SMN1 and SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001074] In another specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with an SMN probe described below (e.g., SEQ ID NO. 10) along with applicable components for, e.g., an RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR), rolling circle amplification, or Northern blot or Southern blot; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001075] In a specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1,7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for e.g., an RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is
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2017204248 22 Jun 2017 from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient. [001076] In a specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN 1 and SMN2 genes, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe described herein (e.g., SEQ ID NO. 3 or 10) along with applicable components for e.g., an RT-PCR (e.g, endpoint RT-PCR and/or RTqPCR), PCR (e.g., qPCR) or rolling circle amplification, as applicable; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and SMN2 genes. In a specific embodiment, the patient is an SMA patient.
[001077] The amount of mRNA that is transcribed from the human SMN1 and SMN2 genes that includes exon 7 of SMN 1 and SMN2 and the amount of mRNA that is transcribed from the human SMN1 and SMN2 genes that do not include exon 7 of SMN1 and SMN2 can be differentiated from each other by, e.g., size of the RNA or DNA fragment generated from SMN1 and SMN2 mRNA that includes exon 7 of SMN1 and SMN2 and from SMN1 and SMN2 mRNA that does not include exon 7 of SMN1 and SMN2. In certain embodiments, the sample is from or derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient. [001078] In a specific embodiment, provided herein is a method for detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, comprising: (a) contacting a patient sample (e.g., blood sample or tissue sample) or a sample derived from a patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 8) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe described herein (e.g., SEQ ID NO. 10) along with applicable components for e.g., an RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2. In certain embodiments, the sample is from or
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2017204248 22 Jun 2017 derived from a patient administered a compound, such as a compound of Formula (I) or a form thereof as described herein. In a specific embodiment, the patient is an SMA patient.
[001079] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMApatient administered a compound (e.g., a compound described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001080] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient
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2017204248 22 Jun 2017 with a forward SMN primer described below (e.g., SEQ ID NO. 1,7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001081] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 3 or 10) along with applicable components for e.g., RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl
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2017204248 22 Jun 2017 and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001082] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 1,7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 3 or 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of
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2017204248 22 Jun 2017 therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or oftherapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001083] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound ofFormula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of
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2017204248 22 Jun 2017 tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001084] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after
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2017204248 22 Jun 2017 administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001085] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. Tn certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001086] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient;
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2017204248 22 Jun 2017 (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RTqPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient, fn certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (!) or a form thereof as described herein.
[001087] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as
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2017204248 22 Jun 2017 described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration ofthe compound, indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. Tn certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001088] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient;
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2017204248 22 Jun 2017 (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR (e.g, endpoint RT-PCR and/or RT-qPCR), PCR (e.g, qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months,
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2017204248 22 Jun 2017 months, 12 months or more after administration of a compound, such as a compound of Formula (1) or a form thereof as described herein.
[001089] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein): and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an
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2017204248 22 Jun 2017 analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001090] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient;
(b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 andzor SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is
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2017204248 22 Jun 2017 transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001091] In a specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR) or PCR (e.g., qPCR), wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 and the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is responsive to the compound and
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2017204248 22 Jun 2017 that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001092] In another specific embodiment, provided herein is a method for assessing an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does
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2017204248 22 Jun 2017 not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound, indicate that the SMN1 and/or patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is assessed 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound ofFormula (I) or a form thereof as described herein.
[001093] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for e.g., RT-PCR(e.g., endpoint RTPCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound ofFormula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2,
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2017204248 22 Jun 2017 wherein (1) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001094] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable
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2017204248 22 Jun 2017 components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1 -5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001095] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) contacting an SMA patient sample (e.g.,
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2017204248 22 Jun 2017 blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 3 or 10) along with applicable components for e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1 5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound
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2017204248 22 Jun 2017 of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001096] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 1, 7, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 3 or 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RTPCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2, wherein (1) an increase in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7,
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2017204248 22 Jun 2017
8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (1) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 3040, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001097] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value
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2017204248 22 Jun 2017 to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1,2, 3,4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,21,22, 23,24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 1015, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001098] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include
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2017204248 22 Jun 2017 exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 3040, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored continuous administration of a compound over a period of days, weeks, months or years, such as a compound of Formula (I) or a form thereof as described herein.
[001099] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g, a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below' (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from a patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration ofthe
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2017204248 22 Jun 2017 compound or a certain number of do.se.s of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001100] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s responsiveness to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 8, 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1) a decrease in the amount of mRNA that is transcribed from the
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2017204248 22 Jun 2017
SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2) no change or no substantial change in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to the administration of the compound or a certain number of doses of the compound, or a certain earlier date indicates that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1,2, 3,4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,21,22, 23,24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 1015, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001101] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9
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2017204248 22 Jun 2017 or 12) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RTqPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain
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2017204248 22 Jun 2017 embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound ofFormula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound ofFormula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound ofFormula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound ofFormula (I) or a form thereof as described herein.
[001102] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR), or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the
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2017204248 22 Jun 2017 compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (1) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1,2,3,4,5,6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (1) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (1) or a form thereof as described herein.
[001103] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with an SMN probe (e.g., SEQ ID NO. 10)
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2017204248 22 Jun 2017 along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (1 )(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of S SMN1 and/or MN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain
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2017204248 22 Jun 2017 embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001104] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient;
(b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with an SMN probe (e.g., SEQ ID NO. 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 and the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN 1 and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound
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2017204248 22 Jun 2017 and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(1) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration ofthe compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 10-15, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001105] In a specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) contacting an SMA patient sample (e.g., blood sample or tissue sample) or a sample derived from an SMA patient (e.g., a blood sample or tissue sample that has been processed to extract RNA) with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9
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2017204248 22 Jun 2017 or 12) and/or an SMN probe (SEQ ID NO. 10) along with applicable components for, e.g., RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification, wherein the sample is from or derived from an SMA patient administered a compound (e.g., a compound of Formula (I) or a form thereof as described herein); and (b) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and docs not include exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic
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2017204248 22 Jun 2017 value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1,2, 3,4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,20,21,22,23, 24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1-5, 5-10, 1015, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001106] In another specific embodiment, provided herein is a method for monitoring an SMA patient’s response to a compound, comprising: (a) administering a compound to an SMA patient; (b) contacting a sample (e.g., blood sample or tissue sample) obtained or derived from the patient with a forward SMN primer described below (e.g., SEQ ID NO. 11 or 13) and/or a reverse SMN primer described herein (e.g., SEQ ID NO. 9 or 12) and/or an SMN probe (SEQ ID NO. 10) along with applicable components for, e.g., RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification; and (c) detecting the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2, wherein (l)(i) an increase in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) a decrease in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in an
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2017204248 22 Jun 2017 analogous sample (e.g., from the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is responsive to the compound and that the compound may be or is beneficial and/or of therapeutic value to the patient; and (2)(i) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 of SMN1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, and (ii) no change or no substantial change in the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1 and/or SMN2 in the patient sample relative to the amount of mRNA that is transcribed from the SMN2 gene and does not include exon 7 of SMN 1 and/or SMN2 in an analogous sample (e.g., the same type of tissue sample) from the patient prior to administration of the compound or a certain number of doses of the compound, or a certain earlier date, indicate that the patient is not responsive to the compound and that the compound is not beneficial and/or of therapeutic value to the patient. In certain embodiments, the patient’s response is monitored 1 hour, 2 hours, 4 hours, 8 hours, 12 hours, 16 hours, 20 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 7 days, 14 days, 28 days, 1 month, 2 months, 3 months, 6 months, 9 months, 12 months or more after administration of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the patient has received 1,2, 3,4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,21,22, 23,24, 25 or more doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored after the administration of 1 -5, 5-10, ΙΟΙ 5, 15-20, 20-30, 30-40, 40-50, or 50-100 doses of a compound, such as a compound of Formula (I) or a form thereof as described herein. In some embodiments, the patient’s response is monitored over a period of days, weeks, months or years during or after the continuous administration of a compound, such as a compound of Formula (I) or a form thereof as described herein.
[001107] In specific embodiments, SMA in a patient is caused by an inactivating mutation or deletion in the SMN1 gene on both chromosomes, resulting in a loss of SMN1 gene function.
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KITS [001108] In one aspect, provided herein are pharmaceutical or assay kits comprising an SMN primer or probe described herein, in one or more containers, and instructions for use. In one embodiment, a pharmaceutical or assay kit comprises, in a container, one or more SMN reverse primers (e.g., SEQ ID NO. 2, 9 and/or 12) and/or one or more SMN forward primers (SEQ ID NO. 1, 7, 8, 11 and/or 13)) and instructions for use. In another embodiment, a pharmaceutical or assay kit comprises, in one container, an SMN reverse primer (e.g., SEQ ID NO. 2, 9 or 12), an SMN forward primer (SEQ ID NO. 1, 7, 8, 11 or 13)) and instructions for use.
[001109] In one embodiment, a pharmaceutical or assay kit comprises, in separate containers, one SMN reverse primer (e.g., SEQ ID NO. 2, 9 or 12) in one container, another SMN forward primer (e.g., SEQ ID NO. 1, 7, 8, 11 or 13)) in another container, and instructions for use. [001110] In certain embodiments, applicable components needed for a PCR (e.g., qPCR), RTPCR (e.g., endpoint RT-PCR and/or RT-qPCR) or rolling circle amplification, such as polymerase, deoxynucleoside triphosphates, etc., are included in such kits. In some embodiments, components needed for hybridization are included in such kits. A pharmaceutical or assay kit containing such primers can be used in PCR and RT-PCR to, e.g.,: (i) assess whether a therapeutic agent (e.g., a compound of Formula (I) or a form thereof) enhances inclusion of exon 7 of SMNl and/or SMN2 into mRNA that is transcribed from the SMNl and/or SMN2 gene, (ii) monitor the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and includes exon 7 of SMN 1 and/or SMN2 and the amount of mRNA that is transcribed from the SMNl and/or SMN2 gene and does not include exon 7 of SMNl and/or SMN2, and/or (iii) monitor a subject’s response to a therapeutic agent (e.g., a compound of Formula (I) or a form thereof). In other embodiments, the subject is a human subject. In other embodiments, the human subject is a human patient. In certain other embodiments, the human patient is a human SMA patient.
[001111] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the sequence found in SEQ ID NO. 1, in a container, and the reverse primer with the sequence found in SEQ ID NO. 2, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by a human SMNl minigene or human SMN2 minigene, such as described those described herein or in International
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Publication No. WO 2009/151546 or U.S. Patent Application Publication No. 2011/0086833, each of which is incorporated herein by reference in its entirety. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot. [001112] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 7, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001113] In another specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 8, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by the endogenous human SMN2 gene. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001114] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 7, in a container, the forward primer with the nucleotide sequence found in SEQ ID NO. 8, in another container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001115] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 11, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 12, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by
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2017204248 22 Jun 2017 endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001116] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 11, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001117] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 13, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 12, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001118] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 13, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001119] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 1, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 9, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
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2017204248 22 Jun 2017 [001120] In a specific embodiment, a pharmaceutical or assay kit comprises the forward primer with the nucleotide sequence found in SEQ ID NO. 1, in a container, and the reverse primer with the nucleotide sequence found in SEQ ID NO. 12, in another container. In certain embodiments, these primers are used in RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR), PCR (e.g., qPCR) or rolling circle amplification for amplifying nucleotide sequences encoded by endogenous human SMN1 and SMN2 genes. In other embodiments, these primers are used as probes in, e.g., hybridization assays, such as Southern blot or Northern blot.
[001121] In another embodiment, a pharmaceutical or assay kit comprises an SMN probe described herein (e.g., SEQ ID NO. 3 or 10), in one container. In other embodiments, the probe is used in, e.g., a hybridization assay, such as a Southern blot or Northern blot. In a specific embodiment, the probe is used in RT-qPCR or qPCR. In certain embodiments, components needed for a PCR (e.g., qPCR), RT-PCR (e.g., endpoint RT-PCR and/or RT-qPCR) or rolling circle amplification, such as polymerase, deoxynucleoside triphosphates, primers, etc., are included in such kits. In some embodiments, components needed for hybridization are included in such kits.
[001122] In one embodiment, a pharmaceutical or assay kit comprises an SMN reverse primer (e.g., SEQ ID NO. 2, 9 or 12) in one container, an SMN forward primer (e.g., SEQ ID NO. 1, 7, 8, 11 or 13) in another container, and an SMN probe (e.g., SEQ ID NO. 3 or 10) in another container, and instructions for use. In another embodiment, a pharmaceutical or assay kit comprises one or more SMN reverse primers (e.g., SEQ ID NO. 2, 9 and/or 12) in one container, one or more SMN forward primers (e.g., SEQ ID NO. 1, 7, 8, 11 and/or 13) in another container, and one or more SMN probe (e.g., SEQ ID NO. 3 and/or 10) in another container, and instructions for use.
[001123] In certain embodiments, components needed to run a PCR, RT-PCR or rolling circle amplification, such as polymerase, deoxynucleoside triphosphates, etc., are included in such kits. A pharmaceutical or assay kit containing such probes and/or primers can be used in PCR and RT-PCR to, e.g.,: (i) assess whether a therapeutic agent (e.g, a compound of Formula (I) or a form thereof) enhances inclusion of exon 7 of SMN1 and/or SMN2 into mRNA that is transcribed from the SMN1 and/or SMN2 gene, (ii) monitor the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and includes exon 7 and the amount of mRNA that is transcribed from the SMN1 and/or SMN2 gene and does not include exon 7 of SMN1
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2017204248 22 Jun 2017 and/or SMN2, and/or (Hi) monitor a subject’s response to a therapeutic agent (e.g., a compound of Formula (1) or a form thereof). In other embodiments, the subject is a human subject. In other embodiments, the human subject is a human patient. In certain other embodiments, the human patient is a human SMA patient.
[001124] In another aspect, provided herein is a pharmaceutical kit comprising a compound of Formula (I) or a form thereof, in a container, and instructions for use of the compound or form thereof. In a specific embodiment, provided herein is a pharmaceutical kit comprising a pharmaceutical composition comprising a compound of Formula (I) or a form thereof and a pharmaceutically acceptable carrier, excipient or diluent, and instructions for use. In another specific embodiment, provided herein is a pharmaceutical kit comprising a pharmaceutical composition comprising an effective amount of a compound of Formula (I) or a form thereof and a pharmaceutically acceptable carrier, excipient or diluent, and instructions for use. In one embodiment, the instructions for use explain one, two or more of the following: the dose, route of administration, frequency of administration and side effects of administration of a compound of Formula (I) or a form thereof to a subject. In other embodiments, the subject is a human subject. In other embodiments, the human subject is a human patient. In certain other embodiments, the human patient is a human SMA patient.
[001125] As disclosed herein, general methods for preparing the compounds of Formula (I) or a form thereof as described herein are available via standard, well-known synthetic methodology. Many of the starting materials are commercially available or, when not available, can be prepared using the routes described below using techniques known to those skilled in the art. The synthetic schemes provided herein comprise multiple reaction steps, each of which is intended to stand on its own and can be carried out with or without any preceding or succeeding step(s). In other words, each of the individual reaction steps of the synthetic schemes provided herein in isolation is contemplated.
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GENERAL SYNTHETIC METHODS [001126] Scheme A [001127] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic aryl, heterocyclyl or hctcroaryl ring system, may be prepared as described in Scheme A below.
Figure AU2017204248B2_D0545
[001128] Methyl ketone Compound Al is reacted with dialkyl carbonate Compound Ala (where Rx is Cj^alkyl and the like) in the presence of a base (such as NaH and the like) in a suitable solvent (such as THF and the like) to provide Compound A3. Alternatively, ester Compound A2 is reacted with acetic acid ester Compound A2a (where Ry is Cj^alkyl and the like) in the presence of a base (such as LDA and the like) in a suitable solvent (such as THF and the like) to provide Compound A3. Compound A3 is further reacted in the presence of an alcohol (such as MeOH and the like) and an acid catalyst (such as p-TsOH and the like) to provide acetal Compound A4 (where Rz is Ci^alkyl and the like). Either Compound A3 or Compound A4 is reacted with Compound A5 (where X represents various reactive groups, which may be used to provide a plurality of Ri functional group substituents by reacting suitable starting materials with Compound A5 or Compound A6 using techniques known to a person of ordinary skill in the art) in the presence of an acid (such as PPA, p-TsOH and the like) and a suitable solvent (such as DMA and the like) to afford Compound A6.
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2017204248 22 Jun 2017 [001129] Scheme B [001130] Compounds of Formula (1), wherein R2 is a monocyclic or bicyclic heterocyclyl or heteroaryl ring system, may be prepared as described in Scheme B below.
Figure AU2017204248B2_D0546
[001131] Compound Bl is reacted with Compound B2, an optionally substituted heterocyclyl or heteroaryl ring system (wherein the term “Het” refers to an amidine-like moiety such as, but not limited to, 2-aminopyridine, 2-aminopyrimidine, 2-aminopyrazine, 3-aminopyridazine, 2aminothiazole, 4-aminothiazole, 4-aminopyrimidine and the like), in a suitable solvent (such as MeOH and the like) to provide Compound B3. Compound B3 is reacted with acetic acid ester Compound A2a (where Ry is Ci 4 alky I and the like) in the presence of a base (such as LDA and the like) in a suitable solvent (such as THF and the like) to afford Compound B4. Compound B4 is reacted with Compound A5 in the presence of an acid (such as PPA, p-TsOH and the like) and a suitable solvent (such as DMA and the like) to afford Compound B5.
[001132] Scheme C [001133] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic heteroaryl ring system, may be prepared as described in Scheme C below.
Figure AU2017204248B2_D0547
Figure AU2017204248B2_D0548
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Figure AU2017204248B2_D0549
[001134] A 2,4-diester pyrazole Compound Cl is reacted with an α-chloro ketone Compound C2 in the presence of a base (such as K2CO3 and the like) and a suitable solvent (such as acetone and the like) to afford Compound C3. Compound C3 is treated with ammonium acetate in a suitable solvent (such as AcOH and the like) to provide Compound C4. Compound C4 is treated with a chlorinating reagent (such as POCI3 and the like) to provide Compound C5. Compound C5 is reacted with an alkyl boronic acid (where Z is B(OH)2 and Rz is Ci^alkyl and the like) or an alkyl boronic acid ester (where Z is B2(pin)2 also referred to as bis(pinacolato)diboron and Rz is Ci^alkyl and the like) in the presence of a catalyst (such as Pd(dppf)C12 and the like) and a base (such as K2CO3 and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to give Compound C6. Compound C6 is reacted with acetic acid ester Compound A2a (where Ry is Ci^alkyl and the like) in the presence of a base (such as LDA and the like) in a suitable solvent (such as THF and the like) to afford Compound C7. Compound C7 is reacted with Compound A5 in the presence of an acid (such as p-TsOH, PPTs and the like) and a suitable solvent to afford Compound C8.
[001135] Scheme D [001136] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic aryl or heteroaryl ring system, may be prepared as described in Scheme D below.
Figure AU2017204248B2_D0550
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Figure AU2017204248B2_D0551
Figure AU2017204248B2_D0552
[001137] Compound A5 is reacted with malonic ester Compound DI (where Rw is Ci^alkyl, 2,4,6-trichlorophenyl and the like) to afford Compound D2. Compound D2 is treated with a chlorinating reagent (such as POCI3 and the like) to provide Compound D3. Compound D3 is reacted with an R2 substituted alkyl boronic acid (where Z is B(OH)2) or an alkyl boronic acid ester (where Z is B2(pin)2), wherein R2 is aryl or hctcroaryl, in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as KLCO, and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to give Compound A6.
[001138] Scheme E [001139] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic heteroaryl ring system, may be prepared as described in Scheme E below.
Figure AU2017204248B2_D0553
[001140] Compound El is reacted with Compound D3 in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as K2CO3 and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to give Compound E2. Compound E2 is reacted with Compound C2 in a suitable solvent (such as DMSO and the like) to afford Compound E3.
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2017204248 22 Jun 2017 [001141] Scheme F [001142] Compounds of Formula (1), wherein R2 is a monocyclic or bicyclic heteroaryl ring system, may be prepared as described in Scheme F below.
Figure AU2017204248B2_D0554
Figure AU2017204248B2_D0555
Figure AU2017204248B2_D0556
Figure AU2017204248B2_D0557
[001143] An optionally substituted 2-aminopyridine Compound Fl is reacted with a brominating reagent (such as Br2 and NBS and the like) to provide Compound F2. Compound F2 is reacted with Compound C2 in a suitable solvent (such as DMSO and the like) to afford Compound F3. Compound F3 is reacted with Compound F3a in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as KOAc and the like) in a suitable solvent (such as acetonitrile and the like) to provide Compound F4. Compound F4 is reacted with Compound D3 in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as K2CC>3 and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to give Compound F5.
[001144] Scheme G [001145] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic heteroaryl ring system, may be prepared as described in Scheme G below.
Figure AU2017204248B2_D0558
[001146] An optionally substituted azole Compound G1 (wherein the term “Het” refers to the azole ring system optionally further containing one, two or three additional nitrogen ring members where allowed by available valences) is reacted with Compound D3 in a suitable solvent (such as DMSO and the like) to provide Compound G2.
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2017204248 22 Jun 2017 [001147] Scheme H [001148] Compounds of Formula (1), wherein R2 is a monocyclic or bicyclic aryl, heterocyclyl or heteroaryl ring system, may be prepared as described in Scheme H below.
Figure AU2017204248B2_D0559
Figure AU2017204248B2_D0560
[001149] Compound Hl (where R2 is a monocyclic or bicyclic aryl, heterocyclyl or heteroaryl ring system) is reacted with Bredereck’s reagent Compound H2 (or DMF-DMA and the like) to form Compound H3. Compound H3 is reacted with Compound H4 (where X represents various reactive groups, which may be used to provide a plurality of Ri functional group substituents by reacting suitable starting materials with Compound H4 or Compound H5 using techniques known to a person of ordinary skill in the art) to provide Compound H5.
[001150] Scheme I [001151] Compounds of Formula (I), wherein R2 is a monocyclic or bicyclic aryl or heteroaryl ring system, may be prepared as described in Scheme I below.
Figure AU2017204248B2_D0561
[001152] Compound D3 (where X is bromo and the like) is reacted with an R2 substituted alkyl boronic acid (where Z is B(OH)2) or an alkyl boronic acid ester (where Z is B2(pin)2), wherein R2 is a monocyclic or bicyclic aryl or heteroaryl ring system and the like, in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as K2CO3 and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to provide Compound II.
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Compound II is reacted with Ri-H (wherein Ri contains a nucleophilic amino or hydroxyl group and the like) in a suitable solvent (such as DMSO and the like) to provide Compound 13.
[001153] Compound II may also be reacted with an Ri substituted alkyl boronic acid (where Z is B(OH)2) or an alkyl boronic acid ester (where Z is B2(pin)2) in the presence of a palladium catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as K2CO3 and the like) in a suitable solvent (such as DMF and the like) undergoing Suzuki coupling to provide Compound 13.
[001154] Alternatively, Compound D3 (where X is bromo and the like) may be reacted with Ri-H (wherein Ri contains a nucleophilic amino or hydroxyl group and the like) in a suitable solvent (such as DMSO and the like) to provide Compound 12. Compound 12 is reacted with an R2 substituted alkyl boronic acid (where Z is B(OH)2) or an alkyl boronic acid ester (where Z is B2(pin)2) in the presence of a catalyst (such as Pd(dppf)Cl2 and the like) and a base (such as K7CO3 and the like) in a suitable solvent (such as DMF and the like), undergoing Suzuki cross coupling to give Compound 13.
[001155] Scheme J [001156] Compounds ofFormula (I), wherein R2 is a monocyclic or bicyclic aryl, heterocyclyl or heteroaryl ring system, may be prepared as described in Scheme J below.
Figure AU2017204248B2_D0562
Figure AU2017204248B2_D0563
Figure AU2017204248B2_D0564
[001157] Compound JI (where R2 is a monocyclic or bicyclic aryl, heterocyclyl or hctcroaryl ring system) is reacted with malonic ester Compound DI in the presence of a base (such as TEA or DIEA and the like), a Lewis acid (such as MgCl2 and the like) and a suitable solvent (such as ACN and the like) to provide Compound J2. Compound J2 is treated with a chlorinating reagent (such as POCI3 and the like) in the presence of a base (such as Hunig's base and the like) to provide Compound J3.
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2017204248 22 Jun 2017 [001158] Compound J3 is reacted with Compound J4 (where X represents various reactive groups, which may be used to provide a plurality of Ri functional group substituents by reacting suitable starting materials with Compound J4, Compound J5 or Compound J6 using techniques known to a person of ordinary skill in the art) in the presence of a base (such as NaH and the like) and a suitable solvent (such as DMF and the like) to afford Compound J5. The carboxylic ester groups of Compound J5 may be hydrolyzed and decarboxylated under acidic conditions (such as TFA and the like) in a suitable solvent (such as waler and the like) to give Compound J6.
Figure AU2017204248B2_D0565
[001159] Compound J7 (where X represents various reactive groups, which may be used to provide a plurality of Ri functional group substituents by reacting suitable starting materials with Compound J7, Compound J8 or Compound J4 using techniques known to a person of ordinary skill in the art) is reacted with malonic diester Compound DI the presence of a base (such as CS2CO3 and the like), a metal catalyst (such as Cui and the like) and a ligand (such as 2-nicotinic acid and the like) in the presence of a suitable solvent (such as 1,4-dioxane and the like) to afford the diester Compound J8. The carboxylic ester groups of Compound J8 may be hydrolyzed using a base (such as NaOH and the like) in a suitable solvent system (such as MeOH and water and the like), then decarboxylated and acidified using an acid (such as HC1 and the like) in a suitable solvent (such as water and the like) to give Compound J4.
SPECIFIC SYNTHETIC EXAMPLES [001160] To describe in more detail and assist in understanding, the following non-limiting examples are offered to more fully illustrate the scope of compounds described herein and are not to be construed as specifically limiting the scope thereof. Such variations of the compounds described herein that may be now known or later developed, which would be within the purview of one skilled in the art to ascertain, are considered to fall within the scope of the compounds as described herein and hereinafter claimed. These examples illustrate the preparation of certain compounds. Those of skill in the art will understand that the techniques described in these examples represent techniques, as described by those of ordinary skill in the art, that function
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2017204248 22 Jun 2017 well in synthetic practice, and as such constitute preferred modes for the practice thereof. However, it should be appreciated that those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific methods that are disclosed and still obtain a like or similar result without departing from the spirit and scope of the present description.
[001161] Other than in the following examples of the embodied compounds, unless indicated to the contrary, all numbers expressing quantities of ingredients, reaction conditions, experimental data, and so forth used in the specification and claims are to be understood as being modified by the term “about”. Accordingly, all such numbers represent approximations that may vary depending upon the desired properties sought to be obtained by a reaction or as a result of variable experimental conditions. Therefore, within an expected range of experimental reproduc ibility, the term “about” in the context of the resulting data, refers to a range for data provided that may vary according to a standard deviation from the mean. As well, for experimental results provided, the resulting data may be rounded up or down to present data consistently, without loss of significant figures. At the very least, and not as an attempt to limit the application of the doctrine of equivalents to the scope of the claims, each numerical parameter should be construed in light of the number of significant digits and rounding techniques used by those of skill in the art.
[001162] While the numerical ranges and parameters setting forth the broad scope of the present description are approximations, the numerical values set forth in the examples set forth below are reported as precisely as possible. Any numerical value, however, inherently contains certain errors necessarily resulting from the standard deviation found in their respective testing measurements.
COMPOUND EXAMPLES [001163] As used above, and throughout the present description, the following abbreviations, unless otherwise indicated, shall be understood to have the following meanings:
Abbreviation
Meaning
Δ
AcOH or HOAc
Ac2O
Ar heating (chemistry) or deletion (biology) acetic acid acetic anhydride argon
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Abbreviation
AGN
Bl NAP
BfOiPr):
Boe
BociO
BuOH °C
GDI (CHO)n or (HCHO)» d/h/hr/hrs/min/s
DavePhos
DCE
DCM
DI AD
DIEA or DIPEA
DMA
DMAP
DME
DM I
DMSO
EDC or EDCI
EtOAc
EtOH
Ei-O neon iPrl
JohnPhos
KOAc
LAN
LC/MS, LCMS or LC-MS
LDA
LiHMDS or LIIMDS
MeOH
Meaning acetonitrile
2.2'-bis(diphenylphosphino)-1,1 '-binaphthalcne triisopropyl borate tert-butoxy-carbonyl di-tert-butyi dicarbonaie «-butanol degrees Centigrade
1.1- earbonyldiimidazole or N-N’-carhonyidiinudazoIe paraformaldehyde day(d)/hour(h, hr or hrs)/minute(min)/'second(s) 2-dicyc1ohexylphosphino-2’-(N,Ndimethylaminolbiphcnyl
L2-dichloroethane d ich io rometha nc (C Η 2Cl2) di isopropyl azod icarboxylate
N,N-diisopropylethylamine dimethylaeetamide
4-(dimethylamino)pyridine
1.2- dimcthoxycthanc dimethylformamide dimethylsulfoxide /V-(3-dimethylaminopropyl)-A'-ethylcarbodiiinide hydrochloride ethyl acetate ethanol diethyl ether formaldehyde iodopropanc (2-biphcnyl)-di-t-butylphosphine potassium acetate lithium aluminum hydride liquid chromatographic mass spectroscopy
I i l h ium d i i sopro pylam i ne lithium bis( trimethyIs ilv I )aniide methanol
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Abbreviation Meaning
Mel io do methane
Me-THF 2-methyltetrahydro furan
Me2Zn dimethylzinc
MnO2 manganese dioxide
MS mass spectroscopy
NaH sodium hydride
NaHS sodium hydrosulfide
NaHMDS sodium bis(trimethylsilyl)amide or sodium hexamethyldisilazide
Nal sodium iodide
NaOAc sodium acetate
NaOMe sodium methoxide
NBS N-bromosuccinimide
NMP N-methylpyrrolidone
NMR nuclear magnetic resonance
o/n overnight
Pd palladium
Pd/C palladium on carbon
Pd(dba)2 bis(dibenzylideneacetone)palladium
Pd2(dba)3 or Pd2dba3 tris(dibenzylideneacetone)dipalladium(0)
PdCl2(PhCN)2 trans-bis(benzonitrile)dichloropalladium(II)
PdCl2(dppf), PdCl2dppf or Pd(dppf)Cl2 bis(diphenylphosphino)ferrocene]dichloropalladium(II)
Pd(OAc)2 palladium(II) acetate
Pd(PPh3)4 or Pd(Ph3P)4 tctrakis(triphcnylphosphinc)palladium(0)
Pd(PPh3)2Cl2, PdCl2(PPh3)2 or PdCl2(Ph3P)2 bis(triphenylphosphine)palladium(II) dichloride
PHBu3BF4 or tBu3PHBF4 tri-tert-butylphosphonium tetrafluoroborate
Phi iodobenzene
PhI(OTFA)2 [bis(trifluoroacetoxy)iodo]benzene
PhMe toluene
Ph-NTf2 or PhNTf2 N-phenyl triflimide, also referred to as N-phenylbis( trifluoromethanesulfo nimide)
POC13 phosphoryl chloride
PPh3 triphenylphosphine
PPA polyphosphoric acid
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Abbreviation Meaning
PPTs Psi PyBOP pyridinium p-tolucncsulfonatc pounds per square inch pressure (benzotriazol-1 -yloxy)tripyrrolidinophosphonium hexafluorophosphate
rt S-Phos, SPhos or Sphos T3P TEA, Et3N or NEt3 Tf2O TFA THF TLC TMS TMSC1 TMSOK t-Bu TsOH, p-TsOH or /?TSA xantphos room temperature 2-dicyclohexylphosphino-2',6'-dimethoxybiphenyl propylphosphonic anhydride triethylamine triflic anhydride trifluoroacetic acid tetrahydrofuran thin layer chromatography trimethylsilane trimethylchlorosilane or trimethylsilyl chloride potassium trimethylsilanolate tert-butyl tosylic acid or /2-lolucncsulfonic acid 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene
[001164] Example 1 [001165] Preparation of Cpd 72
Figure AU2017204248B2_D0566
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2017204248 22 Jun 2017 [001166] Step A: 3'-Fluoro-4'-methoxyacetophenone (336 mg, 2 mmol) was dissolved in THF (4 mL). To the solution was added dimethyl carbonate (0.42 mL, 5 mmol) and sodium hydride (200 mg, 5 mmol, 60% dispersion in mineral oil) sequentially. The mixture was heated to 60 °C for 30 minutes. After cooling the mixture to 0 °C, the remaining sodium hydride was quenched with IN aqueous HC1 (20 mL). The mixture was extracted with EtOAc (20 mL). The organic layer was washed with brine, dried over Na2SC>4, filtered and concentrated. The residue was eluted from silica gel with EtOAc (25%) in hexanes, affording methyl 3-(3-fluoro-4methoxyphenyl)-3-oxopropanoate as a pale yellow oil (405 mg, 89%). MS m/z 227.2 [M+H]+; *H NMR (CDC13, 500 MHz): δ 7.76 (1H, dd, J = 8.6 Hz, 2.1 Hz), 7.72 (1H, dd, J = 11.7 Hz, 2.2 Hz), 7.04 (1H, t, J = 8.4 Hz), 3.99 (3H, s), 3.97 (2H, s), 3.78 (3H, s).
[001167] Step B: methyl 3-(3-fluoro-4-methoxyphenyl)-3-oxopropanoate (405 mg, 1.8 mmol) was dissolved in methanol (1 mL). p-Toluenesulfonic acid monohydrate (17 mg, 0.09 mmol) was added to the solution, followed by trimethylorthoformate (0.30 mL, 2.7 mmol). The solution was stirred at 60 °C for 1 hour. Volatiles were removed with a stream of nitrogen providing crude methyl 3-(3-fluoro-4-methoxyphenyl)-3,3-dimethoxypropanoate. *H NMR (DMSO-i/6, 500 MHz): δ 7.18-7.15 (3H, m), 3.85 (3H, s), 3.38 (3H, s), 3.10 (6H, s), 2.98 (2H, s). [001168] Step C: To the crude material (1.8 mmol) from Step B was added 5-fluoropyridin-2amine (213 mg, 1.9 mmol). The mixture was heated neat to 160 °C for 1 hour to provide 7fluoro-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (475 mg, 92%). MS m/z 289.2 [M+H]+; *HNMR (CDCI3, 500 MHz): δ 8.99 (1H, m), 7.92 (1H, dd, J = 12.5 Hz, 2.2 Hz), 7.90 (1H, d, 8.5 Hz), 7.88 (1H, m), 7.73 (1H, m), 7.10 (1H, t, J = 8.5 Hz), 6.85 (1H, s), 3.99 (3H, s).
[001169] Step D: 7-Fluoro-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (200 mg, 0.7 mmol) was combined with piperazine (430 mg, 3.5 mmol) in dimethylacetamide (0.5 mL). The mixture was stirred at 150 °C for 0.5 hours, then chromatographed on silica gel, eluting with 0% to 8% McOH (3% NH3) in CH2CI2. The title compound was obtained as a yellow powder (175 mg, 71%). M.P. 191-195 °C; MS m/z 355.0 [M+H]+; *H NMR (DMSO-<Z6, 500 MHz): δ 8.20 (1H, d, J = 2.7 Hz), 8.07-8.02 (3H, m), 7.67 (1H, d, J = 9.7 Hz), 7.28 (1H, t, J = 8.7 Hz), 6.93 (1H, s), 3.13 (4H, m), 2.90 (3H, s), 2.88 (4H, m), 2.34 (1H, br s).
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2017204248 22 Jun 2017 [001170] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 1 by substituting the appropriate starting materials, reagents and reaction conditions.
[001171] Example 2 [001172] Preparation of Cpd 239
Boc
Figure AU2017204248B2_D0567
[001173] Step A: A mixture of 7-bromo-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2a]pyrimidin-4-one (250 mg, 0.72 mmol), (R)-tert-butyl 3-(methylamino)pyrrolidine-lcarboxylate (180 mg, 0.90 mmol), Pd2dba3 (61 mg, 0.065 mmol), dicyclohexyl(2',6'dimethoxybiphenyl-2-yl)phosphine (SPhos, 78 mg, 0.19 mmol), CS2CO3 (500 mg, 1.53 mmol), and 1,2-dimethoxyethane (DME, 2.0 mL) were stirred under an argon atmosphere at 80° C for 18 hours. The reaction mixture was then diluted with CH2Cl2/MeOH (9:1) and was filtered to remove solids. The filtrate was concentrated under vacuum. Purification by silica gel chromatography (10% to 20% acetone in CH2C12), followed by an ether wash, yielded (R)-tertbutyl 3-((2-(3-fluoro-4-methoxyphenyl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7yl)(methyl)amino)pyrrolidine-l-carboxylate (132 mg, 39%) as a light tan solid. MS m/z 469.0 [M+H]+.
[001174] Step B: A solution of (R)-tcrt-butyl 3-((2-(3-fluoro-4-mcthoxyphcnyl)-4-oxo-4Hpyrido[l,2-a]pyrimidin-7-yl)(methyl)amino)pyrrolidine-l-carboxylate (130 mg, 0.28 mmol) in
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CH2C12 (2.0 mL) and TFA (500 pL) was stirred at room temperature for 30 minutes. The mixture was poured into IN NaOH solution (50 mL). The product was extracted into CH2Cl2/EtOH (9:1). The organic layer was concentrated under vacuum. Purification by silica gel chromatography (CH2Cl2/MeOH/NH4OH = 9/1/0.1) yielded (R)-2-(3-fluoro-4methoxyphenyl)-7-(methyl(pyrrolidin-3-yl)amino)-4H-pyrido[l,2-a]pyrimidin-4-one (82 mg, 79%) as a yellow solid. MS m/z 369.1 [M+H]+.
[001175] Step C: A mixture of (R)-2-(3-fluoro-4-methoxyphenyl)-7-(methyl(pyrrolidin-3yl)amino)-4H-pyrido[l,2-a]pyrimidin-4-one (45 mg, 0.12 mmol), DCE (500 pL), formaldehyde (37% w/w in H2O, 200 pL), and NaBH(OAc)3 (85 mg, 0.40 mmol) was stirred at room temperature for 15 minutes. The reaction mixture was added to an aqueous K2CC>3 solution, and the title product was extracted into CH2C12. The organic layer was concentrated under vacuum. Purification by silica gel chromatography (10% MeOH in CH2C12) yielded the title compound (39 mg, 85%) as an off-white solid. M.P. 143-149 °C; MS m/z 383.5 [M+H]+; *H NMR (500 MHz, DMSO-c4): δ 8.13 (d, 1H, J = 3 Hz), 8.0-8.1 (m, 3H),.7.69 (d, 1H, J = 10 Hz), 7.29 (t, 1H, J = 9.0 Hz), 6.90 (s, 1H), 4.58 (m, 1H), 3.92 (s, 3H), 2.93 (3H, s), 2.81 (m, 1H), 2.75 (m, 1H), 2.49 (m, 1H, obscured by DMSO-i4), 2.20 (m, 2H), 2.28 (s, 3H), 1.76 (m, 1H).
[001176] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 2 by substituting the appropriate starting materials, reagents and reaction conditions.
[001177] Example 3 [001178] Preparation of Cpd 6
Figure AU2017204248B2_D0568
DIEA DMSO 120 °C
Figure AU2017204248B2_D0569
2017204248 22 Jun 2017
Step A: A mixture of ethyl 3-(3,4-dimethoxyphenyl)-3-oxopropanoate (2.02 g, 8.0 mmol), 2amino-5-fluoropyridine (0.897 g, 8.0 mmol) and/>-TsOH (152 mg, 0.8 mmol) was heated at 150 °C. The mixture was melted and then solidified. After 1 hour, the mixture was cooled to room temperature and washed with MeCN to give 2-(3,4-dimethoxyphenyl)-7-fluoro-4Hpyrido[l,2-a]pyrimidin-4-one as a yellow solid (1.356 g, 56%). MS m/z 367.5 [M+H]+; *H NMR (500 MHz, DMSO-i/6): δ 8.92 (1H, dd, J= 2.9 Hz, 4.8 Hz), 8.11-8.07 (1H, m), 7.85-7.82 (1H, m),7.77 (1H, d, J= 2.1 Hz), 7.09 (1H, d, J= 8.6 Hz), 7.06 (1H, s), 6.93 (1H, s), 3.88 (3H, s), 3.84 (3H, s), [001179] Step B: A mixture of 2-(3,4-dimethoxyphenyl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin4-one (1.50 g, 5.0 mmol), piperazine (1.29 g, 15 mmol) and DIEA (1.3 mL, 7.5 mmol) in DMSO (10 mL) was heated at 120 °C. After 15 hours, the volatiles were removed and the residue was washed with MeCN to give the title compound as a yellow solid (1.674 g, 91%).
M.P. 182-184 °C; MS m/z 367.5 [M+H]+; 'HNMR (500 MHz, DMSOY6): δ 8.20 (1H, d, J = 2.7 Hz), 8.04 (1H, dd, J= 2.8 Hz, 9.8 Hz), 7.79 (1H, dd, J= 2.1 Hz, 8.5 Hz), 7.74 (1H, d, J = 2.1 Hz), 7.67 (1H, d, J= 9.7 Hz), 7.07 (1H, d, J= 8.5 Hz), 6.93 (1H, s), 3.87 (3H, s), 3.83 (3H, s), 3.12 (4H, m), 2.88 (4H, m).
[001180] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 3 by substituting the appropriate starting materials, reagents and reaction conditions.
[001181] Example 4 [001182] Preparation of Cpd 1
Figure AU2017204248B2_D0570
DIEA DMSO 120 °C
Figure AU2017204248B2_D0571
278
2017204248 22 Jun 2017 [001183] Step A: A mixture of ethyl 3-(3-methoxyphenyl)-3-oxopropanoate (2.68 mL, 14.0 mmol) and 2-amino-5-fluoropyridine (1.12 g, 10.0 mmol) in PPA (~5 g) was heated at 120 °C. After 0.5 hours, the dark purple mixture was cooled to room temperature and treated with icewater. The precipitate was filtered, washed with water and MeCN to give 2-(4-methoxyphenyl)7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one as a slightly yellow solid (1.758 g, 65%). MS m/z 271.2 [M+H]+.
[001184] Step B: Following the procedure in Example 3, Step B, 7-fluoro-2-(4methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (81 mg, 0.3 mmol) and piperazine (129 mg, 1.5 mmol) in DMSO (1 mL) gave the title compound as a yellow solid (66 mg, 66%). M.P. 182184 °C; MS m/z 337.3 [M+H]+; *H NMR (500 MHz, DMSOY6): δ 8.20 (1H, d, J= 2.6 Hz), 8.16 (2H, dd, J= 2.0 Hz, 7.0 Hz), 8.05 (1H, dd, J= 2.7 Hz, 9.7 Hz), 7.67 (1H, d, J= 9.7 Hz), 7.05 (2H, d, J= 1.9 Hz, 7.0 Hz), 6.86 (1H, s), 3.83 (3H, s), 3.12 (4H, m), 2.87 (4H, m).
[001185] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 4 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001186] Example 5 [001187] Preparation of Cpd 81 and Cpd 82
Figure AU2017204248B2_D0572
[001188] Step A: To a solution of 4-mcthoxy-3-(trifluoromcthoxy)bcnzaldchydc (1.0 g, 4.5 mmol) in acetone (30 mL) was added Jone’s reagent (5 mL). After stirring at room temperature for 15 hours, methanol (2 mL) was added and the mixture was filtered. The filtrate was concentrated, dissolved in EtOAc and washed with water. The organics were dried and concentrated to give 4-methoxy-3-(trifluoromethoxy)-benzoic acid as a white solid (1.02 g, 96%), MS m/z 235.2 [M-H]“.
[001189] Step B: To a solution of 4-methoxy-3-(trifluoromethoxy)benzoic acid (1.02 g, 4.32 mmol) in DCM (10 mL) was added oxalyl chloride (5 mL). After refluxing for 6 hours, the solution was concentrated to give 4-methoxy-3-(trifluoromethoxy)-benzoyl chloride. The crude acid chloride was dissolved in DCM (10 mL) and cooled to 0 °C. Diisopropylethylamine (1.56 mL, 9.0 mmol) and Ν,Ο-dimethylhydroxylamine (0.658 g, 6.7 mmol) were added. After stirring at room temperature for 2 hours, the mixture was washed with water. The organics were dried, concentrated and chromatographed (5% EtOAc in CH2CI2) to give 4-dimethoxy-N-methyl-3(trifluoromethoxy)benzamide as an amber oil (0.58 g, 48%).
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2017204248 22 Jun 2017 [001190] Step C: To a solution of 4-dimethoxy-N-methyl-3-(trifluoromethoxy)-benzamide (0.58 g, 2.08 mmol) in THF (8 mL) at 0 °C was added MeMgBr (3.0 M, 0.83 mL, 2.5 mmol). After stirring at room temperature for 15 hours, the solution was washed with water. The organics were dried and concentrated to give 1 l-(4-methoxy-3(trifluoromethoxy)phenyl)ethanone as a white solid (0.45 g, 96%).
[001191] Step D: To a solution of the crude l-(2-fhioro-4,5-dimethoxyphenyl)-ethanone (0.45 g, 2.0 mmol) and dimethyl carbonate (1.5 mL, 18.2 mmol) in THF (8 mL) at room temperature was added NaH (60%, 0.44 g, 10.9 mmol). After heating at 75 °C for 20 minutes, the mixture was quenched with NH4CI (satd.). The pH of the mixture was adjusted to neutral with IN HC1. The mixture was extracted with EtOAc. The organics were dried and concentrated to give methyl 3-(4-methoxy-3-(trifluoromethoxy)phenyl)-3-oxopropanoate. MS m/z 299.1 [M+H]+. The crude product was used directly in the next step.
[001192] Step E: A solution of the crude methyl 3 -(4-methoxy-3-(trifluoro metho xy)phenyl)-3oxopropanoate (2 mmol) from step D, p-TsOH (38 mg, 0.2 mmol) and trimethoxymethane in MeOH (4 mL) was heated at 60 UC. After 1 hour, the volatiles were removed and 2-amino-5fluoropyridine (0.224 g, 2.0 mmol) was added. The mixture was heated at 150 °C for 1 hour, cooled to room temperature and washed with MeCN to give 7-fluoro-2-(4-methoxy-3(trifluoromethoxy)phenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (146 mg, 21%). MS m/z 355.1 [M+H]+.
[001193] Step F: A mixture of 7-fluoro-2-(4-methoxy-3-(trifluoromethoxy)phenyl)-4Hpyrido[l,2-a]pyrimidin-4-one (71 mg, 0.2 mmol), piperazine (38 mg, 0.4 mmol) and diisopropylethylamine (69 uL, 0.4 mmol) in DMSO (0.5 mL) was heated at 120 °C. After 15 hours, the volatiles were removed and the residue was chromatographed (20% MeOH in DCM) to give two products:
[001194] Cpd81 (8 mg, 9%) was obtained as a yellow solid. M.P. 158-162 °C; MS m/z 421.1 [M+H]+; *H NMR (500 MHz, DMSO-ti6): δ 8.26 (1H, d, J= 2.6 Hz), 8.24 (1H, dd, J= 2.2 Hz, 8.8 Hz), 8.19 (1H, m), 8.08 (1H, dd, J= 2.8 Hz, 9.7 Hz), 7.75 (1H, d, J= 9.7 Hz), 7.37 (1H, d, J = 8.8 Hz), 6.99 (1H, s), 3.94 (3H, s), 3.07 (4H, m), 2.50 (4H, m, obscured by DMSO-fik; and, [001195] Cpd 82 (9 mg, 11%) was obtained as a yellow solid. M.P. 245-248 °C; MS m/z 407.2 [M+H]+; *H NMR (500 MHz, DMSO-d6): δ 8.21 (1H, d, J= 2.7 Hz), 8.11 (1H, m), 8.07-8.03
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2017204248 22 Jun 2017 (2H, m), 7.68 (1H, d, J = 9.7 Hz), 7.11 (1H, d, J= 8.6 Hz), 6.87 (1H, s), 3.14 (4H, m), 2.88 (4H, m).
[001196] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 5 by substituting the appropriate starting materials, reagents and reaction conditions.
[001197] Example 6 [001198] Preparation of Cpd 70
Figure AU2017204248B2_D0573
15h
NaOMe
MeOH °C
Figure AU2017204248B2_D0574
[001199] To a suspension of 2-(3,4-dimethoxyphenyl)-9-fluoro-7-(piperazin-l-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (38 mg, 0.1 mmol, prepared by following the procedures in Example 3, Steps A and B in MeOH (0.5 mL) was added NaOMe (0.5 M in MeOH, 1 mL, 0.5 mmol). After heating at 80 °C for 15 hours, the volatiles were removed and the residue was chromatographed (10-15% McOH/CTLCb) to give the title compound as a yellow solid (18 mg, 45%). M.P. 185-187 °C; MS m/z 397.3 [M+H]+; 'HNMR (500 MHz, DMSO-46): δ 8.20 (1H, d, J = 2.5 Hz), 7.80 (2H, m), 7.08 (1H, d, J= 9.0 Hz), 7.00 (1H, s), 6.97 (1H, d, J= 2.5 Hz), 3.89 (3H, s), 3.87 (3H, s), 3.83 (3H, s), 3.30 (4H, m), 2.98 (4H, m).
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2017204248 22 Jun 2017 [001200] Example 7 [001201] Preparation of Cpd 74
Figure AU2017204248B2_D0575
[001202] Step A: To a solution of 2-amino-5-methylpyrazine (1.09 g, 10 mmol) in DME (10 mL) was added ethyl 3-bromo-2-oxopropanoate (1.57 mL, 12.5 mmol). The mixture was stirred at room temperature for 45 minutes. The precipitate was filtered, washed with Et2O and dried to give a yellow solid. The solid was suspended in EtOH (20 mL) and heated at 90 °C. After 1.5 hours, the resulting brown solution was concentrated and adjusted to pH 7. The mixture was extracted with EtOAc. The organics were concentrated and the residue was triturated and washed with MeCN to give ethyl 6-methylimidazo[l,2-a]pyrazine-2-carboxylate as a brown solid (0.993 g, 48%). MS m/z 206.2 [M+H]+.
[001203] Step B: To a solution of ethyl 6-methylimidazo[l,2-a]pyrazine-2-carboxylate (0.971 g, 4.73 mmol) and EtOAc (0.98 mL, 10 mmol) in toluene (2 mL) and Me-THF (8 mL) at room temperature was added NaH (60%, 0.503 mg, 12.6 mmol). After heating at 70 °C for 30 minutes, the mixture was cooled to room temperature, quenched with ice, adjusted to pH 7 with IN HC1 and extracted with EtOAc. The organics were combined, dried, concentrated and chromatographed to give ethyl 3-(6-methylimidazo[l,2-a]pyrazin-2-yl)-3-oxopropanoate as a brownish oil (0.93 g, 78%).
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2017204248 22 Jun 2017 [001204] Step C: Following the procedure in Example 1 Step B, ethyl 3-(6-methylimidazo[l,2a]pyrazin-2-yl)-3-oxopropanoate (0.913 g, 3.7 mmol), p-toluenesulfonic acid monohydrate (70 mg, 0.37 mmol) and trimethylortho formate (0.81 mL, 7.4 mmol) in MeOH (10 mL) afforded the ketal which was used directly in the next step.
[001205] Step D: Following the procedure in Example 1 Step C, the crude dimethoxypropanoate (from Step C and 2-amino-5-fluoro-pyridine (0.422 g, 3.7 mmol) gave 7fluoro-2-(6-methylimidazo[l,2-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a brownish solid (0.344 g, 31%). MS m/z 295.9 [M+H]+; *H NMR (500 MHz, DMSO-</6): δ 9.09 (1H, s), 8.97-8.96 (1H, m), 8.67 (1H, s), 8.47 (1H, s), 8.15-8.11 (1H, m), 7.85-7.82 (1H, m), 7.08 (1H, s), 2.42 (3H, S).
[001206] Step E: Following the procedure in Example 3, Step B, 7-fluoro-2-(6methylimidazo[l,2-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (59 mg, 0.2 mmol) and piperazine (52 mg, 0.6 mmol) in DMSO (0.5 mL) gave the title compound as a yellow solid (28 mg, 39%). M.P. 221-225 °C; MS m/z 362.2 [M+H]+; 'H NMR (500 MHz, DMSO-<4): δ 9.07 (1H, s), 8.62 (1H, s), 8.46 (1H, s), 8.25 (1H, d, J= 2.6 Hz), 8.09 (1H, d, J= 2.7 Hz, 9.7 Hz), 7.67 (1H, d, J= 9.7 Hz), 7.00 (1H, s), 3.16 (4H, m), 2.90 (4H, m), 2.44 (3H, s).
[001207] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 7 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001208] Example 8 [001209] Preparation of Cpd 29
Figure AU2017204248B2_D0576
Figure AU2017204248B2_D0577
Figure AU2017204248B2_D0578
[001210] Step A: Following the procedure in Example 7, Step A, 2-amino-5-methylpyridine (5.41 g, 50 mmol) and ethyl 3-bromo-2-oxopropanoate (7.0 mL, 50 mmol) in MeOH (50 mL) gave ethyl 6-methylimidazo[l,2-a]pyridine-2-carboxylate as a yellowish solid (9.50 g, 93%), MS m/z 205.1 [M+H]+.
[001211] Step B: Following the procedure in Example 7, Step B, ethyl 6-methylimidazo[l,2a]pyridine-2-carboxylate (0.55 g, 2.5 mmol), EtOAc (0.29 mL, 5.0 mmol) and NaH (60%, 0.20 g, 5 mmol) in toluene (5 mL) gave ethyl 3-(6-methylimidazo[l,2-a]pyridin-2-yl)-3oxopropanoate as a yellow solid (0.62 g, 100%), MS m/z 243.1 [M+H]+.
[001212] Step C: Following the procedure in Example 4, Step A, ethyl 3-(6methylimidazo[l,2-a]pyridin-2-yl)-3-oxopropanoate (246 mg, 1.0 mmol) and 2-amino-5fluoropyridine (334 mg, 1.2 mmol) inPPA (~5 g) gave 7-fluoro-2-(6-methylimidazo[l,2a]pyridin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a yellow solid (17 mg, 6%), MS m/z 2952 [M+H]+.
[001213] Step D: Following the procedure in Example 3, Step B, 7-fluoro-2-(6methylimidazo[l,2-a]pyridin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (17 mg, 0.06 mmol) and piperazine (30 mg, 0.3 mmol) in DMSO (10 mL) gave the title compound as a light brown solid (19 mg, 83%). M.P. 193-198 °C; MS m/z 361.3 [M+H]+; *H NMR (500 MHz, DMSO-d6): δ 8.48 (1H, s), 8.41 (1H, s), 8.25 (1H, d, J= 2.6 Hz), 8.06 (1H, dd, J= 2.7 Hz, 9.7 Hz), 7.66 (1H,
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2017204248 22 Jun 2017 d, J = 9.7 Hz), 7.55 (1H, d, 9.3 Hz), 7.18 (1H, d, J= 9.3 Hz), 6.96 (1H, s), 3.23 (4H, m), 3.01 (4H, m), 2.29 (3H, s).
[001214] Example 9 [001215] Preparation of Cpd 170
Figure AU2017204248B2_D0579
Figure AU2017204248B2_D0580
[001216] Step A: To a solution of diethyl lH-pyrazole-3,5-dicarboxylate (10.0 g, 47 mmol) and chloroacetone (3.76 mL, 47 mmol) in acetone (200 mL) was added potassium carbonate (7.2 g, 52 mmol). Alter heating at 30 °C for 6 hours, the mixture was concentrated to remove the volatiles. The residue was taken into EtOAc and washed with water. The organics were dried over MgSCLand concentrated to give diethyl l-(2-oxopropyl)-lH-pyrazolc-3,5-dicarboxylatc as a light brown solid, which was used directly in the next step, MS m/z 269.1 [M+H]+.
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2017204248 22 Jun 2017 [001217] Step B: To a solution of diethyl l-(2-oxopropyl)-lH-pyrazole-3,5-dicarboxylate (~47 mmol) in acetic acid (300 mL) was added ammonium acetate (72 g, 940 mmol). After refluxing for 48 hours, the mixture was concentrated to minimum volume and diluted with water. The precipitate was filtered, washed with water and MeCN to give ethyl 4-hydroxy-6methylpyrazolo[l,5-a]pyrazine-2-carboxylate as a tan solid (6.7 g, 64%), MS m/z 222.1 [M+H]+. [001218] Step C: A mixture of ethyl 4-hydroxy-6-methylpyrazolo[l,5-a]pyrazine-2-carboxylate (7.18 g, 32.5 mmol) in POCL (80 mL) was refluxed for 15 hours. The dark mixture was concentrated and washed with MeCN to give ethyl 4-chloro-6-methylpyrazolo[l,5-a]pyrazine-2carboxylate (5.197 g) as an off-white solid. The filtrate was concentrated and chromatographed to give an additional 1.42 g product (6.617 g, 85%) MS m/z 240.1 [M+H]+, 242.1 [M+2+H]+. [001219] Step D: A mixture of ethyl 4-chloro-6-methylpyrazolo[l,5-a]pyrazine-2-carboxylate (5.197 g, 21.7 mmol), MeB(OH)2 (3.90 g, 65.1 mmol), K2CO3 (14.8 g, 107.5 mmol) and Pd(PPh3)2Cl2 in (456 mg, 0.65 mmol) DMF (100 mL) was degassed and heated under N2 for 15 hours. The mixture was concentrated on a rotovap to remove most of the DMF and washed with water. The residue was chromatographed (2% to 5% MeOH in CH2C12) to give ethyl 4,6dimethylpyrazolo[l,5-a]pyrazine-2-carboxylate as a yellow solid (3.90 g, 82%), MS m/z 220.1 [M+H]+; *H NMR (500 MHz, DMSO-</6): δ 8.54 (1H, s), 7.49 (1H, s), 4.36 (2H, q, J = 7.2 Hz), 2.70 (3H, s), 2.42 (3H, s), 1.34 (3H, t, J = 7.2Hz).
[001220] Step E: To a solution of t-butyl acetate (1.63 mL, 12.1 mmol) in THF (50 mL) at -78 °C was added LDA (1.5 M, 0.97 mL, 14.5 mmol). After 0.5 hours, the solution was cannulated to a solution of ethyl 4,6-dimethylpyrazolo[l,5-a]pyrazine-2-carboxylate (1.33 g, 6.07 mmol) in THF (100 mL) at -30 °C. After 1 hour, the mixture was quenched with saturated NH4CI, adjusted to pH 5-6 and extracted with EtOAc. The combined organics were dried and concentrated. The residue was chromatographed (2% to 4% MeOH/ CH2C12) to give t-butyl 3(4,6-dimethylpyrazolo[l ,5-a]pyrazin-2-yl)-3-oxopropanoate as a yellow oil (1.696 g, 97%), MS m/z 290.2 [M+H]+; *H NMR (500 MHz, DMSO-</6): δ 8.57 (1H, s), 7.50 (1H, s), 4.02 (2H, s), 2.70 (3H, s), 2.43 (3H, s), 1.38 (9H, s).
[001221] Step F: A solution of t-butyl 3-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3oxopropanoate (4.86 g, 16.8 mmol) in EtOH (30 mmol) was heated at 120 °C in a capped tube. After 1 hour, the solution was cooled to room temperature and the volatiles were removed to
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2017204248 22 Jun 2017 give ethyl 3-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate as a yellow solid (4.44 g, 98%), MS m/z 262.2 [M+H]+.
[001222] Step G: Amixture of2-amino-5-fluoro-pyridine (134 mg, 1.2 mmol), ethyl 3-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (261 mg, 1.0 mmol) and PPTs (12.6 mg, 0.05 mmol) was heated at 130 °C. After 8 hours, the mixture was cooled to room temperature and chromatographed to give 2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-7-fluoro-4Hpyrido[l,2-a]pyrimidin-4-one as a yellow solid (220 mg, 71%). MS m/z 310.2 [M+H]+; *H NMR (500 MHz, DMSO-6?6): δ 8.97-8.95 (1H, m), 8.55 (1H, s), 8.16-8.12 (1H, m), 7.87-7.85 (1H, m), 7.56 (1H, s), 7.03 (1H, s), 2.73, (3H, s), 2.43 (3H, s).
[001223] Step H: Following the procedure in Example 3, Step B, 2-(4,6-dimethylpyrazolo[l,5a]pyrazin-2-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (309 mg, 1.0 mmol) and piperazine (1.1 mL, 10 mmol) in DMA (1.0 mL) gave the title compound as a yellow solid (313 mg, 80%). M.P. 254-256 °C; MS m/z 390.4 [M+H]+; *HNMR (500 MHz, DMSO-</6): δ 8.55 (1H, s), 8.27 (1H, d, J= 2.7 Hz), 8.12 (1H, dd, J= 2.8 Hz, 9.7 Hz), 7.71 (1H, d, J= 9.7 Hz), 7.54 (1H, s), 6.95 (1H, s), 3.25 (4H, m), 2.72 (3H, s), 2.51 (4H, m, obscured by DMSO-i76), 2.43 (3H, s), 2.25 (3H, s).
[001224] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 9 by substituting the appropriate starting materials, reagents and reaction conditions.
[001225] Example 10 [001226] Preparation of Cpd 163
Figure AU2017204248B2_D0581
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2017204248 22 Jun 2017 [001227] Step A: Following the procedure in Example 5, Step E, 2-acetyl-4-methylthiazole (706 mg, 5 mmol), dimethyl carbonate (15 mL, 178 mmol) and NaH (60% dispersion in mineral oil, 1.14 g, 28.5 mmol) provided methyl 3-(4-methylthiazol-2-yl)-3-oxopropanoate. The crude product was used directly in the next step. MS m/z 200.1 [M+H]+.
[001228] Step B: Following the procedure in Example 1, Step B, 3-(4-methylthiazol-2-yl)-3oxopropanoate (199 mg, 1.0 mmo), trimethylorthoformate (0.25 mL, 2.25 mmol) and toluenesulfonic acid monohydrate (14.3 mg, 0.075 mmol) in MeOH (1.5 mL) afforded the dimethoxypropanoate.
[001229] Step C: Following the procedure in Example 1, Step C the dimethoxypropanoate from Step B and 2-amino-4-fluoro-pyridine (201.8 mg, 1.8 mmol) in DMA (1.5 mL) provided 7fluoro-2-(4-methylthiazol-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (175.5 mg, 67%). MS m/z 262.1 [M+H]+.
[001230] Step D: Following the procedure in Example 3, Step B, 7-fluoro-2-(4-methylthiazol2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (52.2 mg, 0.2 mmol) and piperazine (86 mg, 1 mmol) in DMSO (0.8 mL) provided the title compound (20 mg, 30%). M.P. 142-147 °C; MS m/z 328.2 [M+H]+; *H NMR (500 MHz, DMSO-<4): δ 8.27 (1H, dd, J= 2.7 Hz, 18.6 Hz), 8.11-8.16 (1H, m), 7.73 (1H, t, J= 9.2 Hz), 7.56 (1H, s), 6.88 (1H, d, J= 3.2 Hz), 3.29-3.31 (2H, m), 3.16-3.18 (2H, m), 2.89-2.91 (2H, m), 2.67-2.69 (2H, m), 2.47 (3H, s).
[001231] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 10 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001232] Example 11 [001233]
Figure AU2017204248B2_D0582
TsOH
DMAc, 160 °C 1 h
Figure AU2017204248B2_D0583
[001234] Step A: 5-Fluoronicotinic acid (1.0 g, 7.1 mmol) was dissolved in THF (10 mL) and cooled to 0 °C. A 1.4 M solution of methylmagnesium bromide in THF:toluene (3:1) (11.2 mL, 15.6 mmol) was added drop wise to the solution. The solution was allowed to warm to room temperature. The solution was stirred at room temperature for 4 hours, upon which IN aqueous HC1 (50 mL) was slowly added. The mixture was partitioned into EtOAc (200 mL) and aqueous IN NaOH (200 mL). The organic layer was washed with brine, dried over Na2SO4, filtered and concentrated. The residue was chromatographed on silica, eluting with EtOAc (0% to 50%) in hexanes to afford l-(5-fluoropyridin-3-yl)ethanone as a white powder (290 mg, 29%).
[001235] Step B: Following the procedure in Example 5, Step D, the methyl ketone from Step A, dimethyl carbonate (0.44 mL, 5.25 mmol) and sodium hydride (210 mg, 60% dispersion in mineral oil, 5.25 mmol) in THF (6 mL) afforded methyl 3-(5-fluoropyridin-3-yl)-3oxopropanoate as an off white powder (278 mg, 67%).
[001236] Step C: Methyl 3-(5-fluoropyridin-3-yl)-3-oxopropanoate (138 mg, 0.7 mmol) was combined with 5-fluoropyridin-2-amine (90 mg, 0.8 mmol) and toluenesulfonic acid monohydrate (6 mg, 0.03 mmol) in dimethylacetamide (0.5 mL). The mixture was heated to 160 °C for 1 hour. The mixture was cooled to 120 °C, before adding piperazine (300 mg, 3.5 mmol). The mixture was stirred at 120 °C for 1 hour. The mixture was loaded onto silica in CH2C12 and eluted with 0% to 8% MeOH (3% NH3) in CH2C12. The title compound was obtained as a yellow powder (37 mg, 16%). M.P. 201-208 °C; MS m/z 326.2 [M+H]+; *H NMR (DMSO-<4, 500 MHz): δ 9.25 (1H, s), 8.70 (1H, d, J = 2.8 Hz), 8.42 (1H, d, J = 10.2 Hz), 8.22 (1H, d, 2.7
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Hz), 8.12 (1H, dd, J = 9.8 Hz, 2.8 Hz), 7.74 (1H, d, J = 9.7 Hz), 7.11 (1H, s), 3.16 (4H, m), 2.89 (4H, m), 2.37 (1H, br s).
[001237] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 11 by substituting the appropriate starting materials, reagents and reaction conditions.
[001238] Example 12 [001239] Preparation of Cpd 98
Figure AU2017204248B2_D0584
[001240] Step A: lH-Indole-5-carboxylic acid (1.0 g, 6.2 mmol) was combined with N,Odimethylhydroxylamine hydrochloride (907 mg, 9.3 mmol), N-(3-dimcthylaminopropyl)-Aethylcarbodiimide hydrochloride (1.78 g, 9.3 mmol) and Ν,Ν-diisopropylethylamine (3.2 mL, 18.6 mmol) in CH2CI2 (12 mL). After stirring for 4 hours at room temperature, the mixture was washed with aqueous HC1 (IN, 20 mL). The organic layer was dried over Na2SC>4 and concentrated. The crude product was used directly in the next step.
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2017204248 22 Jun 2017 [001241] Step B: The crude product from Step A was dissolved in THF (20 mL). A 1.4 M solution of methylmagnesium bromide (11.2 mL, 15.6 mmol) in THF:toluene (3:1), was added drop wise to the solution. The solution was allowed to warm to room temperature. The solution was stirred at 50 °C for 1 hour, upon which IN aqueous HC1 (50 mL) was slowly added. The mixture was partitioned into EtOAc (200 mL) and aqueous IN NaOH (200 mL). The organic layer was washed with brine, dried over Na2SO4, filtered and concentrated. The residue was chromatographed on silica, eluting with EtOAc (0% to 50%) in hexanes to afford l-(lH-indol-5yl)ethanone as a white powder (323 mg, 33%).
[001242] Step C: Following the procedure in Example 5, Step E, the methyl ketone from Step B, dimethyl carbonate (0.46 mL, 5.5 mmol) and sodium hydride (220 mg, 60% dispersion in mineral oil, 5.5 mmol) in THF (6 mL) afforded methyl methyl 3-(lH-indol-5-yl)-3oxopropanoate as an off white powder (120 mg, 27%). MS m/z 216.1 [M-H]“ [001243] Step D: Following the procedure of Example 11, Step C, methyl 3-(lH-indol-5-yl)-3oxopropanoate (98 mg, 0.45 mmol), 5-fhioropyridin-2-amine (56 mg, 0.5 mmol), toluenesulfonic acid monohydrate (9 mg, 0.05 mmol) and piperazine (194 mg, 2.25 mmol) in dimethylacetamide (0.5 mL) afforded the title compound as an off-white powder (40 mg, 26%). M.P. 266-272 °C.MS m/z 346.2 [M+H]+ ; *H NMR (DMSO-<4, 500 MHz): δ 11.3 (1H, s), 8.46 (1H, s), 8.22 (1H, d, J = 2.8 Hz), 8.04 (1H, dd, J = 9.7 Hz, 2.8 Hz), 7.95 (1H, d, J = 8.7 Hz), 7.69 (1H, d, J = 9.7 Hz), 7.49 (1H, d, J = 8.6 Hz), 7.42 (1H, t, J = 2.7 Hz), 6.90 (1H, s), 6.57 (1H, m), 3.14 (4H, m), 2.89 (4H, m), 2.36 (1H, br s).
[001244] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 12 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001245] Example 13 [001246] Preparation of Cpd 107
Figure AU2017204248B2_D0585
[001247] Step A: Following the procedure in Example 12, Step A, imidazo[l,2-a]pyridine-7carboxylic acid (1.0 g, 6.2 mmol), Ν,Ο-dimethylhydroxylamine hydrochloride (907 mg, 9.3 mmol), N-(3-dimcthylaminopropyl)-;V'-cthylcarbodiimidc hydrochloride (1.78 g, 9.3 mmol) and Ν,Ν-diisopropylethylamine (3.2 mL, 18.6 mmol) in CH2CI2 (12 mL) gave N-methoxy-Nmethylimidazo[l,2-a]pyridine-7-carboxamide (505 mg, 40%).
[001248] Step B: Following the procedure in Example 12, Step B, the product from Step A (505 mg, 2.5 mmol), methylmagnesium bromide (3.6 mmol) in THF (10 mL) afforded 1(imidazo[l,2-a]pyridin-7-yl)ethanone (275 mg, 70%).
[001249] Step C: Following the procedure in Example 5, Step E, the methyl ketone from Step B (275 mg, 1.7 mmol), dimethyl carbonate (0.35 mL, 4.25 mmol) and sodium hydride (170 mg, 60% dispersion in mineral oil, 4.25 mmol) in THF (5 mL) afforded methyl 3-(imidazo[l,2a]pyridin-7-yl)-3-oxopropanoate as an off-white powder (215 mg, 58%).
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2017204248 22 Jun 2017 [001250] Step D: Following the procedure of Example 11, Step C, methyl 3-(imidazo[l,2a]pyridin-7-yl)-3-oxopropanoate (215 mg, 1.0 mmol), 5-fluoropyridin-2-amine (123 mg, 1.1 mmol), toluenesulfonic acid monohydrate (19 mg, 0.1 mmol) and piperazine (430 mg, 5 mmol) in dimethylacetamide (1.0 mL) afforded the title compound as an off-white powder (40 mg, 12%). M.P. 258-270 °C; MS m/z 347.0 [M+H]+: *H NMR (DMSO-<Z6, 500 MHz): δ 8.65 (1H, d, J = 7.2 Hz), 8.46 (1H, s), 8.24 (1H, d, J = 2.7 Hz), 8.11 (1H, dd, J = 9.7 Hz, 2.7 Hz), 8.06 (1H, s), 7.75 (1H, d, J = 9.7 Hz), 7.73 (1H, dd, J = 7.2 Hz, 2.7 Hz), 7.71 (1H, s), 7.10 (1H, s), 3.16 (4H, m), 2.89 (4H, m), 2.34 (1H, br s).
[001251] Example 14 [001252] Preparation of Cpd 171
Figure AU2017204248B2_D0586
[001253] Part 1, Step A: A mixture of 2-amino-5-fluoropyridine (11.20 g, 0.10 mol) and dimethyl malonate (57.0 mL, 0.50 mol) was heated at 230 °C for 1.5 hours. After cooling to room temperature, the precipitate was filtered and washed with ACN (3x) to give 7-fluorodhydro xy-4H-pyrido[l,2-a]pyrimidin-4-one as a dark solid (14 g), which was used directly in the next step. MS m/z 181.3 [M+H]+.
[001254] Part 1, Step B: A dark mixture of crude 7-fluoro-2-hydroxy-4H-pyrido[l,2a]pyrimidin-4-one (14g, ~77 mmol) in POCI3 (50 mL) and DIEA (13.3 mL, 77 mmol) was heated at 110 °C for 15 hours. The volatiles were removed and the dark residue was treated with ice-water, washed with water (3x) and dried to give a brown solid. The crude brown solid was chromatographed (5% MeOH in CH2CI2) to give 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin4-one as a yellow solid (9.84 g, 50%, 2 steps), MS m/z 199.2 [M+H]+; *H NMR (500 MHz, DMSO-t/ό): δ 8.99 (1H, dd, J = 2.8 Hz, 4.7 Hz), 8.27-8.23 (1H, m), 7.85 (1H, dd, J= 5.4 Hz, 9.8 Hz), 6.56 (1H, s).
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Figure AU2017204248B2_D0587
Pd(dppf)CI2 DCM ^yN
KOAc n A L —
Dioxane <\-0 °C, 15h J [001255] Part 2: A mixture of 6-bromo-2-methylbenzo[d]oxazole (1.06 g, 5.0 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2-dioxaborolane) (1.40 g, 5.5 mmol), KOAc (1.47 g, 15 mmol) and Pd(dppf)C12«CH2C12 (122 mg, 0.15 mmol) in dioxane ( 8 mL) was degassed and heated under N2 at 85 °C. After 15 hours, the mixture was diluted with EtOAc, filtered through celite and concentrated. The residue was chromatographed to give 2-methyl-6-(4,4,5,5tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[d]oxazole as a light orange solid (1.30 g, 100%), MS m/z 260.4 [M+H]+.
Figure AU2017204248B2_D0588
Figure AU2017204248B2_D0589
[001256] Part 3, Step A: A mixture of 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.436 g, 2.2 mmol), 2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[d]oxazole (0.647 g, 2.5 mmol), Pd(dppf)C12 in DCM (90 mg, 0.11 mmol), K2CO3 (2M, 3.0 mL, 6.0mmol), and ACN (6 mL) was degassed and then heated under N2 at 60 °C for 3.5 hours. The volatiles were removed and the residue was chromatographed (2.5% McOH/CT-LCb) to give 7-fluoro-2(2-methylbenzo[d]oxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as an off-white solid (0.64 g, 98%). MS m/z 296.4 [M+H]+; *H NMR (500 MHz, DMSOY6): δ 8.96-8.95 (1H, m), 8.51 (1H, d, J = 1.6 Hz), 8.26 (1H, dd, J= 8.5 Hz, 1.6 Hz), 8.16-8.12 (1H, m), 7.91-7.88 (1H, m), 7.78 (1H, d, J = 8.4 Hz), 7.17 (1H, s), 2.67 (3H, s).
[001257] Part 3, Step B: A mixture of 7-fluoro-2-(2-methylbenzo[d]oxazol-6-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (60 mg, 0.2 mmol) and 1-Methylpiperazine (0.11 mL, 1.0 mmol) in DMA (0.3 mL) was heated at 120 °C for 15 hours. The volatiles were removed and the residue was chromatographed to give the title compound as a yellow solid (46 mg, 61%).
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2017204248 22 Jun 2017
M.P. 178-183 °C; MS m/z 376.5 [M+H]+; *H NMR (500 MHz, DMSO-t/6): δ 8.47 (1H, d, J= 1.5 Hz), 8.25 (1H, d, J = 2.7 Hz), 8.23 (1H, dd, J= 1.6 Hz, 8.4 Hz), 8.11 (1H, dd, J= 2.8 Hz, 9.7 Hz), 7.76 (1H, d, J = 8.6 Hz), 7.74 (1H, d, J= 9.9 Hz), 7.06 (1H, s), 3.25 (4H, m), 2.66 (3H, s), 2.25 (3H, s).
[001258] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 14 by substituting the appropriate starting materials, reagents and reaction conditions.
[001259] Example 15 [001260] Preparation of 109
Figure AU2017204248B2_D0590
DMSO
120 °C, 0.5 h
Figure AU2017204248B2_D0591
[001261] Step A: 2-Chloro-7-tluoro-4H-pyrido[l,2-a]pyrimidin-4-one (990 mg, 5 mmol, prepared according to the procedure in Example 14, Part 1) was combined with 2-aminopyridine5-boronic acid pinacol ester (1.21 g, 5.5 mmol), tetrakis(triphenylphosphine) palladium(O) (281 mg, 0.25 mmol), CH3CN (10 mL) and aqueous K2CO3 (IM, 10 mL). The mixture was heated to 80 °C for 6 hours. The mixture was cooled to room temperature, and then filtered. The collected precipitate was washed with CH3CN and dried under vacuum, providing 2-(6-aminopyridin-3yl)-7-fhioro-4H-pyrido[l,2-a]pyrimidin-4-one as a yellow powder (1.13 g, 88%). MS m/z 257.0 [M+H]+; *H NMR (DMSO-d6, 500 MHz): δ 8.90 (1H, m), 8.83 (1H, d, J = 2.1 Hz), 8.17 (1H, dd, J = 8.8 Hz, 2.5 Hz), 8.07 (1H, m), 7.78 (1H, dd, J = 9.8 Hz, 5.3 Hz), 6.87 (1H, s), 6.58 (2H, s), 6.53 (1H, d, 8.9 Hz).
[001262] Step B. 2-(6-Arninopyridin-3-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (254 mg, 1.0 mmol) was combined with chloroacetone (100 pL, 1.2 mmol) in DMSO (360 pL, 1.65 mmol). The mixture was heated to 120 °C for 30 minutes. After cooling to room temperature,
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2017204248 22 Jun 2017 the mixture was partitioned in CH2CI2 and saturated aqueous NaHC’CL,. The organic layer was concentrated. The residue was eluted from silica with MeOH (0% to 6%) in CH2CI2, affording 7-fluoro-2-(2-methylimidazo[l,2-a]pyridin-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a tan powder (136 mg, 46%). MS m/z 295.0 [M+H]+; *H NMR (DMSO-<4, 500 MHz): δ 9.40 (1H, s),
8.95 (1H, m), 8.14 (1H, m), 7.96 (1H, dd, J = 9.5 Hz, 1.9 Hz), 7.85 (2H, m), 7.54 (1H, J = 9.4), 7.08 (1H, s), 2.36 (3H, s).
[001263] Step C: 7-Fluoro-2-(2-methylimidazo[l,2-a]pyridin-6-yl)-4H-pyrido[l,2-a]pyrimidin4-one (45 mg, 0.15 mmol) was combined with piperazine (65 mg, 0.75 mmol) in dimethylacetamide (0.5 mL). The mixture was heated to 150 °C for 1 hour. The mixture was loaded onto silica and eluted with 0% to 8% MeOH (3% NH3) in CH2C12 to afford the title compound as a tan powder (33 mg, 61%). M.P. 259-267 °C; MS m/z 361.1 [M+H]+; *H NMR (DMSO-ί/ό, 500 MHz): δ 9.36 (1H, s), 8.23 (1H, d, J = 2.7 Hz), 8.10 (1H, dd, J = 9.7 Hz, 2.7 Hz), 7.94 (1H, dd, J = 9.5 Hz, 1.8 Hz), 7.82 (1H, s), 7.70 (1H, d, J = 9.7 Hz), 7.52 (1H, d, J = 9.5 Hz),
6.96 (1H, s), 3.15 (4H, m), 2.89 (4H, m), 2.36 (3H, s).
[001264] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 15 by substituting the appropriate starting materials, reagents and reaction conditions.
[001265] Example 16 [001266] Preparation of Cpd 209
Figure AU2017204248B2_D0592
Figure AU2017204248B2_D0593
o
Pd(PPh3)4
K2CO3
CH3CN:H2O °C, 4 h
Figure AU2017204248B2_D0594
[001267] Step A: 3-Fluoropyridin-2-aminc (5.0 g, 45 mmol) was combined withNbromosuccinimide (8.0 g, 45 mmol) in CH3CN (40 mL). The mixture was stirred at room
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2017204248 22 Jun 2017 temperature for 30 minutes. Chloroacetone (4.3 mL, 54 mmol) was added to the mixture. The mixture was heated to 100 °C, allowing the CH3CN to evaporate. After 1 hour, the temperature was raised to 120 °C for 2 hours. The mixture solidified upon cooling. The solid material was dissolved in H2O (50 mL). To the aqueous solution was added 100 mL of saturated aqueous NaHCCh. A precipitate formed, and was collected by vacuum filtration. The solid material was washed with H2O and dried under vacuum. The material was loaded onto silica in CH2C12 and eluted with EtOAc (0% to 30%) in CH2C12, providing 6-bromo-8-fluoro-2-methylimidazo[l,2a]pyridine as a tan powder (4.65 g, 45%). MS m/z 229.2 [M+H]+, 231.2 [M+2+H]+; *H NMR (DMSO-tie, 500 MHz): δ 8.72 (1H, s), 7.79 (1H, s), 7.39 (1H, d, J = 10.7 Hz), 2.35 (3H, s). [001268] Step B: Following the procedure in Example 14, Part 2, 6-Bromo-8-fluoro-2methylimidazo[l,2-a]pyridine (912 mg, 4 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2dioxaborolane) (1.32 g, 4.8 mmol), [l,l'-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (163 mg, 0.2 mmol) and potassium acetate (784 mg, 8 mmol) provided 8fluoro-2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridine. The crude product was used directly in the next step.
[001269] Step C: Following the procedure in Example 14, Part 3, Step A, the crude product of 8-fluoro-2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridine from step A and 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (4 mmol, prepared in Example 14, Part 1, Step B), tetrakis(triphenylphosphine) palladium(0) (225 mg, 0.2 mmol) and aqueous K2CO3 (IM, 8 mL) provided 7-fluoro-2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-4Hpyrido[l,2-a]pyrimidin-4-one as a tan powder (860 mg, 69%). MS m/z 313.0 [M+H]+.
[001270] Step D: Following the procedure in Example 14, Part 3, Step B, 7-Fluoro-2-(8-fluoro2-methylimidazo[l,2-a]pyridin-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (65 mg, 0.21 mmol) and piperazine (90 mg, 1.05 mmol) afforded the title compound as a tan powder (34 mg, 43%). M.P. 282-288 °C; MS m/z 379.4 [M+H]+; 'HNMR (DMSO-J6, 500 MHz): δ 9.26 (1H, s), 8.21 (1H, d, J = 2.6 Hz), 8.10 (1H, dd, J = 9.7 Hz, 2.7 Hz), 7.93 (1H, d, J = 2.3 Hz), 7.84 (1H, d, J = 12.7 Hz), 7.68 (1H, d, J = 9.8 Hz), 6.98 (1H, s), 3.14 (4H, m), 2.88 (4H, m), 2.39 (3H, s), 2.35 (1H, br s).
[001271] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 16 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001272] Example 17 [001273] Preparation of Cpd 182
Figure AU2017204248B2_D0595
[001274] Step A: Following the procedure for Example 14, Part 3, Step A, 3-fluoro-2-methoxy5-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)pyridine (-4.85 mmol, crude product prepared by the procedure in Example 14, Part 2) and 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.64 g, 3.23 mmol, prepared in Example 14, Part 1) gave 7-fluoro-2-(5-fluoro-6methoxypyridin-3-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (1.0 g, 100%) as a brown solid, MS m/z 290.4 [M+H]+.
[001275] Step B: A mixture of 7-fluoro-2-(5-fluoro-6-methoxypyridin-3-yl)-4H-pyrido[l,2a]pyrimidin-4-one (145 mg, 0.5 mmol) and piperazine (43 mg, 0.5 mmol) in DMA (1 mL) was heated at 120 °C. After 4 hours, the volatiles were removed and the residue was chromatographed (20% McOH/CTLCL) to give the title compound as a yellow solid (63 mg, 36%). M.P. 166-170 °C; MS m/z 356.4 [M+H]+: 'HNMR (500 MHz, DMSO-<76): δ 8.83 (lH,d, J= 1.9 Hz), 8.39 (1H, dd, J = 1.9 Hz, 11.8 Hz), 8.23 (1H, d, J=2.6Hz), 8.10 (1H, dd, J= 2.7 Hz, 9.7 Hz), 7.71 (1H, d, J = 9.7 Hz), 7.02 (1H, s), 4.03 (3H, s), 3.20 (4H, m), 2.94 (4H, m).
[001276] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 17 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001277] Example 18 [001278] Preparation of Cpd 191
Figure AU2017204248B2_D0596
[001279] Step A: Following the procedure of Example 14, Part 3, Step A, 2-chloro-7-fluoro4H-pyrido[l,2-a]pyrimidin-4-one (199 mg, 1 mmol, prepared in Example 14, Part 1), 1-methyl4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-pyrazole (239.2 mg 1.15 mmol), Pd(PPh3)4 (57.8 mg, 0.05 mmol) and K2CO3 (276.4 mg, 2 mmol) in CH3CN/H2O (1.0 mL/1.0 mL) gave 7fluoro-2-(1-methyl-lH-pyrazol-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (97.6mg, 40%). MS m/z 245.1 [M+H]+.
[001280] Step B: Following the procedure of Example 14, Part 3, Step B, 7-fluoro-2-(l-methyllH-pyrazol-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (48.8 mg, 0.2 mmol) and (S)-2methylpiperazine (100 mg, 1 mmol) in DMSO (0.5 mL) gave the title compound (32.1mg, 49.5%). M.P. 168-170 °C; MS m/z 325.2 [M+H]+; *H NMR (500 MHz, DMSO-</6): δ 8.35 (1H, s), 8.18 (1H, d, J= 2.8 Hz), 8.06 (1H, s), 8.02 (1H, dd, J= 9.7 Hz, 2.6 Hz), 7.56 (1H, d, J = 9.8 Hz), 6.63 (1H, s), 3.89 (3H, s), 3.54-3.57 (2H, m), 2.99-3.02 (1H, m), 2.80-2.85 (2H, m), 2.582.64 (1H, m), 2.24-2.28 (1H, m), 1.05 (3H, d, J= 6.3 Hz).
[001281] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 18 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001282] Example 19 [001283] Preparation of Cpd 128
Figure AU2017204248B2_D0597
Figure AU2017204248B2_D0598
[001284] Step A: To a solution of 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (199 mg, 1.0 mmol, prepared in Example 14, Part 1) in 2 mL of acetonitrile were added 5-(4,4,5,5tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-pyrrolo[2,3-b]pyridine (293 mg, 1.2 mmol), tetrakistriphenylphosphine Pd (0) (57.8 mg, 0.05 mmol) and aqueous K2CO3 (IM in water, 2 mmol) at room temperature. The mixture was stirred at 85 °C for 3 hours and cooled to room temperature. The solid was filtered off and washed with dichloromethane, water and acetonitrile to give 7-fluoro-2-(lH-pyrrolo[2,3-b]pyridin-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (249 mg, 89%). MS mA 281.1 [M+H]+.
[001285] Step B: A solution of 7-fluoro-2-(lH-pyrrolo[2,3-b]pyridin-5-yl)-4H-pyrido[l,2a]pyrimidin-4-one (100 mg, 0.36 mmol) in DMSO (1 mL) was treated with piperazine (154 mg, 1.79 mmol) at room temperature. The solution was stirred at 160°C for 30 minutes and cooled to room temperature. The reaction mixture was loaded on silica gel without concentration and eluted with MeOH (0% to 20%) in CH2CI2 to provide the title compound (74.8 mg, 60%).
M.P. 252-255 °C; MS m/z 347.1 [M+H]+; *HNMR (DMSO-cZ6, 500 MHz) δ 11.8 (1H, s), 8.95 (1H, d, J= 2.0 Hz)), 8.64 (1H, d, J = 1.7 Hz), 8.14 (1H, d, J= 2.3 Hz), 8.0-7.9 (1H, m), 7.62 (1H, d, J= 9.6 Hz), 7.45 (1H, m), 6.9 (1H, s), 6.48 (1H, br. m). 3.1 (4H, m), 2.85 (4H, m). [001286] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 19 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001287] Example 20 [001288] Preparation of Cpd 153
Figure AU2017204248B2_D0599
Figure AU2017204248B2_D0600
[001289] Step A: 2-(3-Fluoro-4-hydroxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin4-one (180 mg, 0.53 mmol), prepared by Suzuki coupling according to the procedure in Example 14, Part 3, Step A, was combined with di-tert-butyl dicarbonate (131 mg, 0.6 mmol) and triethylamine (85 pL, 0.6 mmol) in MeOH (4 mL). The mixture was stirred at 50 °C for 2 hours. The mixture was filtered, leaving a yellow powder, which was washed with MeOH and dried under vacuum, affording tert-butyl 4-(2-(3-fluoro-4-hydroxyphenyl)-4-oxo-4H-pyrido[l,2a]pyrimidin-7-yl)piperazine-l-carboxylate (230 mg, 99%). MS m/z 441.0 [M+H]+.
[001290] Step B: tert-Butyl 4-(2-(3-fluoro-4-hydroxyphenyl)-4-oxo-4H-pyrido[l,2a]pyrimidin-7-yl)piperazine-l-carboxylate (60 mg, 0.14 mmol) was combined with K2CO3 (39 mg, 0.28 mmol) and iodoethane (48 pL, 0.21 mmol) in DMF (1 mL). The mixture was stirred at 50 °C for 1 hour. After cooling to room temperature, H2O (0.5 mL) was added drop wise to the mixture. The precipitate was collected, washed with H2O, and dried under vacuum.
[001291] Step C: To the crude product from Step B was added trifluoroacetic acid (1 mL). After standing for 10 minutes, volatiles were removed. The residue was partitioned in CH2C12 (4 mL) and aqueous K2CC>3 (IM, 2 mL). The organic layer was removed and concentrated, providing the title compound (36 mg, 70%). M.P. 180-186 °C; MS m/z 369.1 [M+H]+; *H NMR (DMSO-i/6, 500 MHz): δ 8.21 (1H, d, J = 2.7 Hz), 8.02 (3H, m), 7.68 (1H, d, J = 9.7 Hz), 7.27 (1H, t, J = 8.8 Hz), 6.93 (1H, s), 4.20 (2H, q, J = 7.0 Hz), 3.14 (4H, m), 2.88 (4H, m), 2.36 (1H, br), 1.39 (3H, t, J = 7.0 Hz).
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2017204248 22 Jun 2017 [001292] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 20 by substituting the appropriate starting materials, reagents and reaction conditions.
[001293] Example 21 [001294] Preparation of Cpd 179
Figure AU2017204248B2_D0601
Figure AU2017204248B2_D0602
[001295] Step A: A mixture of 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (300 mg, 1.5 mmol) and 4-methyl-lH-imidazole (429 mg, 6.0 mmol) in DMSO (1.5 mL) was heated at 90 °C for 15 hours. The mixture was cooled to room temperature and diluted with CI I3CN. The precipitate was filtered, washed with CH3CN (3x) and dried to give 2-(4-methyl-lH-imidazol-lyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as an off-white solid (225 mg, 61%). MS m/z 345.4 [M+H]+.
[001296] Step B: A mixture of 2-(4-methyl-lH-imidazol-l-yl)-7-(piperazin-l-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (73 mg, 0.3 mmol) and piperazine (129 mg, 1.5 mmol) in DMA (0.6 mL) was heated at 120 °C for 4 hours. The DMA was removed and the mixture was diluted with CH3CN. The precipitate was filtered, washed with CH3CN (3x) and dried to give the title compound as a yellow solid (310 mg, 95%). M.P. 204-206°C; MS m/z 311.1 [M+H]+; 'H NMR (500 MHz, DMSO-ti6): δ 8.47 (lH,d, J= 1.2 Hz), 8.22 (1H, d, J= 2.7 Hz), 8.13 (1H, dd, J = 2.8 Hz, 9.6 Hz), 7.69 (1H, d, J= 1.1 Hz), 7.63 (1H, d, J= 9.6 Hz), 6.68 (1H, s), 3.14 (4H, m), 2.87 (4H, m), 2.16 (3H, s).
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2017204248 22 Jun 2017 [001297] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 21 by substituting the appropriate starting materials, reagents and reaction conditions.
[001298] Example 22 [001299] Preparation of Cpd 143
Figure AU2017204248B2_D0603
[001300] Step A: Following the procedure in Example 1, Step A, methyl 3-(3,4dimethoxyphenyl)-3-oxopropanoate (5.0 gram, 20 mmol), trimethylortho formate (3.5 mL, 30 mmol) and p-toluenesulfonic acid monohydrate (380 mg, 2 mmol) in methanol (50 mL) provided methyl 3-(3,4-dimethoxyphenyl)-3,3-dimethoxypropanoate. The crude product was used directly in the next step without purification. *H NMR (DMSO-6?6, 500 MHz): δ 6.93 (3H, m), 3.82 (2H, q, J = 7.2 Hz), 3.75 (3H, s), 3.73 (3H, s), 3.12 (6H, s), 2.92 (2H, s), 0.92 (3H, t, J = 7.1
Hz).
[001301] Step B: To the above ketal intermediate was added 5-bromopyridin-2-amine (3.5 g, 20 mmol). The mixture was heated to 150 °C for 2 hours, then cooled to room temperature. The crude product was triturated with acetonitrile and filtered to provide the title compound as a white solid (6.8 gram, 94%). MS m/z 360.9 [M+H]+, 362.9 [M+2+H]+.
[001302] Step C: Following the procedure in Example 14, Part 3, Step A, 7-bromo-2-(3,4dimethoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (181 mg, 0.5 mmol), tert-butyl 4-(4,4,5,5304
2017204248 22 Jun 2017 tetramethyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (170 mg, 0.55 mmol), potassium carbonate (207 mg, 1.5 mmol) and Pd(dppf)C12 (36.5 mg, 0.05 mmol) in acetonitrile (2 mL) provided tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrido[l,2a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate as a white solid (0.22 mg, 95%). MS m/z 464.1 [M+H]+; *H NMR (500 MHz, DMSO-r/6) δ 8.82 (s, 1H), 8.24 (dd, J = 1.5, 9 Hz, 1H), 7.85 (dd, J = 2, 8.5 Hz, 1H), 7.78 (d, J = 2 Hz, 1H), 7.73 (d, J = 9.5 Hz, 1H), 7.10 (d, J = 9 Hz, 1H), 7.05 (s, 1H), 6.54 (s, 1H), 4.09 (bs, 2H), 3.89 (s, 3H), 3.85 (s, 3H), 3.60-3.59 (m, 2H), 2.64-2.63 (m,2H), 1.45 (s, 9H).
[001303] Step D: The intermediate obtained from Step A was suspended in a solution of HC1 in dioxane (4M, 4 mL). The reaction mixture was stirred at room temperature for 2 hours. The mixture was concentrated and the residue was partitioned between dichloromethane and saturated aqueous sodium bicarbonate. The organics were dried, concentrated and chromatographed on a basic alumina column, eluting with dichloromethane with methanol (10%) to provide the title compound as a white solid (150 mg, 88%). M.P. 196-198 °C; MS m/z 364.1 [M+H]+; *H NMR (500 MHz, DMSO-d6) δ 8.77 (d, J = 2 Hz, 1H), 8.24 (dd, J = 2, 9.5 Hz, 1H), 7.85 (dd, J = 2, 8.5 Hz, 1H), 7.78 (d, J = 2 Hz, 1H), 7.71 (d, J = 9.5 Hz, 1H), 7.09 (d, J = 8.5 Hz, 1H), 7.03 (s, 1H), 6.60 (s, 1H), 3.89 (s, 3H), 3.85 (s, 3H), 3.45 (d, J = 2.5 Hz, 2H), 2.97 (t, J = 5.5 Hz, 2H), 2.41 (bs, 2H).
[001304] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 22 by substituting the appropriate starting materials, reagents and reaction conditions.
[001305] Example 23 [001306] Preparation of Cpd 188
Figure AU2017204248B2_D0604
DCM ch2o, NaBH(OAc)3
Figure AU2017204248B2_D0605
[001307] A mixture of 2-(3,4-dimethoxypheny 1)-7-( 1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (30 mg, 0.08 mmol), formaldehyde (0.05 mL, 37%, ~ 0.8 mmol) and sodium triacetoxyborohydride (50 mg, 0.24 mmol) was stirred in dichloromethane (1 mL)
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2017204248 22 Jun 2017 for 2 hr. The reaction mixture was diluted with dichloromethane and neutralized with sodium bicarbonate. The organics were dried and concentrated to provide the title compound as a white solid (26 mg, 83%). M.P. 165-168 °C; MS m/z 378.4 [M+H]+; *H NMR (500 MHz, DMSO-46) δ 8.79 (d, J = 2 Hz, 1H), 8.25 (dd, J = 2, 9.5 Hz, 1H), 7.85 (dd, J = 2, 8.5 Hz, 1H), 7.78 (d, J = 2 Hz, 1H), 7.71 (d, J = 9.5 Hz, 1H), 7.10 (d, J = 8.5 Hz, 1H), 7.04 (s, 1H), 6.56 (s, 1H), 3.89 (s, 3H), 3.85 (s, 3H), 3.09 (bs, 2H), 2.64-2.61 (m, 2H), 2.56 (bs, 2H), 2.51 (s, 3H).
[001308] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 23 by substituting the appropriate starting materials, reagents and reaction conditions.
[001309] Example 24 [001310] Preparation ofCpd 144
Figure AU2017204248B2_D0606
[001311] Step A: A mixture of tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrido[l,2a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate (100 mg, 0.22 mmol, prepared as depicted in Example 22, Step C) and Pd/C (10%) (10 mg) in ethyl acetate (25 mL) was stirred under 1 atmosphere of hydrogen overnight. The reaction mixture was filtered through celite, concentrated and chromatographed on a silica column, eluting with EtOAc/CPLCL (30/70) to provide tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)piperidine1-carboxylate as a white solid (75 mg, 75%), which was used directly in the next step without further purification. MS m/z 466.4 [M+H]+; 'H NMR (500 MHz, DMSO-i4) δ 8.57 (s, 1H), 7.80 (dd, J = 2.5, 9.5 Hz, 1H), 7.64 (dd, J = 2, 8.5 Hz, 1H), 7.57 (d, J = 2 Hz, 1H), 7.53 (d, J = 9 Hz, 1H), 6.9 (d, J = 9 Hz, 1H), 6.82 (s, 1H), 3.92 (bs, 2H), 3.69 (s, 3H), 3.65 (s, 3H), 2.78-2.71 (m, 2H), 2.69-2.65 (1H, m), 1.69-1.67 (m, 2H), 1.41-1.38 (m, 2H), 1.24 (s, 9H).
306
2017204248 22 Jun 2017 [001312] Step B: Following the procedure in Example 22, Step D, the above product from Step A and HC1 in dioxane (4M, 3 mL) provided the title compound as a white solid (49 mg, 83%). M.P. 214-217 °C; MS m/z 366.4 [M+H]+; *H NMR (500 MHz, DMSO-t/6) δ 8.88 (d, J - 2 Hz, 1H), 8.09 (dd, J = 2, 9.5 Hz, 1H), 7.98 (dd, J = 2, 8.5 Hz, 1H), 7.91 (d, J = 2 Hz, 1H), 7.88 (d, J = 9 Hz, 1H), 7.23 (d, J = 8.5 Hz, 1H), 7.15 (s, 1H), 4.02 (s, 3H), 3.98 (s, 3H), 3.30 (d, J = 11.5 Hz, 2H), 3.01 (tt, J = 2 Hz, 12 Hz, 1H), 2.87 (t, J = 12 Hz, 2H), 2.02 (d, J = 12.5 Hz, 2H), 1.801.73 (m, 2H).
[001313] Example 25 [001314] Preparation of Cpd 164
Figure AU2017204248B2_D0607
DCM
CH2O
NaBH(OAc)3
Figure AU2017204248B2_D0608
[001315] Following the procedure in Example 23, 2-(3,4-dimethoxyphenyl)-7-(piperidin-4-yl)4H-pyrido[l,2-a]pyrimidin-4-one (10 mg, 0.027 mmol), formaldehyde (10 pL, 37%, 0.13 mmol) and sodium triacctoxyborohydridc (17 mg, 5.7 mmol) in dichloro methane (0.5 mL) provided the title compound as a white solid (7.6 mg, 73% ). M.P. 181-183 °C; MS m/z 380.1 [M+H]+; *H NMR (500 MHz, DMSO-ri6) δ 8.76 (d, J = 2 Hz, 1H), 8.0 (dd, J = 2, 9 Hz, 1H), 7.84 (dd, J = 2, 8.5 Hz, 1H), 7.77 (d, J = 2 Hz, 1H), 7.72 (d, J = 9.5 Hz, 1H), 7.09 (d, J = 8.5 Hz, 1H), 7.01 (s, 1H), 3.89 (s, 3H), 3.84 (s, 3H), 2.91 (d, J = 9.5 Hz, 2H), 2.73-2.64 (m, 1H), 2.22 (s, 3H), 2.01 (t, J = 8.5 Hz, 2H), 1.88-1.85 (m, 2H), 1.71-1.69 (m, 2H).
[001316] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 25 by substituting the appropriate starting materials, reagents and reaction conditions.
307
2017204248 22 Jun 2017 [001317] Example 26 [001318] Preparation of Cpd 263
Figure AU2017204248B2_D0609
Figure AU2017204248B2_D0610
[001319] Part 1: Following the procedure in Example 14, Part 2, 7-Bromo-2-(3,4dimethoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (661 mg, 1.8 mmol), prepared in Example 22, Step B, KO Ac (530 mg, 5.4 mmol), bis(pincolato)diboron (700 mg, 2.7 mmol), and Pd(dppf)C12 (60 mg, 0.09 mmol) in dioxane (5 mL) provided 2-(3,4-dimethoxyphenyl)-7(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a white solid (560 mg, 76%). MS m/z 327.1 [M+H]+ for boronic acid.
TVf
Figure AU2017204248B2_D0611
[001320] Part 2: To a solution of tert-butyl 3-oxopiperidine-l-carboxylate (482 mg, 2.4 mmol) in 2-methyltetrahydrofuran (2.5 mL) was added drop wise a solution of sodium bis(trimethylsilyl)amide (2.6 mL, 2.6 mmol, 1.0M in THF) at -78°C under argon. The mixture was stirred at -78°C for 1 hr, followed by the addition of a solution of N-(5-chloropyridin-2-yl)l,l,l-trifhxoro-N-(trifluoromethylsulfonyl)-methanesulfonamide (1.0 gram, 2.5 mmol) in 2methyltetrahydrofuran (2.5 mL), and then the reaction was allowed to warm to room temperature over 2 hours. After stirring at room temperature overnight, the reaction was quenched with saturated aqueous sodium carbonate, diluted with ether, and the organics were washed with water, dried and concentrated. The crude product was chromatographed on a basic alumina column, eluting with 5% ethyl acetate in hexane to provide the title compound as a colorless oil (290 mg, 37%).
308
2017204248 22 Jun 2017
Figure AU2017204248B2_D0612
[001321] Part 3, Step A: Following the procedure of Example 14, Part 3, Step A, 2-(3,4dimethoxyphenyl)-7-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-4H-pyrido[l,2-a]pyrimidin-4one (370 mg, 0.91 mmol), tert-butyl 3-(trifhioromethylsulfonyloxy)-5,6-dihydropyridine-l(2H)carboxylate (290 mg, 0.88 mmol), potassium carbonate (364 mg, 2.6 mmol) and Pd(dppf)C12 (58 mg, 0.08 mmol) in acetonitrile (4 mL) provided tert-butyl 3-(2-(3,4-dimethoxyphenyl)-4-oxo4H-pyrido[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate as a white solid (0.22 mg, 62%). MS m/z 464.3 [M+H]+.
[001322] Part 3, Step B: Following the procedure in Example 22, Step B, tert-butyl 3-(2-(3,4dimethoxyphenyl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)carboxylate (220 mg, 0.47 mmol) and HC1 in dioxane (4M, 5 mL) provided the title compound (160 mg, 79%). M.P. 146-150 °C; MS m/z 364.2 [M+H]+; *H NMR (500 MHz, DMSO-ck) δ 8.73 (d, J = 2 Hz, 1H), 8.23 (dd, J = 2, 9.5 Hz, 1H), 7.85 (dd, J = 2, 8.5 Hz, 1H), 7.78 (d, J = 2.5 Hz, 1H), 7.71 (d, J = 9.5 Hz, 1H), 7.10 (d, J = 8.5 Hz, 1H), 7.05 (s, 1H), 6.60 (s, 1H), 3.89 (s, 3H), 3.85 (s, 3H), 3.29 (bs, 2H), 2.40-2.36 (m, 4H).
309
2017204248 22 Jun 2017 [001323] Example 27 [001324] Preparation of Cpd 237
Figure AU2017204248B2_D0613
[001325] Step A: NaH (60% dispersion in mineral oil, 12mg, 0.3 mmol) was added slowly to 1Boc-4-hydroxypiperidine (48.3 mg, 0.24 mmol) in anhydrous THF at room temperature. The reaction mixture was stirred at room temperature for 10 minutes, and 2-(3,4-dimetho xyphenyl)7-F-4H-pyrido[l,2-a]pyrimidin-4-one (60 mg, 0.2 mmol) was added. The reaction mixture was then heated at 70°C for 3 hours. A small amount of ice water was added to quench the reaction. After most of the THF was evaporated, ether was added to the mixture, and the precipitate was filtered and dried to provide tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrido[ 1,2a]pyrimidin-7-yloxy)piperidine-l-carboxylate, which was used in the next step without further purification.
[001326] Step B: tert-Butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7yloxy)piperidine-l-carboxylate was dissolved into CH2CI2/TFA (0.5 mL / 0.5 mL) at 0 °C. The mixture was stirred at 0 °C for 2 hours, until the starting material disappeared. After most of the TFA was evaporated, ice cold saturated NaHCCfi was added to the reaction mixture. The mixture was extracted with CH2CI2. The organic layer was dried over MgSCfi and concentrated to provide the title compound (57 mg, 74.8% for 2 steps). M.P. 221-224 °C; MS m/z 382.2 [M+H]+; *H NMR (500 MHz, DMSO-</6): δ 8.58 (1H, d, J= 2.9 Hz)„7.81-7.86 (2H, m), 7.737.78 (2H, m), 7.08 (1H, d, J= 8.7 Hz), 7.01 (1H, s), 4.82-4.86 (1H, m), 3.87 (3H, s), 3.83 (3H, s), 3.23-3.27 (2H, m), 3.04-3.09 (2H, m), 2.13-2.18 (2H, m), 1.85-1.91 (2H, m).
[001327] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 27 by substituting the appropriate starting materials, reagents and reaction conditions.
310
2017204248 22 Jun 2017 [001328] Example 28 [001329] Preparation of Cpd 52
Figure AU2017204248B2_D0614
[001330] Step A: Ethyl 2-(3,4-dimethoxyphenyl)acetate (673 mg, 3 mmol) was combined with l-tert-butoxy-N,N,N',N'-tetramethylmethanediamine (0.68 mL, 3.3 mmol). The mixture was heated to 60 °C for 2 hours. The mixture was used directly in the next step without work-up.
[001331] Step B: 4-Chloropyridin-2-amine (424 mg, 3.3 mmol) was added directly to the mixture. The mixture was heated to 120 °C for 20 minutes. The mixture was used directly in the next step without work-up.
[001332] Step C: Piperazine (1.3 g, 15 mmol) was added to the mixture from Step B, which stirred for an additional 30 minutes at 120 °C. The mixture was chromatographed on silica with 10% MeOH (1% triethylamine) in CH2CI2 affording the title compound as a yellow powder (120 mg, 11%). M.P. 175-179 °C; MS m/z 367.2 [M+H]+; *H NMR (DMSO-ti6, 500 MHz): δ 8.84 (1H, d, J = 8.2 Hz), 8.40 (1H, s), 7.44 (1H, d, J = 2.1 Hz), 7.34 (1H, dd, J = 8.4 Hz, 2.1 Hz), 7.28 (1H, dd, J = 8.2 Hz, 2.8 Hz), 6.99 (1H, d, J = 8.5 Hz), 6.73 (1H, d, J = 2.8 Hz), 3.80 (3H, s), 3.78 (3H, s), 3.48 (4H, m), 2.82 (4H, m).
311 [001333] Example 29 [001334] Preparation of Cpd 220
Figure AU2017204248B2_D0615
2017204248 22 Jun 2017
Figure AU2017204248B2_D0616
[001335] Step A: 7-Bromo-2-chloro-4H-pyrido[l,2-a]pyrimidin-4-one (130 mg, 0.5 mmol), prepared according to Example 14, Part 1, was combined with tert-butyl piperazine-1 carboxylate (140 mg, 0.75 mmol) and triethylamine (0.14 mL, 1.0 mmol) in EtOH (2 mL). The mixture was heated to 80 °C for 1 hour. The reaction mixture was cooled to room temperature, and then filtered. The collected material was chromatographed on silica with 0% to 50% EtOAc in CH2CI2, providing tert-butyl 4-(7-bromo-4-oxo-4H-pyrido[l,2-a]pyrimidin-2-yl)piperazine-lcarboxylate (130 mg, 64%). MS m/z 409.4 [M+H]+ [001336] Step B: The intermediate (0.3 mmol) from Step A was combined with 3-fluoro-4methoxyphenylboronic acid (77 mg, 0.45 mmol) and tetrakis(triphenylphosphine) palladium(O) (35 mg, 0.03 mmol) in CH3CN (2 mL) and aqueous K2CO3 (IM, 2 mL). The mixture was heated at 80 °C with vigorous stirring under argon for 2 hours. The organic layer was removed and concentrated. The residue was chromatographed on silica with 0% to 50% EtOAc in CH2CI2. [001337] Step C: The Boc-protected intermediate from Step B was dissolved in trifluoroacetic acid (1 mL). After 20 minutes, volatiles were removed. The residue was partitioned in CH2C12 and aqueous K2CO3 (IM). The organic layer was removed and concentrated, affording the title compound as a white powder (30 mg, 17%). M.P. 202-206 °C; MS m/z 355.0 [M+H]+; *H NMR (DMSO-Y 500 MHz): δ 8.93 (1H, d, J = 2.0 Hz), 8.15 (1H, dd, J = 9.3 Hz, 2.3 Hz), 7.67 (1H, dd, J = 12.7 Hz, 2.3 Hz), 7.54 (1H, m), 7.37 (1H, d, J = 9.2), 7.30 (1H, t, J = 8.8 Hz), 5.62 (1H, s), 3.90 (3H, s), 3.57 (4H, m), 2.75 (4H, m), 2.42 (1H, br s).
312
2017204248 22 Jun 2017 [001338] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 29 by substituting the appropriate starting materials, reagents and reaction conditions.
[001339] Example 30 [001340] Preparation of Cpd 276
Figure AU2017204248B2_D0617
[001341] Step A. 7-Bromo-2-chloro-4H-pyrido[l,2-a]pyrimidin-4-one (1.29 g, 5 mmol) was combined with 3-fluoro-4-methoxyphenylboronic acid (850 mg, 5 mmol), tetrakis(triphenylphosphine) palladium(O) (281 mg, 0.25 mmol), CH ;CN (10 mL) and aqueous K2CO3 (IM, 10 mL). The mixture was heated to 80 °C for 6 hours. After cooling to room temperature, the mixture was partitioned in CH2CI2 (75 mL) and H2O (50 mL). The organic layer was collected and concentrated. The residue was chromatographed on silica, eluting with EtOAc (0% to 50%) in CH2CI2, to afford 2-chloro-7-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l ,2a]pyrimidin-4-onc as a white powder (520 mg, 34%). MS m/z 305.0 [M+H]+ [001342] Step B. 2-Chloro-7-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one (180 mg, 0.6 mmol) was combined with 4-aminopiperidine (90 mg, 0.9 mmol) and triethylamine (165 pL, 1.2 mmol) in DMSO (0.75 mL). The mixture was heated to 120 °C for 30 minutes. After cooling to room temperature, CH3CN (2 mL) was added to the mixture. The mixture was filtered. The collected material was washed with CH3CN and dried under vacuum, affording the title compound as a white powder (115 mg, 52%). M.P. 268-283 °C; MS m/z 369.3 [M+H]+; *H
313
2017204248 22 Jun 2017
NMR (DMSO-t/6, 500 MHz): δ 8.94 (1H, d, J = 2.0 Hz), 8.16 (1H, dd, J = 9.3 Hz, 2.3 Hz), 7.68 (1H, dd, J = 12.7 Hz, 2.3 Hz), 7.55 (1H, d, J = 8.5 Hz), 7.39 (1H, d, J = 9.2), 7.30 (1H, t, J = 8.9 Hz), 5.70 (1H, s), 5.20 (2H, br), 4.36 (2H, br), 3.92 (3H, s), 3.04 (3H, m), 1.87 (2H, m), 1.32 (2H, m).
[001343] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 30 by substituting the appropriate starting materials, reagents and reaction conditions.
[001344] Example 31 [001345] Preparation of Cpd 85
Figure AU2017204248B2_D0618
[001346] Part 1, Step A: To a suspension of MgCl2 (2.85 g, 30 mmol) in acetonitrile (27 mL) at 0 °C was added dropwise diethyl malonate (3.4 mL, 30 mmol) and triethylamine (8.3 mL, 60 mmol). The mixture was stirred at 0 °C for 30 minutes. 3,4-dimethoxybenzoyl chloride (5.0 g, 25 mmol) was then added portionwise. The mixture was allowed to stir at room temperature overnight, after which it was treated with IN HC1, extracted with ether, dried and evaporated. The residue was purified on silica with ethyl acetate (5% to 40%) in hexanes to give dimethyl 2(3,4-dimethoxybenzoyl)malonate (7.38 g, 100%). MS m/z 297.1 [M+H]+.
[001347] Part 1, Step B: To a solution of dimethyl 2-(3,4-dimethoxybenzoyl)malonate (2.96 g, 10 mmol) in POC13 (9.4 mL, 100 mmol) at room temperature was added DIPEA (2.75 mL, 16.7 mmol) dropwise. The mixture was then stirred at 100 °C for 3 hours. POC13 was removed under vacuum and the residue was treated with ice-water and extracted with ether. The organic layer was washed with IN HC1, dried and evaporated. The residue was purified on silica with ethyl acetate (5% to 50%) in hexanes to give the title compound (2.0 g, 64%). MS m/z 282.9 [M+H]+.
314
2017204248 22 Jun 2017 ch3cn
Figure AU2017204248B2_D0619
[001348] Part 2: To a solution ofLDA (1.5 M, 13.3 mL, 20 mmol) in THF (15 mL) at -78 °C was added dropwise a solution of 2,5-difluoropyridine (1.15 g, 10 mmol) in THF (10 mL). The temperature was then allowed to rise to room temperature, and the mixture was stirred at room temperature for 2 hours before the reaction was quenched with aqueous NH4C1. The mixture was extracted with ethyl acetate, dried, and evaporated. The residue was purified on silica with ethyl acetate (5% to 50%) in hexanes to give 2-(5-fluoropyridin-2-yl)acetonitrile (0.8 g, 59%). MS m/z 137.0 [M+H]+.
Figure AU2017204248B2_D0620
[001349] Part 3, Step A: To a solution of 2-(5-fluoropyridin-2-yl)acetonitrile (44 mg, 0.325 mmol) in DMF (0.5 mL) was added 60% NaH (20 mg, 0.325 mmol). The mixture was stirred at room temperature for 10 minutes and then treated with dimethyl 2-(chloro(3,4dimethoxyphenyl)methylene)malonate (102 mg, 0.325 mmol). The mixture was stirred for 15 minutes, and the reaction was quenched with saturated NH4CI solution. The mixture was filtered. The solid was washed with water and used directly in the next step without further purification.
[001350] Part 3, Step B: The crude solid from Step A was treated with TFA (2.0 mL) and water (0.2 mL). The mixture was stirred at 100 °C overnight. The solvent was then removed under vacuum and the crude product was used in the next step without further purification.
[001351] Part 3, Step C: The crude product from Step B was heated with piperazine (86 mg, 1.0 mmol) in DMSO (1.0 mL) at 120 °C overnight. Removal of the solvent by N2 followed by
315
2017204248 22 Jun 2017 purification over silica with methanol (10%) in dichloro methane provided the title compound (30 mg, 25%). M.P. 199-202 °C; MS m/z 391.2 [M+H]+; *H NMR (500 MHz, CDC1?) δ: 8.60 (1H, d, J = 2.2 Hz), 7.98 (1H, d, J= 9.8 Hz), 7.59 (1H, dd, J= 9.5, 2.5 Hz), 7.20 (1H, dd, J = 8.5, 2.2 Hz), 7.12 (1H, d, J= 2.2 Hz), 6.93 (1H, d, J= 8.2 Hz), 6.52 (1H, s), 3.89 (3H, s), 3.88 (3H, s), 3.23-3.21 (4H, m), 3.05-3.03 (4H, m).
[001352] Example 32 [001353] Preparation of Cpd 91
Figure AU2017204248B2_D0621
[001354] Step A: To a solution of 2-(5-fluoropyridin-2-yl)acetonitrile (0.78 g, 5.7 mmol) in MeOH (15 mL) was added trimethysilyl chloride (4.4 mL, 34.4 mmol) dropwise. The mixture was stirred at 50 °C overnight. Organic volatiles were removed under vacuum and the residue was partitioned between ether and aqueous sodium bicarbonate. The aqueous layer was extracted with ether. The ether extractions were combined, dried and evaporated to give methyl 2-(5-fluoropyridin-2-yl)acetate as an oil (0.9 g, 93%), which was used without further purification. MS m/z 170.1 [M+H]+.
[001355] Step B: Following the procedure in Example 31, Part 3, Step A, methyl 2-(5fluoropyridin-2-yl)acetate (0.34 g, 2.0 mmol), 60% NaH (176 mg, 4.4 mmol) and dimethyl 2(chloro(3,4-dimethoxyphenyl)methylene)malonate (0.69 g, 2.2 mmol, prepared in Example 31,
316
2017204248 22 Jun 2017
Part 1, Step B) in DMF (3.0 mL) provided the desired dimethyl 2-(3,4-dimethoxypheny 1)-7fluoro-4-oxo-4//-quinolizine-l,3-dicarboxylate (0.2 g, 24%). MS m/z 416.1 [M+H]+.
[001356] Step C: A solution of dimethyl 2-(3,4-dimethoxyphenyl)-7-fluoro-4-oxo-4//quinolizine-l,3-dicarboxylate (0.2 g, 0.48 mmol) in methanol (6.0 mL) was treated with aqueous LiOH (2.0 N, 2.0 mL, 4.0 mmol) and stirred at 90 °C for 2 hours. Aqueous workup followed by evaporation provided a dark residue, which was treated with TFA (2.0 mL) and water (0.2 mL) and stirred at 100 °C for 1 hour. Removal of the solvents by N2 followed by chromatography with ethyl acetate (25% to 75%) in hexanes provided 2-(3,4-dimethoxyphenyl)-7-fluoro-4/7quinolizin-4-one (30 mg, 21%). MS m/z 300.2 [M+H]+.
[001357] Step D: A solution of 2-(3,4-dimethoxyphenyl)-7-fluoro-4//-quinolizin-4-one (30 mg, 0.1 mmol), LSj-2-mcthyl piperazine (30 mg, 0.3 mmol) and K2CC>3 (27 mg, 0.2 mmol) in DMSO (0.2 mL) was stirred at 120 °C for 48 hours. Removal of the solvents by N2 followed by purification by dichloromethane and methanol (10%) provided the title compound (24 mg, 63%). M.P. 243-245 °C; MS m/z 380.2 [M+H]+; *H NMR (500 MHz, CDC13) δ: 8.52 (1H, d, J = 2.2 Hz), 7.46 (1H, d, J= 9.8 Hz), 7.30 (2H, dt, J= 10.4, 2.2 Hz), 7.22 (1H, d, J= 1.9 Hz), 6.98 (1H, d, J = 8.5 Hz), 6.84 (2H, s), 3.96 (3H, s), 3.95 (3H, s), 3.58-3.54 (2H, m), 3.50 (1H, s), 3.21-3.19 (1H, m), 3.12-3.04 (2H, m), 2.85-2.80 (1H, m), 2.49 (1H, t, J= 11.1 Hz), 1.20 (3H, d, J = 6.6 Hz).
317
2017204248 22 Jun 2017 [001358] Example 33 [001359] Preparation of Cpd 106 o I ^YBr Y^CO2Bu‘ fAN LHMDS fAN Pd2(dba)3
DavePhos toluene
Figure AU2017204248B2_D0622
[001360] Step A: To a mixture of Pd2(dba)3 (0.55 g, 0.6 mmol) and DavePhos (0.50 g, 1.26 mmol) in toluene (40 mL) at room temperature under an argon atmosphere was added a solution of LHMDS in hexane (1.0 M x 50 mL, 50 mmol) dropwise. The mixture was stirred for 10 minutes and then cooled to -10 °C, into which tert-butyl acetate (6.2 mL, 46 mmol) was added and stirred for another 10 minutes. 2-Bromo-5-fluoropyridine (3.52 g, 20 mmol) was then added portionwise. Upon completion of the addition, the temperature was allowed to rise to room temperature and the mixture was stirred for another 1 hour. The reaction was then quenched by saturated NH4C1 solution. Aqueous workup followed by chromatography with ethyl acetate (0% to 20%) in hexanes provided te/V-butyl 2-(5-fluoropyridin-2-yl)acetate (2.6 g, 62%).
[001361] Step B: Following the procedure in Example 31 Part 3, Step A, tert-butyl 2-(5fluoropyridin-2-yl)acetate, 60% NaH (80 mg, 2.0 mmol) and dimethyl 2-(chloro(3,4dimethoxyphenyl)-methylene)malonate (0.32 g, 1.0 mmol, prepared in Example 31, Part 2, Step B) in DMF (1.0 mL) provided 1 -tert-butyl 3-methyl 2-(3,4-dimethoxyphenyl)-7-fluoro-4-oxo4H-quinolizinc-l,3-dicarboxylatc. The crude solid was used directly in the next step without purification.
318
2017204248 22 Jun 2017 [001362] Step C: Following the procedure in Example 31 Part 3, Step B, The crude solid from Step B, TFA (5 mL) and water (2 mL) provided 2-(3,4-dimcthoxyphcnyl)-7-lluoro-4//quinolizin-4-one (145 mg, 48%). MS m/z 300.2 [M+H]+.
[001363] Step D: Following the procedure in Example 31 Part 3, Step C, 2-(3,4dimethoxyphenyl)-7-fluoro-4/f-quinolizin-4-one (75 mg, 0.25 mmol) and piperazine (75 mg, 0.87 mmol) in DMSO (0.5 mL) provided the title compound (30 mg, 33%). M.P. 170-172 °C; MS m/z 366.1 [M+H]+; *H NMR (500 MHz, CDC13) δ: 8.53 (1H, d, J= 2.2 Hz), 7.46 (1H, d, J= 9.5 Hz), 7.32-7.27 (2H, m), 7.22 (1H, d, J= 1.9 Hz), 6.97 (1H, d, J = 8.5 Hz), 6.84 (2H, s), 3.98 (3H, s), 3.95 (3H, s), 3.25-3.20 (4H, m), 3.13-3.07 (4H, m).
[001364] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 33 by substituting the appropriate starting materials, reagents and reaction conditions.
[001365] Example 34 [001366] Preparation of Cpd 245
Figure AU2017204248B2_D0623
GS2CO3, Gul 2-nicotinic acid
EtOOCCHzCOOBu'
1) NaOH, MeOH,
Figure AU2017204248B2_D0624
Figure AU2017204248B2_D0625
dioxane, 90 °C
Figure AU2017204248B2_D0626
Figure AU2017204248B2_D0627
K2CO3
ACN
100 °C
2) TFA/H2O,
100 °C
Figure AU2017204248B2_D0628
319
2017204248 22 Jun 2017 [001367] Step A: A mixture of 5-bromo-2-iodopyridine (2.84 g, 10 mmol), teri-butyl ethyl malonate (3.76 g, 20 mmol), CS2CO3 (9.77 g, 30 mmol), Cui (0.19 g, 1.0 mmol) and 2-nicotinic acid (0.246 g, 2.0 mmol) in dioxane (20 mmol) was stirred at 90 °C overnight under nitrogen atmosphere. The mixture was then treated with water, extracted with ethyl acetate, dried and evaporated. The residue was dissolved in MeOH (100 mL) and water (40 mL) and NaOH (1.2 g, 30 mmol) were added. The mixture was stirred at room temperature for 3 hours, then acidified with IN HC1 to pH 4, extracted with ethyl acetate, dried and chromatographed with ethyl acetate (10% to 50%) in hexanes to give tert-butyl 2-(5-bromopyridin-2-yl)acetate (1.2 g, 44%).
[001368] Step B: Following the procedure in Example 33, Step B and C, tert-butyl 2-(5bromopyridin-2-yl)acetate (0.54 g, 2.0 mmol) was treated withNaH (60% in mineral oil, 0.16 g, 4.0 mmol) in DMF (2.0 mL) followed by reaction with 2-(chloro(3,4dimethoxyphenyl)methylene)malonate (2.0 mmol). Deprotection and decarboxylation in TFA (5.0 mL) and water (2.0 mL) at 100 °C afforded 7-bromo-2-(3,4-dimethoxyphenyl)-4/7quinolizin-4-one (0.17 g, 68%). MS m/z 360.1 [M+H]+, 362.0 [M+2+H]+.
[001369] Step C: A mixture of 7-bromo-2-(3,4-dimethoxyphenyl)-4/f-quinolizin-4-one (0.17 g, 0.47 mmol), tert-butyl 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridinel(2/7)-carboxylate (0.18 g, 0.57 mmol), PdCfdppf (38 mg, 0.047 mmol), K2CO3 (2.0 Μ x 0.75 mL, 1.5 mmol) in acetonitrile (1.5 mL) was stirred at 100 °C for 16 hours. The mixture was then treated with water, extracted with dichloromethane, dried and chromatographed with ethyl acetate (20% to 100%) in dichloromethane to give tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo47f-quinolizin-7-yl)-5,6-dihydropyridine-l(2/Z)-carboxylate (0.16 g, 73%). MS m/z 463.3 [M+H]+.
[001370] Step D: tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4/f-quinolizin-7-yl)-5,6dihydropyridine-1 (2//)-carboxylatc (80 mg, 0.17 mmol) was treated with dichloromethane (1.0 mL) and TFA (1.0 mL) and stirred at room temperature for 1 hour. The mixture was then evaporated, treated with dichloromcthanc and washed with saturated aqueous sodium bicarbonate solution. The organic layer was dried and evaporated to give the title compound (63 mg, 100%). M.P. 174-176 °C; MS m/z 363.2 [M+H]+; *H NMR (500 MHz, CDC13) δ: 9.04 (1H, s), 7.53 (1H, dd, J= 9.2, 1.9 Hz), 7.47 (1H, d, J= 9.2 Hz), 7.31 (1H, dd, J= 8.5, 2.2 Hz), 7.23 (1H, d, J= 2.2 Hz), 6.99 (1H, J = 8.2 Hz), 6.86 (2H, br s), 6.36 (1H, s), 3.99 (3H, s), 3.97 (3H, s), 3.67-3.60 (2H, m), 3.24-3.13 (2H, m), 2.62-2.55 (2H, m), 2.21 (1H, br s).
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2017204248 22 Jun 2017 [001371] Example 35 [001372] Preparation of Cpd 249
Figure AU2017204248B2_D0629
Figure AU2017204248B2_D0630
[001373] Following the procedure in Example 23, 2-(3,4-dimethoxyphenyl)-7-(l,2,3,6tetrahydropyridin-4-yl)-4H-quinolizin-4-one (30 mg, 0.083 mmol), sodium triacctoxyborohydridc (53 mg, 0.25 mmol) and aqueous solution of formaldehyde (30%, 14 pL,
0.166 mmol) in 10% methanol in dichloro methane (1.0 mL) gave the title compound (26 mg, 83%). M.P. 194-196 °C; MS m/z 377.2 [M+H]+; *H NMR (500 MHz, CDC13) δ: 9.03 (1H, s), 7.51-7.44 (2H, m), 7.29 (1H, dd, J= 8.5, 2.2 Hz), 7.21 (1H, d, J= 1.9 Hz), 6.98 (1H, J= 8.2 Hz), 6.87-6.82 (2H, m), 6.26 (1H, s), 3.98 (3H, s), 3.95 (3H, s), 3.48 (2H, br s), 3.06-2.97 (2H, m), 2.90-2.80 (2H, m), 2.65 (3H, s).
[001374] Example 36 [001375] Preparation of Cpd 306
Figure AU2017204248B2_D0631
B2Pin2
Pd(dppf)CI2, DCM
KOAc
Figure AU2017204248B2_D0632
Dioxane °C, 15h
Figure AU2017204248B2_D0633
[001376] Part 1, Step A: To a solution of 2-(benzyloxy)-4-bromo-6-fluoroaniline (3.74 g, 12.6 mmol) in THF (25 mL), prepared from l,3-difluoro-2-nitrobenzene in 3 steps according to known procedures (W02007/067612), was added PtO2 (0.23 g, 1.0 mmol). After stirring under hydrogen (1 atm, balloon) at room temperature for 23 hours, the mixture was filtered through celite. The filtrate was concentrated to give 2-amino-5-bromo-3-fluorophenol as a brown solid,
321
2017204248 22 Jun 2017 which was used in the next step without further purification. MS m/z 206.1 [M+H]+, 208.0 [M+2+H]+.
[001377] Part 1, Step B: To a solution of the crude 2-amino-5-bromo-3-fluorophenol from Step A in 1,1,1-tricthoxycthanc (10 mL) was added TFA (0.96 mL, 12.6 mmol) at room temperature. After 15 hours, the mixture was neutralized withNa2CO3 and filtered. The filtrated was concentrated and chromatographed with CH2C12 to give 6-bromo-4-fluoro-2methylbenzo[d]oxazole as a tan solid (2.531 g, 88%). MS m/z 230.0 [M+H]+, 232.1 [M+2+H]+.
[001378] Part 1, Step C: A mixture of 6-bromo-4-fluoro-2-methylbenzo[d]oxazole (2.531 g, 11.0 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2-dioxaborolane) (3.087 g, 12.2 mmol), KOAc (3.25 g, 33.2 mmol) and Pd(dppf)Cl2»CH2Cl2 (449 mg, 0.55 mmol) in dioxane (25 mL) was degassed and heated under N2 at 85 °C. After 15 hours, LC-MS indicated disappearance of the starting material and the products as a mixture of boronic acid and boronic pinacol ester in a ratio of ~2/l: boronic acid product: MS m/z 196.1 [M+H]+; pinacol boronic ester product: MS m/z 278.2 [M+H]+. The reaction mixture was concentrated to dryness and used as is in the next step.
Figure AU2017204248B2_D0634
[001379] Part 2, Step A: A mixture of crude boronic pinacol ester/boronic acid from Part 1 (~ g, ~ 4 mmol), 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.792 g, 4.0 mmol, prepared in Example 14, Part 1), Pd(dppf)Cl2»CH2Cl2 (146 mg, 0.20 mmol), K2CO3 (2M, 6.0 mL, 12.0 mmol), and CH3CN (12 mL) was degassed and then heated under N2 at 60 °C for 2.5 hours. The volatiles were removed and the residue was washed with water and CH3CN to give 7-fluoro-2-(4-fluoro-2-methylbenzo[d]oxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a
322
2017204248 22 Jun 2017 grayish solid (1.119 g, 89%). .MS m/z 314.2 [ΜΗ]'. Ή NMR (500 MHz. DMSO-t/fl) δ 8.88 9.01 (1H. nt), 8.39 - 8.48 (1H, m), 8.11 - 8.20 (2H. m), 7.86 - 7.96 (IH, m), 7.21 - 7.29 (I H. m). 2.69 (3H, s').
[001380] Part 2, Step B: A mixture of 7-fluoiO-2-(4-fluoro-2-methylbenzo[d]oxazol-6-yl)-4Hpyridofl ,2-a]pyrimidin-4-one (63 mg, 0.2 mmol) and (S)-2-methylpiperazine (30 mg, 0.3 mmol) in DMA (0.5 mL) was heated at 120 ''C for 15 hours. The volatiles were removed and the residue was chromatographed (10-15% MoOH in CILCb) to give the title compound as a yellow solid (26 mg, 33%). M.P. 207-209 QC; MS m/z 394.3 [MHlf; *Η NMR (500 MHz. DMSOY) δ 8.39 (1 H„ d, J - 1.3 Hz), 8.20 - 8.24 (IH, m), 8.05 - 8.16 (2H, m), 7.71 - 7.77 (1H, m), 7.11 (1H, s). 3.56 - 3.68 (2H, in), 2.98 - 3.06 (IH, m), 2.78 - 2.88 (2H, m), 2.68 (3H, s), 2.62 - 2.68 (I H, m), 2.27 - 2.34 (1H, m), 1.06 (3H, d, J - 6.3 Hz).
[0013811 As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 36 by substituting the appropriate starting materials, reagents and reaction conditions.
1001382] Example 37 [001383J Preparation of Cpd 443
:t oA
+ bocn'
O
Pd(dppf)Glz K;,COS
Figure AU2017204248B2_D0635
zAGN
6( ' >
/
Figure AU2017204248B2_D0636
Figure AU2017204248B2_D0637
Hoc
Figure AU2017204248B2_D0638
Pd(dppf)C|2
K2CQ3,
AGN, 75 °G
Figure AU2017204248B2_D0639
323
2017204248 22 Jun 2017
J001384] Step A: A mixture of 7~bromO2-(3i4-dimeth(>xyphenyl)-4Hpyridg[ 1,2-alpyriniidin· enol n acetonitrde (4 mL) was degassed and then heated under N2 ai. 60 C overnight. The volatiles were removed and the residue was chromatographed (30% EtOAc/CHjCL) to give tcrt-butyl 4-(2-(3.4-djnK4hoxyphcuyP>-4-oxto-4l-l-pyndo[ 1,2 [001385] Si ep B, To the product iron- Si ep Λ (4(10 mu degassed and then heated at 75 C overnight. The mixture was washed with waler and (. IhCN.
The volatiles were removed and the residue was chromatographed with 0-2% MeC-H in (. ILCi jvrimidin-?-vFi-5,6ig, 65%). MS m/z 458..5 [Mun .
[001386| Step C: Follow ing the procedure in Example 22, Step D. the above product from Step
B (327 mg. 0,72 mmol) and HO in dioxane (4 M. 5 mL) provided the tide compound as an offwhite solid (194 mg. 76%). M.P. 200-203 °C: MS m/z 358.2 [M+H]’: fH NMR (DMSO-Λ. 500
MHz) δ 8.8() (d, J::: 1.6 Hz, IH). 8.72 (d. J··· 1.6 Hz, 111), 8.30-8.26 (m. 2H). 8.22 (d. J - 1.6 Hz,
2,96 (m, 2H). 2.43-2.39 (m, 2H).
[001387] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 37 by substituting the appropriate starting materials, reagents and reaction conditions.
324
2017204248 22 Jun 2017 [001388] Example 38 [001389] Preparation of Cpd 342
Figure AU2017204248B2_D0640
[001390] Step A: Following the procedure in Example 9, Step G, 2-amino-5-bromo-pyridine (415 mg, 2.4 mmol), ethyl 3-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (520 mg, 2.0 mmol) and PPTs (25 mg, 0.1 mmol) gave 2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)7-bromo-4H-pyrido[l,2-a]pyrimidin-4-one as a yellow solid (498 mg, 67%). MS m/z 370.2 [M+H]+, 372.2 [M+2+H]+; *H NMR (500 MHz, DMSO-d6) δ 8.99 - 9.09 (1H, m), 8.53 - 8.62 (1H, m), 8.08 - 8.18 (1H, m), 7.68 - 7.75 (1H, m), 7.55 - 7.63 (1H, m), 7.01 - 7.09 (1H, m), 2.74 (3H, s), 2.44 (3H, s).
[001391] Step B: Following the procedure in Example 22, Step C, 7-bromo-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (498 mg, 1.3 mmol), tert-butyl 4-(4,4,5,5-tetramethyl-l ,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l (2H)carboxylate (482 mg, 1.56 mmol), potassium carbonate (538 mg, 3.9 mmol) and Pd(dppf)C12 (95 mg, 0.13 mmol) in acetonitrile (3 mL) gave tert-butyl 4-(2-(4,6-dimethylpyrazolo[l,5-a]pyrazin2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate as an offwhite solid (0.57 g, 84%). MS m/z 473.5 [M+H]+; *H NMR (500 MHz, DMSO-c/6) 5 8.80 - 8.89 (1H, m), 8.53 - 8.61 (1H, m), 8.23 - 8.32 (1H, m), 7.71 - 7.79 (1H, m), 7.55 - 7.61 (1H, m), 6.99 325
2017204248 22 Jun 2017
7.04 (I H. m). 4.03 - 4.14 (2H, m), 3.55 - 3.65 (2H, m), 2.74 (3H, s), 2.53 - 2.58 (2H, m), 2.43 (3H, s), 1.44(9H, s).
10013921 Step C: Following the procedure in example 22. Step D, tert-butyl 4-(2-(4,6dimethylpyrazolo[L5-a]pyrazin-2-yl)-4-oxo~4H-pyrido[l,2-a]pyrimidin-7-yl)-5,6dihydropyridine-1 (2I I[-carboxylate, HC1 (2. ml... 4N in dioxane) in CFLCL (4 ml.) gave the title compound as an off-white solid (234 mg, 84%). M.P. 207-210 °C; MS m/z 373.4 [M+H] \ Ή NMR (500 MHz. DMSO-cA,) δ 8.80 (IH, s). 8.55 - 8.60 (I Η. τη). 8.27 - 8.32 (1H. m). 7.73 - 7.78 (1H, m), 7.58 - 7.63 (ί H, m), 7.00 - 7.05 (1H, m), 6.57 - 6.65 (IH, m), 3.42 - 3.47 (211, m), 2.93 2.98 (211, in). 2.72 - 2.76 (2H, m). 2.44 (3H, s). 2.39 (3H. s).
1001393] As shown in Table 1 below, additional compounds disclosed herein may be prepared according lo Example 38 by substituting the appropriate starting materials, reagents and reaction conditions.
[001394] Example 39
1001395] Preparation of Cpd 629
Figure AU2017204248B2_D0641
Figure AU2017204248B2_D0642
o
Figure AU2017204248B2_D0643
HCHO
NaBH(OAc)3
DCE
Figure AU2017204248B2_D0644
10013961 A mixture of (R)-2-(4-ethy1-6-methylpyrazolo[ 1,5-a]pyrazin-2-yl)-7-(3methylpiperazin-1 -yl)-4H-pyrido[l,2-a]pyrimidin-4-one (48 mg, 0.12 mmol, prepared according to Example 9), formaldehyde (0.039 ml, 0.48 mmol, 37% in water) and sodium triaectoxyborohydride (51 mg, 0.24 mmol) was stirred in dichloromclhanc (1 mL) for 1 hour. The reaction mixture was diluted with dichioromethane and neutralized with sodium bicarbonate.
The organics were dried, concentrated and chromatographed with 0-5% MeOH/CH>Ch to provide the title compound as a yellow solid (45 mg, 90%). M.P. 257-259 °C; MS m/z 418.5 [Μ+ΗΓ; ’ll NMR (500 MHz. DMSO-c/,) δ 8.56 (I H, s), 8.25 - 8.26 (1H. m), 8.12 - 8.14 (1 H. m). 7.72 - 7.74 (1H, m). 7.55 (IH, s). 6.95 (1H, s), 3.60 - 3.65 (2H. m), 3.08 (2H. q, J - 7.6 Hz).
2.84 - 2.89 (2H, m). 2.43-2.52 (2H, m. obscured by DMSO-iL), 2.45 (3H. s). 2.29 - 2.31 0 H, m), 2.24 (3H, s), 1.33 (3IL t, .7 - 7.6 Hz ), 1.91 (3H, d. 7 - 6.2 Hz).
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2017204248 22 Jun 2017
1001397] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 39 by substituting the appropriate starling materials, reagents and reaction conditions.
1001398] Example 40 |001399] Preparation of Cpd 625 and Cpd 626
Eto
Cl
Figure AU2017204248B2_D0645
NaOMe
Figure AU2017204248B2_D0646
MeO o
LOA
Figure AU2017204248B2_D0647
EtOU •eflux
NH
O
Figure AU2017204248B2_D0648
A O
Figure AU2017204248B2_D0649
DMA
PPTs
130 °C, eh
Figure AU2017204248B2_D0650
|001400] Step A: A mixture of ethyl 4-chloro-6-metny1pyrazolo[ 1,5-alpyrazine-2-carboxylate (2.39 g, 10 mmol, prepared in Example 9, Step C) and sodium methoxide (60 mL., 30 mmol, 0.5 M in MeOH) was stirred at 30 °C for 1 hour. The mixture was concentrated to remove most of the methanol, diluted with water and neutralized with 6 N HC1. A white solid precipitated out and was filtered, washed with water and CILCN. and dried to give ethyl 4-methoxy-6methylpvrazolo[ 1,5-a]pyrazine-2-carboxylate as a while solid (1,387 g. 62%). MS m/z 222.2 [M-CTh-i-Hf,
10014011 Step B: Following the procedure in Example 9, Step E. tert-butyl acetate (1,6 mL, 12.3 mmol), LDA (10,2 mL, 15.4 mmol, 1.5 M in THF) and ethyl 4-methoxy-6methylpyrazolof 1,5-a]pyrazine-2-carboxylate (1.387 g. 6.2 mmol) gave tert-butyl 3-(4-methoxy6-methylpyrazolo[L5-a]pyrazin-2-y!)-3-oxopropanoate as an oil (1.35 g. 72%). MS m/z 306.3
327
2017204248 22 Jun 2017 [M+H]+; *H NMR (500 MHz, DMSO-t/6) δ 8.35 (1H, s), 7.27 (1H, s) 4.05 (3H, s), 4.01 (2H, s), 2.36 (3H,s), 1.38 (9H, s).
[001402] Step C: : Following the procedure in Example 9, Step F, tert-butyl 3-(4-methoxy-6methylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (1.35 g, 4.43 mmol) and EtOH (10 mL) gave ethyl 3-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate as a yellowish solid, which was used directly in the next step without further purification. MS m/z 278.3 [M+H]+.
[001403] Step D: A mixture of ethyl 3-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-3oxopropanoate (-4.43 mmol), 2-amino-5-fluoro-pyridine (0.596 g, 5.3 mmol), PPTs (100 mg, 0.4 mmol) and tetraethyl orthosilicate (1.0 mL, 4.43 mmol) in m-xylene (2.2 mL) was heated at 130 °C. After 15 hours, the mixture was cooled to room temperature and washed with CH2CI2 to give 7-fluoro-2-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4one as a yellow solid (1.015 g, 70%). MS m/z 326.3 [M+H]+.
[001404] Step E: A mixture of 7-fluoro-2-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)4H-pyrido[l,2-a]pyrimidin-4-one (98 mg, 0.30 mmol) and N-methyl-piperazine (150 mg, 1.5 mmol) in DMA (0.6 mL) was heated at 130 °C. After 6 hours, the mixture was cooled to room temperature and chromatographed with 5% MeOH/ CH2CI2 and 10% 3.5 N NH? in MeOH/ CH2CI2 to give Cpd 625 (12 mg, 10%) and Cpd 626 (8.5 mg, 7%), each as yellow solids.
[001405] Cpd 625: M.P. 242-244 °C; MS m/z 406.5 [M+H]+; *H NMR (500 MHz, DMSO-iZ6) δ 8.33 - 8.38 (1H, m), 8.24 - 8.30 (1H, m), 8.09 - 8.15 (1H, m), 7.70 - 7.74 (1H, m), 7.34 - 7.39 (1H, m), 6.92 - 6.96 (1H, m), 4.07 (3H, s), 3.21 - 3.29 (4H, m), 2.5 (4H, m, obscured by DMSOd6\ 2.37 (3H, s), 2.26 (3H, s).
[001406] Cpd 626: M.P. 280-283 °C; MS m/z 392.4 [M+H]+; *H NMR (500 MHz, DMSO-<4) δ 11.4 (1H, s), 8.24 - 8.28 (1H, m), 8.09 - 8.14 (1H, m), 7.70 - 7.75 (1H, m), 7.63 - 7.67 (1H, m), 7.48 (1H, s), 6.88 (1H, s), 3.22 - 3.29 (4H, m), 2.51 - 2.56 (4H, m), 2.24 - 2.30 (3H, s), 2.15 (3H, s).
328
2017204248 22 Jun 2017 [001407] Example 41 [001408] Preparation of Cpd 688
Figure AU2017204248B2_D0651
[001409] Step A: A mixture of ethyl 4-chloro-6-methylpyrazolo[l,5-a]pyrazine-2-carboxylate (0.956 g, 4 mmol, prepared in Example 9, Step C), dimethylamine (2.1 mL, 4.2 mmol, 2.0 M in THF) and Et3N (0.84 mL, 6.0 mmol) was heated at 60 °C. After 15 hours, the mixture was concentrated, the residue was dissolved in EtOAc, washed with water, dried and concentrated to give ethyl 4-(dimethylamino)-6-methylpyrazolo[l,5-a]pyrazine-2-carboxylate as an off-white solid (0.99 g, 99%). MS m/z 249.3 [M+H]+.
[001410] Step B: To a solution of ethyl 4-(dimethylamino)-6-methylpyrazolo[l,5-a]pyrazine-2carboxylate (0.99 g, 4.0 mmol) and EtOAc (1.95 mL, 20 mmol) in THF (30 mL) at -20 °C was added LiHMDS (11.1 mL, 10 mmol, 0.9 M in THF). After 1 hours, the mixture was quenched with saturated NH4C1, extracted with EtOAc. The organics were concentrated and chromatographed with 2% MeOH/DCM to give ethyl 3-(4-(dimethylamino)-6methylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate as a pale yellow oil (0.48 g, 40%). MS m/z 291.3 [M+H]+; *H NMR (500 MHz, DMSO-<4) δ 7.73 (1H, s), 7.05 (1H, s), 5.43 (2H, s), 3.96 (2H, q, J= 7.0 Hz), 3.28 (6H, s), 2.20 (3H, s), 1.16 (3H, t, J = 7.0 Hz)
329
2017204248 22 Jun 2017 [001411] Step C: Following the procedure in Example 40, Step D, ethyl 3-(4-(dimethylamino)6-methylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (0.48 g, 1.6 mmol), 2-amino-5-fluoropyridine (179 mg, 1.6 mmol), PPTs (40 mg, 0.16 mmol) and tetraethyl orthosilicate (0.36 mL, 1.6 mmol) in m-xylene (0.8 mL) gave 2-(4-(dimethylamino)-6-methylpyrazolo[l,5-a]pyrazin-2yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one as a yellow solid (0.39 g, 72%). MS m/z 339.2 [M+H]+; *HNMR (500 MHz, DMSO-</6) δ 8.92 - 9.00 (1H, m), 8.06 - 8.18 (1H, m), 7.91 - 7.94 (1H, m), 7.85 - 7.91 (1H, m), 7.55 - 7.61 (1H, m), 6.98 - 7.08 (1H, m), 3.36 (6H, s), 2.25 (3H, s). [001412] Step D: A mixture of 7-fluoro-2-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)4H-pyrido[l,2-a]pyrimidin-4-one (50 mg, 0.15 mmol) and piperazine (86 mg, 1.0 mmol) in DMA (0.5 mL) was heated at 150 °C. After 2 hours, the mixture was cooled to room temperature and washed with CH3CN to give the title compound as a yellow solid (60 mg, 98%). M.P. 245-248 °C; MS m/z 405.4 [M+H]+; *H NMR (500 MHz, DMSO-</6) δ 8.23 - 8.28 (1H, m), 8.06 - 8.11 (1H, m), 7.89 - 7.92 (1H, m), 7.69 - 7.75 (1H, m), 7.50 - 7.55 (1H, m), 6.92 (1H, s), 3.35 (6H, s), 3.12 - 3.19 (4H, m), 2.87 - 2.92 (4H, m), 2.80 (1H, s), 2.24 (3H, s).
[001413] Example 42 [001414] Preparation of Cpd 694
Figure AU2017204248B2_D0652
Figure AU2017204248B2_D0653
[001415] Step A: To a mixture of 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7(piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (78 mg, 0.2 mmol, prepared according to the
330
2017204248 22 Jun 2017 procedure in Examples 38 and 24) and 2.2-dimethyI-l,3-dioxan-5-onc (72 mg, 0.5 mmol, 90% tech grade) in dichloroethane (1 mL) were added NaBH(OAc).? (106 mg, 0.5 mmol) and I drop of AcOH. The mixture was stirred at 60 °C. After 1 hour, the mixture was quenched with saturated NaHCO.u extracted with CbhCb, concentrated and chromatographed (2-5% MeOH/ CTbCl·) to give 7-( I -(2,2-dimethyl-1,3-dioxan-5-yl)piperidin-4-yl)-2-(4-ethyi-6methylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrjmidin-4-onc as a white solid (70 mg, 70%). MS m/z 503.5 [MHI] ’l l NMR (500 MHz, DMSO-Λ) δ 8.75 - 8.82 (IH, m), 8.54 8.61 (HI. m), 8.00 - 8.10 (1H, m), 7.72 - 7.79 (HI, m), 7.58 - 7.63 (I H, m), 6.99 - 7.03 (1H, m),
3.86 - 3.95 (2H. m), 3.71 - 3.81 (2H, in), 3.06 - 3.15 (2H, m). 3.00 - 3.06 (211, m), 2.70 - 2.80 (1H, m), 2.53 - 2.59 (HL m), 2.45 (3H, s), 2.28 - 2.38 (2H. m), 1.82 - 1.90 (2H. in), 1.59 - 1.71 (2H, in), 1.32 - 1.37 (6H, m), 1.27 (3H, s).
[001416] Step B: To a mixture of 7-( l-(2.2-dimcthyl-1.3-dioxan-5-yl)piperidin-4-yl)-2-(4ethyl-6-mcthylpyrazoIo[ 1,5-a|pyrazin-2-yl)-4H-pyrido[ 1,2-a]pyrimidin-4-onc (50 mg, 0.1 mmol) in THF·' (10 mL) was added HC1 (1.3 mL, 2.6 mmol, 2 N). The mixture was stirred at room temperature. After 15 hours, the mixture was treated with excess of7N Ni l? in MeOH, concentrated and chromatographed (10% 2.5 N Nil? in MeOH/ CH2Cb) to give the title compound as a yellow solid (45 mg, 97%). M.P. 228-230 CC; MS m/z 463.6 [MH-lf; 'H NMR (500 MHz. DMSO-Λ) δ 8.77 - 8.84 (1H, m), 8.54 - 8.6 i (1H, m), 8.02 -8.10(1 H, m), 7.90 7.94 (1H, in), 7.74 - 7.79 (1H. m). 7.57 - 7.63 (1H. in). 6.99 - 7.05 (1H, m), 4.21 - 4.31 (2H, m). 3.42 - 3.59 (4H. m). 3.10 (2H, q, J = 7.5 Hz). 2.89 - 3.00 (2H, m), 2.70-2.72 (1H, m), 2.57 - 2.62 (llLm), 2.45(311, s), 1.79 - 1.80(211, m), 1.63 - 1.75 (2H, m). 1.34(311,t. ./ 7.5 Hz).
[001417] Example 43 [001418| Preparation of Cpd 662
Figure AU2017204248B2_D0654
.5.5
2017204248 22 Jun 2017 [001419] A mixture of 2-(4,6-dimcthyJpyrazolo[ L5-a]pyrazin-2-yl)~7-(piperazin-1 -yi)-4Hpyrido[l,2-a]pyrimidin-4-one (56 mg, 0.15 mmol, prepared according to the procedure in Example 24), I-bromo-2-fluoroethane (23 mg, 0.18 mmol) and K2CCh (23 mg, 0.18 mmol) in DMF (1 mL) was heated at 80 C. Aller 7 hours, the mixture was cooled to room temperature and chromatographed (5% McOIl/ClLCb) to give the title compound as a yellow solid (29 mg. 44%). M.P. 197-199 °C; MS m/z 421.4 [M+H]’: '11 NMR (500 MHz, DMSO-4) δ 8.79 - 8.85 (IH, m), 8.55 - 8.60 (J H, m). 8.05 -8.11(1 II, m), 7.73 - 7.80 (1H, m), 7.57 - 7.62 (1H, m), 7.02 (1H, s). 4.59 - 4.65 (1H, m), 4.48 - 4.55 (1H, m), 3.01 - 3.07 (2H, mi, 2.69-2.75 (1H. m), 2.74 (3H. s), 2.68 - 2.72 (1II, m), 2.62 - 2.67 (1H, rn), 2.43 (3H, s), 2.12 - 2.21 (2H, in). 1.85-1.88 (211, m), 1.70-1.88(211, m).
10014201 As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 43 by substituting the appropriate starling materials, reagents and reaction conditions.
[001421] Example 44 [001422| Preparation ol'Cpd 798
Figure AU2017204248B2_D0655
[001423] Part 1, Step A; To a solution of 2,6-dirnethylpiperidin-4-one (1.27 g, 10 mmol, a mixture of trans/cis isomers in a ratio of- 1.51) and di-tert-butyl dicarbouaie (2.40 g, 11 mmol) in ether was added NaOH (11 mL, 11 mmol, 1 N in water). The mixture was stirred at room temperature. After 36 hours, the mixture was extracted with ether. The organics were concentrated and chromatographed (5-30% EtOAc/Hexanes) to give a mixture of tert-butyl 2,6dimethyl-4-oxopiperidine-l-carboxylate as a Tran/cis mixture in a ratio of- 1.2/1 (1.99 g, 87%, clear oil). Upon standing overnight, a solid precipitated from the oil, which was filtered and washed with ether to give the tert-butyl imns-2,6-dimethyl-4-oxopiperidine-1 -carboxylate (0.376 g, 16%)(95% trans by 'll NMR). 'H NMR (500 MHz, CDC1.0 δ 4.33 - 4.45 (2H. m), 2.80 - 2.90
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2017204248 22 Jun 2017 (2H, m), 2.33 - 2.44 (2H, m), 1.50 (9H, s), 1.26 (6H, d, J= 6.9 Hz). The *H NMR is consistent with that of the trans-isomer in a mixture of cis and trans-isomers (US200839454, JOC, 1993, 58, 1109-1117).
[001424] Part 1, Step B: To a solution of the tert-butyl rra/?.s-2,6-dimclhyl-4-oxopiperidine-lcarboxylate (266 mg, 1.17 mmol) in THF (7 mL) at -78 °C was added NaHMDS. After 1 hour, N-Phenyl-bis(trifluoromethanesulfonimide) (0.50 g, 1.4 mmol) in THF (3 mL) was added. The reaction mixture was stirred at room temperature for 2 hours, quenched with saturated NH4CI and extracted with ether. The organics were concentrated and chromatographed with 1% EtOAc/Hexanes to give tert-butyl-trans-2,6-dimethyl-4-(trifluoromethylsulfonyloxy)-5,6dihydropyridine-1 (2H)-carboxylate (0.415 g, 98%). *H NMR (500 MHz, CDCI3) δ 5.77 - 5.85 (1H, m), 4.29 - 4.44 (2H, m), 2.81 - 2.90 (1H, m), 2.15 - 2.23 (1H, m), 1.48 (9H, s), 1.37 (3H, d,
J= 6.6 Hz), 1.24 (3H, d, J = 6.6 Hz).
Br
Boc'
K2CO3 j i [001425] Part 2, Step A: Following the procedure of Example 14, Part 2, 7-bromo-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (0.74 g, 2.0 mmol, prepared in Example 38, Step A ), KOAc (590 mg, 6.0 mmol), bis(pincolato)diboron (560 mg, 2.2 mmol), and Pd(dppf)C12»CH2C12 (82 mg, 0.1 mmol) in dioxane (6 mL) provided 2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-ylboronic acid. The crude intermediate was used directly in the next step. MS m/z 336.3 [M+H]+.
[001426] Part 2, Step B: Following the procedure of Example 14, Part 3, Step A, 2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-ylboronic acid (~2 mmol), tert-butyl-trans- 2,6-dimethyl-4-(trifluoromethylsulfonyloxy)-5,6-dihydropyridine333
2017204248 22 Jun 2017 l(2H)-carboxylate (0.415 g, 1.15 mmol), potassium carbonate (3.5 mL, 2.0M) and Pd(dppf)C12· CH2CI2 (82 mg, 0.1 mmol) in acetonitrile (10 mL) provided tert-butyl 4-(2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-trans-2,6dimethyl-5,6-dihydropyridine-l(2H)-carboxylate as a yellow solid (0.5 g, 87%). MS m/z 501.4 [M+H]+.
[001427] Part 2, Step C: Following the procedure in Example 38, Step C, tert-butyl 4-(2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-trans-2,6dimethyl-5,6-dihydropyridine-l(2H)-carboxylate (50 mg, 0.1 mmol) and HC1 in dioxane (4 M, 0.5 mL) provided the title compound as a yellow solid (25 mg, 62%). M.P. 228-231 °C; MS m/z 401.3 [M+H]+; *HNMR (500 MHz, DMSOY6) δ 8.77 - 8.82 (1H, m), 8.54 - 8.58 (1H, m), 8.25 - 8.32 (1H, m), 7.70 - 7.76 (1H, m), 7.57 (1H, s), 7.02 (1H, s), 6.50 - 6.58 (1H, m), 3.64 3.75 (1H, m), 3.08 - 3.18 (1H, m), 2.73 (3H, s), 2.41-2.44 (1H, m), 2.43 (3H, s), 1.99 - 2.08 (1H, m), 1.21 (3H, d, J =6.6 Hz), 1.16 (3H, d, J =6.3 Hz).
[001428] Example 45 [001429] Preparation of Cpd 764
Figure AU2017204248B2_D0656
HCI
Figure AU2017204248B2_D0657
h2n [001430] Step A: Following the procedure in Example 9, Step H, 2-(4,6-dimethylpyrazolo[l,5a]pyrazin-2-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (618 mg, 2.0 mmol), (R)-tert-butyl pyrrolidin-3-ylmethylcarbamate (481 mg, 2.4 mmol) and DMA (2.0 mL) provided (S)-tert-butyl (1-(2-(4,6-dimethylpyr azo lo[l,5-a]pyr azin-2-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7yl)pyrrolidin-3-yl)methylcarbamate (0.90 g, 92%) as a yellow solid. MS m/z 490.5 [M+H]+; *H NMR (500 MHz, DMSOY6) δ 8.50 - 8.59 (1H, m), 7.97 - 8.03 (1H, m), 7.72 - 7.82 (2H, m),
334
2017204248 22 Jun 2017
7.48 - 7.57 (IH. m), 7.04-7.08 (1H, m), 6.87 - 6.94 (I H, m), 3.41 - 3.50 (2H, m), 3.35 - 3.41 (1H, m), 2.97 - 3.16 (3H, m). 2.73 (3H, s), 2.47-2.51 ( HL m, obscured by DMSO- F), 2.43 (3H, s), 2.04 -2.16(1 H, m), 1.71-1.83(1 H, m), 1.39 (9H. s).
[001431| Step B: Following the procedure in Example 38, Step C, (S)-terl-buiyl (1-(2-(4,6dimethylpyrazolofl „5-ajpyrazin-2-yl)-4-oxo-4H-pyrido[! „2-a]pyrimidin-7-yl)pyrrolidin-3yOmethylcarbamatc (0.39 g, 0.8 mmol), HCI (2.0 mL, 4 M in dioxane) and CH2CE (10 mL) provided the title compound as a yellow solid (0.19 g, 62%). M.P. 244-246 °C; MS m/z 390.4 I M < I! | ; 'll NMR (500 MHz, DMSO-%) δ 8.52 - 8.57 (TH, m). 7.96 - 8.03 (111, m), 7.73 - 7.80 (21 f. in), 7.52 (1H, s), 6.90 (1H, s), 3.42 - 3.50 (2H, m). 3.34 - 3.4! (1H, m), 3.10 - 3.18(1 H, m), 2.73 (3H. s), 2.59 - 2.70 (2H„ m), 2.43 (311, s), 2.34 - 2.42 (1H, m), 2.09 - 2.16 (III, m), 1.73 1.82 (HI, m).
1001432] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 45 by substituting the appropriate starting materials, reagents and reaction conditions.
[001433] Example 46 [001434] Preparation of Cpd 294
Figure AU2017204248B2_D0658
Figure AU2017204248B2_D0659
Pd(PPfe)4
K?CO3
CH3CN:H2O °C, 18 h
NBoc
Figure AU2017204248B2_D0660
1) TFA
2) KZCO3
Figure AU2017204248B2_D0661
Figure AU2017204248B2_D0662
10014351 Step A: 2-chloro-7-(3-nuoro-4-mcthoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one (Ί82 mg. 0.6 mmol), prepared according to Example 30, Step A, was combined with tert-butyl 4(4,4,5,5-tctramcihyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydropyridinc-1 (2H)-carboxylatc (222 mg, 0.72 mmol), tetrakis(triphenylphosphine) palladium(O) (67 mg, 0,06 mmol), CH?CN (2 mL) and aqueous K2CO3 (1 M, 2 mL), The mixture was heated at 80 °C tor 18 hours. After cooling to room temperature, the mixture was filtered, providing lert-buiyl 4-(7-(3-iluoro-4335
2017204248 22 Jun 2017 methoxyphenyl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate as a crude product that was used directly in the next step.
[001436] Step B: The tert-butyl 4-(7-(3-fluoro-4-methoxyphenyl)-4-oxo-4H-pyrido[l,2a]pyrimidin-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate from step A was dissolved in TFA (2 mL). After 10 minutes, volatiles were removed with a nitrogen stream. The residue was partitioned in CH2CI2 and aqueous K2CO3 (1 M). The organic layer was loaded onto silica gel, eluting with 0-10% MeOH (3% NH3) in CH2CI2, affording the title compound as a white powder (150 mg, 72%). M.P. 188-192 °C; MS m/z 352.1 [M+H]+; *H NMR (DMSO-i/6, 500 MHz): δ 9.05 (1H, d, J = 2.3 Hz), 8.28 (1H, dd, J = 9.4 Hz, 2.2 Hz), 7.76 (1H, dd, J = 12.7 Hz, 2.3 Hz), 7.70 (1H, d, J = 9.3 Hz), 7.63 (1H, m), 7.33 (1H, t, J = 8.8 Hz), 7.14 (1H, m), 6.44 (1H, s), 3.92 (3H, s), 3.46 (2H, m), 2.91 (2H, m), 2.39 (2H, m).
[001437] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 46 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001438] Example 47 [001439] Preparation of Cpd 714
Figure AU2017204248B2_D0663
THF, rt 3h
Figure AU2017204248B2_D0664
1) NBS CH3CN, rt 1 h cPrZnBr Pd(OAc)2 SPhos
Figure AU2017204248B2_D0665
10% Pd/C H2 (30 bar)
2) O
MeOH, 30 °C
Figure AU2017204248B2_D0666
Br
120 °C, 2h
Figure AU2017204248B2_D0667
[001440] Step A: 3-Bromo-2-nitropyridine (2.0 g, 10 mmol) was dissolved in THF (20 mL). 2Dicyclohexylphosphino-2',6'-dimethoxybiphenyl (205 mg, 0.5 mmol) and palladium(II) acetate (113 mg, 0.5 mmol) were added to the mixture. To the mixture was added cyclopropylzinc bromide (15 mmol, 0.5 M in THF). The mixture was stirred at room temperature for 3 hours. The mixture was concentrated and chromatographed on silica gel, eluting with 0-5% EtOAc in CH2CI2 to provide 3-cyclopropyl-2-nitropyridine (1.1 g, 67%) as a white solid. MS m/z 165.2 [M+H]+.
[001441] Step B: 3-Cyclopropyl-2-nitropyridine (1.1 g, 6.7 mmol) was dissolved in MeOH (150 mL). The solution was passed over a cartridge containing 10% Pd/C under H2 (30 bar) at
337
2017204248 22 Jun 2017 °C. The solution was concentrated leaving 3-cyclopropyl-2-aminopyridine (898 mg, quant.) as colorless oil. MS m/z 135.1 [M+H]+.
[001442] Step C: Following the procedure in Example 16, Step A, 3-cyclopropyl-2aminopyridine (898 mg, 6.7 mmol), N-bromosuccinimide (1.3 g, 7.4 mmol), CH3CN (15 mL) and chloroacetone (0.81 mL, 10 mmol) provided 6-bromo-8-cyclopropyl-2-methylimidazo[l,2a]pyridine as a tan powder (255 mg, 15%). MS m/z 251.1 [M+H]+, 253.1 [M+2+H]+.
[001443] Step D: Following the procedure in Example 14, Part 2, 6-Bromo-8-fluoro-2methylimidazo[l,2-a]pyridine (255 mg, 1.0 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2dioxaborolane) (380 mg, 1.5 mmol), [l,l'-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (41 mg, 0.05 mmol) and potassium acetate (196 mg, 2 mmol) provided 8cyclopropyl-2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridine. The crude product was used directly in the next step.
[001444] Step E: Following the procedure in Example 14, Part 3, Step A, the crude product of 8-cyclopropyl-2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridine from Step D and 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (1 mmol, prepared in Example 14, Part 1, Step B), tetrakis(triphenylphosphine) palladium(O) (112 mg, 0.1 mmol), CH3CN (4 mL) and aqueous K2CO3 (IM, 4 mL) provided 2-(8-cyclopropyl-2methylimidazo[l,2-a]pyridin-6-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidm-4-one as a tan powder (330 mg, 99%). MS m/z 335.2 [M+H]+.
[001445] Step F: Following the procedure in Example 14, Part 3, Step B, 2-(8-cyclopropyl-2methylimidazo[l,2-a]pyridin-6-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (50 mg, 0.15 mmol) and piperazine (65 mg, 0.75 mmol) afforded the title compound as a tan powder (38 mg, 63%). M.P. 274-277 °C; MS m/z 401.4 [M+H]+; *H NMR (DMSO-<Z6, 500 MHz): δ 9.14 (1H, d, J = 1.7 Hz), 8.21 (1H, d, J = 2.9 Hz), 8.07 (1H, dd, J = 9.7 Hz, 2.8 Hz), 7.79 (1H, d, J = 1.0 Hz), 7.67 (1H, d, J = 9.2 Hz), 7.43 (1H, m), 6.99 (1H, s), 3.14 (4H, m), 2.89 (4H, m), 2.48 (1H, m), 2.37 (3H, s), 2.35 (1H, br s), 1.13 (2H, m), 1.04 (2H, m).
[001446] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 47 by substituting the appropriate starting materials, reagents and reaction conditions.
338
2017204248 22 Jun 2017 [001447] Example 48 [001448] Preparation of Cpd 674
Figure AU2017204248B2_D0668
[001449] Step A: 2-Aminonicotinic acid (4.8 g, 35 mmol) was suspended in THF (100 mL). To the mixture was added borane THF complex (40 mmol, 1 M in THF). The mixture was stirred at room temperature for 18 hours. The excess reagent was quenched by the addition of aqueous potassium hydroxide (2 M, 15 mL). The mixture was stirred vigorously for 10 minutes. The organic layer was collected and concentrated. The residue was chromatographed on silica gel, eluting with 0-10% MeOH in CH2CI2 to provide (2-aminopyridin-3-yl)methanol (1.0 g, 23%) as a white solid. MS m/z 125.1 [M+H]+.
[001450] Step B: Following the procedure in Example 16, Step A, (2-aminopyridin-3yl)methanol (1.0 g, 8 mmol), N-bromosuccinimide (1.57 g, 8.8 mmol), CH3CN (16 mL) and chloroacetone (0.81 mL, 10 mmol) provided (6-bromo-2-methylimidazo[l,2-a]pyridin-8yl)methanol as a tan powder (82 mg, 4%). MS m/z 241.1 [M+H]+, 243.1 [M+2+H]+.
[001451] Step C: Following the procedure in Example 14, Part 2, 6-Bromo-8-fluoro-2methylimidazo[l ,2-a]pyridine (85 mg, 0.35 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l ,3,2339
2017204248 22 Jun 2017 dioxaborolane) (133 mg, 0.53 mmol), [l,l'-bis(diphenylphosphino)ferrocene]dichloropalladium(ll) (30 mg, 0.035 mmol) and potassium acetate (69 mg, 0.7 mmol) provided (2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridin-8-yl)methanol. The crude product was used directly in the next step.
[001452] Step D: Following the procedure in Example 14, Part 3, Step A, the crude product of (2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)imidazo[l,2-a]pyridin-8-yl)methanol from Step C and 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.35 mmol, prepared in Example 14, Part 1, Step B,, tetrakis(triphenylphosphine) palladium(O) (39 mg, 0.035 mmol), CH3CN (2 mL) and aqueous K2CO3 (1 M,2 mL) provided 7-fhxoro-2-(8-(hydroxymethyl)-2methylimidazo[l,2-a]pyridin-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a tan powder (100 mg, 88%). MS m/z 325.2 [M+H]+.
[001453] Step E: Following the procedure in Example 14, Part 3, Step B, 7-fluoro-2-(8(hydroxymethyl)-2-methylimidazo [ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one (120 mg, 0.15 mmol) and piperazine (65 mg, 0.75 mmol) afforded the title compound as a tan powder (120 mg, 99%). M.P. >320 °C; MS m/z 391.3 [M+H]+; *H NMR (DMSO-d6, 500 MHz): δ 9.23 (1H, s), 8.24 (1H, d, J = 2.6 Hz), 8.07 (1H, dd, J = 9.7 Hz, 2.6 Hz), 7.96 (1H, s), 7.79 (1H, s), 7.73 (1H, d, J = 6.7 Hz), 6.87 (1H, s), 4.86 (2H, s), 3.14 (4H, m), 2.89 (4H, m), 2.37 (3H, s).
340
2017204248 22 Jun 2017 [001454] Example 49 [001455] Preparation of Cpd 353
1)CH(OMe)3,
Figure AU2017204248B2_D0669
Figure AU2017204248B2_D0670
[001456] Step A: Ethyl 3-(3,4-dimethoxyphenyl)-3-oxopropanoate (907 mg, 3.6 mmol) was dissolved in methanol (2 mL). p-Toluenesulfonic acid monohydrate (34.2 mg, 0.18 mmol) was added to the solution, followed by trimethylortho formate (0.59 mL, 5.4 mmol). The solution was stirred at 80 °C for 1 hour. Volatiles were removed with a stream of nitrogen. To the crude material were added 5-bromopyrimidin-2-amine (550 mg, 3.1 mmol) and diphenyl ether (2 mL). The mixture was heated at 170 °C for 10 minutes. The reaction mixture was passed through a through a flash silica column (33% Hcxancs/CTLC L) to give ethyl-3-(-5-bromopyrimidin-2(lH)ylideneamino)-3-(3,4-dimethoxyphenyl)acrylate as a yellow solid. MS m/z 408.0 [M+H]+, 410.0 [M+2+H]+.
[001457] Step B: To ethyl-3-(-5-bromopyrimidin-2(lH)-ylideneamino)-3-(3,4dimethoxyphenyl)acrylate was added diphenyl ether (2 mL). The reaction was heated to 220 °C for 1.5 hours. The mixture was purified by chromatography (100% CH2CI2) to provide 7-bromo2-(3,4-dimethoxyphenyl)-4H-pyrimido[l,2-a]pyrimidin-4-one (314 mg, 28% for 2 steps) as a yellow solid. MS m/z 361.9 [M+H]+, 363.9 [M+2+H]+; *H NMR (500 MHz, DMSO-^): δ 9.30
341
2017204248 22 Jun 2017 (1H, d, J = 2.7 Hz), 9.20 (1H, d, J= 2.9 Hz), 7.88 (1H, dd, J= 8.5 Hz, 2.6 Hz), 7.79 (1H, d,
J = 2.2 Hz), 7.15 (1H, s), 7.11 (1H, d, J= 8.5 Hz), 3.88 (3H, s), 3.85 (3H, s).
[001458] Step C: A mixture of 7-bromo-2-(3,4-dimethoxyphenyl)-4H-pyrimido[l,2a]pyrimidin-4-one (53.7 mg, 0.15 mmol), tert-butyl 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2yl)-5,6-dihydropyridine-l(2H)-carboxylate (50.5 mg, 0.016 mmol), Pd(dppf)C12 (11 mg, 0.015 mmol), K2CO3 (62.2 mg, 0.45 mmol), and ACN (1 mL) was degassed and then heated under N2 at 80 °C overnight. The volatiles were removed and the residue was used in the next step without purification. MS m/z 465.4 [M+H]+.
[001459] Step D: A solution of tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4Hpyrimido[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate in CH2CI2/TFA (0.5 mL / 0.5 mL) was stirred at 0 °C for 2 hours. After most of the TFA and CH2CI2 were removed by rotary evaporation, ice-cold saturated NaHCCL was added to the reaction mixture. The mixture was extracted with CH2CI2. The organic layer was dried over MgSCfi, concentrated, and chromatographed (5% MeOH/CH2C12) to provide the title compound as a yellow solid. MS m/z 365.1 [M+H+], [001460] Example 50 [001461] Preparation of Cpd 486
Figure AU2017204248B2_D0671
DMF,
Figure AU2017204248B2_D0672
342
2017204248 22 Jun 2017 [001462] Step A: A mixture of 2-chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (995 mg, 5 mmol, prepared in Example 14, Part 1), Cui (19.0 mg, 0.1 mmol), PdCl2(PPh3)2 (70.2 mg, 0.1 mmol), ethynyltrimethylsilane (2.1 mL, 15 mmol), triethylamine (2.1 mL, 15 mmol) in DMF (10 mL) was degassed and then heated under N2 at 50 °C overnight. The volatiles were removed and the crude 7-fhioro-2-((trimethylsilyl)ethynyl)-4H-pyrido[l,2-a]pyrimidin-4-one was used directly for the next step. MS m/z 261.1 [M+H+], [001463] Step B: Potassium carbonate (1.0 g, 7.5 mmol) was added to the solution of crude 7-fluoro-2-((trimethylsilyl)ethynyl)-4H-pyrido[l,2-a]pyrimidin-4-one in MeOH (33 mL). The mixture was stirred at 0 °C for 0.5 hours. After MeOH was removed by rotary evaporation, water was added. The precipitate was filtered and purified by silica chromatography (8% EtOAc/CH2Cl2) to give 2-ethynyl-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (192.1 mg, 20% for 2 steps) as a yellow solid. MS m/z 189.1 [M+H+], [001464] Step C: A mixture of 2-ethynyl-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (192.1 mg, 1.0 mmol), 4-iodo-2,6-dimethylpyridin-3-ol (305.3 mg, 1.2 mmol), Cui (9.7 mg, 0.05 mmol), PdCl2(PPh3)2 (35.8 mg, 0.05 mmol), triethylamine (288 pL, 2 mmol) in DMF (1.7 mL) was degassed and then heated under N2 at 40 °C overnight. After most of the DMF was removed, water was added. The precipitate was filtered and purified by chromatography (14% EtOAC/CH2Cl2) to give 2-(5,7-dimcthylfuro[2,3-c]pyridin-2-yl)-7-fluoro-4H-pyrido[l,2a]pyrimidin-4-one (126.3mg, 41%) as a yellow solid. MS m/z 310.1 [M+H-].
[001465] Step D: Piperazine (64.6 mg, 0.75 mmol) was added to a solution of 2-(5,7dimethylfuro[2,3-c]pyridin-2-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (46.4 mg, 0.15 mmol) in DMA (0.5 mL). The reaction mixture was heated at 120 °C for 2 hours. After most of the DMA was removed, CH3CN was added to the reaction mixture, and a precipitate was formed. The precipitate was filtered, washed with water and dried to provide the title compound as a yellow solid (30 mg, 53%). M.P.198-200 °C; MS m/z 376.3 [M+H+]; *H NMR (500 MHz, DMSO-14): δ 8.25 (1H, d, 7= 2.5 Hz), 8.13 (1H, dd, 7= 9.9 Hz, 2.5 Hz), 7.73 (1H, d, J = 9.8 Hz), 7.64 (1H, s), 7.41 (1H, s), 6.94 (1H, s), 3.17 (4H, m), 2.90 (4H, m), 2.71 (3H, s), 2.51 (3H, s), 2.07 (1H, s).
[001466] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 50 by substituting the appropriate starting materials, reagents and reaction conditions.
343
2017204248 22 Jun 2017 [001467] Example 51 [001468J Preparat ion of Cpd 603
Pd(dppf)Cl2
K?CO3
AGN 80 % Boe”
Figure AU2017204248B2_D0673
imh2
Pd/C(10%)
MeOH + ,.-···'χ....·Β··0\ ,-. .·N faoc
Figure AU2017204248B2_D0674
Figure AU2017204248B2_D0675
-N
. .OTf
NaH (O··^ T Y
pnNTf2 r τ
-- Ύ
DMF Boc '' δ
Figure AU2017204248B2_D0676
Pd(dppf)C12
K3PO4, dioxane,
100 °C
Figure AU2017204248B2_D0677
[001469] Step A: A mixture of 5-bromopyridin-2-amine (433 mg, 2.5 mmol), tert-butyl 4(4,4.5,5-tetramethyi-1,3,2-dioxaborolan-2-vl)-5.6-dihydropyridine-1 (2H)-carboxyiate (928 mg, 3.0 mmol), PdCfdppf (204 mg, 0.25 mmol). K2CO3 (1.04 g. 7.5 mmol) in acetonitrile (8.0 mL) was degassed and then stirred at 80 °C overnight. The volatiles were removed and the residue was chromatographed with 7% MeOH in CI LCl· to provide tert-butyl 4-(6-aminopyridin-3-yl)5,6-dihydropyridine-1(2H)-carboxylate as a light yellow oil (599 mg. 87%). MS m/z 276.3 [M-H-If· [0014701 Step B; A solution ofthe product from Step A (599 mg, 2.2 mmol) in methanol (10 mL) was hydrogenated using Pd/C (10%. 60 mg) in a Parr shaker (60 psi) overnight. The mixture was filtered through Celite, evaporated and chromatographed with 7% MeOH in DCM
344
2017204248 22 Jun 2017 to provide tert-butyl 4-(6-aminopyridin-3-yl)pipcridine-l-carboxylate as a brown oil (600 mg, 99%). MS m/z 278.3 [MHI]’.
10014711 Step C: A mixture of the product from Step B (600 mg, 2.2 mmol) and bis(2,4,6irichlorophenyl) malonale (1,0 g, 2.2 mmol) in THE (8.0 mL) was stirred al room temperature for 1 hour. The mixture was then filtered and the solid was washed with DCM. The cake was collected and dried to give tert-butyl 4-(2-hvdroxy-4-o.xo-4H-pyrido[ 1,2-a]pyrimidin-7yl)pipcridinc-l-carboxylafe as an off-white solid (455 mg, 63%). MS nv'z 346.4 [Mt H] ’ . [0014721 Step Dr Into a solution ofthe product from Step C (455 rag, 1.3 mmol) in DME (6 mL) at room temperature was added Nal l (60%, 62 mg, 1.6 mmol). The mixture was stirred for 15 .minutes, then N-phenylbis(trifluoromethanesulfonimide) (511 mg, 1.4 mmol) was added in one portion. The mixture was stirred at room temperature overnight. Aqueous workup followed by purification with 3% MeOH in CTBCb provided tert-butyl 4-(4-oxo-2(tTifluoromethylsulfonyk\xy)-4H-pyrido[l,2-a]pyrimidin-7-yl)piperidinc-l-carboxylate as an offwhite solid (521 mg, 84%), [0014731 Step E: A mixture of the product from Step D (300 mg, 0.62 mmol). 1 -mcthyl-5(4,4.5,5-tetramethyl-l ,3,2-dioxaborolan-2-yl)-1 H-indazole (142 mg, 0.81 mmol), PdCNdppf(5l mg, 0.062 mmol), K3PO4 (193 mg. 0.93 mmol) in dioxane (2.0 ntL) was degassed and then stirred at 100 °C overnight. The volatiles were removed and the residue was chromatographed with 10% MeOH in CFLCF to give tert-butyl 4-(2-( I -methyl-1 H-indazol-5-yl)-4-oxo-4Hpyrido[L2-a]pyrimidin-7-yl)piperidine-l -carboxylate with some impurities (~ 300 mg), which was used directly in the next step. MS m/z 460.5 [M H1]
1001474[ Step F: Following the procedure in Example 22, Step D, the above product from Step E (~- 300 mg) and HC1 in dioxane (4 M, 5 mL) provided the title compound as a white solid (196 mg, 88%, in two steps). M.P. 268-270 °C; MS m// 360.4 jMHI| ; 'H NMR (DMSO-t/o, 500 MHz) δ 8.75 (s, 1 H i, 8.70 (s, 1H), 8.27 (dd, J - 9.0 Hz, 1.6 Hz. 1H), 8.21 (s, IH), 8.00 (dd,./- 9 Hz, 1,6 Hz, 1H). 7,76 (d, ./ 911/, 2H), 7.06 (s, 1H), 4.10 (s, 3H), 3.06 (d, J - 10 Hz, 2H), 2.842.79 (m. 1H), 2.64-2.59 (m, 2H), 2.04 (bs, 1 H), 1.81 (d,,/ 10 Hz, 2H), 1.56-1.53 (m, 2H).
[001475] As shown in Table i below, additional compounds disclosed herein may be prepared according to Example 51 by substituting the appropriate starting materials, reagents and reaction conditions.
345
2017204248 22 Jun 2017 [001476] Example 52 [001477] Preparation of Cpd769
Figure AU2017204248B2_D0678
Figure AU2017204248B2_D0679
Figure AU2017204248B2_D0680
[001478] Step A: To an oven dried, argon filled flask was added 7-bromo-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (270 mg, 0.73 mmol, prepared in Example 38, Step A), Cui (3.4 mg, 5%), PclCL(PPh3h (30 mg, 5%), triethylamine (1 mL) and DMF (1 mL). The resulting mixture was purged with argon three times and then a solution of tert-butyl prop-2-ynylcarbamate (0.14 g, 0.88 mmol) in DMF (1 mL) was added. The mixture was heated at 80 °C overnight, then cooled to room temperature. After addition of water, the resulting solids were filtered and washed with water and CH3CN sequentially to provide tert-butyl 3-(2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrido[ 1,2a]pyrimidin-7-yl)prop-2-ynylcarbamate (260 mg, 80%). MS m/z 445.2 [M+H]-.
[001479] Step B: Following the procedure in Example 22, Step D, the above product from Step A (100 mg, 0.23 mmol) and HC1 in dioxane (4 M, 3 mL) provided 7-(3-aminoprop-l-ynyl)-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as an off-white solid (50 mg, 66%). MS m/z 345.4 [M+H]+.
346
2017204248 22 Jun 2017 [001480] Step C: The above product from Step C (50 mg, 0.15 mmol) was mixed with Pd/C (10%, 5 mg) in dichloromethane/methanol (1:1,2 mL) and stirred under 1 atmosphere of hydrogen overnight. The reaction mixture was filtered through celite, concentrated and chromatographed on a silica column, eluting with CH2CI2 / MeOH (85/15) to provide 7-(3aminopropyl)-2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (45 mg, 89%). MS m/z 349.3 [M+H]+.
[001481] Step D: Following the procedure in Example 23, the above product from Step B (45 mg, 0.13 mmol), formaldehyde (0.05 mL, 37%, - 0.8 mmol) and sodium triacetoxyborohydride (50 mg, 0.24 mmol) in dichloromethane/methanol (10:1, 1 mL) provided the title compound as a white solid (20 mg, 41%). M.P. 136-138 °C; MS m/z 377.3 [M+H]+; *H NMR (DMSO-ri6, 500 MHz) δ 8.84 (d, J= 1.6 Hz, 1H), 8.58 (d, J= 1.6 Hz, 1H), 8.00 (d, J= 9 Hz, 1H), 7.77 (d, J = 9
Hz, 1H), 7.60 (d, J= 1.6 Hz, 1H), 7.02 (s, 1H), 2.79-2.75 (m, 5H), 2.45 (s, 3H), 2.25 (t, J = 10
Hz, 2H), 2.15 (bs, 6H), 1.83-1.76 (m, 2H).
[001482] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 52 by substituting the appropriate starting materials, reagents and reaction conditions.
[001483] Example 53 [001484] Preparation of Cpd 407
Br
S-Phos, O
Pd2(dba)3, < Cs2CO3,
DME,
90° C, 3h
6N HCI,
DCM, dioxane, rt, 20 min.
O'
PrNH2,
DCE,
NaBH(OAc)3, 70° C, 15 min. hn
O
Figure AU2017204248B2_D0681
347
2017204248 22 Jun 2017 [001485] Step A: A mixture of 7-bromo-2-(3,4-dimethoxyphenyl)-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one (1.5 g, 4.0 mmol, prepared in a manner exemplified in Example 22, Steps A and B), l,4-dioxa-8-azaspiro[4.5]decane (660 pL, 5.05 mmol), S-Phos (140 mg, 0.34 mmol), Pd2(dba)3 (92 mg, 0.1 mmol), Cs2CO3 (3.0 g, 9.2 mmol), and DME (12 mL) was heated under argon at 90° C for 3 hours. The reaction mixture was then suspended in a solution of CH2C12 and acetone, and was filtered. The filtrate was concentrated under vacuum. Purification by silica gel chromatography (1:1 CH2C12 / EtOAc, then 20% acetone in CH2C12), followed by trituration with 1:1 hexanes / ether, yielded 2-(3,4-dimethoxyphenyl)-9-methy 1-7-(1,4-dioxa-8azaspiro[4.5]decan-8-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (878 mg, 50%) as a yellow solid. MS m/z 438.2 [M+H]+.
[001486] Step B: A solution of 2-(3,4-dimethoxyphenyl)-9-methy 1-7-(1,4-dioxa-8azaspiro[4.5]decan-8-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (875 mg, 2.0 mmol) in CH2C12 / dioxane (1:1 v/v, 28 mL) was treated with 6 N HC1 (7 mL). The mixture was stirred at room temperature for 20 minutes, then made basic with aqueous K2CO3. The mixture was extracted into CH2C12. The organic layer was dried over MgSO4, filtered, and concentrated under vacuum. Trituration with 1:1 hexanes / acetone yielded 2-(3,4-dimethoxyphenyl)-9-methyl-7-(4oxopiperidin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (758 mg, 96%) as a yellow solid. MS m/z 394.3 [M+H]+; 'HNMR (500 MHz, DMSO-<4): δ 8.27 (1H, d J= 2.5 Hz), 8.08 (1H, s), 7.85 (1H, dd, J = 8.5 Hz, 2.5 Hz), 7.81 (1H, m), 7.09 (1H, d, J = 8.5 Hz), 6.96 (1H, s), 3.88 (3H, s), 3.84 (3H, s), 3.67 (4H, t, J = 6 Hz), 2.64 (3H, s), 2.53 (4H, m, obscured by DMSO- d6).
[001487] Step C: A mixture of 2-(3,4-dimethoxyphenyl)-9-methyl-7-(4-oxopiperidin-l-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (50 mg, 0.13 mmol), NaBH(OAc)3 (65 mg, 0.31 mmol), DCE (500 pL), and n-propylamine (40 pL, 0.49 mmol) was heated at 70° C for 15 minutes. The reaction mixture was partitioned between aqueous K2CO3 and CH2C12. The organic layer was concentrated under vacuum. Purification by silica gel chromatography (10% MeOH in CH2C12, followed by 9:1:0.1 CH2C12 : MeOH: NH4OH) yielded the title compound (47 mg, 87%) as a yellow solid. M.P.178-184 °C; MS m/z 437.5 [M+H]+; *H NMR (500 MHz, DMSO-i/Q: δ 8.17 (1H, d, J = 3 Hz), 8.00 (1H, m), 7.84 (1H, dd, J = 8.5 Hz, 2 Hz), 7.80 (1H, d, J = 2 Hz), 7.08 (1H, d, J = 8.5 Hz), 6.95 (1H, s), 3.88 (3H, s), 3.84 (3H, s), 3.67 (2H, d, J = 12.5 Hz), 2.84 (2H, t, J = 12.5 Hz), 2.61 (3H, s), 2.57 (1H, m), 2.54 (2H, m, obscured by DMSO- dq peak), 1.95 (2H, d, J - 12.5 Hz), 1.41 (4H, m), 0.89 (3H, t, J - 7.5 Hz).
348
2017204248 22 Jun 2017 [001488] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 53 by substituting the appropriate starting materials, reagents and reaction conditions.
[001489] Example 54 [001490] Preparation of Cpd 322
Figure AU2017204248B2_D0682
Figure AU2017204248B2_D0683
[001491] Step A: Into a mixture of 2-methylbenzo[d]oxazole-6-carboxylic acid (2.54 g, 14.4 mmol) and SOCI2 (2.05 g, 17.2 mmol) in toluene (70 mL) was added 6 drops of DMF. The mixture was then stirred at 70 °C for 3 hours, cooled and evaporated to give 2methylbenzo[d]oxazole-6-carbonyl chloride as an oil, which solidified on standing (2.9 g, 100%). ‘HNMR (500 MHz, CDCfi) δ 8.27 - 8.30 (1H, m), 8.13 (1H, dd, /=8.4, 1.7 Hz), 7.74 (1H, dd, /=8.5, 0.6 Hz), 2.73 (3H, s).
[001492] Step B: Following the procedure in Example 31, Part 1, Step A, reaction of 2methylbenzo[d]oxazole-6-carbonyl chloride (2.9 g, 14.4 mmol), dimethylmalonate (1.9 g, 14.4 mmol), MgCfr (1.37 g, 14.4 mmol), and triethylamine (2.9 mL, 28.8 mmol) in acetonitrile (15
349
2017204248 22 Jun 2017 mL) provided dimethyl 2-(2-methylbenzo[d]oxazole-6-carbonyl)malonate (2.75 g, 66%). MS m/z 292.0 [M+H]+.
[001493] Step C: Following the procedure in Example 31, Part 1, Step B, reaction of dimethyl 2-(2-methylbenzo[d]oxazole-6-carbonyl)malonate (2.75 g, 9.5 mmol), POCI3 (10 mL) and DIPEA (2.6 mL, 15.8 mmol) provided dimethyl 2-(chloro(2-methylbenzo[d]oxazol-6yl)methylene)malonate (0.7 g, 24%). MS m/z 310.1 [M+H]+.
[001494] Step D: Following the procedure in Example 33, Step B and C, reaction of dimethyl 2-(chloro(2-methylbenzo[d]oxazol-6-yl)methylene)malonate (0.7 g, 2.3 mmol), tert-butyl 2-(5fluoropyridin-2-yl)acetate (0.57 g, 2.7 mmol), prepared as in Example 33, Step A, NaH (0.18 g, 4.5 mmol) in DMF followed by reaction with TFA and water at 100 °C provided 2-(4-amino-3hydroxyphenyl)-7-fluoro-4H-quinolizin-4-one (0.3 g, 48%). MS m/z 271.2 [M+H]+.
[001495] Step E: Into a mixture of 2-(4-amino-3-hydroxyphenyl)-7-fhioro-4H-quinolizin-4-one (0.3 g, 1.1 mmol) and trimethyl ortho formate (1.4 mL, 11.1 mmol) was added TFA (0.13 mL, 1.8 mmol). The mixture was stirred for 2 hours at room temperature and then evaporated to give 7-fluoro-2-(2-methylbenzo[d]oxazol-6-yl)-4H-quinolizin-4-one (0.3 g, 99%). MS m/z 295.2 [M+H]+.
[001496] Step F: A mixture of 7-fluoro-2-(2-methylbenzo[d]oxazol-6-yl)-4H-quinolizin-4-one (0.15 g, 0.51 mmol) and (S)-2-methylpiperazine (0.2 g, 2.0 mmol) in DMA (1.0 mL) was stirred at 130 °C overnight. The solvent was removed by a stream of nitrogen and the residue was purified with methanol in dichloromethane (10%) to give the title compound as a yellow solid (69 mg, 36%). M.P. 115-117 °C; MS m/z 375.3 [M+H]+; *H NMR (500 MHz, CDC13) δ 8.55 (1H, d, 7=2.2 Hz), 7.79 (1H, d, 7=1.3 Hz), 7.73 (1H, d, 7=7.9 Hz), 7.64 (1H, dd, 7=8.2, 1.6 Hz), 7.49 (1H, d, 7=9.5 Hz), 7.33 (1H, d, 7=2.5 Hz), 6.86 - 6.91 (2H, m), 3.60 (2H, br. s.), 3.25 - 3.34 (1H, m), 3.10 - 3.22 (2H, m), 2.93 - 3.03 (1H, m), 2.62 - 2.70 (4H, m), 1.31 (3H, d, 7=6.3 Hz).
[001497] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 54 by substituting the appropriate starting materials, reagents and reaction conditions.
350 [001498] Example 55
2017204248 22 Jun 2017 [001499] Preparation of Cpd 380
Figure AU2017204248B2_D0684
Figure AU2017204248B2_D0685
[001500] Part 1, Step A: A mixture of 6-chloropyridazin-3-amine (0.26 g, 2.0 mmol), tert-butyl 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.62 g, 2.0 mmol), PdCl2dppf (0.16 g, 0.2 mmol), K2CO3 (2.0 M, 3.0 mL, 6.0 mmol) in acetonitrile (6.0 mL) was stirred at 100 °C overnight. Aqueous workup followed by purification with methanol in dichloromcthanc (0-10%) provided tert-butyl 4-(6-aminopyridazin-3-yl)-5,6-dihydropyridincl(2H)-carboxylate (0.51 g, 93%). MS m/z 277.2 [M+H]+.
[001501] Part 1, Step B: A solution of tert-butyl 4-(6-aminopyridazin-3-yl)-5,6dihydropyridine-1 (2H)-carboxylate (0.4 g, 1.4 mmol) in ethanol (25 mL) was hydrogenated using Pd(OH)2 on carbon (20%, 0.2 g) in a Parr shaker (60 psi) overnight. The mixture was filtered through Celite, evaporated and purified with methanol in dichloro methane (0-10%) to give tert-butyl 4-(6-aminopyridazin-3-yl)piperidine-l-carboxylate (0.25 g, 62%). MS m/z 279.2 [M+H]+.
Figure AU2017204248B2_D0686
[001502] Part 2, Into a solution of 6-iodo-2-methylbenzo[d]thiazole (2.24 g, 7.3 mmol) in THF (15 mL) at -20 °C was added i-PrMgCl in THF (2.0 M, 3.7 mL, 7.4 mmol). The mixture was kept between -10 °C to -20 °C for 1 hour, then transferred via a cannula to a solution of5(bis(methylthio)methylene)-2,2-dimethyl-l,3-dioxane-4,6-dione (1.4 g, 5.6 mmol) in THF (15 mL). The reaction was slightly exothermic. The mixture was stirred at room temperature for 90
351
2017204248 22 Jun 2017 minutes before quenching with aqueous NH4CI solution. Aqueous workup followed by purification with ethyl acetate in dichloro methane (0-10%) provided 2,2-dimethyl-5-((2methylbenzo[d]thiazol-6-yl)(methylthio)methylene)-l,3-dioxane-4,6-dione (1.26 g, 64%). MS m/z 350.1 [M+H]+.
Figure AU2017204248B2_D0687
Figure AU2017204248B2_D0688
[001503] Part 3, A mixture of 2,2-dimethyl-5-((2-methylbenzo[d]thiazol-6yl)(methylthio)methylene)-l,3-dioxane-4,6-dione (0.13 g, 0.36 mmol) and tert-butyl 4-(6aminopyridazin-3-yl)piperidine-l-carboxylate (0.1 g, 0.36 mmol) in diphenyl ether (2.0 mL) was stirred at 140 °C for 1 hour. The temperature was then raised to 240 °C and stirred for 30 minutes. The mixture was evaporated and the residue was purified by prep HPLC to give the title compound as a yellow solid (33 mg, 24%) trifluoroacetic acid salt. M.P. 230-235 °C; MS m/z 378.2 [M+H]+; *H NMR (500 MHz, DMSO-cf) δ 8.87 - 8.92 (1H, m), 8.28 - 8.33 (1H, m), 8.08 (1H, d, /=9.1 Hz), 7.99 - 8.04 (1H, m), 7.79 (1H, s), 7.26 (1H, s), 3.41 - 3.48 (2H, m), 3.22 3.32 (1H, m), 3.03 - 3.11 (2H, m), 2.84 (3H, s), 2.14 - 2.22 (2H, m), 2.08 (1H, s), 1.92 - 2.03 (2H, m).
352
Figure AU2017204248B2_D0689
2017204248 22 Jun 2017 [001504] Example 56 [001505] Preparation of Cpd 398
Figure AU2017204248B2_D0690
Figure AU2017204248B2_D0691
Figure AU2017204248B2_D0692
[001506] Step A: Following the procedure of Example 9, Step G, reaction of 6chloropyridazin-3-amine (0.65 g, 5.0 mmol), ethyl 3-(3,4-dimethoxyphenyl)-3-oxopropanoate (1.77 g, 7.0 mmol) and PPTs (63 mg, 0.25 mmol) provided 7-chloro-2-(3,4-dimethoxyphenyl)4H-pyrimido[l,2-b]pyridazin-4-one (0.23 g, 14%). MS m/z 318.1 [M+H]+.
[001507] Step B: Following the procedure of Example 34, Step C, reaction of 7-chloro-2-(3,4dimethoxyphenyl)-4H-pyrimido[l,2-b]pyridazin-4-one (0.12 g, 0.38 mmol), tert-butyl 4-(4,4,5,5tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.14 g, 0.45 mmol), PdCbdppf (35 mg, 0.038 mmol), K2CO3 (2.0 M, 0.6 mL, 1.2 mmol) in acetonitrile (1.2 mL) provided tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyrimido[1,2-b]pyridazin-7-yl)5,6-dihydropyridine-l(2H)-carboxylate (100 mg, 56%). MS m/z 465.3 [M+H]+.
[001508] Step C: Following the procedure of Example 34, Step D, treatment of tert-butyl 4-(2(3,4-dimethoxyphenyl)-4-oxo-4H-pyrimido[l,2-b]pyridazin-7-yl)-5,6-dihydropyridine-l(2H)carboxylate (100 mg, 0.21 mmol) with TFA (1.0 mL) and dichloro methane (1.0 mL) provided the title compound as a yellow solid (50 mg, 65%). M.P. 195-200 °C; MS m/z 365.3 [M+H]+; *H NMR (500 MHz, DMSO-cf) δ 8.13 (1H, d, /=9.8 Hz), 7.96 (1H, d, /=9.8 Hz), 7.82 (1H, dd, /=8.5, 2.2 Hz), 7.74 (1H, d, /=2.2 Hz), 7.15 (1H, s), 7.08 (1H, d, /=8.8 Hz), 7.01 (1H, br. s.), 3.87 (3H, s), 3.83 (3H, s), 3.57 (2H, br. s.), 3.00 (2H, br. s.), 2.58 (2H, br. s.).
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2017204248 22 Jun 2017 [001509] Example 57 [001510] Preparation of Cpd 402
Figure AU2017204248B2_D0693
Figure AU2017204248B2_D0694
dioxane 100 °C
Figure AU2017204248B2_D0695
Figure AU2017204248B2_D0696
[001511] Step A: A mixture of 5-bromopyrazin-2-amine (0.17 g, 1.0 mmol) and bis(2,4,6trichlorophenyl)malonate (0.56 g, 1.2 mmol) in THF (4.0 mL) was stirred at 88 °C for 1 hour. The mixture was then filtered and the solid was washed with ethyl acetate. The cake was collected and dried to give 7-bromo-2-hydroxy-4H-pyrazino[l,2-a]pyrimidin-4-one (0.18 g, 74%). MS m/z 242.0 [M+H]+, 244.0 [M+2+H]+.
[001512] Step B: Following the procedure of Example 34, Step C, reaction of 7-bromo-2hydroxy-4H-pyrazino[l,2-a]pyrimidin-4-onc (0.18 g, 0.74 mmol), tcrt-butyl 4-(4,4,5,5tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.27 g, 0.89 mmol), PdC12dppf(60 mg, 0.074 mmol), K2CO3 (0.31 g, 2.2 mmol) inDMF (2.5 mL) provided
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2017204248 22 Jun 2017 tert-butyl 4-(2-hydroxy-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)carboxylate (0.18 g, 70%). MS m/z 345.3 [M+H]+.
[001513] Step C: Into a solution of tert-butyl 4-(2-hydroxy-4-oxo-4H-pyrazino[l,2a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.18 g, 0.52 mmol) in DMF (3.0 mL) at room temperature was added NaH (60%, 23 mg, 0.57 mmol). The mixture was stirred for 15 minutes then PhNTf2 (0.22 g, 0.62 mmol) was added in one portion. The mixture was stirred overnight. Aqueous workup followed by purification with ethyl acetate in dichloromethane (020%) provided tert-butyl 4-(4-oxo-2-(trifluoromethylsulfonyloxy)-4H-pyrazino[l,2-a]pyrimidin7-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.1 g, 40%). MS m/z 377.1 [M-Boc+H]+.
[001514] Step D: A mixture of tert-butyl 4-(4-oxo-2-(trifluoromethylsulfonyloxy)-4Hpyrazino[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)-carboxylate (80 mg, 0.17 mmol), 3,4dimethoxyphenylboronic acid (46 mg, 0.25 mmol), PdCl2dppf (14 mg, 0.017 mmol), K3PO4 (54 mg, 0.25 mmol) in dioxane (2.0 mL) was stirred at 100 °C for 24 hours. The mixture was filtered, evaporated and purified with ethyl acetate in dichloro methane (0-20%) to give tert-butyl 4-(2-(3,4-dimethoxyphenyl)-4-oxo-4H-pyr az ino[l, 2-a]pyrimidin-7-yl)-5,6-dihydropyridine1 (2H)-carboxylate (43 mg, 55%). *H NMR (500 MHz, CDCI3) δ 9.10 (1H, s), 8.61 (1H, s), 7.72 (1H, s), 7.70 (1H, d, J= 1.8 Hz), 7.00 (3H, m), 4.19 - 4.26 (2H, m), 4.03 (3H, s), 3.98 (3H, s), 3.69 - 3.76 (2H, m), 2.56 - 2.67 (2H, m), 1.51 (9H, s).
[001515] Step E: Following the procedure of Example 34, Step D, treatment of tert-butyl 4-(2(3,4-dimethoxyphenyl)-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7-yl)-5,6-dihydropyridine-l(2H)carboxylate (43 mg, 0.09 mmol) with TFA (1.0 mL) and dichloro methane (1.0 mL) provided the title compound as a yellow solid (34 mg, 100%). M.P. 205-208 °C; MS m/z 365.4 [M+H]+; *H NMR (500 MHz, DMSO-dk) δ 9.15 (1H, d, 7=0.9 Hz), 8.41 (1H, s), 7.85 - 7.94 (1H, m), 7.78 (1H, d, 7=1.9 Hz), 7.27 (1H, s), 7.11 (1H, d, 7=8.5 Hz), 6.97 - 7.05 (1H, m), 3.89 (3H, s), 3.84 (3H, s), 3.58 (2H, br. s.), 3.21 - 3.42 (3H, m), 3.07 (2H, t, 7=5.7 Hz).
[001516] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 57 by substituting the appropriate starting materials, reagents and reaction conditions.
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2017204248 22 Jun 2017 [001517] Example 58 [001518] Preparation of Cpd 499
Figure AU2017204248B2_D0697
[001519] Step A: A mixture of tert-butyl 4-(6-aminopyridazin-3-yl)piperidine-l-carboxylate (0.88 g, 3.2 mmol) and bis(2,4,6-trichlorophenyl) malonate (1.76 g, 3.8 mmol) in THF (12 mL) was stirred at 40 °C for 1 hour. The mixture was then evaporated and purified with methanol in dichloromethane (0-10%) to give tert-butyl 4-(2-hydroxy-4-oxo-4H-pyrimido[l,2-b]pyridazin-7yl)piperidine-l-carboxylate (0.69 g, 63%). MS m/z 347.2 [M+H]+.
[001520] Step B: Following the procedure of Example 57, Step C, reaction of tert-butyl 4-(2hydroxy-4-oxo-4H-pyrimido[l,2-b]pyridazin-7-yl)piperidine-l-carboxylate (0.69 g, 2.0 mmol), NaH (60%, 88 mg, 2.2 mmol), PhNTf2 (0.79 g, 2.2 mmol) in DMF (12 mL) provided tert-butyl 4-(4-oxo-2-(trifluoromethylsulfonyloxy)-4H-pyrimido[l,2-b]pyridazin-7-yl)piperidine-lcarboxylate (0.87 g, 91%). 'HNMR (500 MHz, CDC13) δ 7.90 (1H, d, /=9.5 Hz), 7.61 (1H, d, /=9.5 Hz), 6.45 (1H, s), 4.28 - 4.36 (2H, m), 3.20 - 3.30 (1H, m), 2.82 - 2.93 (2H, m), 1.94 - 2.02 (2H, m), 1.75 - 1.85 (2H, m), 1.49 (9H, s).
[001521] Step C: A mixture of tert-butyl 4-(4-oxo-2-(trifluoromethylsulfonyloxy)-4Hpyrimido[l,2-b]pyridazin-7-yl)piperidine-l-carboxylate (0.24 g, 0.5 mmol), 2-methyl-6(trimethylstannyl)benzo[d]oxazole (0.18 g, 0.6 mmol), Pd(PPh3)4 (58 mg, 0.05 mmol), Cui (23 mg, 0.12 mmol) in dioxane (2.0 mL) was stirred at 90 °C overnight. The mixture was concentrated and purified with methanol in dichloromethane (0-10%). The desired fractions were combined and evaporated. The residue was treated with TFA (1.0 mL) and dichloro methane (1.0 mL) and worked up as described in Example 34, Step D to give the title
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2017204248 22 Jun 2017 compound as a yellow solid (86 mg, 48%). M.P. 126-128 °C; MS m/z 362.2 [M+H] ; *H NMR (500 MHz, methanol-Y) δ 8.20 (1H, s), 7.91 - 7.99 (2H, m), 7.67 (2H, d, /=8.2 Hz), 7.07 (1H, s), 3.45 (2H, d, /=12.3 Hz), 3.07 - 3.21 (2H, m), 3.30 - 3.24 (1H, m), 2.61 (3H, s), 2.14 (4H, br. s.).
[001522] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 58 by substituting the appropriate starting materials, reagents and reaction conditions.
[001523] Example 59 [001524] Preparation of Cpd 502
Figure AU2017204248B2_D0698
[001525] Step A: A mixture of tert-butyl 4-(5-aminopyrazin-2-yl)piperidine-l-carboxylate (0.2 g, 0.72 mmol), ethyl 3-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (0.21 g, 0.79 mmol), Si(0Et)4 (0.16 mL, 0.72 mmol), PPTs (18 mg, 0.072 mmol) in m-xylene (0.36 mL) was stirred at 60 °C for 1 hour then 130 °C overnight. The mixture was cooled and loaded directly onto a silica column and purified with methanol in dichloromethane (0-10%). Further purification with ethyl acetate in dichloromethane (20-100%) provided tert-butyl 4-(2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7-yl)piperidine-lcarboxylate (0.117 g, 34%). MS m/z 476.4 [M+H]+.
[001526] Step B: Following the procedure of Example 34, Step D, treatment of tert-butyl 4-(2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7-yl)piperidine1-carboxylate (117 mg, 0.25 mmol) with TFA (1.0 mL) and dichloromethane (2.0 mL) provided
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2017204248 22 Jun 2017 the title compound as a yellow solid (93 mg, 100%). MS m/z 376.4 [M+H]+; *H NMR (500 MHz, methanol-i/4) δ 9.13 (1H, d, 7=1.3 Hz), 8.53 (1H, s), 8.27 (1H, d, 7=0.6 Hz), 7.55 (1H, d, 7=1.3 Hz), 7.28 (1H, s), 3.27 - 3.34 (2H, m), 2.99 - 3.09 (1H, m), 2.85 - 2.96 (2H, m), 2.75 (3H, s), 2.47 (3H, d, 7=0.9 Hz), 2.05 - 2.14 (2H, m), 1.84 - 1.95 (2H, m).
[001527] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 59 by substituting the appropriate starting materials, reagents and reaction conditions.
[001528] Example 60 [001529] Preparation of Cpd 512
Figure AU2017204248B2_D0699
Figure AU2017204248B2_D0700
Figure AU2017204248B2_D0701
[001530] Step A: Following the procedure of Example 59, Step A, the reaction of tert-butyl 4(6-aminopyridazin-3-yl)piperidine-l-carboxylate (0.28 g, 1.0 mmol), ethyl 3-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-3-oxopropanoate (0.28 g, 1.1 mmol), Si(OEt)4 (0.22 mL, 1.0 mL), PPTs (25 mg, 0.1 mmol) in m-xylene (0.5 mL) provided tert-butyl 4-(2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4-oxo-4H-pyrimido[l,2-b]pyridazin-7-yl)piperidine-lcarboxylate (60 mg, 13%). MS m/z 476.4 [M+H]+.
[001531] Step B: Following the procedure of Example 34, Step D, treatment of tert-butyl 4-(2(4,6-dimethylpyrazolo[l,5-a]pyrazm-2-yl)-4-oxo-4H-pyrimido[l,2-b]pyridazin-7-yl)piperidine1-carboxylate (60 mg, 0.13 mmol) with TFA (1.0 mL) and dichloro methane (1.0 mL) provided the title compound as a yellow solid (47 mg, 100%). MS m/z 376.4 [M+H]+; *H NMR (500 MHz, methanol-74) δ 8.27 - 8.31 (1H, m), 8.06 (1H, d, 7=9.5 Hz), 7.78 (1H, s), 7.57 (1H, d,
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2017204248 22 Jun 2017
7=0.9 Hz), 7.39 (1H, s), 3.25 - 3.30 (2H, m), 3.15 - 3.23 (1H, m), 2.82 - 2.90 (2H, m), 2.79 (3H, s), 2.51 (3H, d, 7=0.9 Hz), 2.02 - 2.09 (2H, m), 1.85 - 1.96 (2H, m).
[001532] Example 61 [001533] Preparation of Cpd 586
Figure AU2017204248B2_D0702
Figure AU2017204248B2_D0703
K2co3,
NMP
Figure AU2017204248B2_D0704
Figure AU2017204248B2_D0705
Br
LHMDS
Pd(dba)2, t-Bu3P HBF4 °C
120 °C
Figure AU2017204248B2_D0706
Boc''
Figure AU2017204248B2_D0707
xOTf
NaH/PhNTf2/DMF ~
b»='O II 0
Figure AU2017204248B2_D0708
Figure AU2017204248B2_D0709
PdCI2dppf K3PO4, dioxane 90 °C
Figure AU2017204248B2_D0710
[001534] Step A: A mixture of 2,5-dibromopyrazine (1.45 g, 6.1 mmol), tert-butyl piperazine1-carboxylate (1.13 g, 6.1 mmol) and K2CO3 (1.26 g, 9.2 mmol) in NMP (6.0 mL) was stirred at 120 °C overnight. The mixture was cooled, then aqueous workup followed by purification with ethyl acetate in dichloromethane (0-15%) provided tert-butyl 4-(5-bromopyrazin-2yl)pipcrazinc-l-carboxylate (1.45 g, 69%). MS m/z 343.3 [M+H]+, 345.3 [M+2+H]+.
[001535] Step B: A mixture of tert-butyl 4-(5-bromopyrazin-2-yl)piperazine-l-carboxylate (1.25 g, 3.6 mmol), LiHMDS (1.0 M, 4.4 mL, 4.4 mmol), Pd(dba)2 (105 mg, 0.18 mmol), PzBu3 HBF4 (53 mg, 0.18 mmol) in toluene (4.4 mL) was stirred at 40 °C overnight under an Ar
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2017204248 22 Jun 2017 atmosphere. The mixture was then cooled, treated with acetonitrile (2.0 mL) and IN HC1 (0.2 mL), stirred for 15 minutes and purified over silica gel with methanol in dichloro methane (010%) to give tert-butyl 4-(5-aminopyrazin-2-yl)piperazine-l-carboxylate (0.96 g, 94%). MS m/z 280.2 [M+H]+.
[001536] Step C: A mixture of tert-butyl 4-(5-aminopyrazin-2-yl)piperazine-l-carboxylate (0.68 g, 2.4 mmol), bis(2,4,6-trichlorophenyl) malonate (1.36 g, 2.9 mmol) in THF (15 mL) was stirred at room temperature for 64 hours. The mixture was then filtered. The solid was washed with ethyl acetate and dried to give tert-butyl 4-(2-hydroxy-4-oxo-4H-pyrazino[l,2-a]pyrimidin7-yl)piperazine-l-carboxylate (0.65 g, 77%). MS m/z 348.3 [M+H]+.
[001537] Step D: Following the procedure in Example 57, Step C, reaction of tert-butyl 4-(2hydroxy-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7-yl)piperazine-l-carboxylate (0.65 g, 1.9 mmol), NaH (60%, 82 mg, 2.1 mmol) and PhNTf2 (0.74 g, 2.1 mmol) in DMF (10 mL) provided tertbutyl 4-(4-oxo-2-(trifluoromethylsulfonyloxy)-4H-pyrazino[ 1,2-a]pyrimidin-7-yl)piperazine-1 carboxylate (0.72 g, 80%). MS m/z 480.2 [M+H]+.
[001538] Step E: Following the procedure in Example 57, Step D, reaction of tert-butyl 4-(4oxo-2-(trifluoromethylsulfonyloxy)-4H-pyrazino[ 1,2-a]pyrimidin-7-yl)piperazine-1 -carboxylate (0.38 g, 0.79 mmol) and 2-methyl-2H-indazol-5-ylboronic acid (0.21 g, 1.2 mmol) in the presence of PdCTdppf (64 mg, 0.08 mmol) an K3PO4 (0.25 g, 1.2 mmol) in dioxane (6.0 mL) provided tert-butyl 4-(2-(2-methyl-2H-indazol-5-yl)-4-oxo-4H-pyrazino[l,2-a]pyrimidin-7yl)piperazine-l-carboxylate (0.22 g, 60%). MS m/z 462.3 [M+H]+.
[001539] Step F: Following the procedure of Example 34, Step D, treatment of tert-butyl 4-(2(2-methyl-2H-indazol-5-yl)-4-oxo-4H-pyr az ino[l,2-a]pyrimidin-7-yl)piperazine-l-carboxylate (0.22 g, 0.48 mmol) with TFA (1.0 mL) and dichloromethane (1.0 mL) provided the title compound as a yellow solid (0.17 mg, 99%). M.P. 160-162 °C; MS m/z 362.3 [M+H]+; *H NMR (500 MHz, methanol-i/4) δ 9.04 (1H, d, 7=1.3 Hz), 8.50 (1H, dd, 7=1.6, 0.9 Hz), 8.18 (1H, s), 7.97 - 8.02 (2H, m), 7.71 (1H, d, 7=9.1 Hz), 7.01 (1H, s), 4.23 (3H, s), 3.61 - 3.67 (4H, m), 3.13-3.20 (4H,m).
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2017204248 22 Jun 2017 [001540] Example 62 [001541] Preparation of Cpd 695
Figure AU2017204248B2_D0711
[001542] Part 1, Step A: Into a suspension of l-(lH-pyrrol-2-yl)ethanone (2.18 g, 20 mmol) in dichloromethane (100 mL) at -78 °C was added a solution of bromine (1.23 mL, 24 mmol) in dichloromethane (25 mL) dropwise over 30 minutes. The mixture was stirred for 10 minutes at 78 °C after the addition and then poured into ice-water. The aqueous layer was extracted with dichloromethane. The organic extracts were combined, dried and evaporated. The residue was purified with ethyl acetate in dichloro methane (0-20%) to give l-(4-bromo-lH-pyrrol-2yl)ethanone (3.48 g, 92%). MS m/z 188.0 [M+H]+, 190.0 [M+2+H]+.
[001543] Part 1, Step B: Into a solution of l-(4-bromo-lH-pyrrol-2-yl)ethanone (3.48 g, 18.5 mmol) in DMF (40 mL) at 0 °C was added NaH (60%, 0.81 g, 20.4 mmol) portionwise. The temperature was allowed to rise to room temperature and 1-chloropropan-2-one (1.54 mL, 19.4 mmol) was added dropwise. The mixture was stirred at room temperature overnight. Aqueous workup followed by purification with ethyl acetate in hexane (5-30%) provided l-(2-acetyl-4bromo-lH-pyrrol-l-yl)propan-2-one (2.9 g, 64%). *H NMR (500 MHz, CDCfi) δ 6.99 (1H, d, 5=1.9 Hz), 6.77 (1H, d, 5=1.6 Hz), 5.00 (2H, s), 2.39 (3H, s), 2.25 (3H, s).
[001544] Part 1, Step C: A mixture of l-(2-acetyl-4-bromo-lH-pyrrol-l-yl)propan-2-one (2.9 g, 11.9 mmol) and ammonium acetate (18 g, 238 mmol) in acetic acid (100 mL) was stirred at 120 °C overnight. The acetic acid was then removed by rotary evaporation, then ice water was added to the residue and the mixture was made basic with NaOH to pH 9. The mixture was extracted with ethyl acetate. The organic extracts were combined, dried, and evaporated. The
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2017204248 22 Jun 2017 residue was purified with ethyl acetate in dichloromethane (0-10%) to provide 7-bromo-l,3dimethylpyrrolo[l,2-a]pyrazine (2.4 g, 90%). MS m/z 225.1 [M+H]+, 227.1 [M+2+H]+.
[001545] Part 1, Step D: Following the procedure in Example 14, Part 2, reaction of 7-bromol,3-dimethylpyrrolo[l,2-a]pyrazine (0.67 g, 3.0 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'bi(l,3,2-dioxaborolane) (0.99 g, 3.9 mmol), PdCl2dppf(0.24 g, 0.3 mmol), KOAc (0.88 g, 9.0 mmol) in dioxane (10 mL) provided l,3-dimethyl-7-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2yl)pyrrolo[l,2-a]pyrazine, which was used directly in the next step without further purification. MS m/z 191.2 [M-pinacol+H]+.
Figure AU2017204248B2_D0712
Figure AU2017204248B2_D0713
[001546] Part 2, Step A: Following the procedure in Example 14, Part 3, Step A, reaction of 2chloro-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.3 g, 1.5 mmol) withl,3-dimethyl-7-(4,4,5,5tetramethyl-l,3,2-dioxaborolan-2-yl)pyrrolo[l,2-a]pyrazine (1.5 mmol) provided 2-(1,3dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.34 g, 74%). MS m/z 309.2 [M+H]+.
[001547] Part 2, Step B: Following the procedure in Example 14, Part 3, Step B, reaction of 2(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7-fluoro-4H-pyrido[l,2-a]pyrimidin-4-one (0.14 g, 0.45 mmol) with 2,6-dimethylpiperazine (0.26 g, 2.27 mmol) provided the title compound as a yellow solid (57 mg, 32%). M.P. 254-256 °C; MS m/z 403.4 [M+H]+; *H NMR (500 MHz, methanol-^) δ 8.20 (1H, d, 7=2.8 Hz), 7.99 (1H, d, 7=1.6 Hz), 7.84 - 7.90 (1H, m), 7.72 (1H, d, 7=0.6 Hz), 7.58 (1H, d, 7=9.5 Hz), 7.25 (1H, t, 7=1.1 Hz), 6.69 (1H, s), 3.60 (2H, d, 7=9.5 Hz), 3.03-3.11 (2H, m), 2.62 (3H, s), 2.37 (2H, t, 7=11.3 Hz), 2.31 (3H, d, 7=0.9 Hz), 1.21 (6H, d, 7=6.3 Hz).
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2017204248 22 Jun 2017 [001548] As shown in Table 1 below, additional compounds disclosed herein may be prepared according to Example 62 by substituting the appropriate starting materials, reagents and reaction conditions.
[001549] Example 63 [001550] Preparation of Cpd 731
Figure AU2017204248B2_D0714
Figure AU2017204248B2_D0715
[001551] Part 1, Step A: Following the procedure in Example 57, Step A, reaction of 5chloropyridin-2-aminc (2.57 g, 20 mmol) and bis(2,4,6-trichlorophcnyl) malonatc (10.2 g, 22 mmol) in THF (100 mL) provided 7-chloro-2-hydroxy-4H-pyrido[l,2-a]pyrimidin-4-one (3.89 g, 97%). *H NMR (500 MHz, DMSO-d^ δ 12.01 (1H, br. s.), 8.89 (1H, d, /=2.2 Hz), 8.10 (1H, dd, /=9.3, 2.4 Hz), 7.44 (1H, d, /=9.5 Hz), 5.19 (1H, br. s.).
[001552] Part 1, Step B: Following the procedure in Example 57, Step C, reaction of 7-chloro2-hydroxy-4H-pyrido[l,2-a]pyrimidin-4-one (3.89 g, 19.8 mmol) withNaH (60%, 0.87 g, 21.8 mmol) and PhNTfi (7.78 g, 21.8 mmol) in DMF (50 mL) provided 7-chloro-4-oxo-4Hpyrido[l,2-a]pyrimidin-2-yl trifluoromethanesulfonate (5.9 g, 91%). MS m/z 370.0 [M+H]+.
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2017204248 22 Jun 2017
Figure AU2017204248B2_D0716
1)BuLi, THF,-78 °C
Figure AU2017204248B2_D0717
Figure AU2017204248B2_D0718
BocHN
RuPhos-Pd/RuPhos NaOBu'
THF, 85 °C
NH
BocHN
PdCI2dppf, K3PO4 dioxane, 100 °C
Figure AU2017204248B2_D0719
Figure AU2017204248B2_D0720
[001553] Part 2, Step A: Into a solution of 7-bromo-l,3-dimethylpyrrolo[l,2-a]pyrazine (1.1 g, 4.9 mmol) in THF (20 mL) at -78 °C was added BuLi (1.6 M, 4.7 mL, 7.5 mmol) dropwise. The mixture was stirred at -78 °C for 30 minutes, triisopropyl borate (1.7 mL, 7.4 mmol) was added. The temperature was allowed to rise to room temperature slowly. The reaction was quenched with water (1.0 mL) and the mixture was evaporated to dryness under vacuum. Into the residue was added 7-chloro-4-oxo-4H-pyrido[l,2-a]pyrimidin-2-yl trifluoromethanesulfonate (1.6 g, 4.9 mmol), PdCfidppf (0.4 g, 0.49 mmol), K3PO4 (1.55 g, 7.3 mmol) and dioxane (40 mL). The mixture was stirred at 100 °C overnight under an Ar atmosphere, after which the mixture was cooled, evaporated and purified through silica with methanol in dichloromethane (0-10%) to give 7-chloro-2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-4H-pyrido[l,2-a]pyrimidin-4-one (0.34 g, 22%). MS m/z 325.2 [M+H]+.
[001554] Part 2, Step B: A mixture of 7-chloro-2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (0.2 g, 0.62 mmol), tert-butyl 4-methylpiperidin-4-ylcarbamate (0.17 g, 0.8 mmol), RuPhos-Pd (22 mg, 0.031 mmol), RuPhos (14 mg, 0.031 mmol) and sodium t-butoxide (83 mg, 0.87 mmol) in THF (1.5 mL) was stirred at 85 °C overnight under an Ar atmosphere. The mixture was then cooled, into which was added acetic acid (1.4 eq) and then purified over silica with methanol in dichloromethane (0-10%) to give tert-butyl 1-(2-(1,3dimethylpyrrolo[ 1,2-a]pyrazin-7-yl)-4-oxo-4H-pyrido[ 1,2-a]pyrimidin-7-yl)-4-methylpiperidin4-ylcarbamate (70 mg, 22%). MS m/z 503.4 [M+H]+.
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2017204248 22 Jun 2017 [001555] Part 2, Step C: The compound tert-butyl 1-(2-( 1,3-dimethylpyrrolo[ l,2-a]pyrazin-7yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-4-methylpiperidin-4-ylcarbamate (70 mg, 0.14 mmol) was treated with HC1 in dioxane (4 N, 1.0 mL) for 30 minutes. The solvent was then removed. The residue was re-treated with ammonia in methanol and evaporated. The residue was purified with methanol in dichloro methane (0-10%) to give the title compound as a yellow solid (36 mg, 64%). M.P. 244-246 °C; MS m/z 403.3 [M+H]+; *H NMR (500 MHz, DMSO-cf) δ 8.22 - 8.27 (2H, m), 8.04 (1H, dd, /=9.8, 2.8 Hz), 7.96 (1H, s), 7.60 (1H, d, /=9.8 Hz), 7.41 (1H, t, /=1.3 Hz), 6.82 (1H, s), 3.25 - 3.30 (4H, m), 2.58 (3H, s), 2.27 (3H, d,/=0.9 Hz), 1.47 - 1.65 (6H, m), 1.10 (3H, s).
[001556] Example 64 [001557] Preparation of Cpd 743
Figure AU2017204248B2_D0721
Figure AU2017204248B2_D0722
THF, H2O
110 °C
Figure AU2017204248B2_D0723
[001558] Step A: A mixture of 7-chloro-2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-4Hpyrido[l,2-a]pyrimidin-4-one (0.14 g, 0.43 mmol) and tert-butyl 4-(4,4,5,5-tetramethyl-l,3,2dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (0.2 g, 0.65 mmol), Pd(OAc)2 (1.9 mg, 0.0086 mmol), SPhos (7.0 mg, 0.0172 mmol) and K3PO4 (0.18 g, 0.86 mmol) in THF (1.0 mL) and water (0.5 mL) was stirred at 110 °C overnight. Aqueous workup followed by purification with methanol in dichloromethane (0-10%) provided tert-butyl 4-(2-(1,3dimethylpyrrolo[ 1,2-a]pyrazin-7-yl)-4-oxo-4H-pyrido[ 1,2-a]pyrimidin-7-yl)-5,6dihydropyridine-l(2H)-carboxylate (0.13 g, 65%). MS m/z 472.3 [M+H]-.
365
2017204248 22 Jun 2017 [001559] Step B: Following the procedure in Example 63, Part 2, Step C, treatment of tertbutyl 4-(2-(1,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-5,6dihydropyridine-1 (2H)-carboxylate (0.13 g, 0.28 mmol) with HC1 in dioxane (1.0 mL) provided the title compound as a yellow solid (5 mg, 5%). M.P. 189-191 °C; MS m/z 372.3 [M+H]+; *H NMR (500 MHz, methanol-</4) δ 8.81 (1H, d, /=1.9 Hz), 8.03 (2H, d, /=1.6 Hz), 7.71 (1H, s), 7.62 (1H, d, /=9.5 Hz), 7.28 (1H, s), 6.76 (1H, s), 6.41 - 6.50 (1H, m), 3.58 (2H, d, /=2.5 Hz), 3.15 (2H, t, /=5.8 Hz), 2.63 (3H, s), 2.54 (2H, br. s.), 2.32 (3H, d, /=0.6 Hz).
[001560] Example 65 [001561] Preparation of Cpd 804
Figure AU2017204248B2_D0724
Figure AU2017204248B2_D0725
[001562] Step A: 5-fluoro-2-nitropyridine (200 mg, 1.41 mmol), tert-butyl 2,7-diazaspiro[3.5]nonane-2-carboxylate (319 mg, 1.41 mmol) and K2CO3 (195 mg, 1.41 mmol) were combined in DMSO (8 mL). The reaction mixture was heated at 70°C for 15 hours and cooled to room temperature, before the solvent was evaporated. An extraction (CH2CI2 and H2O) followed by chromatography with silica gel (CH?CL/McOH: 98/2) gave 7-(6-nitro-pyridin-3-yl)-2,7-diazaspiro[3.5]nonane-2-carboxylic acid tert-butyl ester (320 mg, 65%) as a yellow solid. MS m/z 349.5 [M+H]+.
[001563] Step B: 7-(6-nitro-pyridin-3-yl)-2,7-diaza-spiro[3.5]nonane-2-carboxylic acid tertbutyl ester (315 mg, 0.90 mmol) and Pd/C (32 mg) were combined in MeOH (40 mL) and placed under a hydrogen atmosphere (H2 balloon) for 15 hours. The reaction mixture was filtered through celite and chromatographed with silica gel (CTLCL/McOH: 98/2) to give 7-(6-amino366
2017204248 22 Jun 2017 pyridin-3-yl)-2,7-diaza-spiro [3.5]nonane-2-carboxylic acid tert-butyl ester (227 mg, 78%) as an off-white solid. MS m/z 319.6 [M+H]+.
[001564] Step C: A mixture of 7-(6-amino-pyridin-3-yl)-2,7-diaza-spiro[3.5]nonane-2carboxylic acid tert-butyl ester (100 mg, 0.31 mmol), ethyl 3-(4,6-dimethylpyrazolo[l,5a]pyrazin-2-yl)-3-oxopropanoate (90 mg, 0.31 mmol, preparation described in Example 9, Steps A to F) and PPTs (87 mg, 0.345 mmol) in methyl-1-butanol (2 mL) was heated at 160°C for 15 hours. The mixture was cooled to room temperature, poured into an aqueous NaOH (IM) solution and extracted with CH2CI2. The combined organic phases were dried over Na2SO4 and the residue was chromatographed with silica gel (CTLCWMeOH: 9/1; and, 1% aqueous NH3) to give the title product (40 mg, 31%) as a yellow solid. MS m/z 416.2 [M+H]+. *H NMR (CDCI3, 600 MHz) δ 8.18 (d, J=1.1 Hz, 1H), 8.15 (s, 1H), 7.45 (dd, 1H) 7.80 (d, 1H), 7.32 (s, 1H), 7.11 (s, 1H), 3.51 (m, 2H), 3.42 (d, 1H), 3.36 (d, 1H), 3.15 (m, 2H), 3.00 (d, 1H), 2.97 (d, 1H), 2.79 (s, 3H), 2.52 (s, 3H), 2.10 (m, 2H), 1.89 (m, 2H).
[001565] Example 66 [001566] Preparation of Cpd 811
Figure AU2017204248B2_D0726
F F
Figure AU2017204248B2_D0727
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2017204248 22 Jun 2017 [001567] Step A: 5-Bromopyridin-2-amine (1.0 g, 5.8 mmol) in THF (20 mL), cooled to -78°C under Ar, was combined with n-BuLi (3.6 ml, 5.8 mmol, 1.6 M in hexanes) and stirred for 0.5 hours. 1,2-Bis(chlorodimethylsilyl)ethane (1.2 g, 5.8 mmol) in THF (10 mL) was added and the mixture was allowed to warm to ambient temperature over 1 hour. The mixture was then recooled to -78°C and a second equivalent of n-BuLi (3.6 ml, 5.8 mmol, 1.6 M in hexanes) was added. The mixture was stirred for 0.5 hours at -78°C and then allowed to warm to ambient temperature over 1 hour. The mixture was then re-cooled to -78°C and a third equivalent of nBuLi (3.6 ml, 5.8 mmol, 1.6 M in hexanes) was added. The mixture was stirred for 1 hour at 78°C, then tert-butyl 4-oxopiperidine-l-carboxylate (1.3 g, 6.4 mmol) in THF (10 mL) was added and the reaction was allowed to come to ambient temperature. The mixture was diluted with EtOAc, washed with brine, dried (Na2SO4) and concentrated. The residue was eluted from silica with EtOAc (0-100%) in n-heptane to afford tert-butyl 4-(6-aminopyridin-3-yl)-4hydroxypiperidine-1-carboxylate as a light yellow solid (1.1 g, 64%). MS m/z 294.2 [M+H]+.
[001568] Step B: A mixture ofbis(2,4,6-trichlorophenyl) malonate (0.80 g, 1.7 mmol) and tertbutyl4-(6-aminopyridin-3-yl)-4-hydroxypiperidine-l-carboxylate (0.50 g, 1.7 mmol) was heated in toluene (10 mL) at 60°C for 2 hours. The reaction was concentrated to remove the volatiles. The residue was eluted from silica with MeOH (0-20%) in CH2C12 to afford tert-butyl 4hydroxy-4-(2-hydroxy-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)piperidine-l-carboxylate as a light yellow solid (0.43 g, 70%). MS m/z 362.3 [M+H]+.
[001569] Step C: A mixture of tert-butyl 4-hydroxy-4-(2-hydroxy-4-oxo-4H-pyrido[l,2a]pyrimidin-7-yl)piperidine-l-carboxylate (0.17 g, 0.5 mmol), 1,1,1-trifhioro-N-phenyl-N(trifhioromethylsulfonyl)methanesulfonamide (0.19 g, 0.5 mmol) and potassium carbonate (0.13 g, 0.9 mmol) in DMF (3 mL) was stirred at ambient temperature. After 1 hour, the mixture was diluted with EtOAc, washed with water, brine, dried (Na2SO4) and concentrated. The residue was eluted from silica with EtOAc (10-50%) in n-heptane to afford tert-butyl 4-hydroxy-4-(4oxo-2-(trifluoromcthylsulfonyloxy)-4H-pyrido[l,2-a]pyrimidin-7-yl)pipcridinc-l-carboxylatc as a crystalline yellow solid (0.08 g, 35%). MS m/z 494.3 [M+H]+.
[001570] Step D: Following the procedure in Example 15, Step A, tert-butyl 4-hydroxy-4-(4oxo-2-(trifluoromethylsulfonyloxy)-4H-pyrido[l,2-a]pyrimidin-7-yl)piperidine-l-carboxylate (80 mg, 0.16 mmol), 8-fluoro-2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2yl)imidazo[l,2-a]pyridine (67 mg, 0.24 mmol, Prepared in Example 16, Step B),
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2017204248 22 Jun 2017 tetrakis(triphenylphosphine)palladium(0) (9 mg, 0.01 mmol) and K2CO3 (31 mg, 0.32 mmol) in MeCN/water (2 ml/ 0.3 mL) provided tert-butyl 4-(2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6yl)-4-oxo-4H-pyrido[l,2-a]pyrimidin-7-yl)-4-hydroxypiperidine-l-carboxylate as an off-white crystalline solid (60 mg, 75%). MS m/z 494.5 [M+H]+.
[001571] Step E: Following the procedure in Example 24, Step B, the above product from Step D and HC1 in dioxane (4M, 2 mL) provided 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6yl)-7-(4-hydroxypiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one as a white solid (11 mg, 49%). MS m/z 394.4 [M+H]+. *HNMR (DMSO-J6, 300 MHz) δ 9.31 (d, J= 1.2 Hz, 1H), 9.01 (d, J = 1.8 Hz, 1H), 8.12 (dd, J = 9.3, 1.8 Hz, 1H), 7.96 (d, J = 2.4Hz, 1H), 7.88 (dd, J = 12.6, 1.2 Hz, 1H), 7.75 (d, J = 9.3 Hz, 1H), 7.06 (s, 1H), 5.34 (br s, 1H), 2.91 (apparent t, J = 12.0 Hz, 2H), 2.79 (d, J = 12.0 Hz, 2H), 2.39 (s, 3H), 1.89-1.84 (m, 2H), 1.60 (d, J = 12.0 Hz, 2H).
[001572] Tabic 1 provides isolated compounds of a free base form of a compound of Formula (I) that may be prepared according to the procedures of the indicated Example by substituting the appropriate starting materials, reagents and reaction conditions. The preparation of any salt, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer from a free base form of a compound of Formula (I) is also contemplated and further included within the scope of the description herein. Where a free base form of the compound was not isolated from the salt form, a person of ordinary skill in the art could be expected to perform the required reactions to prepare and isolate the free base form of the compound.
[001573] The term “Cpd” represents Compound number, the term “Ex” represents “Example Number” (wherein * indicates that the corresponding Example for the Compound is provided above), the term “M.P.” represents “Melting Point (°C),” the term “MS” represents “Mass Spectroscopy Peak(s) m/z [M+H]+, [M+2+H]+, [M-H]‘ or [M+2-H]’,” the term “D” represents “Decomposition/Decomposed,” the term “DR” represents “Decomposition Range,” the term “S” represents “Softens,” the term “ND” indicates that the value was “Not Determined” and the term “NI” indicates that the compound was “Not Isolated.” [001574] Table 1
Ex Cpd Name M.P. MS
4* 1 2-(4-methoxyphenyl)-7-(piperazin-l-yl)-4H- 182-184 337.3 pyrido [ 1,2-a]pyrimidin-4-one
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Ex Cpd Name M.P. MS
4 2 2-(4-methoxyphenyl)-7-(4-methylpiperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 178-182 351.3
4 3 2-(4-methoxyphenyl)-7-[(3R)-3-methylpiperazin-1 - yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 152-154 351.3
4 4 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 185-187 365.3
4 5 7-(1,4-diazepan-1 -yl)-2-(4-methoxyphenyl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 149-152 351.3
3* 6 2-(3,4-dimethoxyphenyl)-7-(piperaz in-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 182-184 367.5
3 7 2-(3,4-dimethoxyphenyl)-7-(3,3-dimethylpiperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 138-140 395.3
3 8 2-(3,4-dimethoxyphenyl)-7-[(3R)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-onc 181-184 381.3
3 9 2-(3,4-dimethoxyphenyl)-7-(4-ethylpiperaz in- 1-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 159-162 395.3
3 10 7-(1,4-diazepan-1 -yl)-2-(3,4-dimethoxyphenyl)-4H- pyrido [ 1,2-a]pyrimidin-4-one ND 381.3
3 11 2-(3,4-dimethoxyphenyl)-7-(4-methyl-1,4-diazepan- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 166-168 395.3
3 12 2-(4-methoxyphenyl)-7-[(3S)-3-methylpiperazin-l- yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 158-160 351.3
3 13 2-(3,4-dimethoxyphenyl)-7-(4-methylpiperaz in-1- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 183-185 381.3
3 14 2-(3,4-dimethoxyphenyl)-7-[(3R,5S)-3,5- dimethylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin- 4-one 182-187 395.3
3 15 2-(3,4-dimethoxyphenyl)-7-(4-propylpiperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 185-189 409.3
4 16 2-(4-methoxyphenyl)-7-(4-methyl-1,4-diazepan-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 137-141 365.3
4 17 7-(3,3-dimethylpiperazin-l-yl)-2-(4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one ND 365.3
4 18 2-( 1,3-benzodioxol-5-yl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 198-201 351.3
4 19 2-( 1,3-benzodioxol-5-yl)-7-(4-methylpiperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 235-237 365.2
4 20 2-(l,3-benzodioxol-5-yl)-7-[(3R)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one 195-197 365.3
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Ex Cpd Name M.P. MS
4 21 2-(l,3-benzodioxol-5-yl)-7-[(3R,5S)-3,5- dimethylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin- 4-one 198-201 379.3
4 22 2-(3-methoxyphenyl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 147-149 337.2
4 23 2-(3-methoxyphenyl)-7-(4-methylpiperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 173-175 351.2
4 24 2-(3-methoxyphenyl)-7-[(3R)-3-methylpiperazin-1 - yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 164-166 351.2
4 25 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(3- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 189-191 365.3
4 26 7-(4-ethylpiperazin-1 -yl)-2-(3-methoxyphenyl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 158-160 365.3
4 27 7-(1,4-diazcpan-l -yl)-2-(3-metho xyphcnyl)-4Hpyrido[l ,2-a]pyrimidin-4-one ND 351.2
4 28 2-(3-methoxyphenyl)-7-(4-methyl-1,4-diazepan-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 130-132 365.2
8* 29 2-(6-methylimidazo[l,2-a]pyridin-2-yl)-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 193-198 361.3
3 30 2-(3,4-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one 153-158 381.3
4 31 2-(2,3-dihydro-l ,4-benzodioxin-6-yl)-7-(piperazin-l - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 230-232 365.3
4 32 2-(2,3-dihydro-l,4-benzodioxin-6-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 205-207 379.3
3 33 2-phenyl-7-(piperazin-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 151-153 307.2
3 34 7-[(3S)-3-methylpiperazin-l-yl]-2-phenyl-4H- pyrido [ 1,2-a]pyrimidin-4-one 170-173 321.3
4 35 2-(2,3-dihydro-l,4-benzodioxin-6-yl)-7-[(3R)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 212-214 379.2
4 36 2-(2,3-dihydro-l,4-benzodioxin-6-yl)-7-(3,3dimethylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 196-198 393.3
4 37 2-(2,3-dihydro-l,4-benzodioxin-6-yl)-7-[(3R,5S)- 3,5 -dimethylpiperazin-1 -yl]-4H-pyrido [1,2a]pyrimidin-4-one 247-250 393.3
371
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
4 38 7-(1,4-diazepan-1 -yl)-2-(2,3-dihydro-1,4- benzodioxin-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 180-182 379.3
4 39 2-(2,3-dihydro-l, 4-benzodioxin-6-yl)-7-(4-methyl- 1,4-diazepan-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 150-152 393.3
1 40 2-(3,4-dimethoxyphenyl)-9-fluoro-7-(4- methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4- one 183-185 399.3
1 41 2-(3-chlorophenyl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 185-189 341.2
1 42 2-(4-chlorophenyl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 207-212 341.2
1 43 7-(piperazin-l-yl)-2-[3-(trifluoro methyl)phenyl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 199-207 375.2
1 44 7-(pipcrazin-l-yl)-2-[4-(trifluoromcthyl)phcnyl]-4H- pyridofl ,2-a]pyrimidin-4-one 285 (D) 375.2
1 45 2-(3-methylphenyl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 183-187 321.2
1 46 2-(4-fluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 214-218 325.2
1 47 2-(4-nitrophenyl)-7-(piperazin-l -yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 237-242 352.2
1 48 2-(3,4-dimethoxyphenyl)-9-fluoro-7-(piperidin-4- ylamino)-4H-pyrido[ 1,2-a]pyrimidin-4-one 224-226 399.3
3 49 2-[4-(dimethylamino)phenyl]-9-fluoro-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 216-218 368.3
3 50 2-[4-(dimethylamino)phenyl]-9-fluoro-7-[(3R)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 205-207 382.3
1 51 2-(2-fluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 142-146 325.2
28* 52 3-(3,4-dimethoxyphenyl)-8-(piperaz in-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 175-179 367.2
3 53 2-[4-(dimethylamino)phenyl]-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 211-215 350.3
3 54 2- [4-(dirnethylamino)phenyl] -7- [(3 S)-3 - methyip iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 199-202 364.3
3 55 2-(3,4-dimethylphenyl)-7-(piperaz in-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 186-188 335.2
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Ex Cpd Name M.P. MS
3 56 2-(3,4-dimethylphenyl)-7-[(3S)-3-methylpiperazin-l- yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 207-209 349.3
3 57 2-[3-(dimethylamino)phenyl]-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 178-180 350.2
3 58 2-[3-(dimethylamino)phenyl]-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 144-146 364.3
3 59 2-[4-(difluoromethoxy)phenyl]-7-(piperazin-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 131-133 373.5
3 60 2-[4-(difluoromethoxy)phenyl]-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 166-168 387.2
1 61 2-(3-fluorophenyl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 153-156 325.2
1 62 2-(3-nitrophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 175 (D) 352.2
1 63 2-(4-methylphenyl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 192-195 321.2
3 64 2-(2-fluoro-4,5-dimethoxyphenyl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 177-180 385.2
3 65 2-(2-fluoro-4,5-dimethoxyphenyl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 167-170 399.2
3 66 7-(3,8-diazabicyclo[3.2.1]oct-3-yl)-2-(3,4- dimethoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 158-161 393.3
1 67 2-[4-methoxy-3-(trifluoromethyl)phenyl]-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 177-181 405.1
1 68 2-[4-methoxy-3-(trifluoromethyl)phenyl]-7-[(3R)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 205-212 419.3
1 69 2- [4-methoxy-3 -(trifluoromethyl)phenyl] -7- [(3 S)-3 mcthylpipcrazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 195-200 419.3
6* 70 2-(3,4-dimethoxyphenyl)-9-methoxy-7-(piperazin-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 185-187 397.3
11 71a 2-(3,5-difluoro-4-hydroxyphenyl)-7-(piperaz in-1-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one NI NI
1* 72 2-(3-fluoro-4-methoxyphenyl)-7-(piperazin-1 -yl)- 191-195 355.0
4H-pyrido [ 1,2-a]pyrimidin-4-one
373
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
3 73 4-[4-oxo-7-(piperazin-1 -yl)-4H-pyrido [ 1,2- a]pyrimidin-2-yl]benzo nitrile 146-151 332.1
y* 74 2-(6-methylimidazo[l,2-a]pyrazin-2-yl)-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 221-225 362.2
7 75 2-(6-methylimidazo[l,2-a]pyrazin-2-yl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 235-238 376.2
1 76 2-[3-fluoro-5-(trifluoromethyl)phenyl]-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 393
1 77 2-[4-fluoro-3-(trifluoromethyl)phenyl]-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 214-217 393.1
1 78 2-[2-methoxy-3-(trifluoromethyl)phenyl]-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 194-200 405.1
1 79 2-(3,5-difluorophcnyl)-7-(pipcrazin-l-yl)-4H- pyridofl ,2-a]pyrimidin-4-one 195-198 343
1 80 7-(piperazin-1 -yl)-2-[3-(trifluoro metho xy)phenyl]- 4H-pyrido [ 1,2-a]pyrimidin-4-one 140-143 391
5* 81 2-[4-methoxy-3-(trifluorometho xy)phenyl]-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 158-162 421.1
5* 82 2-[4-hydroxy-3-(trifluoro metho xy)phcnyl]-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 245-248 407.2
5 83 2- [4-methoxy-3-(trifluoromethoxy)phenyl]-7-[(3S)- 3- methylpiperazin-1-yl]-4H-pyrido [ 1,2-a]pyrimidin- 4- one 176-178 435.9
5 84 2- [4-hydroxy-3-(trifluoromethoxy)phenyl]-7-[(3S)- 3- methylpiperazin-1-yl]-4H-pyrido [ 1,2-a]pyrimidin- 4- one 152-155 421.2
31* 85 2-(3,4-dimethoxyphenyl)-4-oxo-7-(piperazin-l-yl)- 4H-quinolizine-1 -carbonitrile 199-202 391.2
1 86 2-(3-fluoro-4-methoxyphenyl)-7-[(3R)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 175-178 369.1
1 87 2-(3-fluoro-4-methoxyphenyl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 175-178 369.1
1 88 2-(6-methoxypyridin-3-yl)-7-(piperazin-1-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 173-178 338.2
1 89 2-(2,4-dimethoxyphenyl)-7-(piperaz in- l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 171-173 367.3
374
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
1 90 2-(2,4-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one 172-177 381.2
32* 91 2-(3,4-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin- 1 -yl]-4H-quinolizin-4-one 243-245 380.2
11* 92 2-(5-fluoropyridin-3-yl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 201-208 326.2
11 93 2-(5-fluoropyridin-3-yl)-7-[(3S)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one 191-199 340.1
11 94 2-(5-chloropyridin-3-yl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 208-218 342
11 95 2-(5-chloropyridin-3-yl)-7-[(3S)-3-methylpiperazin- 1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one 227-232 356
1 96 2-(5-chloro-6-methoxypyridin-3-yl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-onc 201-209 372.1
12 97 2-( 1H-indo l-6-yl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 202-206 346.2
12* 98 2-(lH-indol-5-yl)-7-(piperazin-l-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 266-272 346.2
3 99 2-[3-(difluoromethoxy)-4-methoxyphenyl]-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 403.4
3 100 2-[3-(difluoromethoxy)-4-hydroxyphenyl]-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 233-237 389.2
3 101 2- [3-(difluoromethoxy)-4-methoxyphenyl]-7-[(3S)- 3- methylpiperazin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin- 4- one 167-169 417
3 102 2-[3-(difluoromethoxy)-4-hydroxyphenyl]-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 192-197 403.2
33 103 2-(3-fluoro-4-methoxyphenyl)-7-(piperazin-l-yl)- 4H-quinolizin-4-one 200-202 354.1
33 104 2-(3-fluoro-4-methoxyphenyl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-quinolizin-4-one 188-192 368.1
1 105 2-(3,5-difluorophenyl)-7-[(3S)-3-methylpiperaz in-1- yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 189-194 357.2
33* 106 2-(3,4-dimethoxyphenyl)-7-(piperaz in-l-yl)-4Hquinolizin-4-one 170-172 366.1
13* 107 2-(imidazo[l,2-a]pyridin-7-yl)-7-(piperazin-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 258-270 347
12 108 2-(imidazo [ 1,2-a]pyridin-6-yl)-7-(piperazin-1 -yl)- ND 347
4H-pyrido [ 1,2-a]pyrimidin-4-one
375
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
15* 109
2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-(piperazin- 259-267
-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one
110 2-(3-chloro-4-methoxyphenyl)-7-(piperazin-l-yl)4H-pyrido [ 1,2-a]pyrimidin-4-one
111
112
113
361.1
371.4,
373.4
2-(3-chloro-4-methoxyphenyl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one
2-(3-ethoxy-4-methoxyphenyl)-7-(piperazin-1 -yl)4H-pyrido [ 1,2-a]pyrimidin-4-one
2-(3-ethoxy-4-methoxyphenyl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one
114 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one
115 2-(2-methylimidazo[l,2-a]pyridin-6-y 1)-7-[(3 S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one
187-189
194-196
159-162
385.5,
387.5
381.1
395.1
ND 375.1
ND 375.1
116 7-(1,4-diazepan-1 -yl)-2-(2-methylimidazo [1,2- a]pyridin-6-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 375.1
117 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 181-186 389.1
118 2-(6,8-dimethylimidazo[l,2-a]pyr az in-2-yl)-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 189-192 376.5
119 2- (6,8-dimcthylimidazo[l,2-a]pyr az in-2-yl)-7-[(3S)- 3- methylpiperazin-l-yl]-4H-pyrido[1,2-a]pyrimidin- 4- one 202-208 390.5
376.5
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one
120
121
2- (4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[(3 S)- 192-194
3- methylpiperazin-1-yl]-4H-pyrido [ 1,2-a]pyrimidin-
4- one
390.5
22 122
15 123
15 124
2-(3,4-dimethoxyphenyl)-7-(2-methylpyridin-4-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 197-200 374
7-(piperazin-l-yl)-2-[2-(trifluoromethyl)imidazo[l,2- a]pyridin-6-yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 250-255 415.5
2-(2-ethylimidazo[l,2-a]pyridin-6-yl)-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 228-232 375.5
376
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
15 125 2-(2,3-dimethylimidazo[l,2-a]pyridin-6-yl)-7- (p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 236-240 375.5
2 126 2-(3,4-dimethoxyphenyl)-7-[(3aR,6aS)hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 286-290 393.1
2 127 7-(4-aminopiperidin-l-yl)-2-(3,4-dimethoxyphenyl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 182-185 381.1
19* 128 7-(piperazin-l-yl)-2-(lH-pyrrolo[2,3-b]pyridin-5-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 252-255 347.1
19 129 2-( 1 -methyl-1 H-pyrrolo[2,3-b]pyridin-5-yl)-7(p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 230-233 361.1
19 130 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(l-methyl- 1 H-pyrrolo [2,3 -b]pyridin-5 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 265-268 389.1
9 131 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(4,6dimethy lp yr azolof 1,5-a]pyr azin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 404.5
9 132 7-(1,4-diazepan-1 -yl)-2-(4,6-dimethylpyrazolo [1,5- a]pyrazin-2-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 390.5
14 133 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(piperazin-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 219-222 362.5
14 134 2-(2-methyl-l,3-benzoxazol-6-yl)-7-[(3S)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 191-193 376.5
14 135 2-(2-methyl-l,3-benzothiazol-5-yl)-7-[(3S)-3methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 174-180 392.2
14 136 2-(2-methyl-l,3-benzothiazol-5-yl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 228-230 378.1
14 137 2-(2-methyl-2H-indazol-5-yl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 175-180 361.5
14 138 2-(2-methyl-2H-indazol-5-yl)-7-[(3S)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 166-170 375.5
14 139 2-(3-fluoro-5-methoxyphenyl)-7-(piperazin-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 168-170 355.5
14 140 2-(3-fluoro-5-methoxyphenyl)-7-[(3S)-3- 154-156 369.5
methyip iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
16 141 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 270-274 375.1
2 142 2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 176-182 395.5
22* 143 2-(3,4-dimethoxypheny 1)-7-( 1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 196-198 364.1
24* 144 2-(3,4-dimethoxyphenyl)-7-(piperidin-4-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 214-217 366.4
1 145 2-(3-fluoro-4,5-dimethoxyphenyl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 385.5
3 146 2-(3,4-dimethoxyphenyl)-7-(4-hydroxypiperazin-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 202-204 383.5
2 147 2-(3,4-dimethoxyphenyl)-7-[(3S)-3- (dimeihy lamino)pyrro lidin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 156-158 395.4
2 148 2-(3,4-dimethoxypheny 1)-7-[4(dimethylamino)piperidin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 158-161 409.1
14 149 2-(4-methoxy-3-methylphenyl)-7-(piperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 198-203 351.5
14 150 3-[4-oxo-7-(piperazin-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-2-yl]benzo nitrile 224-231 332.1
14 151 2-methoxy-5-[4-oxo-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-2-yl]benzonitrile 191-197 362
14 152 2-(3-fluoro-4-hydroxyphenyl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 259-266 341.5
20* 153 2-(4-ethoxy-3-fluorophenyl)-7-(piperazin-1-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 180-186 369.1
20 154 2-[3-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]-7- (pipcrazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-onc 198-201 423.1
14 155 2-(2-methyl-l,3-benzoxazol-5-yl)-7-(piperazin-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 178-183 362
14 156 2-(2-methyl-l,3-benzoxazol-5-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4one ND 376.5
14 157 2-(3-fluoro-4-methylphenyl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 174-176 339.5
378
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
14 158 2-(3-fluoro-4-methylphenyl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 175-178 353.5
2 159 7-[(3S)-3-aminopyrrolidin-l-yl]-2-(3,4- dimethoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 148-151 367.1
2 160 2-(3,4-dimethoxyphenyl)-9-methyl-7-(piperazin-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 175 (S), 216-222 381.1
14 161 7-(1,4-diazepan-l -yl)-2-(2-methyl-1,3-benzothiazol- 5 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 208-212 392.2
10 162 7-[(3S)-3-methylpiperazin-l-yl]-2-(4-methyl-l,3- thiazol-2-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 225-230 342.1
10* 163 2-(4-methyl-l,3-thiazol-2-yl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 142-147 328.2
25* 164 2-(3,4-dimcthoxyphcny 1)-7-( 1 -mcthylpipcridin-4-yl)- 4H-pyrido[l ,2-a]pyrimidin-4-one 181-183 380.1
2 165 2-(3,4-dimethoxyphenyl)-7-[(3S)-3-(propan-2ylamino)pyrro lidin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin4-one 169-172 409.1
1 166 2-(3-fluoro-4-methoxyphenyl)-7-(4-methyl-l,4- diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 176-178 383.1
14 167 2-(4-methoxy-3-nitrophenyl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 183-187 382.5
14 168 2-[3-fluoro-4-(methylsulfanyl)phenyl]-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 174-176 371.1
15 169 7-(4-methyl-1,4-diazepan-1 -yl)-2-(2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 208-213 389.1
9* 170 2-(4,6-dimethylpyr azo lo[l,5-a]pyrazin-2-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 254-256 390.4
14* 171 2-(2-methyl-1,3 -benzoxazo l-6-yl)-7-(4mcthylpipcrazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 178-183 376.5
14 172 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(2-methyll,3-benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4one 233-235 390.3
17 173 2-(5-fluoro-6-methoxypyridin-3-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 175-180 370.5
379
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
17 174 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(5-fluoro- 6-methoxypyridin-3 -yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 160-165 384.5
14 175 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(2-methyll,3-benzothiazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4one 208-212 406.1
14 176 2-(2-methyl-l,3-benzothiazol-5-yl)-7-(4- methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 214-218 392.1
14 177 2-(2-methyl-l,3-benzothiazol-5-yl)-7-(4-methyl-l,4- diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 165-170 406.1
14 178 7-[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(2-methyl-1,3 -benzothiazo 1-5 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 254-256 418.1
21* 179 2-(4-methyl-1 H-imidazol-1 -yl)-7-(piperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 204-206 311.1
21 180 2-(4-methyl-1 H-imidazol-1 -yl)-7-[(3 S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 204-206 325.5
2 181 2-(3,4-dimethoxypheny 1)-7- {[2- (methylamino)ethyl]amino} -4H-pyrido [ 1,2a]pyrimidin-4-one 135-138 355
17* 182 2-(5-fluoro-6-methoxypyridin-3-yl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 166-170 356.4
17 183 2-(3,5-difluoro-4-methoxyphenyl)-7-(piperaz in-1- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 167-169 373.4
17 184 2-(3,5-difluoro-4-methoxyphenyl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 182-184 387.5
2 185 7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fluoro-4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 196-201 397.1
2 186 2-(3-fluoro-4-methoxyphenyl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 182-184 352
2 187 2-(3,4-dimethoxyphenyl)-7-(piperidin-4-ylamino)- 4H-pyrido [ 1,2-a]pyrimidin-4-one ND 381.1
23* 188 2-(3,4-dimethoxypheny 1)-7-( 1-methyl-1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 165-168 378.3
380
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
14 189 2-(3-chloro-5-fluorophenyl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 188-190 373
14 190 2-(3-chloro-5-fluorophenyl)-7-(piperazin-l-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 180-184 359.1
18* 191 7-[(3 S)-3-methyip iperazin-1 -yl]-2-( 1 -methyl-1Hpyrazo l-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 168-170 325.2
18 192 2-( 1 -methyl-1 H-pyrazol-4-yl)-7-(p iperazin-1 -yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 311.1
14 193 2-(2-methyl-l,3-benzoxazol-6-yl)-7-[(3R)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- 175-177 376.5
one
194 7-(3,3-dimethylpiperazin-1 -yl)-2-(2-methyl-1,3- benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 160-162 390.5
195 7-(1,4-diazepan-1 -yl)-2-(2-methyl-1,3-benzoxazol-6- y l)-4H-pyrido [ 1,2-a]pyrimidin-4-one 134-137 376.5
196 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(4-methyl-l,4- diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 146-150 390.5
197 7-[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(2-methyl-l,3-benzoxazol-6-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 214-217 402.5
198 7-[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(2-methyl-l,3-benzoxazol-6-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 194-199 402.5
199 2-(4,5-dimethoxypyridin-2-yl)-7-(piperaz in-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 207-209 368.4
200 7-[3-(dimethylamino )pyrro lidin-1-yl]-2-(3-fluoro-4- methoxyphenyl)-4H-quinolizin-4-one 259-261 382.1
201 7-(4-aminopiperidin-l-yl)-2-(3-fluoro-4- methoxyphenyl)-4H-quinolizin-4-one ND 368.2
202 7-(4-ethylpiperazin-1 -yl)-2-(2-methyl-1,3- bcnzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-onc 212-216 390.5
203a 7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fluoro-4- methoxyphenyl)-4H-quinolizin-4-one NI NI
204 2-(3-fluoro-4-methoxyphenyl)-7-( 1 -methyl-1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 129-132 366
187-192
383.1
205 7-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-2-(3fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one
381
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
2 206 7-[(3R,4R)-3-(dimethylamino)-4-hydroxypyrrolidin- 1-yl]-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one 223-228 399
2 207 7-(4-aminopiperidin-l-yl)-2-(3-fluoro-4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 173-179 369.1
2 208 2-(3-fluoro-4-methoxyphenyl)-7-[4- (methylamino )piperidin-1 -yl]-4H-pyrido [1,2a]pyrimidin-4-one 167-171 383.1
16* 209 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 282-288 379.4
16 210 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(8-fluoro2-methylimidazo [ 1,2-a]pyridin-6-yl)-4H-pyrido [1,2a]pyrimidin-4-one 255-259 407.1
16 211 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7(4-methyl-1,4-diazepan-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 262-266 407.6
2 212 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 195-200 381.1
2 213 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5methylhexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 204-210 395.1
25 214 2-(3,4-dimethoxypheny 1)-7-[ 1-(2- hydroxyethyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 145-148 410
14 215 2-(4-fluoro-3-methoxyphenyl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 130-135 369.2
14 216 2-(4-fluoro-3-methoxyphenyl)-7-(piperazin-1 -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 170-172 355.2
14 217 2-(3,4-difluoro-5-methoxyp heny 1)-7-[(3 S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 160-164 387.1
14 218 2-(3,4-difluoro-5-methoxyphenyl)-7-(piperaz in-1- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 155-160 373.1
14 219 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(piperazin-l- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 218-220 378.1
29* 220 7-(3-fluoro-4-methoxyphenyl)-2-(piperazin-1 -yl)- 202-206 355
4H-pyrido [ 1,2-a]pyrimidin-4-one
382
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
14 221 2-(2-methyl-l,3-benzothiazol-6-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 214-216 392.1
2 222 2-(3-fluoro-4-methoxyphenyl)-7-[(3S)-3- (methylamino)pyrro lidin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 208-216 369.1
2 223 2-(3-fluoro-4-methoxyphenyl)-7-{4- [(methylamino)methyl]piperidin-1 -yl} -4Hpyrido [ 1,2-a]pyrimidin-4-one 163-170 397.1
2 224 7-[(3S)-3-aminopyrrolidin-l-yl]-2-(3-fluoro-4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 193-198 355
2 225 2-(3-fluoro-4-methoxyphenyl)-7- {[(3R)-1 methy lp yrro lidin-3-yl] amino }-4H-pyrido[ 1,2a]pyrimidin-4-one 197-202 369.1
2 226 7- {4-[(dimethylamino)methyl]piperidin-1 -yl}-2-(3fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one 178-185 411.1
14 227 2-(6-methoxypyridin-2-yl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 214-218 338.1
14 228 7-(piperazin-1 -yl)-2-(pyridin-3 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 175-178 308
14 229 2-(5-methoxypyridin-3-yl)-7-(piperazin-1 -yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 192-195 338
14 230 3-fluoro-5-{7-[(3S)-3-methylpiperazin-l-yl]-4-oxo- 4H-pyrido[l,2-a]pyrimidin-2-yl} benzonitrile 185-188 364.2
14 231 3 -fluoro-5 - [4-oxo-7-(pipcrazin-1 -yl)-4H-pyrido [1,2a]pyrimidin-2-yl]benzonitrile 238-244 350.1
2 232 2-(3-fluoro-4-methoxyphenyl)-7-[(3'S,4'S)-4'hydroxy-1,3 '-b ip yrro lidin-1 '-yl] -4H-pyrido [1,2a]pyrimidin-4-one 226-232 425.1
2 233 2-(3-fluoro-4-methoxyphenyl)-7-{methyl[(3R)pyrrolidin-3-yl]amino} -4H-pyrido [ 1,2-a]pyrimidin4-one 143-147 369.1
14 234 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(2-methyl-l,3- benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 205-209 390.6
27 235 2-(3,4-dimethoxypheny 1)-7-[(1 -methylpiperidin-4- yl)oxy]-4H-pyrido[l,2-a]pyrimidin-4-one ND 396.2
27 236 2-(3,4-dimethoxyphenyl)-7-[(3S)-pyrrolidin-3- yloxy] -4H-pyrido [ 1,2-a]pyrimidin-4-one 164-166 368.1
383
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
27* 237 2-(3,4-dimethoxyphenyl)-7-(piperidin-4-yloxy)-4H- pyrido [ 1,2-a]pyrimidin-4-one 221-224 382.2
2 238 7-(1,4-diazepan-1 -yl)-2-(3,4-dimethoxypheny 1)-9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one 160-177 395.5
2* 239 2-(3-fluoro-4-methoxyphenyl)-7-{methyl[(3R)-lmethylpyrrolidin-3-yl] amino} -4H-pyrido[ 1,2a]pyrimidin-4-one 143-149 383.5
14 240 7-[4-(dimethylamino)piperidin-1 -yl]-2-(2-methyll,3-benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4one 206-210 404.5
14 241 7-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-2-(2methy 1-1,3-benzoxazol-6-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 189-193 390.5
14 242 7-(4-aminopiperidin-l-yl)-2-(2-methyl-l,3- benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one ND 376.2
14 243 7 - [(3 aR,6aS)-hexahydropyrrolo [3,4-c]pyrrol-2( 1H)yl] -2-(2-methyl-1,3 -benzoxazo l-6-yl)-4H-pyrido [1,2a]pyrimidin-4-one ND 388.3
14 244 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(2-methyll,3-benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4one 181-187 390.5
34* 245 2-(3,4-dimethoxypheny 1)-7-( 1,2,3,6- tetrahydropyridin-4-yl)-4H-quinolizin-4-one 174-176 363.2
2 246 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aR)-lmethylhexahydropyrrolo [3,4-b]pyrro 1-5(1 H)-yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one 205-209 395.2
2 247 2-(3,4-dimethoxyphenyl)-9-methyl-7-(l ,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 186-191 378.2
23 248 2-(3,4-dimethoxypheny 1)-7-[ 1 -(2-hydroxyethyl)l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 134-137 408.2
35* 249 2-(3,4-dimethoxypheny 1)-7-( 1 -methyl-1,2,3,6tetrahydropyridin-4-yl)-4H-quinolizin-4-one 194-196 377.2
24 250 2-(3,4-dimethoxyphenyl)-9-methyl-7-(piperidin-4- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 176-181 380.3
23 251 2-(3,4-dimethoxypheny l)-9-methy 1-7-( 1 -methyl- 1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 187-196 392.2
384
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
25 252 2-(3,4-dimethoxyphenyl)-9-methyl-7-(l- methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4- one 170-174 394.2
14 253 7-(1,4-diazepan-l -yl)-2-(2-methyl-1,3-benzothiazol- 6-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 205-207 392.2
14 254 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(4-methyl-l,4- diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 158-160 406.1
14 255 7-[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(2-methyl-1,3 -benzothiazo l-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 250-260 (DR) 418.1
14 256 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(4- methylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 230-234 392.1
2 257 2-(3,4-dimethoxyphenyl)-7-[(3aR,6aS)hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-one 215 (S), 246-251 407.3
9 258 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 220-223 404.3
9 259 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3R,5 S)-3,4,5 -trimethylp iperazin-1 -yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one 254-260 418.3
2 260 2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3aR,6aS)-5methylhexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 212-218 421.2
2 261 2-(3,4-dimethoxypheny 1)-7-[4(dimethylamino)piperidin-l-yl]-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 167-171 423.3
22 262 7-[(lR,5S)-8-azabicyclo[3.2.1]oct-2-en-3-yl]-2-(3,4- dimethoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 191-194 390.2
26* 263 2-(3,4-dimethoxypheny 1)-7-( 1,2,5,6- tetrahydropyridin-3 -yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 146-150 364.2
14 264 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(2methy 1-1,3-benzoxazo l-6-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 203-207 390.2
14 265 2-(2-ethyl-1,3-benzoxazo l-6-yl)-7-(piperaz in-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 170-175 376.2
14 266 2-(2-ethyl-l ,3-benzoxazol-6-yl)-7-[(3S)-3- 168-170 390.2
methyip iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one
385
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
14 267 2-(2-methyl-l,3-benzoxazol-6-yl)-7-[(3aR,6aS)-5methylhexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 200-204 402.2
29 268 7-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 308 (D) 379.2
16 269 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (4-methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 283-286 393.3
16 270 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3R)-3-methylpiperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one ND 393.3
16 271 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 270-274 419.3
16 272 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-ylJ4H-pyrido [ 1,2-a]pyrimidin-4-one 277-280 419.2
16 273 7-(4-aminopiperidin-l-yl)-2-(8-fluoro-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one ND 393.3
16 274 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(8- fluoro-2-methylimidazo[ 1,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 300 (D) 407.3
16 275 7-[(3 S)-3-(dimethylamino )pyrro lidin-1 -yl]-2-(8fluoro-2-methylimidazo[ 1,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 294-297 407.3
30* 276 2-(4-aminopiperidin-l-yl)-7-(3-fluoro-4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 268-283 369.3
30 277 2-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-7-(3- fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-onc 167-170 383.2
30 278 2-[(3 S)-3-(dimethylamino )pyrro lidin- l-yl]-7-(3- fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one 167-169 383.2
2 279 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5-(2hydroxyethyl)hexahydropyrrolo[3,4-c]pyrrol-2(lH)yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 180-186 425.3
2 280 2-(3-fluoro-4-methoxyphenyl)-7-[(3aS,6aS)-l- 207-211 395.3
methy lhexahydropyrro Ιο [3,4-b]pyrro 1-5(1 H)-yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one
386
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
2 281 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5(propan-2-yl)hexahydropyrrolo[3,4-c]pyrro 1-2(1 H)yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 189-192 423.3
2 282 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(3- fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one 188-191 383.3
14 283 7-(3,3-dimethylpiperazin-1 -yl)-2-(2-methyl-1,3- benzothiazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 200-202 406.3
14 284 7-[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(2-methyl-1,3 -benzothiazo l-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 254-256 418.2
14 285 7-[4-(dimethylamino)piperidin-1 -yl]-2-(2-methyl- 1,3 -benzothiazo l-6-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one ND 420.2
27 286 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(piperidin-4- yloxy)-4H-pyrido [ 1,2-a]pyrimidin-4-one 218-220 393.1
16 287 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 245-251 395.2
16 288 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3R,5 S)-3,5-dimethylpiperazin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 289-295 423.1
16 289 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (4-methyl-1,4-diazepan-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 239-244 423.2
16 290 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3R)-3-methylpiperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 236-239 409.1
16 291 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3 S)-3 -methylpiperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 236-239 409.1
16 292 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-ylJ- 4H-pyrido [ 1,2-a]pyrimidin-4-one 274-280 435.2
16 293 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 4H-pyrido [ 1,2-a]pyrimidin-4-one 269-275 435.2
46* 294 7-(3-fluoro-4-methoxyphenyl)-2-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 188-192 352.1
387
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
39 295 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(8-fluoro-2- methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 269-275 407.3
39 296 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(8-fluoro-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 279-282 407.3
39 297 7-[4-(dimethylamino)piperidin-l-yl]-2-(8-fluoro-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 250-257 421.3
39 298 2-[4-(dimethylamino)piperidin-l-yl]-7-(3-fluoro-4- methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one 157-160 397.2
37 299 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 177-180 377.2
23 300 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-(lmethyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 178-181 391.3
2 301 2-(3-fluoro-4-methoxyphenyl)-7-[(4aR,7aR)octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 194-201 395.2
37 302 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one ND 359.2
23 303 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(l-methyl- 1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 132-135 373.3
23 304 7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(2methyl-l,3-benzoxazol-6-yl)-4H-pyrido[l,2a]pyrimidin-4-one 128-131 387.3
36 305 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7- (pipcrazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-onc 184-186 380.3
36* 306 2- (4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-[(3S)- 3- methylpiperazin-1-yl]-4H-pyrido [ 1,2-a]pyrimidin- 4- one 207-209 394.3
39 307 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(4-fluoro-2methy 1-1,3-benzoxazol-6-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 194-196 408.3
36 308 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 219-221 394.1
388
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
36 309 7-(4-ethylp iperazin-1 -yl)-2-(4-fluoro-2-methyl-1,3- benzoxazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 212-214 408.2
36 310 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-(4propylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 175-178 422.1
2 311 7-[(3aR,6aS)-5-ethylhexahydropyrrolo[3,4-c]pyrrol- 2(lH)-yl]-2-(3-fluoro-4-methoxyphenyl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 157-167 409.1
22 312 2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-(l ,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 211-215 366.1
2 313 2-(3-fluoro-4-methoxyphenyl)-7-[(4aR,7aR)-lmethyloctahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 223-227 409.1
2 314 2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3R)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 177-184 395.2
23 315 2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-( 1 methyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 184-190 380.1
24 316 7-(3-fluoro-4-methoxyphenyl)-2-(piperidin-4-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 278-281 354.1
25 317 7-(3-fluoro-4-methoxyphenyl)-2-( 1 -methylpiperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 202-205 368.1
23 318 7-( 1-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(4fluoro-2-methyl-l,3-benzoxazol-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 151-154 405.2
23 319 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-(lpropyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 159-162 419.3
25 320 2-(3,4-dimethoxypheny 1)-7-[(1R, 5S)-8-methyl-8azabicyclo[3.2.1]oct-3-yl]-4H-pyrido[l,2a]pyrimidin-4-one ND 406.2
2 321 2-(3,4-dimethoxyphenyl)-7-[(2R)-2-methylpiperazin- 1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one ND 381.1
54* 322 2-(2-methyl-l,3-benzoxazol-6-yl)-7-[(3S)-3- methylpiperazin-1 -yl]-4H-quinolizin-4-one 115-117 375.3
54 323 2-(2-methyl-1,3 -benzoxazo l-6-yl)-7-(4- ND 375.1
methylpiperazin-1 -yl)-4H-quinolizin-4-one
389
2017204248 22 Jun 2017
Name
Ex Cpd
M.P. MS
39 324 7-[(3S)-4-ethyl-3-methylpiperazin-l-yl]-2-(2- methyl-l,3-benzoxazol-6-yl)-4H-quinolizin-4-one 288-290 403.2
39 325 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(2-methyl-l,3- benzoxazol-6-yl)-4H-quinolizin-4-one >300 389.2
45 326 7-(4-aminopiperidin-l-yl)-2-(2-methyl-l,3- benzoxazol-6-yl)-4H-quinolizin-4-one 288-290 375.2
2 327 2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-[(3S)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- 198-202 383.1
one
328
329
7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fluoro-4methoxyphenyl)-9-methyl-4H-pyrido [ 1,2a]pyrimidin-4-one
141-145
411.2
2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-( 1 methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one
382.2
53330
39331
2332
2333
9334
9335
9336
9337
7-[4-(cyclopropylamino)piperidin-l-yl]-2-(3,4dimethoxyphenyl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one 141 (S), 158-161 435.3
2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3 S)-3,4-dimethylpiperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 258-262 423.2
2-(3,4-dimethoxyphenyl)-7-[(3R,5S)-3,5- dimethylpiperazin-1 -yl]-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one 225-233 409.3
2-(3,4-dimethoxyphenyl)-7-[(3R)-3,4- dimethylpiperazin-1 -yl]-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one 148 (S), 168-177 409.3
2-(4,6-dimethylpyrazo lo[l,5-a]pyr az in-2-y 1)-7-(4methyl-1,4-diazepan-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 169-171 404.4
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7- [(3R)-3-methylpiperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one ND 390.4
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 215-218 416.3
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-ylJ4H-pyrido [ 1,2-a]pyrimidin-4-one 228-230 416.4
390
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
9 338 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-(4ethylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4one 251-253 404.4
9 339 7-[4-(dimethylamino)piperidin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 208-210 418.4
9 340 7-(3,3-dimethylpiperaz in-l-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 195-197 404.4
9 341 7-(4-cyclopropylpiperazin-1 -yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 189-192 416.4
38* 342 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 207-210 373.3
39 343 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3R)-4-ethyl-3-methylpiperazin-1 -yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 418.4
2 344 2-(3,4-dimethoxypheny l)-9-methy 1-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 191-198 395.3
2 345 2-(3,4-dimethoxypheny 1)-7-[4(dimethylamino)piperidin-l-yl]-9-ethyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 146-150 437.3
23 346 2-(3,4-dimethoxypheny 1)-7-[ 1 -(2-hydroxyethyl)l,2,3,6-tetrahydropyridin-4-yl]-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 169-179 422.3
14 347 7-[4-(dimethylamino)piperidin-1 -yl]-2-(2-methyll,3-benzothiazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4one 218-220 420.2
45 348 7-(4-aminopipcridin-l-yl)-2-(2-mcthyl-l,3- benzothiazol-5-yl)-4H-pyrido[1,2-a]pyrimidin-4-one 190-192 392.1
45 349 7 - [(3 aR,6aS)-hexahydropyrrolo [3,4-c]pyrrol-2( 1H)yl] -2-(2-methyl-1,3 -benzothiazo 1-5 -yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 404.1
23 350 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 methyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 193-197 387.4
23 351 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 ethyl-1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido [1,2a]pyrimidin-4-one 202-204 401.4
391
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
23 352 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 propyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 191-193 415.5
49* 353 2-(3,4-dimethoxypheny 1)-7-( 1,2,3,6tetrahydropyridin-4-yl)-4H-pyrimido [1,2a]pyrimidin-4-one ND 365.1
23 354 7-(l-cyclopropyl-l,2,3,6-tetrahydropyridin-4-yl)-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 413.4
23 355 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1 (propan-2-yl)-1,2,3,6-tetrahydropyridin-4-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 186-189 415.4
23 356 7-(l-cyclobutyl-l,2,3,6-tetrahydropyridin-4-yl)-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 191-193 427.4
23 357 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1 (oxetan-3-yl)-l,2,3,6-tetrahydropyridin-4-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 429.3
53 358 2-(3,4-dimethoxyphenyl)-9-methyl-7-[4- (methylamino)piperidin-1 -yl]-4H-pyrido [1,2a]pyrimidin-4-one ND 409.3
53 359 2-(3,4-dimethoxypheny 1)-7-[4- (ethylamino)piperidin-1 -yl]-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one ND 423.4
2 360 2-(3,4-dimethoxyphenyl)-8-methyl-7-(piperazin-1 - yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 161-169 381.3
39 361 2-(3,4-dimethoxypheny 1)-7-[4-(propan-2ylamino)piperidin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin4-one ND 423.3
23 362 7-(l-cyclobutyl-l,2,3,6-tetrahydropyridin-4-yl)-2- (3,4-dimcthoxyphcnyl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 152-154 418.3
23 363 2-(3,4-dimethoxypheny 1)-7-[l-(propan-2-yl)-1,2,3,6tetrahydropyridin-4-yl] -4H-pyrido [ 1,2-a]pyrimidin4-one 116-118 406.3
23 364 2-(3,4-dimethoxypheny 1)-7-[l-(oxetan-3-yl)-1,2,3,6tetrahydropyridin-4-yl] -4H-pyrido [ 1,2-a]pyrimidin4-one 178-180 420.3
23 365 2-(3,4-dimethoxypheny 1)-7-(1 -propyl-1,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 158-160 406.2
392
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
366 2-(3,4-dimethoxypheny 1)-7-[4- (methylamino)cyclohex-l-en-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 232-235 392.3
367 2-(3,4-dimethoxypheny 1)-7-[4- (dimethylamino)cyclohex-l-en-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 162-164 406.2
368 2-(3,4-dimethoxyphenyl)-7-{4- [ethyl(methyl)amino]cyclohex-1 -en-1 -yl} -4Hpyrido [ 1,2-a]pyrimidin-4-one 132-134 420.4
369 2-(3,4-dimethoxypheny 1)-7- {4[methyl(propyl)amino]cyclohex-1 -en-1 -yl} -4Hpyrido [ 1,2-a]pyrimidin-4-one 116-118 434.4
370 2-(3,4-dimethoxypheny 1)-7-( 1 -ethyl-1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 170-172 392.3
172-178
364.3
371 7-(3,4-dimethoxyphenyl)-2-(l,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
372 7-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- (l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2- a]pyrimidin-4-one ND 376.2
373 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[4-(propan-2-yl)piperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 260-264 421.3
374 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[4-(propan-2-yl)piperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 287-292 437.4
375 7-(2-methylimidazo[l,2-a]pyridin-6-yl)-2-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 197-201 358.2
376 7-(2-mcthylimidazo[l,2-a]pyridin-6-yl)-2-(l-methyl- 203-207 372.2
1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l ,2a]pyrimidin-4-one
377 7-(3,4-dimethoxyphenyl)-2-(l -methyl-1,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
149-152
378.3
378 2-(3,4-dimethoxyphenyl)-9-methy 1-7-( 1 -propyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one
171-177
420.3
393
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
379 7-(l-cyclobutyl-l,2,3,6-tetrahydropyridin-4-yl)-2- (3,4-dimethoxyphenyl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one 167-178 432.3
380a 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(piperidin-4- yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one NI NI
381 7-(4-aminopiperidin-l-yl)-2-(2-methyl-l,3- benzothiazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 190-194 392.2
382 7-(3-aminopyrrolidin-l-yl)-2-(2-methyl-l,3- benzothiazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 196-200 378.2
383 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(2methyl-l,3-benzothiazol-6-yl)-4H-pyrido[l,2a]pyrimidin-4-one 235-240 406.3
384 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 124-126 375.2
385 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [4-(2-methoxyethyl)piperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 258-262 437.5
386 2-(3,4-dimethoxyphenyl)-9-methyl-7-[l-(oxetan-3yl)-l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 180-195 (DR) 434.3
387 2-(3,4-dimetlioxyp heny l)-9-methy 1-7-[ 1-(propane- yl)-1,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 153-163 420.4
388 2-(3,4-dimethoxyp heny 1)-7-( 1 -ethyl-1,2,3,6tetrahydropyridin-4-yl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one ND 406.4
389 2-(3,4-dimethoxyphenyl)-8-methyl-7-( 1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 175 (D) 378.3
23 390
23 391
23 392
7-(l-cyclopropyl-l,2,3,6-tetrahydropyridin-4-yl)-2(3,4-dimethoxyphenyl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one
2-(3,4-dimethoxyphenyl)-8-methyl-7-( 1 -methyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one
2-(2-methyl-l,3-benzothiazol-6-yl)-7-(l-methyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one
180-189418.4
174-178392.4
170-172389.2
394
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
23 393 7-[l-(2-hydroxyethyl)-l,2,3,6-tetrahydropyridin-4- yl] -2-(2-methyl-1,3 -benzothiazo l-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 178-180 419.2
23 394 2-(2-methyl-l,3-benzothiazol-6-yl)-7-[l-(propan-2yl)-l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 168-170 417.2
23 395 7-(l-cyclopropyl-l,2,3,6-tetrahydropyridin-4-yl)-2- (2-methyl-1,3 -benzothiazo l-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 158-160 415.3
23 396 7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(2methy 1-1,3-benzothiazo l-6-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 128-130 (DR) 403.2
39 397 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 247-249 404.5
56* 398 2-(3,4-dimethoxypheny 1)-7-( 1,2,3,6tetrahydropyridin-4-yl)-4H-pyrimido [1,2b]pyridazin-4-one 195-200 365.3
9 399 7-[(lS,4S)-2,5-diazabicyclo[2.2.1]hept-2-yl]-2-(4,6- dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 218-221 388.3
39 400 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(lS,4S)-5-methyl-2,5-diazabicyclo[2.2.1]hept-2-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 188-191 402.3
39 401 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(lS,4S)-5-ethyl-2,5-diazabicyclo[2.2.1]hept-2-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 175-177 416.4
57* 402 2-(3,4-dimethoxyphenyl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one 205-208 365.4
24 403 2-(3-fluoro-4-mcthoxyphcnyl)-7-(pipcridin-4-yl)- 4H-pyrido[l ,2-a]pyrimidin-4-one 122-125 354.3
25 404 2-(3,4-dimethoxypheny 1)-7-( 1 -ethylpiperidin-4-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 155-157 394.4
24 405 2-(3,4-dimethoxyphenyl)-7-[cis-4- (methylamino)cyc lo hexyl]-4H-pyrido[ 1,2a]pyrimidin-4-one 156-158 394.4
24 406 2-(3,4-dimethoxyphenyl)-7-(piperidin-3-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 126-129 366.3
395
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
53* 407
408
2-(3,4-dimethoxyphenyl)-9-methyl-7-[4(propylamino)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one
2-(3,4-dimethoxyphenyl)-9-ethyl-7-( 1,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
178-184 437.5
171-177 392.4
409 7-(2-methylimidazo[l,2-a]pyridin-6-yl)-2-(piperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 255-258 360.4
410 7-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- (piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 295-298 378.4
411 7-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- (1 -methyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 218-222 390.4
412 7-(4-cyclopropylpiperazin-l-yl)-2-(8-tluoro-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 254-258 419.4
413a 2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7- (1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrazino [ 1,2a]pyrimidin-4-one NI NI
414 2-(3,4-dimethoxyphenyl)-7-[(8aR)hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-one ND 421.4
415 2-(3,4-dimethoxyphenyl)-9-ethyl-7-( 1 -methy 1- 1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 177-182 406.4
416 2-(3,4-dimethoxyphenyl)-9-methy 1-7-[4-(propan-2ylamino)piperidin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin4-one 178-183 437.5
183-189
421.4
417
418
2-(3,4-dimethoxyphenyl)-7-[(8aS)hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-onc
2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l-ethyl-1,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
148-153
420.5
419
2-(3,4-dimethoxyphenyl)-9-methy 1-7-[4-(morpholin4-yl)piperidin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4one
465.5
420 2-(6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one
202-204
362.2
396
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
421 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(l,2,3,6tetrahydropyridin-4-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one hydrochloride (1:1) ND 360.1
422 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(l-methyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrazino[l,2a]pyrimidin-4-one 240-242 374.3
423 7-( 1-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(2methy 1-1,3-benzoxazo l-6-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one 225-227 388.4
424 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(piperidin-4- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 222-224 377.1
425 2-(4,6-dimethylpyr azo lo[l,5-a]pyr azin-2-yl)-7-[4- (pyrro lidin-1 -yl)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 215-218 444.4
426 7-(1,4'-bipiperidin-1 '-y 1)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 236-238 458.4
427 2-(4,6-dimethylpyr azo lo[l,5-a]pyr azin-2-yl)-7-[4-(4methylp iperazin-1 -yl)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 198-200 473.5
428 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[4(morpholin-4-yl)piperidin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 192-195 460.4
429 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-( 1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 206-208 358.4
23 430
23 431
14 432
53 433
25 434
2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-( 1 -methyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 137-140 372.2
7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(2mcthylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 220-223 386.4
7-[4-(dimethylamino)piperidin-1-yl]-2-(2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 204-206 403.4
2-(3,4-dimethoxyphenyl)-7-{4-[(2hydroxyethyl)amino]piperidin-1 -yl} -9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 185-193 439.4
2-(3,4-dimethoxypheny l)-9-ethyl-7-( 1 - methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4- 146 (S), 166-169 408.4
one
397
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
53 435 7-[4-(diethylamino)piperidin-l-yl]-2-(3,4dimethoxyphenyl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one 149-155 451.5
25 436 2-(3,4-dimethoxyphenyl)-9-ethyl-7-(lethylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4one 157-162 422.4
14 437 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-[4- (pyrro lidin-1 -yl)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 230-232 429.4
51 438 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-(piperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 298-300 360.1
25 439 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(l- methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 240-242 391.4
9 440 7-(4-methylpiperaz in-l-yl)-2-(6-methy lp yr azolof 1,5a]pyrazin-2-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 230-240 (DR) 376.2
9 441 7-[(3S)-3-methylpiperazin-l-yl]-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 235-240 (DR) 376.2
9 442 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 258-260 390.3
37* 443 2-(1-methyl-ΙΗ-indazo l-5-yl)-7-(l, 2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 200-203 358.2
37 444 2-[6-(dimethylamino)pyridin-3-yl]-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 255-257 348.4
37 445 7-[4-(diethylamino)piperidin-1 -yl]-2-(2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-onc 208-210 431.4
53 446 2-(3,4-dimethoxyphenyl)-7-{4-[(2hydroxyethyl)(methyl)amino]piperidin-1 -yl} -9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one 164-171 453.5
2 447 2-(3,4-dimethoxyphenyl)-9-ethyl-7-[(3R)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 140-147 409.2
25 448 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-( 1 - methyip iperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 218-220 374.3
398
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
449 2-(l-methyl-lH-indazol-5-yl)-7-(l-methyl-l,2,3,6tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
148-150
372.3
450 2-[6-(dimethylamino)pyridin-3-yl]-7-(l-methyll,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 214-216 362.4
451 7-[4-(diethylamino)piperidin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 232-235 446.5
452 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one ND 375.4
453 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 - methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4- one 220-222 389.3
170-172
403.3
454 2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-7-(lethylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one
455 2-(3,4-dimethoxyphenyl)-9-ethyl-7-[(8aR)hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one 180-184 435.3
456 2-(3,4-dimethoxyphenyl)-7-{4-[(2- methoxyethyl)amino]piperidin-l-yl}-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 178-182 453.3
457 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-(4-methylpiperazin-1 -yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 262-271 404.2
458 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]-9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one 244-256 430.3
459 7-[4-(dimethylamino)piperidin-l-yl]-2-(4,6dimcthy lp yr azolof 1,5-a]pyr az in-2-yl)-9-mcthy 1-4Hpyridofl ,2-a]pyrimidin-4-one 231-241 432.4
460 7-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-2-( 1 - methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 227-230 374.3
215-218
402.3
461 7-(2-methylimidazo[l,2-a]pyridin-6-yl)-2-[l(propan-2-yl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one
462
7-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- 235-238 (1 -methyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one
392.3
399
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
23 463 7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(l- methyl-1 H-indazo l-5-yl)-4H-pyrido[l,2-a]pyrimidin- 4-one 172-174 386.3
23 464 2-( 1 -methyl-1 H-indazol-5-yl)-7-( 1 -propyl-1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 152-154 400.4
24 465 2-[6-(dimethylamino)pyridin-3-yl]-7-(piperidin-4- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 208-210 350.3
9 466 7-(4-ethylpiperazin-l -yl)-2-(6-methylpyrazolo[l ,5- a]pyrazin-2-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 220-230 (DR) 390.3
9 467 7-[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]- 2-(6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 240-250 (DR) 402.3
9 468 7-[4-(dimethylamino)piperidin-l-yl]-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 240-242 404.3
9 469 7-[4-(2-hydroxyethyl)piperazin-l-yl]-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 254-256 406.3
25 470 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-( 1 propyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 159-161 402.4
23 471 7-[l-(2-hydroxyethyl)-l,2,3,6-tetrahydropyridin-4- yl] -2-(1 -methyl-1 H-indazo 1-5 -yl)-4H-pyrido [1,2a]pyrimidin-4-one ND 402.3
9 472 7-[(3R)-3-methylpiperazin-l-yl]-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 240-244 376.2
38 473 2-(6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-onc 260-265 (DR) 359.2
37 474 2-(2-methyl-2H-indazol-5-yl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 239-241 358.4
37 475 2-( 1-methyl-1 H-indazo 1-5-yl)-7-( 1 - methyip iperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 216-218 374.4
25 476 2-(2-methyl-2H-indazol-5-yl)-7-(l-methyl-1,2,3,6- tetrahydropyridin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 226-228 372.3
400
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
23 477 7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(2methyl-2H-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin4-one 198-200 386.4
23 478 7-( l-ethylpiperidin-4-yl)-2-(2-methylimidazo[ 1,2a]pyridin-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 190-192 388.4
23 479 2-( 1,3-dimethylpyrrolo[l ,2-a]pyrazin-7-yl)-7-[ 1 (propan-2-yl)-l,2,3,6-tetrahydropyridin-4-yl]-4Hpyrazino[l ,2-a]pyrimidin-4-one 220-222 415.3
22 480 2-(4,6-dimeth ylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-(l,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one >300 387.4
23 481 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-( 1-methyl-1,2,3,6-tetrahydropyridin-4-yl)4H-pyrido [ 1,2-a]pyrimidin-4-one ND 401.4
23 482 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 ethyl-1,2,3,6-tetrahydropyridin-4-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 415.5
23 483 7-(l-cyclopropyl-l,2,3,6-tetrahydropyridin-4-yl)-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-one ND 427.4
23 484 2-(6-methylpyrazolo [ 1,5 -a]pyrazin-2-yl)-7-( 1 methyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 126-128 (DR) 373.2
23 485 7-( 1-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one ND 387.3
50* 486 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 198-200 376.3
50 487 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 256-258 390.2
50 488 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 202-204 390.3
14 489 2-( 1-methyl-1 H-indazol-5-yl)-7-(4-methylpiperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 194-196 375.3
14 490 2-( 1-methyl-1 H-indazol-5-yl)-7-(piperazin-l -yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 206-208 361.3
14 491 7-[4-(dimethylamino)piperidin-l -yl]-2-( 1 -methyl- lH-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 209-212 403.5
401
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
14 492 7-(4-methyl-1,4-diazepan-1 -yl)-2-( 1 -methyl-1Hindazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one ND 389.4
23 493 7-( 1-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(2methyl-1,3 -benzoxazo l-6-yl)-4H-pyrimido [1,2b]pyridazin-4-one 205-207 388.4
16 494 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (4-ethylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 264-268 423.4
39 495 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3R)-4-ethyl-3-methylpiperazin-1 -yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 239-245 437.5
39 496 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3S)-4-ethyl-3-methylpiperazin-l-yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 234-245 437.5
39 497 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3R)-3-methyl-4-(propan-2-yl)piperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 278-281 451.3
39 498 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3S)-3-methyl-4-(propan-2-yl)piperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 264-270 451.3
58* 499 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(piperidin-4-yl)- 4H-pyrimido[ 1,2-b]pyridazin-4-one 126-128 362.2
25 500 2-(2-methyl-l,3-benzoxazol-6-yl)-7-(l- methylpiperidin-4-yl)-4H-pyrimido [ 1,2-b]pyridazin- 4-one 272-275 376.4
25 501 7-(l-ethylpiperidin-4-yl)-2-(2-methyl-l,3benzoxazol-6-yl)-4H-pyrimido[l,2-b]pyridazin-4one 284-286 390.4
59* 502 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one ND 376.4
25 503 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 methyip iperidin-4-yl)-4H-pyrazino [ 1,2-a]pyrimidin4-one 257-259 390.3
25 504 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 - ethylpiperidin-4-yl)-4H-pyrazino[ 1,2-a]pyrimidin-4- one ND 404.3
57 505 2-(l-methyl-lH-indazol-5-yl)-7-(l,2,3,6tetrahydropyridin-4-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one 228-230 359.2
402
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
23 506 2-( 1 -methyl-1 H-indazol-5-yl)-7-( 1 -methyl-1,2,3,6tetrahydropyridin-4-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one 234-236 373.3
23 507 7-( 1-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(lmethyl-1 H-indazol-5-yl)-4H-pyrazino [ 1,2a]pyrimidin-4-one ND 387.4
2 508 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-(4ethylp iperazin-1 -yl)-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one 241-252 418.5
2 509 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-[(3R)-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 213-222 404.5
2 510 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 244-253 418.4
2 511 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3R)-4-ethyl-3-methylpiperazin-1 -yl]-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 240-245 432.5
60* 512 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one ND 376.4
25 513 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 methyip iperidin-4-yl)-4H-pyrimido[l,2-b]pyridazin4-one 265-267 390.3
25 514 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 ethylpiperidin-4-yl)-4H-pyrimido[l,2-b]pyridazin-4one 283-285 404.4
2 515 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7(octahydro-5H-pyrrolo[3,2-c]pyridin-5-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 198-200 416.3
24 516 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (pipcridin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-onc 287-293 394.2
25 517 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (1 -methyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 292-296 408.3
25 518 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (1 -ethylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 240-246 422.3
25 519 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[ 1 -(propan-2-yl)piperidin-4-yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 279-285 436.5
403
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
520 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-(4-methyl-l,4-diazepan-l-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 418.3
521 2-(2-methyl-2H-indazol-5-yl)-7-(piperidin-4-yl)-4H- pyrimido [ 1,2-b]pyridazin-4-one ND 361.4
522 2-(2-methyl-2H-indazol-5-yl)-7-( 1 -methylpiperidin- 4-yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one 260-262 375.2
523 7-(l-ethylpiperidin-4-yl)-2-(2-methyl-2H-indazol-5- yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one 253-255 389.3
524 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (1 -methylpiperidin-4-yl)-4H-pyrimido[ 1,2b]pyridazin-4-one 289-291 409.3
525 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (1 -ethylpiperidin-4-yl)-4H-pyrimido[ 1,2b]pyridazin-4-one 284-286 423.2
526 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [ 1 -(2-hydroxyethyl)piperidin-4-yl]-4H-pyrimido[ 1,2b]pyridazin-4-one 255-257 439.3
527 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-[(3R,5S)- 3,5 -dimethylpiperazin-1 -yl]-4H-pyrido [1,2a]pyrimidin-4-one 260-262 404.3
528 7-[4-(dimethylamino)piperidin-l-yl]-2-(5,7dimethylfuro[2,3-c]pyridin-2-yl)-4H-pyrido[l,2a]pyrimidin-4-one 200-202 418.3
529 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-[4-(2hydroxyethyl)piperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 256-258 420.3
530 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-y l)-7-[ 1-(2hydroxyethyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 228-230 419.3
531 2-(4,6-dimethylpyr azo lo[l,5-a]pyr azin-2-yl)-7-[4-(2hydroxyethyl)piperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 246-248 420.4
532 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3R)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 238-240 434.3
533 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3 S)-4-(2-methoxyethyl)-3-methylpiperazin-1 -yl] 4H-pyrido [ 1,2-a]pyrimidin-4-one 179-183 467.3
404
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
534
2-(8-chloro-2-methylimidazo[ 1,2-a]pyridin-6-yl)-7- 201 -205 {(3S)-4-[2-(2-hydroxyethoxy)ethyl]-3methylpiperazin-1 -yl} -4H-pyrido [ 1,2-a]pyrimidin-4one
497.3
535 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3S)-4-cyclopropyl-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 253-257 449.3
536 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3S)-4-cyclobutyl-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 228-232 463.3
537 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3S)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 228-234 453.3
538 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [(3 S)-4-(2-methoxyethyl)-3-methylpiperazin-1 -yl] 4H-pyrido [ 1,2-a]pyrimidin-4-one 215-219 451.3
539 2-(8-fluoro-2-methylimidazo [ 1,2-a]pyridin-6-yl)-7 [(3S)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 270-274 437.3
540 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7{(3S)-4-[2-(2-hydroxyethoxy)ethyl]-3methylpiperazin-1 -yl} -4H-pyrido [ 1,2-a]pyrimidin-4one 175-181 481.3
541 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3S)-3-methyl-4-(propan-2-yl)piperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 191-194 435.3
542 7-[(3S)-4-cyclopropyl-3-methylpiperazin-l-yl]-2-(8- fluoro-2-methylimidazo[ 1,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 242-246 433.4
543 7-[(3S)-4-cyclobutyl-3-methylpiperazin-l-yl]-2-(8- fluoro-2-methylimidazo[ 1,2-a]pyridin-6-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 264-267 447.3
544 7-(3,3-dimethylpiperazin-l-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 418.3
545 2-(l-methyl-lH-indazol-5-yl)-7-[(3R)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 190-192 375.3
390.5
546 2-(4-ethyl-6-methylpyrazolo[l ,5-a]pyrazin-2-yl)-7(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one
405
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
9 547 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- (4-methylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 250-252 404.5
9 548 2-(4-ethyl-6-methy lp yr azolof 1,5-ajpyr azin-2-yl)-7- (4-ethylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 250-252 418.5
9 549 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[4-(2-hydroxyethyl)p iperazin-l-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 240-242 434.5
9 550 7-[4-(dimethylamino)piperidin-1-yl]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 258-260 432.5
9 551 7-[4-(diethylamino)piperidin-1 -yl]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 232-235 460.6
14 552 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(l-methyllH-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 240-242 389.5
14 553 2-(l-methyl-lH-indazol-5-yl)-7-[(3S)-3- methylp iperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 206-208 375.4
25 554 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-[ 1 (propan-2-yl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 218-220 402.4
16 555 2-(2-methylimidazo[l,2-a]pyridin-7-yl)-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 272-277 361.3
24 556 2-(2-methylimidazo[l,2-a]pyridin-7-yl)-7-(piperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 257-260 360.3
39 557 2-(2-methylimidazo[l,2-a]pyridin-7-y 1)-7-(4methylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 285-288 375.3
39 558 7-(4-ethylp iperazin-1 -yl)-2-(2-methylimidazo[ 1,2a]pyridin-7-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 219-222 389.3
25 559 2-(2-methylimidazo [ 1,2-a]pyridin-7-yl)-7-( 1 methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 255-260 374.3
25 560 7-( l-ethylpiperidin-4-yl)-2-(2-methylimidazo[ 1,2a]pyridin-7-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 229-233 388.4
2 561 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9- 210-219 404.4
methyl-7-[(3S)-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one
406
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
562 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(4,6dimethy lp yr azolof 1,5-a]pyr az in-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 273-283 418.4
563 7-[(3S)-3,4-dimethylpiperazin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 244-253 418.4
564 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-[(3R,5S)-3,4,5-trimethylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 297-310 432.4
565 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-[ 1 (propan-2-yl)-1,2,3,6-tetrahydropyridin-4-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 230-232 400.5
566 2-(2-methyl-2H-indazol-5-yl)-7-(piperidin-4-yl)-4H- pyrazino [ 1,2-a]pyrimidin-4-one 235-237 361.3
567 2-(2-methyl-2H-indazol-5-yl)-7-( 1 -methylpiperidin- 4-yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one 275-277 375.3
568 7-(l-ethylpiperidin-4-yl)-2-(2-methyl-2H-indazol-5- yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one 198-200 389.3
569 7-[l-(2-hydroxyethyl)piperidin-4-yl]-2-(2-methyl- 2H-indazol-5-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one 230-232 405.3
570 7- {4-[(dimethylamino)methyl]piperidin-1 -yl}-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 206-208 432.3
571 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[4(pyrro lidin-1 -ylmethyl)piperidin-1 -yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 177-180 458.5
572 2-(4,6-dimethylpyrazolo[1,5-a]pyrazin-2-yl)-7-[4(piperidin-1 -ylmethyl)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 192-195 472.6
573 2-(3,4-dimethoxypheny 1)-7- {4- [(dimethylamino)methyl]piperidin-1-yl}-4Hpyrido [ 1,2-a]pyrimidin-4-one 182-184 423.3
574 2-(3,4-dimethoxyphenyl)-7-[4-(pyrrolidin-lylmethyl)piperidin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin4-one 194-196 449.5
575
184-186
463.5
2-(3,4-dimethoxyphenyl)-7-[4-(piperidin-lylmethyl)piperidin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin4-one
576 7-[l-(2-hydroxyethyl)piperidin-4-yl]-2-(2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one
200-202
404.4
407
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
23 577 7-[l-(2-hydroxyethyl)-l,2,3,6-tetrahydropyridin-4yl]-2-(2-methylimidazo[l,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 248-250 402.2
25 578 2-(2-methyl-2H-indazol-5-yl)-7-( 1 -methylpiperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 256-258 374.3
25 579 2-(2-methylimidazo [ 1,2-a]pyridin-6-yl)-7-( 1 - methyip iperidin-4-yl)-4H-pyrazino [ 1,2-a]pyrimidin- 4-one 277-280 375.3
25 580 7-(l-ethylpiperidin-4-yl)-2-(2-methylimidazo[l,2- a]pyridin-6-yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one 255-258 389.3
25 581 7-[l-(2-hydroxyethyl)piperidin-4-yl]-2-(2methylimidazof 1,2-a]pyridin-6-yl)-4H-pyrazino [ 1,2a]pyrimidin-4-one 250-252 405.3
53 582 2-(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-7-{4- [(2-hydroxyethyl)(methyl)amino]piperidin-1 -yl} -9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one 250-259 462.4
53 583 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7- [4-(propylamino)piperidin-1 -yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one 231-241 446.4
2 584 7-(4-amino-4-methylpiperidin-1 -yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 200-203 404.5
58 585 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-(piperidin- 4-yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one ND 361.3
61* 586 2-(2-methyl-2H-indazol-5-yl)-7-(piperazin-l-yl)-4H- pyrazino[l ,2-a]pyrimidin-4-one 160-162 362.3
58 587 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (piperidin-4-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one ND 395.3
58 588 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7- (piperidin-4-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one ND 375.4
39 589 2-(2-methyl-2H-indazol-5-yl)-7-(4-methylpiperazin- 1 -yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one ND 376.4
39 590 7-(4-ethylpiperazin-1 -yl)-2-(2-methyl-2H-indazol-5- y l)-4H-pyrazino [ 1,2-a]pyrimidin-4-one 214-216 390.4
39 591 7-[4-(2-hydroxyethyl)piperazin-1 -yl]-2-(2-methyl- 2H-indazol-5-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one 200-202 406.4
25 592 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(l- 249-251 389.3
methyip iperidin-4-yl)-4H-pyrazino[l,2-a]pyrimidin4-one
408
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
25 593 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(l- ethylpiperidin-4-yl)-4H-pyrazino[ 1,2-a]pyrimidin-4- one 242-244 403.4
25 594 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-[l-(2hydroxyethyl)piperidin-4-yl] -4H-pyrazino [1,2a]pyrimidin-4-one 242-244 419.4
25 595 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [l-(propan-2-yl)piperidin-4-yl]-4H-pyrazino[l,2- a]pyrimidin-4-one 243-245 437.3
53 596 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[4(ethylamino)piperidin-1 -yl]-9-methyl-4H-pyrido [1,2a]pyrimidin-4-one 228-236 432.4
53 597 7- {4-[bis(2-hydroxyethyl)amino]piperidin-1 -yl} -2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-one 218-227 492.4
25 598 7-[l-(2-hydroxyethyl)piperidin-4-yl]-2-(2-methyll,3-benzoxazol-6-yl)-4H-pyrimido[l,2-b]pyridazin4-one 205-207 406.3
25 599 2-(8-chloro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- [ 1 -(2-hydroxyethyl)piperidin-4-yl] -4H-pyrazino [1,2a]pyrimidin-4-one 266-268 439.3
25 600 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1 (oxetan-3-yl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 150-152 431.3
50 601 2-(5,7-dimethylfuro[2,3-c]pyridin-2-yl)-7-(4ethylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4one 202-204 404.3
39 602 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-(lmethyloctahydro-5H-pyrrolo[3,2-c]pyridin-5-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 210-212 430.3
51* 603 2-( 1-methyl-1 H-indazol-5-yl)-7-(pipcridin-4-yl)-4Hpyrido[l ,2-a]pyrimidin-4-one 268-270 360.4
25 604 7-(1 -ethylpiperidin-4-yl)-2-( 1 -methyl-1 H-indazo 1-5 yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 184-186 388.5
25 605 7-[ l-(2-hydroxyethyl)piperidin-4-yl]-2-( 1 -methyl- lH-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 204-206 404.5
24 606 2-(2-methyl-2H-indazol-5-yl)-7-(piperidin-4-yl)-4H- pyrido [ 1,2-a]pyrimidin-4-one 194-196 360.4
24 607 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7- (piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 282-284 374.3
409
Ex Cpd Name M.P. MS
2017204248 22 Jun 2017
25 608 2-(2-methyl-2H-indazol-5-yl)-7-[l-(propan-2- yl)piperidin-4-yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one ND 402.5
53 609 2-(4,6-dimethylpyr azolof l,5-a]pyr az in-2-yl)-7-{4[(2-hydroxyethyl)amino]piperidin-1-yl}-9-methyl4H-pyrido [ 1,2-a]pyrimidin-4-one 221-232 448.4
53 610 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-[4-(methylamino)piperidin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 218-227 418.4
53 611 2-(4,6-dimeth ylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-[4-(propan-2-ylamino)piperidin-1-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 215-225 446.4
25 612 7-(l-ethylpiperidin-4-yl)-2-(2-methyl-2H-indazol-5- yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 202-204 388.5
25 613 7-[l-(2-hydroxyethyl)piperidin-4-yl]-2-(2-methyl- 2H-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 170-172 404.5
25 614 2-(2,8-dimethylimidazo [l,2-a]pyridin-6-yl)-7-(lmethylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 200-202 388.5
25 615 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(lethylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4one 202-204 402.5
25 616 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-[l(propan-2-yl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 242-244 416.5
25 617 2-(2,8-dimethylimidazo [l,2-a]pyridin-6-yl)-7-[ 1-(2hydroxyethyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one ND 418.5
9 618 2-(4-ethy 1-6-methylpyrazolo [1,5-ajpyr az in-2-y 1)-7- (4-propylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin4-one 243-245 432.5
9 619 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[4-(propan-2-yl)piperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one 255-258 432.5
9 620 7-(4-cyclopropylpiperazin-l-yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 258-260 430.5
39 621 7-(4-cyclobutylpiperazin-l-yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2- 275-278 444.5
a]pyrimidin-4-one
410
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
39 622 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [4-(oxetan-3-yl)p iperazin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 205-208 446.5
39 623 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 ethyloctahydro-5H-pyrrolo[3,2-c]pyridin-5-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 176-178 444.5
39 624 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1-(2hydroxyethyl)octahydro-5H-pyrrolo[3,2-c]pyridin-5yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 184-187 460.5
40* 625 2-(4-methoxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)- 7-(4-methylp iperazin-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 242-244 406.5
40* 626
2-(4-hydroxy-6-methylpyrazolo[l,5-a]pyrazin-2-yl)7-(4-methylp iperazin-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one
392.4
627 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-[l(propan-2-yl)piperidin-4-yl]-4H-pyrazino[l,2a]pyrimidin-4-one
403.3
628
7-(l-cyclobutylpiperidin-4-yl)-2-(2- 249-251 methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrazino [ 1,2a]pyrimidin-4-one
415.2
39* 629 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one
257-259
418.5
630
7-[(3R)-4-ethyl-3-methylpiperazin-l-yl]-2-(4-ethyl6-methylpyrazolo [1,5 -a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
432.5
631 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(3R)-3-methyl-4-propylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one
446.5
632 2-(4-cthyl-6-mcthylpyrazolo[l,5-a]pyrazin-2-yl)-7[(3R)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one
448.5
633 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(4-ethyl-6- 258-260 418.4 methyip yr azo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one
634 2-(4-ethyl-6-methylpyrazolo[l ,5-a]pyrazin-2-yl)-7[4-(pyrro lidin-1 -yl)piperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one
229-232
458.6
411
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
635 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 202-204 404.4
636 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- (4-methyl-1,4-diazepan-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 175-180 418.4
637 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 264-271 389.4
638 2-(8-ethyl-2-methylimidazo[1,2-a]pyridin-6-yl)-7- [(3R)-3-methylpiperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 230-234 403.4
639 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 232-236 403.4
640 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1 (propan-2-yl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 196-198 417.5
641 7-(l-cyclopropylpiperidin-4-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 180-183 415.5
642 7-(l-cyclobutylpiperidin-4-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 189-191 429.5
643 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(3R)-3-methyl-4-(propan-2-yl)piperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 242-244 446.5
644 7-[(3R)-4-cyclopropyl-3-methylpiperazin-l-yl]-2-(4ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 244-247 444.5
645 7-[(3R)-4-cyclobutyl-3-methylpiperazin-l-yl]-2-(4cthyl-6-mcthylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido[l ,2-a]pyrimidin-4-one 261-264 458.6
646 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [(3R)-3-methyl-4-(oxetan-3-yl)piperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 216-219 460.5
647 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7-[4- (2-hydroxyethyl)p iperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 248-253 433.3
648 7-(4-cyclobutylpiperazin-l-yl)-2-(8-ethyl-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 274-279 443.5
412
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
39 649 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3R)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 217-220 447.4
39 650 7-[(3R)-4-cyclobutyl-3-methylpiperazin-l-yl]-2-(8ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 209-212 457.4
39 651 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3S)-4-(2-hydroxyethyl)-3-methylpiperazin-l-ylJ4H-pyrido [ 1,2-a]pyrimidin-4-one 220-223 447.4
39 652 7-[(3S)-4-cyclobutyl-3-methylpiperazin-l-yl]-2-(8- ethyl-2-methylimidazo [ 1,2-a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 457.5
59 653 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one ND 390.4
25 654 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7(1 -methyip iperidin-4-yl)-4H-pyrazino [ 1,2a]pyrimidin-4-one 261-263 404.5
25 655 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7- (1 -ethylpiperidin-4-yl)-4H-pyrazino [ 1,2-a]pyrimidin- 4-one 273-275 418.3
24 656 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 236-238 389.4
25 657 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7- (1 -methyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 190-192 403.5
25 658 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7- (1 -ethylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 194-196 417.5
25 659 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[ 1 -(2-hydroxyethyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-onc 207-209 433.5
25 660 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7- (1 -propyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin- 4-one 203-204 431.5
9 661 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [(3R)-3-methylpiperazin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 185-188 404.5
43* 662 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1-(2fluoroethyl)piperidin-4-yl] -4H-pyrido [1,2a]pyrimidin-4-one 197-199 421.5
413
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
43 663 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[ 1-(3fluoropropyl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one 186-188 435.5
43 664 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [4-(2-fluoroethyl)piperazin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 245-247 436.5
43 665 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [4-(3 -fluoropropyl)piperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one 240-242 450.6
43 666 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(3R)-4-(2-fluoroethyl)-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 255-257 450.6
667
43668
43669
43670
24671
25672
39673
48*674
16675
2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [(3R)-4-(3-fluoropropyl)-3-methylpiperazin-l-yl]- 4H-pyrido [ 1,2-a]pyrimidin-4-one 244-246 464.6
2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[ 1 -(2-fluoroethyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 206-208 435.6
2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[ 1 -(3-fluoropropyl)piperidin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 216-218 449.6
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7{(3R)-4-[2-(2-hydroxyethoxy)ethyl]-3methylpiperazin-1 -yl} -9-methyl-4H-pyrido [1,2a]pyrimidin-4-one ND 492.4
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-(piperidin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 247-255 389.3
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-( 1 -methylpiperidin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 237-248 403.4
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3R)-4-(2-hydroxyethyl)-3-methylpiperazin-l-yl]-9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one 273-281 448.4
2-[8-(hydroxymethyl)-2-methylimidazo[l,2a]pyridin-6-yl]-7-(piperazin-l-yl)-4H-pyrido[l,2a]pyrimidin-4-one >320 391.3
7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(8-ethyl-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one ND 417.4
414
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
676 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7-(4methyl-1,4-diazepan-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one ND 417.3
677 2-[8-(hydroxymethyl)-2-methylimidazo[l,2a]pyridin-6-yl]-7-(4-methylpiperazin-l-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 262-266 405.3
678 7-(4-ethylpiperazin-1 -yl)-2-[8-(hydroxymethyl)-2methylimidazo [ 1,2-a]pyridin-6-yl] -4H-pyrido [1,2a]pyrimidin-4-one 258-262 419.3
679 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[ 1 -(propan-2-yl)piperidin-4-yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 228-230 431.5
680 7-(l-cyclopropylpiperidin-4-yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 196-199 429.5
681 7-(l-cyclobutylpiperidin-4-yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 227-229 443.5
682 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [l-(oxetan-3-yl)piperidin-4-yl]-4H-pyrido[l,2- a]pyrimidin-4-one 190-192 445.5
683 2-(4-cyclopropyl-6-methylpyrazolo[l,5-a]pyrazin-2- yl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 226-229 402.4
684 2-(4-cyclopropyl-6-methylpyrazolo[l,5-a]pyrazin-2yl)-7-(4-methylpiperazin-1 -yl)-4H-pyrido [1,2a]pyrimidin-4-one 238-240 416.5
685 2-(4-cyclopropyl-6-methylpyrazolo[l,5-a]pyrazin-2yl)-7-(4-ethylpiperazin-1 -yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 236-238 430.5
686 2-(4-cyclopropyl-6-mcthylpyrazolo[l,5-a]pyrazin-2- yl)-7-[4-(2-hydroxyethyl)piperazin-l-yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 239-241 446.5
687 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 propyip iperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 185-187 417.4
245-248
405.4
41* 688 2-[4-(dimethylamino)-6-methylpyrazolo[l,5a]pyrazin-2-yl]-7-(piperazin-1 -yl)-4H-pyrido [ 1,2a]pyrimidin-4-one
415
Ex Cpd
Name
2017204248 22 Jun 2017
42*
62*
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
2-(2-methyl-1 H-benzimidazol-6-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one
7-(4-ethylpiperazin-1 -yl)-2-(2-methyl-lHbenzimidazol-6-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7(piperidin-4-yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one 2-(2-methylimidazo[l,2-a]pyridin-6-yl)-7-(piperidin4-yl)-4H-pyrimido[ 1,2-b]pyridazin-4-one 7-[l-(2,2-dimethyl-l,3-dioxan-5-yl)piperidin-4-yl]2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
7-[l-(l,3-dihydroxypropan-2-yl)piperidin-4-yl]-2-(4ethyl-6-methylpyr azolof l,5-a]pyr az in-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(l,3dimethylpyrrolo[ 1,2-a]pyrazin-7-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one
2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7(piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7-(lmethylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one
2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7-(lethylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one
2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7-[l(2-hydroxyethyl)piperidin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one
7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(8-ethyl-2methylimidazo[ 1,2-a]pyridin-6-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one
2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(3R)-4-ethyl-3-methylpiperazin-1 -yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-( 1 ethylpiperidin-4-yl)-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one
2-(4,6-dimethylpyrazo lo[1,5-a]pyrazin-2-yl)-7-[l-(2hydroxyethyl)piperidin-4-yl]-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one
M.P.
292-294
283-285
215-217
249-251
236-238
228-230
254-256
221-224
214-218
196-200
244-247
217-220
179-182
231-240
224-233
MS
375.3
389.3
375.4
361.3
503.5
463.6
403.4
388.3
402.4
416.5
432.4
417.4
431.4
417.4
433.3
416
Ex Cpd
Name
M.P. MS
2017204248 22 Jun 2017
704
705
7-(l-cyclobutylpiperidin-4-yl)-2-(4,6dimethy lp yr azolof 1,5-a]pyr az in-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one
9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-(lmethylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one
228-237
222-227
443.5
388.3
706 7-[4-(dimethylamino)-4-methylpiperidin-1 -yl]-2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 237-239 432.4
707 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[4- (ethylamino)-4-methylpiperidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 187-189 432.4
708 2-(4,6-dimethylpyr azo lo[l,5-a]pyrazin-2-yl)-7-[4methyl-4-(propylamino)piperidin-1 -yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 181-183 446.4
709 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-{4[(2-hydroxyethyl)amino] -4-methylpiperidin- 1-yl} 4H-pyrido [ 1,2-a]pyrimidin-4-one 196-198 448.4
710 7-(l-cyclobutylpiperidin-4-yl)-9-methyl-2-(2methyl-2H-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin4-one 232-235 428.4
711
418.4
7-[l-(2-hydroxyethyl)piperidin-4-yl]-9-methyl-2-(2- 216-222 methyl-2H-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin4-one
712
713
2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methy 1-7-( 1 -propyip iperidin-4-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one
431.4
47* 714
715
2- (l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7-[(3R)-
3- methylpiperazin-1-yl]-4H-pyrido [ 1,2-a]pyrimidin-
4- one
2-(8-cyclopropyl-2-mcthylimidazo[l,2-a]pyridin-6yl)-7-(piperazin-l -yl)-4H-pyrido[l ,2-a]pyrimidin-4one
2-(8-cyclopropyl-2-methylimidazo[l,2-a]pyridin-6yl)-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one
716 2-(8-cyclopropyl-2-methylimidazo[l,2-a]pyridin-6yl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one
ND 389.3
274-277
246-250
401.4
415.4
415.4
417
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
47 717 2-(8-cyclopropyl-2-methylimidazo[l,2-a]pyridin-6- yl)-7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 205-209 429.5
25 718 7-(l-cyclopropylpiperidin-4-yl)-9-methyl-2-(2methyl-2H-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin4-one 226-231 414.4
25 719 7-(l-ethylpiperidin-4-yl)-9-methyl-2-(2-methyl-2H- indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 237-241 402.5
2 720 2-(4,6-dimeth ylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9methyl-7-(p iperazin-1 -yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 254-264 390.4
24 721 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-(piperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 211 (S), 223-227 374.3
27 722 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[( 1 methyip iperidin-4-yl)oxy] -4H-pyrido [ 1,2a]pyrimidin-4-one 249-252 405.4
9 723 2-(6-methyl-4-propylpyr azolof l,5-a]pyrazin-2-yl)-7- (p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 250-252 404.4
9 724 7-(4-methylpiperazin-l-yl)-2-(6-methyl-4propylpyrazolo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 246-248 418.4
9 725 7-(4-ethylpiperazin-1 -yl)-2-(6-methyl-4propylpyrazolo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 231-233 432.5
9 726 7-[4-(2-hydroxyethyl)piperazin-1 -yl]-2-(6-methyl-4propylpyrazolo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 225-227 448.4
9 727 7-[(3R)-3-methylpiperazin-l-yl]-2-(6-methyl-4propylpyrazolo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 195-197 418.4
9 728 7-[(3S)-3-methylpiperazin-l-yl]-2-(6-methyl-4propylpyrazolo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [ 1,2a]pyrimidin-4-one 195-197 418.4
9 729 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(6-methyl- 4-propylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 249-251 432.5
39 730 2- (l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7-[(3R)- 3- methyl-4-(propan-2-yl)piperazin-l-yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 249-251 431.3
418
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
63* 731 7-(4-amino-4-methylpiperidin-1 -yl)-2-( 1,3dimethylpyrrolo[ 1,2-a]pyrazin-7-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 244-246 403.3
2 732 2- (4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7-[(3 S)- 3- ethylpiperazin-1 -yl]-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one 243-251 418.5
16 733 2-[2-methyl-8-(trifluoromethyl)imidazo[l,2- a]pyridin-6-yl]-7-(piperazin-l-yl)-4H-pyrido[l,2- a]pyrimidin-4-one 325-328 429.3
16 734 7-[(3R)-3-methylpiperazin-l-yl]-2-[2-methyl-8(trifluoromethyl)imidazo[l,2-a]pyridin-6-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 303-306 443.2
16 735 7-[(3S)-3-methylpiperazin-l-yl]-2-[2-methyl-8- (trifluoromethyl)imidazo[l,2-a]pyridin-6-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one >320 443.2
16 736 7- [(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-[2-methyl- 8- (trifluoromethyl)imidazo[l,2-a]pyridin-6-yl]-4H- pyrido [ 1,2-a]pyrimidin-4-one 293-296 457.3
2 737 7-(4-amino-4-methylpiperidin-1 -yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 216-218 418.5
14 738 2-(2,7-dimethyl-2H-indazol-5-yl)-7-(piperaz in-l-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 194-196 375.4
24 739 2-(2,7-dimethyl-2H-indazol-5-yl)-7-(piperidin-4-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 228-230 374.4
52 740 7-(3-aminoprop-l-yn-l-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 242-244 345.4
14 741 2-(2,7-dimethyl-2H-indazol-5-yl)-7-[(3R)-3- methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4- one 170-172 389.4
52 742 7-(3-aminopropyl)-2-(4,6-dimethylpyrazolo[l,5- a]pyrazin-2-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND 349.3
64* 743 2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 189-191 372.3
38 744 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7(2,2,6,6-tetramethyl-1,2,3,6-tetrahydropyridin-4-yl)4H-pyrido [ 1,2-a]pyrimidin-4-one 218-221 429.5
419
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
38 745 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7(2,2,6,6-tetramethyl-1,2,3,6-tetrahydropyridin-4-yl)4H-pyrido [ 1,2-a]pyrimidin-4-one 255-258 443.5
45 746 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(3 aR,6aS)-hexahydropyrrolo [3,4-c]pyrro 1-2( 1H)yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 239-242 402.4
2 747 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [(3 aR,6aS)-hexahydropyrrolo [3,4-c]pyrro 1-2( 1H)- yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 246-249 416.4
62 748 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(l-ethyl-3methylpyrrolo[l,2-a]pyrazin-7-yl)-4H-pyrido[l,2a]pyrimidin-4-one 238-241 417.4
62 749 7-(1,4-diazepan-l -yl)-2-( 1 -ethyl-3methylpyrrolo[l,2-a]pyrazin-7-yl)-4H-pyrido[l,2a]pyrimidin-4-one 200-202 403.4
14 750 2-(2,7-dimethyl-2H-indazol-5-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 308-310 389.4
39 751 2-(2,7-dimethyl-2H-indazol-5-yl)-7-[(3S)-3,4dimethylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin4-one 202-204 403.4
25 752 2-(2,7-dimethyl-2H-indazol-5-yl)-7-(l- methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 208-210 388.3
25 753 2-(2,7-dimethyl-2H-indazol-5-yl)-7-(l- ethylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4- one 162-164 402.4
2 754 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-(piperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 233-243 375.3
2 755 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-[(3R)-3mcthylpipcrazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one ND 389.4
2 756 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one ND 389.3
2 757 7-[3-(dimethylamino)azetidin-l-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 226-228 390.4
2 758 7-[3-(diethylamino)azetidin-l-yl]-2-(4,6- 231-233 418.5
dimethy lp yr azolof 1,5-a]pyr az in-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
420
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
2 759 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[3- (pyrro lidin-1 -yl)azetidin-1 -yl]-4H-pyrido [ 1,2a]pyrimidin-4-one 235-237 416.4
9 760 7-(1,4-diazepan-1 -yl)-2-(4-ethyl-6- methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one 212-214 404.4
45 761 7 - [(3 aR,6aS)-hexahydropyrrolo [3,4-c]pyrrol-2( 1H)- yl] -2-(6-methyl-4-propylpyrazo lo [ 1,5-a]pyrazin-2yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 212-214 430.4
38 762 2-(6-methyl-4-propylpyrazolo[l,5-a]pyrazin-2-yl)-7(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 257-260 401.4
38 763 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 287-289 387.4
45* 764 7-[(3S)-3-(amino methyl)pyrro lidin-1 -yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 244-246 390.4
2 765 2-(4,6-dimethylpyr azo lo[l,5-a]pyr az in-2-yl)-7-[3(piperidin-1 -yl)azetidin-1 -yl]-4H-pyrido[ 1,2a]pyrimidin-4-one 220-223 430.5
24 766 2-(6-methyl-4-propylpyrazolo[l,5-a]pyrazin-2-yl)-7- (piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 228-230 403.4
2 767 7-(2,7-diazaspiro[4.4]non-2-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 208-210 416.4
14 768 2-(2,7-dimethyl-2H-indazo l-5-yl)-7-(4- methylp iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one 216-218 389.5
52* 769 7-[3-(dimethylamino)propyl]-2-(4,6dimcthylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido[l ,2-a]pyrimidin-4-one 136-138 377.3
39 770 7- {(3S)-3-[(dimethylamino)methyl]pyrro lidin-1 -yl} - 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 239-241 418.4
24 771 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-9methyl-7-(piperidin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one 241-249 403.4
24 772 9-methyl-2-( 1 -methyl- lH-indazol-5-yl)-7-(p iperidin- 4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one 212-217 374.3
421
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
22 773 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-9methyl-7-(l,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 265 (D) 401.3
25 774 2-(4-ethyl-6-methylpyr azolof l,5-a]pyr az in-2-yl)-9methy 1-7-( 1 -methyip iperidin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one 220-227 417.3
51 775 2-(l,7-dimethyl-lH-indazol-5-yl)-7-(piperidin-4-yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 220-222 374.2
14 776 2-(1,7-dimethyl-l H-indazol-5-yl)-7-(piperazin-l -yl)- 4H-pyrido [ 1,2-a]pyrimidin-4-one 160-163 375.3
14 777 2-(1,7-dimethyl-lH-indazol-5-yl)-7-[(3S)-3methylpiperazin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one 248-250 389.3
39 778 7- {(3S)-3-[(diethylamino)methyl]pyrro lidin-1 -yl} -2(4,6-dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 194-196 446.4
39 779 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7{(3S)-3-[(ethylamino)methyl]pyrro lidin-l-yl}-4Hpyrido [ 1,2-a]pyrimidin-4-one ND 418.4
2 780 7- {3-[(dimethylamino)methyl]azetidin-1 -yl} -2-(4,6dimethy lp yr azolof 1,5-a]pyr az in-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 228-230 404.4
2 781 7- {3-[(diethylamino)methyl]azetidin-1 -yl} -2-(4,6dimethy lp yr azolof 1,5-a]pyr az in-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 205-207 432.4
62 782 2-(l-ethyl-3-methylpyrrolo[l,2-a]pyrazin-7-yl)-7f(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 220-222 429.3
2 783 2-(4-ethyl-6-methylpyr azolof l,5-a]pyr az in-2-yl)-9methyl-7-[(3R)-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-onc 223-233 418.4
25 784 9-methyl-2-( 1 -methyl-1 H-indazol-5-yl)-7-( 1 - methylpiperidin-4-yl)-4H-pyrido[ 1,2-a]pyrimidin-4one 255-263 388.3
39 785 7-[(3R)-3,4-dimethylpiperazin-l-yl]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 234-240 432.4
25 786 7-(1 -ethylpiperidin-4-yl)-9-methyl-2-( 1 -methyl-1Hindazol-5-yl)-4H-pyrido[l,2-a]pyrimidin-4-one 236-240 402.4
422
2017204248 22 Jun 2017
Ex Cpd Name M.P. MS
2 787 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-9methyl-7-[(3S)-3-methylpiperazin-l-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one 227-236 418.4
2 788 7-[ l-(2-hydroxyethyl)piperidin-4-yl]-9-methyl-2-( 1 methyl-lH-indazol-5-yl)-4H-pyrido[l,2-a]pyrimidin4-one 225-228 418.4
2 789 7-[(3 S)-3,4-dimethylp iperazin-1-yl]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 235-241 432.4
25 790 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7(1 -ethylpiperidin-4-yl)-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one 201-208 431.4
22 791 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-(l,2,3,6- tetrahydropyridin-4-yl)-4H-pyrazino[ 1,2a]pyrimidin-4-one >240 (D) 373.3
25 792 7-(l-cyclobutylpiperidin-4-yl)-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 231-237 457.3
25 793 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7- [ 1 -(2-hydroxyethyl)piperidin-4-yl]-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one 210-216 447.4
16 794 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 231-235 429.3
16 795 2-(8-ethyl-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one 229-233 429.3
51 796 9-methyl-2-(2-methyl-2H-indazol-5-yl)-7-(piperidin- 4-yl)-4H-pyrazino [ 1,2-a]pyrimidin-4-one 229-235 375.3
2 797 7-[(3R)-3-(amino methyl)pyrro lidin- l-yl]-2-(4,6dimcthylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido[l ,2-a]pyrimidin-4-one 214-217 390.4
44* 798 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-7[(2S,6S)-2,6-dimethyl-1,2,3,6-tetrahydropyridin-4yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one 228-231 401.3
2 799 7- {(3R)-3-[(dimethylamino)methyl]pyrro lidin-1 -yl} - 2-(4,6-dimethylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 229-231 418.4
24 800 7-[(2S,6S)-2,6-dimethylpiperidin-4-yl]-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one 248-250 403.3
423
2017204248 22 Jun 2017
Ex Cpd Name M.P.
16 801 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[4-(2-hydroxyethyl)piperaz in-l-yl]-4H-p yrido [1,2a]pyrimidin-4-one ND
16 802 2-(imidazo[l,2-a]pyridin-6-yl)-7-(4-methylpiperazin- 1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one ND
36 803 2-(4-fluoro-2-methyl-l,3-benzoxazol-6-yl)-7-[(8aS)hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one ND
65* 804 7-(2,7-diazaspiro[3.5]non-7-yl)-2-(4,6dimethylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND
14 805 7-(4-methylpiperazin-1 -yl)-2-(2- methyl[ 1,2,4] triazo lo [ 1,5 -a]pyridin-6-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND
16 806 7-(4-methylpiperazin-l-yl)-2-[2-methyl-8(trifluoromethyl)imidazo[l,2-a]pyridin-6-yl]-4Hpyrido [ 1,2-a]pyrimidin-4-one ND
16 807 2-methyl-6-[7-(4-methylpiperazin-l-yl)-4-oxo-4Hpyrido [ 1,2-a]pyrimidin-2-yl] imidazo [ 1,2-a]pyridine8-carbonitrile ND
16 808 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(4methylpiperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4one ND
16 809 7-(4,7-diazaspiro[2.5]oct-7-yl)-2-(2,8dimethylimidazo [ 1,2-a]pyridin-6-yl)-4H-p yrido [1,2a]pyrimidin-4-one ND
25 810 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (1-methyip iperidin-4-yl)-4H-p yrido [l,2-a]pyrimidin- 4-one ND
66* 811 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7- (4-hydroxypipcridin-4-yl)-4H-p yrido [ 1,2a]pyrimidin-4-one ND
9 812 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-p yrido [ 1,2-a]pyrimidin-4-one ND
9 813 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]4H-p yrido [ 1,2-a]pyrimidin-4-one ND
9 814 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(4ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one ND
MS
423.5
361.5
420.6
416.2
376.1
443.6
400.6
389.5
401.4
392.4
394.4
430.7
430.6
418.7
424
2017204248 22 Jun 2017
Ex Cpd
Name
M.P.
815 7-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-2-(4ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
816 2-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-7[(8aS)-8a-methylhexahydropyrrolo[ 1,2-a]pyrazin2(1 H)-yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one
817 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7(4-ethylpiperazin-1 -yl)-9-methyl-4H-pyrido [ 1,2a]pyrimidin-4-one
818 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]-9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one
819 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(4ethylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4one
ND
ND
ND
ND
ND
16 820 2-(2,8-dimethylimidazo[ l,2-a]pyridin-6-yl)-7-[(8aS)hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -4Hpyrido [ 1,2-a]pyrimidin-4-one
16 821 2-(2,8-dimethylimidazo[l,2-a]pyridin-6-yl)-7-(8amethylhexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl)4H-pyrido [ 1,2-a]pyrimidin-4-one
9 822 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(4ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-9methyl-4H-pyrido [ 1,2-a]pyrimidin-4-one
9 823 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7{[2-(morpholin-4-yl)ethyl] amino} -4H-pyrido[ 1,2a]pyrimidin-4-one
9 824 7- {[2-(dimethylamino)ethyl]amino} -2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one
9 825 7-{[2-(dimcthylamino)cthyl](mcthyl)amino}-2-(4ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-4Hpyrido [ 1,2-a]pyrimidin-4-one
9 826 2-(4-ethyl-6-methylpyrazolo [1,5-a]pyrazin-2-y 1)-7- {methyl[2-(methylamino)ethyl] amino} -4Hpyrido [ 1,2-a]pyrimidin-4-one
16 827 7-[(3R)-3-(dimethylamino)pyrrolidin-l-yl]-2-(2,8dimethylimidazo [ 1,2-a]pyridin-6-yl)-4H-pyrido [1,2-
a]pyrimidin-4-one
ND
ND
ND
ND
ND
ND
ND
ND
MS
418.7
433.6
432.6
444.6
403.7
415.7
429.7
432.6
434.6
392.6
406.6
392.6
403.7
425
2017204248 22 Jun 2017
Ex Cpd
Name
828 7-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-2-(2,8dimethylimidazo [ 1,2-a]pyridin-6-yl)-4H-pyrido [1,2a]pyrimidin-4-one
829 7-[2-(dimethylamino)ethoxy]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-9-methyl-4Hpyrido [ 1,2-a]pyrimidin-4-one
830 7-[2-(dimethylamino)ethoxy]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one
831 2-(4-ethyl-6-methy lpyrazolo[ 1,5-a]pyrazin-2-y 1)-7(piperidin-4-ylmethoxy)-4H-pyrido[l,2-a]pyrimidin4-one
832 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[2-(piperidin-1 -yl)ethoxy] -4H-pyrido [1,2a]pyrimidin-4-one
833 2-(4-ethyl-6-methylpyrazolo[l,5-a]pyrazin-2-yl)-7[3-(morpholin-4-yl)propoxy]-4H-pyrido[l,2a]pyrimidin-4-one
834 7-[3-(dimethylamino)propoxy]-2-(4-ethyl-6methylpyrazo lo [ 1,5 -a]pyrazin-2-yl)-4H-pyrido [1,2a]pyrimidin-4-one
835 2-(4,6-dimethylpyrazo lo[l,5-a]pyrazin-2-yl)-7[(3aR,6aS)-5-methylhexahydropyrrolo[3,4-c]pyrrol2(1 H)-yl]-4H-pyrido [ 1,2-a]pyrimidin-4-one
M.P. MS
ND 403.7
ND 407.6
ND 393.6
ND 419.5
ND 433.6
ND 449.6
ND 407.6
ND 416.5 [001575] or a salt, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
[001576] Table 2 further provides certain isolated compounds of a salt form of a compound of Formula (I) that may be prepared according to the procedures of the indicated Example by using the appropriate reactants, reagents and reaction conditions. The preparation of any free base, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer from a salt form of a compound of Formula (I) is also contemplated and further included within the scope of the description herein. Where a free base form of the compound was not isolated from the salt form, a person of ordinary skill in the art could be expected to perform the required reactions to prepare and isolate the free base form of the compound.
[001577] The term “Cpd” represents Compound number, the term “Ex” represents “Example Number” (wherein * indicates that the corresponding Example for the Compound is provided
426
2017204248 22 Jun 2017 above), the term “M.P.” represents “Melting Point (°C),” the term “MS” represents “Mass Spectroscopy Peak(s) m/z [M+H]+, [M+2+H]+, [M-H]‘ or [M+2-H]',” the term “D” represents “Decomposition/Decomposed,” the term “DR” represents “Decomposition Range,” the term “S” represents “Softens” and the term “ND” indicates that the value was “Not Determined.” [001578] Table 2
Ex Cpd Name M.P. MS
1 71 2-(3,5-difluoro-4-hydroxyphenyl)-7-(piperazin-l-yl)-4H- pyrido[ 1,2-a]pyrimidin-4-one hydrochloride 290 (D) 359.2
33 203 7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fhioro-4- methoxyphenyl)-4H-quinolizin-4-one acetate 188-192 396.2
55* 380 2-(2-methyl-l,3-benzothiazol-6-yl)-7-(piperidin-4-yl)-4H- pyrimido[l,2-b]pyridazin-4-one trifluoroacetate (1:1) 230-235 378.2
57 413 2-(l,3-dimethylpyrrolo[l,2-a]pyrazin-7-yl)-7-(l,2,3,6- >300 373.3
tetrahydropyridin-4-yl)-4H-pyrazino [ 1,2-a]pyrimidin-4one hydrochloride (1:2) [001579] or a free base, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
BIOLOGICAL EXAMPLES [001580] To describe in more detail and assist in understanding the present description, the following non-limiting biological examples are offered to more fully illustrate the scope of the description and are not to be construed as specifically limiting the scope thereof. Such variations of the present description that may be now known or later developed, which would be within the purview of one skilled in the art to ascertain, are considered to fall within the scope of the present description and as hereinafter claimed. These examples illustrate the testing of certain compounds described herein in vitro and/or in vivo and demonstrate the usefulness of the compounds for treating of SMA by enhancing the inclusion of exon 7 of SMN2 into mRNA transcribed from the SMN2 gene. Compounds ofFormula (I) enhance inclusion of exon 7 of SMN2 into mRNA transcribed from the SMN2 gene and increase levels of Smn protein produced from the SMN2 gene, and thus can be used to treat SMA in a human subject in need thereof.
427
2017204248 22 Jun 2017 [001581] Example 1 [001582] SMN2 Minigene Construct [001583] Preparation of the Minigene Constructs [001584] DNA corresponding to a region of the SMN2 gene starting from the 5’ end of exon 6 (ATAATTCCCCC) (SEQ ID NO. 14) and ending at nucleic acid residue 23 of exon 8 (CAGCAC) (SEQ ID NO. 15) was amplified by PCR using the following primers:
[001585] Forward primer: 5’-CGCGGATCCATAATTCCCCCACCACCTC-3’ (SEQ ID NO.
16) [001586] Reverse primer: 5’-CGCGGATCCGTGCTGCTCTATGCCAGCA-3’ (SEQ ID NO.
17) [001587] The 5’ end of each primer was designed to add a BamHl restriction endonuclease recognition site at both the 5’ end of exon 6 (GGATCC) (SEQ ID NO. 18) and the 3’ end after the 23rd nucleotide of exon 8. Using the BamHl restriction endonuclease recognition sites, the PCR fragment was cloned into a derivative of the original pcDNA 3.1/Hygro vector which was modified as disclosed in United States Patent Publication US2005/0048549.
[001588] New UTRs were added to the modified vector using the Hindlll site and the BamHl restriction sites comprising a 5 'DEG UTR: 5’-TAGCTTCTTACCCGTACTCCACCGTTGGCAGCACGATCGCACGTCCCACGTGAAC CATTGGTAAACCCTG-3’ (SEQ ID NO. 19) cloned into the modified pcDNA3.1/Hygro vector together with a start codon upstream of the BamHl restriction site, and;
[001589] a 3 DEG UTR: 5’-ATCGAAAGTACAGGACTAGCCTTCCTAGCAACCGCGGGCTGGGAGTCTGAGACAT CACTCAAGATATATGCTCGGTAACGTATGCTCTAGCCATCTAACTATTCCCTATGTCT TATAGGG-3’ (SEQ ID NO. 20) cloned into the modified pcDNA3.1/Hygro vector using the Not! restriction endonuclease recognition site and the XhoT restriction endonuclease recognition site with a stop codon immediately downstream of the Notl restriction site. In addition, a firefly luciferase gene lacking the start codon was cloned into the vector using the BamHl and Notl restriction sites.
[001590] The resulting minigene comprises, in 5’ to 3’ order: the 5’-DEG UTR, the start codon, six additional nucleotides forming a BamHl restriction site, the nucleic acid residues of exon 6, the nucleic acid residues of intron 6 of SMN2, the nucleic acid residues of exon 7 of
428
2017204248 22 Jun 2017
SMN2, the nucleic acid residues of intron 7 of SMN2, and the first 23 nucleic acid residues of exon 8 of SMN2, an additional six nucleotides forming a BamHl restriction site and the firefly luciferase gene lacking the start codon.
[001591] A single adenine residue was inserted after nucleotide 48 of exon 7 of SMN2 by site-directed mutagenesis. This minigene construct is referred to as SMN2-A.
[001592] SMN2 transcripts derived from minigenes containing exon 6 through 8 and the intervening introns recapitulate the splicing of their endogenous pre-mRNA (Lorson et al, Proc. Natl. Acad. Sci. U.S.A., 1999, 96 (11), 6307). An SMN2-alternative splicing reporter construct which contains exons 6 through 8 and the intervening introns followed by a luciferase reporter gene was generated. Salient features of this construct are the lack of the start codon in the luciferase gene, inactivation of the termination codon (in the open reading frame that encodes the SMN protein) of exon 7 by insertion of a nucleotide after nucleic acid 48 of exon 7 and addition of a start codon (ATG) immediately upstream of exon 6. A single adenine (SMN2-A) was inserted after nucleic residue 48 of exon 7.
[001593] The SMN2 minigene was designed such that the luciferase reporter is in frame with the ATG start codon immediately upstream of exon 6 when exon 7 is present in the mRNA and the luciferase reporter is out of frame with the ATG start codon immediately upstream of exon 6 if exon 7 of SMN2 is removed during splicing of the pre-mRNA. In addition, in the absence of exon 7, the open reading frame that starts from the ATG start codon immediately upstream of exon 6 contains a stop codon in the fragment of exon 8 of SMN. Thus, in the presence of compounds that increase the inclusion of exon 7 of SMN2 into mRNA transcribed from the SMN2 gene, more transcripts containing exon 7 and more functional reporter are produced. A schematic illustration of this description can be found in Figure 1.
[001594] The DNA sequence of the minigene from the SMN2-A construct SEQ ID NO. 21 is provided in Figure 2a. A picture of the minigene SMN2-A subsequences is shown in Figure 2b.
[001595] Example 2 [001596] SMN2 minigene mRNA splicing RT-qPCR assay in cultured cells [001597] The reverse transcription-quantitative PCR-based (RT-qPCR) assay is used to quantify the level of the full length SMN2 minigene mRNA containing SMN2 exon 7 in a HEK293H cell line stably transfected with said minigene and treated with a test compound.
429
2017204248 22 Jun 2017 [001598] Materials
Material Source
HEK293H cells Cells-To-Ct lysis buffer ATCC Catalog No. CRL-1573 Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4399002
DMEM Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960-044
96-well flat-bottom plates RT-PCR Enzyme Mix Becton Dickinson Catalog No.: 353072 Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388520 (also included in AgPath-ID Kit Catalog No.: 4387391)
RT-PCR buffer Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388519 (also included in AgPath-TD Kit Catalog No.: 4387391)
AgPath-ID One-Step RT- PCR Kit Thermocycler Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4387391 Life Technologies, Inc. (formerly Applied Biosystems) 7900HT
[001599] Protocol. HEK293H cells stably transfected with the SMN2-A minigene construct described above (10,000 cells/well) are seeded in 200 pL of cell culture medium (DMEM plus 10% FBS, with 200 pg/mL hygromycin) in 96-well flat-bottom plates and the plate is immediately swirled to ensure proper dispersal of cells, forming an even monolayer of cells. Cells are allowed to attach for at least 4-6 hours. Test compounds are serially diluted 3.16-fold in 100% DMSO to generate a 7-point concentration curve. A solution of test compound (1 pL, 200x in DMSO) is added to each cell-containing well and the plate is incubated for 24 hours in a cell culture incubator (37°C, 5% CO2, 100% relative humidity). 2 replicates are prepared for each test compound concentration. The cells are then lysed in Cells-To-Ct lysis buffer and the lysate is stored at -80°C.
[001600] Full length SMN2-A minigene and GAPDH mRNA are quantified using the following primers and probes provided in Table 3. Primer SMN Forward A (SEQ ID NO. 1) hybridizes to a nucleotide sequence in exon 7 (nucleotide 22 to nucleotide 40), primer SMN Reverse A (SEQ ID NO. 2) hybridizes to a nucleotide sequence in the coding sequence of Firefly luciferase, SMN Probe A (SEQ ID NO. 3) hybridizes to a nucleotide sequence in exon 7 (nucleotide 50 to nucleotide 54) and exon 8 (nucleotide 1 to nucleotide 21). The combination of these three oligonucleotides detects only SMN1 or SMN2 minigenes (RT-qPCR) and will not detect endogenous SMN1 or SMN2 genes.
430
2017204248 22 Jun 2017 [001601] Table 3
Primers/Probes Sequence Source
SMN Forward SEQ ID NO.l: GAAGGAAGGTGCTCACATT PTC1
Primer A
SMN Reverse SEQ ID NO.2: TCTTTATGTTTTTGGCGTCTTC pTCi
Primer A
SMN Forward SEQ ID NO.3: 6FAM- pTCi
Probe A AAGGAGAAATGCTGGCATAGAGCAGC-TAMRA hGAPDH Forward SEQ ID NO.4: VIC-CGCCTGGTCACCAGGGCTGCT-LTI
ProbeTAMRA hGAPDH Forward SEQ ID NO.5: CAACGGATTTGGTCGTATTGGLTI
Primer hGAPDH Reverse SEQ ID NO.6: TGATGGCAACAATATCCACTTTACCLTI
Primer [001602] 1 Primers and probe designed by PTC Therapeutics, Inc.; 2 Commercially available from Life Technologies, Inc. (formerly Invitrogen).
[001603] The SMN forward and reverse primers are used at final concentrations of 0.4 μΜ.
The SMN probe is used at a final concentration of 0.15 μΜ. The GAPDH primers are used at final concentrations of 0.2 μΜ and the probe at 0.15 μΜ.
[001604] The SMN2-minigene GAPDH mix (15 pL total volume) is prepared by combining
7.5 pL of 2x RT-PCR buffer, 0.4 pL of 25x RT-PCR enzyme mix, 0.75 pL of 20x GAPDH primer-probe mix, 4.0075 pL of water, 2 pL of 10-fold diluted cell lysate, 0.06 pL of 100 pM SMN forward primer, 0.06 pL of 100 pM SMN reverse primer, and 0.225 pL of 100 pM SMN probe.
[001605] PCR is carried out at the following temperatures for the indicated time: Step 1: 48°C (15 min); Step 2: 95°C (10 min); Step 3: 95°C (15 sec); Step 4: 60°C (1 min); then repeat Steps 3 and 4 for a total of 40 cycles.
[001606] Each reaction mixture contains both SMN2-A minigene and GAPDH primers/probe sets (multiplex design), allowing simultaneous measurement of the levels of two transcripts. [001607] Two SMN spliced products are generated from the SMN2 minigene. The first spliced product containing exon 7, corresponding to full length SMN2 mRNA, is referred to herein using the term SMN2 minigene FL. The second spliced product lacking exon 7 is referred to herein using the term SMN2 minigene Δ7
431
2017204248 22 Jun 2017 [001608] The increase of SMN2 minigene FL mRNA relative to that in cells treated with vehicle control is determined from real-time PCR data using a modified ΔΔΟ method (as described in Livak and Schmittgen, Methods, 2001, 25:402-8). The amplification efficiency (E) is calculated from the slope of the amplification curve for SMN2 minigene FL and GAPDH individually. The abundances of SMN2 minigene FL and GAPDH are then calculated as (1 + E) Ct, where Ct is the threshold value for each amplicon. The abundance of SMN2 minigene FL is normalized to GAPDH abundance. The normalized SMN2 minigene FL abundance from test compound-treated samples is then divided by normalized SMN2 minigene FL abundance from vehicle-treated cells to determine the level of SMN2 FL mRNA relative to vehicle control. [001609] Results. As seen in Figure 3, cells treated with Compound 6 (Figure 3 a) and Compound 170 (Figure 3b) increased SMN2 minigene FL mRNA at low concentrations. The two test compounds fully restored exon 7 inclusion relative to untreated cells.
[001610] For compounds of Formula (I) or a form thereof disclosed herein, Table 4 provides the ECi.5x for production of full length SMN2 mRNA that was obtained from the 7-point concentration data generated for each test compound according to the procedure of Biological Example 2. The term “ECi.5X for production of full length SMN2 mRNA” is defined as that concentration of test compound that is effective in increasing the amount of full length SMN2 mRNA to a level 1.5-fold greater relative to that in vehicle-treated cells. An ECi.5X for production of full length SMN2 mRNA between > 3 μΜ and < 30 μΜ is indicated by one star (*), an ECi.5x between > 1 μΜ and < 3 μΜ is indicated by two stars (**), an ECi.5X between > 0.3 μΜ and < 1 μΜ is indicated by three stars (***), an ECi.sx between >0.1 μΜ and < 0.3 μΜ is indicated by four stars (****) and an ECi.5X <0.1 μΜ is indicated by five stars (*****) [001611] Table 4
Cpd ECisx Cpd ECisx Cpd EC15x
1 *** 280 ** 558 **
2 ** 281 4= 4= * 4= 559 **
3 *** 282 * * * 560 **
4 ** 283 ***** 561 *****
5 * 284 *** 562 ***
6 285 ***** 563 ****
432
2017204248 22 Jun 2017
Cpd ECi.Sx Cpd EC1.5x Cpd EC1Sx
7 *** 286 *** 564 **
8 287 ***** 565 *****
9 ** 288 ***** 566 *****
10 ** 289 ***** 567
11 *** 290 ***** 568 *****
12 *** 291 ***** 569 *****
13 ** 292 ***** 570
14 ** 293 ***** 571
15 ** 294 ***** 572
16 ** 295 ***** 573 ***
17 ** 296 ***** 574 ***
18 297 ***** 575 ***
19 ** 298 * * * 576 *****
20 ** 299 ***** 577 ^4 ^4 ^4
21 * 300 ***** 578 *****
22 *** 301 ** 579
23 * 302 ***** 580 *****
24 ** 303 ***** 581
25 ** 304 ***** 582 *****
26 * 305 ***** 583 *****
27 * 306 ***** 584 *****
28 * 307 ***** 585 *****
29 * 308 ***** 586
30 sjc sj« sj« 309 ***** 587 *****
31 ** 310 ***** 588 *****
32 ** 311 589
33 ** 312 ***** 590 ***
34 ** 313 ** 591 ***
35 * 314 ***** 592 ****
36 * 315 ***** 593 *****
37 ** 316 * * * * 594 ****
38 * 317 * * * 595 *****
39 * 318 ***** 596 *****
40 * 319 ***** 597
41 *** 320 *** 598
433
2017204248 22 Jun 2017
Cpd ECL5x Cpd EC1.5x Cpd EC1Sx
42 ** 321 ** 599 *****
43 **** 322 ***** 600 ****
44 ** 323 **** 601 *****
45 * 324 *** 602 *****
46 ** 325 *** 603 ****
47 ** 326 ** 604 ***
48 * 327 ***** 605 ***
49 * 328 ***** 606 *****
50 * 329 ***** 607 *****
51 * 330 608
52 * 331 ***** 609 *****
53 ** 332 * * * 610 *****
54 ** 333 * * * * 611 ***
55 ** 334 ***** 612 ^4 ^4 ^4
56 ** 335 ***** 613 *****
57 * 336 * * * * 614 *****
58 * 337 ***** 615 *****
59 ** 338 ***** 616 *****
60 ** 339 ***** 617 *****
61 *** 340 ***** 618 *****
62 **** 341 *** 619 ****
63 ** 342 ***** 620 ***
64 * 343 ***** 621 ***
65 * 344 **** 622 **
66 *** 345 ***** 623 *****
67 **** 346 ***** 624 *****
68 347 ***** 625 **
69 348 626
70 ** 349 ***** 627
71 ** 350 ***** 628 ***
72 jk 351 ***** 629 *****
73 * 352 ***** 630 *****
74 >< 353 * * * * 631
75 >< 354 ***** 632 *****
76 *** 355 ***** 633 *****
434
2017204248 22 Jun 2017
Cpd ECi.Sx Cpd EC1.5x Cpd EC1Sx
77 *** 356 ***** 634 *****
78 ** 357 **** 635 *****
79 **** 358 ***** 636 *****
80 ** 359 ***** 637 *****
81 *** 360 ** 638 *****
82 ** 361 **** 639 *****
83 *** 362 *** 640 *****
84 ** 363 *** 641 *****
85 ** 364 ** 642 *****
86 365 643
87 366 ***** 644
88 ** 367 ***** 645 *****
89 ** 368 ***** 646 ***
90 ** 369 ***** 647 s|<
91 ** 370 * * * * 648 *****
92 ** 371 * * * * 649 *****
93 ** 372 ***** 650 *****
94 ** 373 ***** 651 *****
95 ** 374 ***** 652 *****
96 *** 375 ***** 653 *****
97 ** 376 ***** 654 *****
98 ** 377 *** 655 *****
99 *** 378 ***** 656 *****
100 *** 379 **** 657 *****
101 *** 380 **** 658 *****
102 *** 381 **** 659 *****
103 382 ***** 660 *****
104 383 * * 661 *****
105 384 ***** 662 *****
106 *** 385 ***** 663 *****
107 *** 386 * * * 664
108 **** 387 * * * 665
109 sjc 388 ***** 666 ****
110 **** 389 ** 667 *****
111 **** 390 *** 668 *****
435
2017204248 22 Jun 2017
Cpd ECL5x Cpd EC1.5x Cpd EC1Sx
112 *** 391 ** 669 *****
113 ** 392 **** 670 *****
114 ** 393 ***** 671 *****
115 394 **** 672 *****
116 **** 395 *** 673 *****
117 >< 396 **** 674 *****
118 397 ***** 675 *****
119 398 *** 676 *****
120 ψ φ ψ ψ 399 *** 677 *****
121 400 **** 678 *****
122 ** 401 **** 679 *****
123 ** 402 ***** 680 *****
124 *** 403 ***** 681 *****
125 *** 404 * 682
126 **** 405 * * * * 683 *****
127 *** 406 * * * 684 ****
128 *** 407 ***** 685 ****
129 *** 408 ***** 686 ***
130 ** 409 ***** 687 *****
131 410 ***** 688 **
132 411 ***** 689 ****
133 412 ***** 690 *****
134 >< 413 ***** 691 *****
135 sjc sj« sj« 414 ***** 692 ****
136 Ψ φ 415 ***** 693 **
137 **** 416 ***** 694 *****
138 417 **** 695 *****
139 ** 418 ***** 696 *****
140 ** 419 * * * * 697 *****
141 420 ***** 698 *****
142 *** 421 ***** 699 *****
143 422 ***** 700 *****
144 423 ***** 701 *****
145 ** 424 ***** 702 *****
146 ** 425 ***** 703 *****
436
2017204248 22 Jun 2017
Cpd ECi.Sx Cpd EC1.5x Cpd EC1Sx
147 ** 426 *** 704 ****
148 427 ** 705 *****
149 *** 428 *** 706 *****
150 *** 429 ***** 707 *****
151 430 ***** 708 *****
152 431 ***** 709 *****
153 *** 432 ***** 710 *****
154 ** 433 ***** 711 *****
155 **** 434 *** 712 *****
156 *** 435 **** 713 *****
157 ** 436 * * 714 *****
158 ** 437 * * * * 715 *****
159 ** 438 ***** 716 *****
160 439 * * * 717
161 *** 440 ***** 718 *****
162 *** 441 ***** 719 *****
163 ** 442 ***** 720 *****
164 *** 443 ***** 721 *****
165 ** 444 *** 722 *****
166 *** 445 ***** 723 *****
167 446 ***** 724 ***
168 *** 447 **** 725 ****
169 >< 448 ***** 726 ***
170 sjc sjc sjc ^4 449 ***** 727 *****
171 Ψ φ 450 *** 728 ****
172 ^4 ^4 ^4 ^4 5·« 451 ***** 729 ****
173 452 ***** 730 *****
174 ** 453 ***** 731 *****
175 454 ***** 732 ***
176 *** 455 * * * * 733 *****
177 **** 456 * * * * 734 *****
178 *** 457 ***** 735 *****
179 *** 458 ***** 736 *****
180 ** 459 ***** 737 *****
181 ** 460 **** 738 *****
437
2017204248 22 Jun 2017
Cpd ECi.Sx Cpd EC1.5x Cpd EC1Sx
182 *** 461 *** 739 *****
183 ** 462 ***** 740 ***
184 ** 463 ***** 741 *****
185 >j« sjc sj« sj« 464 **** 742 ****
186 >j« sjc sj« sj« 465 *** 743 *****
187 ** 466 ***** 744 *****
188 467 ***** 745 *****
189 *** 468 ***** 746 *****
190 *** 469 **** 747 *****
191 ** 470 ***** 748 *****
192 ** 471 ***** 749 *****
193 472 ***** 750 *****
194 473 ***** 751 *****
195 sjc sj« sj« 474 ***** 752 sj< sj< sj< sj<
196 sjc sj« sj« 475 * * * 753 *****
197 **** 476 ***** 754 *****
198 >j« sjc sj« sj« 477 ***** 755 *****
199 *** 478 ***** 756 *****
200 ** 479 ***** 757 ***
201 >j« sjc sj« sj« 480 ***** 758 ***
202 *** 481 ***** 759 ****
203 ** 482 ***** 760 *****
204 >< 483 ***** 761 *****
205 *** 484 ***** 762 *****
206 ** 485 ***** 763 *****
207 486 ***** 764 **
208 487 765 **
209 ^4 ^4 ^4 ^4 ^4 488 ***** 766 *****
210 ifc ifc ^4 ^4 ^4 489 * * * * 767 *****
211 >j4 ijC Sj4 Sj4 ^4 490 ***** 768 *****
212 **** 491 * * * 769
213 **** 492 * * * 770 *****
214 *** 493 ***** 771 *****
215 *** 494 ***** 772 *****
216 *** 495 ***** 773 *****
438
2017204248 22 Jun 2017
Cpd ECi.Sx Cpd EC1.5x Cpd EC1Sx
217 *** 496 ***** 774 *****
218 **** 497 ***** 775 ***
219 498 ***** 776 **
220 *** 499 ***** 777 **
221 500 **** 778 *****
222 *** 501 **** 779 *****
223 *** 502 ***** 780 *****
224 *** 503 ***** 781 *****
225 ** 504 ***** 782 *****
226 *** 505 ***** 783 *****
227 ** 506 ***** 784
228 ** 507 * * * * 785 *****
229 *** 508 ***** 786 ****
230 *** 509 ***** 787 ^4 ^4 ^4 ^4 ^4
231 *** 510 ***** 788 *****
232 ** 511 ***** 789 *****
233 *** 512 ***** 790 *****
234 ?l< 513 **** 791 *****
235 *** 514 **** 792 *****
236 ** 515 ***** 793 *****
237 ** 516 ***** 794 *****
238 *** 517 ***** 795 *****
239 ** 518 ***** 796 *****
240 ^4 sjc sjc sjc ^4 519 ***** 797 **
241 **** 520 **** 798 *****
242 521 **** 799 *****
243 ^4^4^4^4^4 522 ***** 800 *****
244 ^4 ^4 ^4 ^4 ^4 523 ***** 801
245 Φ** 524 * * * * 802 **
246 ** 525 * * * * 803 *****
247 ^4 ^4 ^4 ^4 ^4 526 * * * 804 *****
248 *** 527 ***** 805
249 *** 528 ***** 806 *****
250 ^4 S]C i]4 i]4 ^4 529 ***** 807 *****
251 ^4 S]C i]4 i]4 ^4 530 ***** 808 *****
439
2017204248 22 Jun 2017
Cpd EC1.5x Cpd ECisx Cpd EC15x
252 **** 531 **** 809 *****
253 ** 532 ***** 810 *****
254 **** 533 ***** 811 ***
255 *** 534 ***** 812 *****
256 *** 535 ***** 813 *****
257 536 ***** 814 *****
258 ^4 sjc ^4 ^4 ^4 537 ***** 815 *****
259 ^4 sjc ^4 ^4 ^4 538 ***** 816 *****
260 **** 539 ***** 817 *****
261 540 ***** 818
262 541 819 *****
263 542 ***** 820 *****
264 543 ***** 821 *****
265 ** 544 ***** 822
266 ** 545 823 *
267 546 ***** 824 ***
268 547 ***** 825 ***
269 548 ***** 826
270 549 ***** 827 *****
271 550 ***** 828 *****
272 551 829
273 552 830 *****
274 553 831
275 ^4 sjc ^4 ^4 ^4 554 832
276 *** 555 ** 833 *****
277 ** 556 Ί=Ί=Ί= 834 *****
278 ** 557 ** 835 *****
279
[001612] Example 3 [001613] Endogenous SMN2 mRNA RT-qPCR splicing assay in cultured cells [001614] The reverse transcription-quantitative PCR-based (RT-qPCR) assay is used to quantify the levels of the full length and Δ7 SMN2 mRNA in primary cells and cell lines containing the SMN2 gene treated with a test compound.
440
2017204248 22 Jun 2017 [001615] Materials
Material Source
SMA Type 1 human cells Cells-To-Ct lysis buffer GM03813 (Coriell Institute) Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4399002
DMEM Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960044
96-well flat-bottom plates RT-PCR Enzyme Mix Becton Dickinson Catalog # 353072 Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388520 (also included in AgPath-ID Kit Catalog No.: 4387391)
RT-PCR buffer Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388519 (also included in AgPath-ID Kit Catalog No.: 4387391)
AgPath-ID One-Step RT- PCR Kit Thermocycler Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4387391 Life Technologies, Inc. (formerly Applied Biosystems) 7900HT
[001616] Protocol. GM03813 SMA patient cells (5,000 cells/well) are seeded in 200 pL of cell culture medium (DMEM plus 10% FBS) in 96-well flat-bottom plates and the plate is immediately swirled to ensure proper dispersal of cells, forming an even monolayer of cells. Cells are allowed to attach for at least 4-6 hrs. Test compounds are serially diluted 3.16-fold in 100% DMSO to generate a 7-point concentration curve. A solution of test compound (1 pL, 200x in DMSO) is added to each test well and 1 pL DMSO is added to each control well. The plate is incubated for 24 hrs in a cell culture incubator (37°C, 5% CO2, 100% relative humidity). The cells are then lysed in Cells-To-Ct lysis buffer and the lysate is stored at -80°C.
[001617] SMN2-specific spliced products and GAPDH mRNA are identified using the following primers and probes in Table 5. Primer SMN FL Forward B (SEQ ID NO. 7) hybridizes to a nucleotide sequence in exon 7 (nucleotide 32 to nucleotide 54) and exon 8 (nucleotide 1 to nucleotide 4), primer SMN Δ7 Forward B (SEQ ID NO. 8) hybridizes to a nucleotide sequence in exon 6 (nucleotide 87 to nucleotide 111) and exon 8 (nucleotide 1 to nucleotide 3), primer SMN Reverse B (SEQ ID NO. 9) hybridizes to a nucleotide sequence in exon 8 (nucleotide 39 to nucleotide 62), probe SMN Probe B (SEQ ID NO. 10) hybridizes to a nucleotide sequence in exon 8 (nucleotide 7 to nucleotide 36). These primers and probes hybridize to nucleotide sequences common to human SMN1 and SMN2 mRNA. Since the SMA patient cells used in Example 3 contain only the SMN2 gene, RT-qPCR can quantify only SMN2 full-length and Δ7 mRNA.
441
2017204248 22 Jun 2017 [001618] Table 5
Primer/Probe
Sequence
Source
SMN FL Forward
Primer B
SMN Δ7 Forward
Primer B
SMN Reverse
Primer B
SMN Forward
Probe B hGAPDH Forward
Probe hGAPDH Forward
Primer hGAPDH Reverse
Primer
SEQ ID NO.7: GCTCACATTCCTTAAATTAAGGAGAAA
SEQ ID NO.8: TGGCTATCATACTGGCTATTATATGGAA
SEQ ID NO.9: TCCAGATCTGTCTGATCGTTTCTT
SEQ ID NO.10: 6FAMCTGGCATAGAGCAGCACTAAATGACACCAC-TAMRA
SEQ ID NO.4: VIC-CGCCTGGTCACCAGGGCTGCTTAMRA
SEQ ID NO.5: CAACGGATTTGGTCGTATTGG
SEQ ID NO.6: TGATGGCAACAATATCCACTTTACC
PTC1
PTC1
PTC1
PTC1
LTI2
LTI2
LTI2 [001619] 1 Primers and probe designed by PTC Therapeutics, Inc.; 2 Commercially available from Life Technologies, Inc. (formerly Invitrogen).
[001620] The SMN forward and reverse primers are used at final concentrations of 0.4 μΜ.
The SMN probe is used at a final concentration of 0.15 μΜ. GAPDH primers are used at final concentrations of 0.1 μΜ and the probe at 0.075 μΜ.
[001621] The SMN-GAPDH mix (10 pL total volume) is prepared by combining 5 pL of 2x RT-PCR buffer, 0.4 pL of25x RT-PCR enzyme mix, 0.25 pL of20x GAPDH primer-probe mix, 1.755 pL water, 2.5 pL of cell lysate, 0.04 pL of 100 μΜ SMN FL or SMN Δ7 forward primer, 0.04 pL of 100 μΜ SMN reverse primer, and 0.015 pL of 100 μΜ probe.
[001622] PCR is carried out at the following temperatures for the indicated time: Step 1: 48°C (15 min); Step 2: 95°C (10 min); Step 3: 95°C (15 sec); Step 4: 60°C (1 min); then, repeat Steps 3 and 4 for a total of 40 cycles.
[001623] Each reaction mixture contains either SMN2 FL and GAPDH or SMN2 Δ7 and GAPDH primers/probe sets (multiplex design), allowing simultaneous measurement of the levels of two transcripts.
[001624] The endogenous SMN2 gene gives rise to two alternatively spliced mRNA. The full length SMN2 mRNA that contains exon 7 is referred to herein using the term SMN2 FL. The truncated mRNA that lacks exon 7 is referred to herein using the term SMN2 Δ7.
442
2017204248 22 Jun 2017 [001625] The increase of SMN2 FL and decrease in SMN2 Δ7 mRNA relative to those in cells treated with vehicle control are determined from real-time PCR data using a modified ΔΔί,Ί method (as described in Livak and Schmittgen, Methods, 2001, 25:402-8). The amplification efficiency (E) is calculated from the slope of the amplification curve for SMN2 FL, SMN2 Δ7, and GAPDH individually. The abundances of SMN2 FL, SMN2 Δ7, and GAPDH are then calculated as (1 + E)‘Ct, where Ct is the threshold value for each amplicon. The abundances of SMN2 FL and SMN2 Δ7 are normalized to GAPDH abundance. The normalized SMN2 FL and SMN2 Δ7 abundances from test compound-treated samples are then divided by normalized SMN2 FL and SMN2 Δ7 abundances, respectively, from vehicle-treated cells to determine the levels of SMN2 FL and SMN2 Δ7 mRNA relative to vehicle control.
[001626] Results. As seen in Figure 4, cells treated with increasing concentrations of Compound 6 (Figure 4a) and Compound 170 (Figure 4b) contain progressively more SMN2 FL mRNA and less SMN2 Δ7 mRNA than those treated with vehicle, indicating a correction of SMN2 alternative splicing.
[001627] Example 4 [001628] Endogenous SMN2 mRNA end-point semi-quantitative RT-PCR splicing assay in cultured cells [001629] The endpoint reverse transcription-PCR splicing assay is used to visualize and quantify the levels of the full length and Δ7 SMN2 mRNA in primary cells and cell lines containing the SMN2 gene treated with a test compound.
[001630] Materials
Material Source
SMA Type 1 human cells Cells-To-Ct lysis buffer GM03813 (Coriell Institute) Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4399002
DMEM Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960-044
96-well flat-bottom plates Platinum Taq HiFi DNA Polymerase Super Mix iScript RT enzyme Kit Ethidium bromide 2% agarose E gels 48-Well Double Comb Becton Dickinson Catalog No.: 353072 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11304-016 BioRad: Catalog No.: 170-8890 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: G8008-02
443
2017204248 22 Jun 2017
Material Source
Gel Documentation System UVP Gel Doc It 310 Imaging system [001631] Protocol. GM03813 SMA patient cells (5,000 cells/well) are seeded in 200 pL of cell culture medium (DMEM plus 10% FBS) in 96-well flat-bottom plates and the plate is immediately swirled to ensure proper dispersal of cells, forming an even monolayer of cells. Cells are allowed to attach for at least 4-6 hrs. Test compounds are serially diluted 3.16-fold in 100% DMSO to generate a 7-point concentration curve. A solution of test compound (1 pL, 200x in DMSO) is added to each test well and 1 pL DMSO is added to each control well. The plate is incubated for 24 hrs in a cell culture incubator (37°C, 5% CO2, 100% relative humidity). The cells are then lysed in Cells-To-Ct lysis buffer and the lysate is stored at ~80°C.
[001632] SMN FL and Δ7 mRNA are identified using the following primers in Table 6. These primers hybridize to a nucleotide sequence in exon 6 (SMN Forward C, SEQ ID NO. 11) (nucleotide 43 to nucleotide 63) and exon 8 (SMN Reverse C, SEQ ID NO. 12) (nucleotide 51 to nucleotide 73) common to human SMNl and SMN2 mRNA. Since the SMA patient cells used in Example 4 contain only the SMN2 gene, RT-PCR can visualize and quantify only SMN2 fulllength and SMN2 Δ7 mRNA.
[001633] Table 6
Primer Sequence Source
SMN Forward C SEQ ID NO. 11: GATGCTGATGCTTTGGGAAGT PTC1
SMN ReverseC SEQ TD NO.12: CGCTTCACATTCCAGATCTGTC PTC1 [001634] 1 Primers designed by PTC Therapeutics, Inc.
[001635] To synthesize cDNA, 5 pL of lysate, 4 pL of 5x iScript reaction mix, 1 pL of reverse transcriptase, and 10 pL of water are combined and incubated 5 min at 25°C followed by 30 min at 42°C, followed by 5 min at 85°C. The cDNA solution is stored at -20°C.
[001636] To perform endpoint PCR, 5 pL of cDNA, 0.2 pL of 100 pM forward primer, 0.2 pL of 100 pM reverse primer, and 22.5 pL of polymerase super mix are combined in a 96 well semiskirted PCR plate. PCR is carried out at the following temperatures for the indicated time: Step 1: 94°C (2 min), Step 2: 94°C (30 sec), Step 3: 55°C (30 sec), Step 4: 68°C (1 min), then repeat Steps 2 to 4 for a total of 33 cycles, then hold at 4°C.
444
2017204248 22 Jun 2017 [001637] 10 pL of each PCR sample is electrophoretically separated on a 2% agarose E-gel for minutes stained with double-stranded DNA (dsDNA) staining reagents (e.g., ethidium bromide) and visualized using a gel imager.
[001638] Results. As seen in Figure 5, cells treated with increasing concentrations of Compound 6 (Figure 5a) or Compound 170 (Figure 5b) contain progressively more SMN2 FL mRNA and less SMN2 Δ7 mRNA, indicating a correction of SMN2 alternative splicing.
[001639] Example 5 [001640] SMN2 mRNA RT-qPCR splicing assay in animal tissues [001641] The reverse transcription-quantitative PCR-based (RT-qPCR) assay is used to quantify the levels of the full length and Δ7 SMN2 mRNA in tissues from mice treated with test compound.
[001642] Materials
Material Source
Tissues from C/C-allclc The Jackson Laboratory, strain No.: 008714 (B6.129-
SMA mice S 1)1111 /SMN2)Mrph /
Tissues from Δ7 SMA mice The Jackson Laboratory, strain No.: 005025 (FVB.Cg- Tg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmIMsdU)
RT-PCR Enzyme Mix Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388520 (also included in AgPath-ID Kit Catalog No.: 4387391)
RT-PCR buffer Life Technologies, Inc. (formerly Applied Biosystems) Part No.: 4388519 (also included in AgPath-ID Kit Catalog No.: 4387391)
AgPath-ID One-Step RT- Life Technologies, Inc. (formerly Applied Biosystems) Catalog
PCR Kit No.: 4387391
Mouse GAPDH primers and Life Technologies, Inc. (formerly Applied Biosystems) Catalog
probes No.: 4352339E
QIAzol Lysis Reagent Qiagen Catalog No.: 79306
RNeasy Lipid Tissue Mini Kit Qiagen Catalog No.: 74804
5 mm Stainless Steel Bead Qiagen Catalog No.: 69989
TissueLyzer II Qiagen Catalog No.: 85300
Thermocycler Life Technologies, Inc. (formerly Applied Biosystems) 7900HT
445
2017204248 22 Jun 2017 [001643] Protocol. C/C-allele SMA mice are treated by oral gavage two times per day (BID) for 10 days with test compounds re-suspended in 0.5% HPMC and 0.1% Tween-80. Tissue samples were collected and snap frozen for RNA purification.
[001644] Tissue samples (20-40 mg) are homogenized in QIAzol Lysis Reagent for 2 minutes at 20 Hz in the TissueLyser II using one stainless steel bead. After addition of chloroform, the homogenate is separated into aqueous and organic phases by centrifugation. RNA partitioned to the upper, aqueous phase is extracted and ethanol is added to provide appropriate binding conditions. The sample is then applied to the RNeasy spin column from the RNeasy Mini Kit, where total RNA binds to the membrane. The RNA is eluted in RNase-free water then stored at
-20°C and subsequently analyzed using the TaqMan RT-qPCR on the 7900HT Thermocycler.
Total RNA is diluted ten fold and 2.5 pL of the diluted sample is added to the TaqMan RT-qPCR mixture.
[001645] SMN2 spliced products are identified using the following primers and probe in Table
7. Primer SMN FL Forward B (SEQ ID NO. 7) hybridizes to a nucleotide sequence in exons 7 and 8, primer SMN A7 Forward B (SEQ ID NO. 8) hybridizes to a nucleotide sequence in exons 6 and 8, primer SMN Reverse B (SEQ ID NO. 9) hybridizes to a nucleotide sequence in exon 8, probe SMN Probe B (SEQ ID NO. 10) hybridizes to a nucleotide sequence in exon 8. These primers and probe hybridize to nucleotide sequences common to human SMN1 and SMN2 mRNA. Since the SMA patient cells used in Example 5 contain only the SMN2 gene, RT-qPCR can quantify only SMN2 full-length and Δ7 mRNA.
[001646] Table 7
Primer/Probe
Sequence
Source
SMN FL Forward
Primer B
SEQ ID NO.7: GCTCACATTCCTTAAATTAAGGAGAAA
PTC1
SMN Δ7 Forward
Primer B
SEQ ID NO.8: TGGCTATCATACTGGCTATTATATGGAA
PTC1
SMN Reverse
Primer B
SEQ ID NO.9: TCCAGATCTGTCTGATCGTTTCTT
PTC1
SMN Forward
Probe B
SEQ ID NO.10: 6FAM- pTCi
CTGGCATAGAGCAGCACTAAATGACACCAC-TAMRA [001647] 1 Primers and probe designed by PTC Therapeutics, Inc.
446
2017204248 22 Jun 2017 [001648] The SMN forward and reverse primers are used at final concentrations of 0.4 μΜ. The SMN probe is used at a final concentration of 0.15 μΜ. The SMN-GAPDH Mix (10 pL total volume) is prepared by combining 5 pL of 2x RT-PCR buffer, 0.4 pL of 25x RT-PCR enzyme mix, 0.5 pL of 20x GAPDH primer-probe mix, 1.505 pL of water, 2.5 pL of RNA solution, 0.04 pL of 100 pM forward primer, 0.04 pL of 100 pM reverse primer, and 0.015 pL of 100 pM SMN probe.
[001649] Each PCR cycle was carried out at the following temperatures for the indicated time: Step 1: 48°C (15 min); Step 2: 95°C (10 min); Step 3: 95°C (15 sec); Step 4: 60°C (1 min); then, repeat Steps 3 and 4 for a total of 40 cycles.
[001650] Each reaction mixture contains either SMN2 FL and mGAPDH or SMN2 Δ7 and mGAPDH primers/probe sets (multiplex design), allowing simultaneous measurement of the levels of two transcripts.
[001651] The increase of SMN2 FL and decrease in SMN2 Δ7 mRNA relative to those in tissues from animals treated with vehicle control are determined from real-time PCR data using a modified AACt method (as described in Livak and Schmittgen, Methods, 2001, 25:402-8). The amplification efficiency (E) is calculated from the slope of the amplification curve for SMN2 FL, SMN2 Δ7, and GAPDH individually. The abundances of SMN2 FL, SMN2 Δ7, and GAPDH are then calculated as (1 + E)’Ct, where Ct is the threshold value for each amplicon. The abundances of SMN2 FL and SMN2 Δ7 are normalized to GAPDH abundance. The normalized SMN2 FL and SMN2 Δ7 abundances from test compound-treated samples are then divided by normalized SMN2 FL and SMN2 Δ7 abundances, respectively, from vehicle-treated cells to determine the levels of SMN2 FL and SMN2 Δ7 mRNA relative to vehicle control.
[001652] Results. As seen in Figure 6, tissues of animals treated with Compound 6 (Figure 6a) and Compound 170 (Figure 6b) contain substantially more SMN2 FL mRNA and less SMN2 Δ7 mRNA than those treated with vehicle, indicating a correction of SMN2 alternative splicing.
447
2017204248 22 Jun 2017
The Jackson Laboratory, strain No.: 008714 (B6.129$mft]tm5(Smnl/SMN2)Mrph
The Jackson Laboratory, strain No.: 005025 (FVB.CgTg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmlMsd/T)
Qiagen Catalog No.: 74804
Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11304-016
Bio Rad Catalog No.: 170-8890
Eppcndorf Catalog No.: 951020389
Life Technologies, Inc. (formerly Invitrogen) Catalog No.: G8008-02
UVP Gel Doc It 310 Imaging system [001653] Example 6 [001654] Endogenous SMN2 mRNA end-point semi-quantitative RT-PCR splicing assay in animal tissues [001655] The endpoint reverse transcription-PCR (RT-PCR) splicing assay is used to quantify the levels of the full length and Δ7 SMN2 mRNA in tissues from mice treated with test compound.
[001656] Materials
Material Source
Tissues from C/C-allele SMA mice
Tissues from ΔΕχοη7 SMA mice
Qiagen RNeasy lipid Kit
Platinum Taq HiFi DNA
Polymerase Super Mix iScript RT enzyme Kit
Twin.tcc 96-Wcll Semiskirted
PCR Plate
Ethidium bromide 2% agarose E gels 48-Well Double Comb Gel Documentation System [001657] Protocol. C/C-allele SMA mice are treated by oral gavage BID for 10 days with test compounds in 0.5% HPMC and 0.1% Tween-80. Tissue samples are collected and snap frozen for RNA purification.
[001658] Tissue samples (20-40 mg) are homogenized in QIAzol Lysis Reagent for 2 minutes at 20Hz in the TissueLyser II using one stainless steel bead. After addition of chloroform, the homogenate is separated into aqueous and organic phases by centrifugation. RNA partitioned to the upper, aqueous phase is extracted and ethanol is added to provide appropriate binding conditions. The sample is then applied to the RNeasy spin column from the RNeasy Mini Kit, where total RNA binds to the membrane. The RNA is eluted in RNase-free water then stored at -20°C.
[001659] SMN2 spliced products are identified using the following amplification primers in Table 8. These primers hybridize to a nucleotide sequence in exon 6 (SMN Forward D, SEQ ID
448
2017204248 22 Jun 2017
NO. 13) (nucleotide 22 to nucleotide 46) and exon 8 (SMN Reverse C, SEQ ID NO. 12), common to human SMN 1 and SMN2 mRNA.
[001660] Table 8
Primer Sequence Source
SMN Forward D SEQ ID NO. 13: ATATGTCCAGATTCTCTTGATGATG PTC1
SMN Reverse C SEQ ID NO. 12: CGCTTCACATTCCAGATCTGTC PTC1 [001661] 1 Primers designed by PTC Therapeutics, Inc.
[001662] To synthesize cDNA, combine 1 pL of RNA solution (25-50 ng), 4 pL of 5x iScript reaction mix, 1 pL of reverse transcriptase, and 10 pL of water are combined and incubates 25°C for 5 min followed by 42°C for 30 min followed by 85°C for 5 min. The cDNA solution is stored at -20°C.
[001663] To perform endpoint PCR, 5 pL of cDNA, 0.2 pL of 100 pM forward primer, 0.2 pL of 100 pM reverse primer, and 22.5 pL of polymerase super mix are combined in a 96 well semiskirted PCR plate. PCR is carried out at the following temperatures for the indicated time: Step 1: 94°C (2 min), Step 2: 94°C (30 sec), Step 3: 55°C (30 sec), Step 4: 68°C (1 min), then repeat Steps 2 to 4 for a total of 33 cycles, then hold at 4°C.
[001664] 10 pL of each PCR sample is electrophoretically separated on a 2% agarose E-gel for minutes stained with dsDNA staining reagents (e.g., ethidium bromide) and visualized using a gel imager.
[001665] Results. As seen in Figure 7, tissues from mice treated with increasing concentrations of Compound 6 (Figure 7a) and Compound 170 (Figure 7b) contain progressively more SMN2 FL mRNA and less SMN2 Δ7 mRNA, indicating a correction of SMN2 alternative splicing.
[001666] Example 7 [001667] Smn protein assay in cultured cells [001668] The SMN HTRF (homogeneous time resolved fluorescence) assay is used to quantify the level of Smn protein in SMA patient fibroblast cells treated with test compounds. The results ofthe assay are shown in Table 9.
449
2017204248 22 Jun 2017 [001669] Materials
Material
Source
SMA Type 1 human cells
Protease inhibitor cocktail
Anti-SMN d2
Anti-SMN kryptate
SMN reconstitution buffer
DMEM
RIPA Lysis Buffer
Diluent Buffer
Envision Plate Reader
GM03813 (Coriell Institute)
Roche Applied Science Catalog No.: 11836145001
Blue cap Cisbio Catalog No.: 63IDC002-SMN
Red cap Cisbio Catalog No.: 63IDC002-SMN
Cisbio Catalog No.: 63IDC002-SMN-Buffer
Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960-044 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP-40, 1% Sodium deoxycholate mM Tris-HCl pH 7.5, 150 mM NaCl
Perkin Elmer Model No.: 2103 [001670] Protocol. Cells arc thawed and cultured in DMEM-10% FBS for 72 hours. Cells arc trypsinized, counted and re-suspended to a concentration of 25,000 cells/mL in DMEM-10% FBS. The cell suspension is plated at 5,000 cells per well in a 96 well microtiter plate and incubated for 3 to 5 hours. To provide a control signal, three (3) wells in the 96 well plate do not receive cells and, thus, serve as Blank control wells. Test compounds are serially diluted 3.16-fold in 100% DMSO to generate a 7-point concentration curve. 1 pL of test compound solution is transferred to cell-containing wells and cells are incubated for 48 hours in a cell culture incubator (37°C, 5% CO2, 100% relateive humidity). Triplicate samples are set up for each test compound concentration. After 48 hours, the supernatant is removed from the wells and 25 pL of the RIPA lysis buffer, containing protease inhibitors, is added to the wells and incubated with shaking at room temperature for 1 hour. 25 pL of the diluent is added and then 35 pL of the resulting lysate is transferred to a 384-well plate, where each well contains 5 pL of the antibody solution (1:100 dilution of anti-SMN d2 and anti-SMN kryptate in SMN reconstitution buffer). The plate is centrifuged for 1 minute to bring the solution to the bottom of the wells, then incubated overnight at room temperature. Fluorescence for each well of the plate at 665 nm and 620 nm is measured on an EnVision multilabel plate reader (Perkin-Elmer). [001671] The normalized fluorescence signal is calculated for each sample, Blank and vehicle control well by dividing the signal at 665 nm by the signal at 620 nm. Normalizing the signal accounts for possible fluorescence quenching due to the matrix effect ofthe lysate. The AF value (a measurement of Smn protein abundance as a percent value) for each sample well is
450
2017204248 22 Jun 2017 calculated by subtracting the normalized average fluorescence for the Blank control wells from the normalized fluorescence for each sample well, then dividing this difference by the normalized average fluorescence for the Blank control wells and multiplying the resulting value by 100. The AF value for each sample well represents the Smn protein abundance from test compound-treated samples. The AF value for each sample well is divided by the AF value for the vehicle control wells to calculate the fold increase in Smn protein abundance relative to the vehicle control.
[001672] Results. As seen in Figure 8, SMA Type 1 patient fibroblast cells treated with Compound 6 (Figure 8a) and Compound 170 (Figure 8b) show a dose dependent increase in Smn protein expression as measured by the SMN HTRF assay.
[001673] For compounds of Formula (I) or a form thereof disclosed herein, Table 9 provides the ECi 5x for Smn protein expression that was obtained from the 7-pomt concentration data generated for each test compound according to the procedure of Biological Example 7. The term “ECi .5x for Smn protein expression” is defined as that concentration of test compound that is effective in producing 1.5 times the amount of Smn protein in an SMA patient fibroblast cell compared to the amount produced from the DMSO vehicle control. An ECi.5X for Smn protein expression between > 3 μΜ and <10 μΜ is indicated by one star (*), an ECi.sx between > 1 μΜ and < 3 μΜ is indicated by two stars (**), an ECi.sx between > 0.3 μΜ and < 1 μΜ is indicated by three stars (***) and an ECi.sx < 0.3 μΜ is indicated by four stars (****).
[001674] Table 9
Cpd ECi.Sx Cpd ECiSx Cpd ECiSx
3 ** 380 *** 626 **
6 *** 381 * 627 **
8 ** 382 *** 628 *
18 ** 384 **** 629 ****
20 ** 385 *** 630 ****
22 ** 393 *** 631 ***
24 * 396 *** 632 ****
30 ** 397 **** 633 ****
43 ** 398 ** 634
61 399 *** 635
62 400 *** 636 * * * *
451
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd EC1.5x
66 * 401 *** 637 ****
67 *** 402 ** 638 ****
69 *** 403 ** 639
71 * 404 ** 640
72 *** 405 *** 641
74 **5|4 406 * 642
75 409 643 ***
79 410 644 ***
82 ** 412 645
84 ** 413 646 **
85 * 414 647
86 416 ** 648 * * * *
87 417 ** 649 * * * *
90 * 420 650 ^4 ^4 ^4 ^4
95 ** 422 ** 651 * * * *
96 *** 423 652 * * * *
99 *** 424 **** 653 ****
100 *** 425 **** 654 ****
102 *** 426 *** 655 ****
105 *** 427 * 656
106 ** 428 ** 657
109 429 658
115 430 659
116 * 431 660
117 432 661
118 *** 437 *** 662
119 438 663
120 439 ** 664
121 440 **** 665 * * * *
127 * 441 **** 666 * * *
129 * 442 **** 667 * * * *
130 * 443 668 * * * *
131 ** 444 ** 669 * * * *
132 445 *** 670 ****
133 446 ** 671 ****
452
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd ECi.5x
134 **** 448 **** 672 ****
135 **** 449 **** 673 ****
136 **** 451 *** 674 ****
137 *** 452 **** 675 ****
138 *** 453 **** 676 ***
141 454 **** 677 ***
143 457 **** 678 ****
144 458 *** 679 ****
148 ** 460 *** 680 ****
150 ** 461 ** 681
152 462 682 **
160 ΦΦΦ 463 683 * * *
161 ** 464 ** 684 * * *
162 ** 466 685 **
164 ** 467 686 **
167 ** 468 687 * * * *
169 **** 469 *** 688 **
170 **** 470 **** 689 ***
171 **** 471 **** 690 ***
172 **** 472 **** 691 ****
175 *** 473 **** 692 ***
176 * 474 **** 693 **
179 **5|« 475 ** 694 ****
180 ** 476 **** 695 ****
182 477 **** 696 ****
186 *** 478 **** 697 ****
188 480 698
189 ΦΦΦ 481 699
190 ** 482 * 700 * * * *
191 ** 484 701 * * * *
192 ** 485 **** 702 * * * *
193 **** 486 703 * * * *
194 **** 487 704 * * * *
195 *** 488 **** 705 ****
196 **** 489 ** 706 ****
453
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd EC1.5x
197 490 *** 707 ****
198 491 ** 708 ****
199 ** 492 ** 709
201 *** 493 *** 710
204 494 711
208 **5|4 495 712
209 496 713
210 497 *** 714
211 498 715
212 499 716
213 500 717
214 ** 501 718 * * *
218 ** 502 **** 719 * * * *
219 **** 503 720 ^4 ^4 ^4 ^4
221 **** 504 721 * * * *
224 *** 505 **** 722 * * * *
229 * 506 **** 723 ****
230 ** 507 *** 724 ***
231 ** 508 *** 725 ***
234 509 *** 726 **
235 ** 510 727
236 * 511 ** 728
240 512 729 ***
241 513 730
242 514 ** 731
243 515 732 ***
244 φψφφ 516 733
247 φψψψ 517 734
248 φφ$ 518 **** 735 * * * *
250 **** 519 **** 736 * * * *
251 **** 520 **** 737 * * * *
252 *** 521 738 * * * *
254 ** 522 739 * * * *
256 ** 523 **** 740 ***
257 ** 524 *** 741 ****
454
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd ECi.5x
258 *** 525 *** 742 ***
259 *** 526 ** 743 ****
260 ** 527 **** 744 ***
261 **** 528 **** 745 ****
262 *** 529 *** 746 ****
263 530 **** 747 ****
264 531 *** 748 ****
267 532 **** 749 ****
268 533 *** 750 ****
269 534 751
270 535 752
271 536 753 * * * *
272 537 **** 754 * * * *
273 **** 538 755
274 **** 539 756 * * * *
275 **** 541 757 * * *
283 **** 542 *** 759 ***
284 *** 543 **** 760 ****
285 **** 544 *** 761 ****
286 *** 545 **** 762 ****
287 **** 546 **** 763 ****
288 **** 547 **** 764 *
289 **** 548 **** 765 **
290 **** 549 **** 766 ****
291 **** 550 **** 767 ****
292 **** 551 **** 768 ****
293 552 769
294 * 553 770
295 554 **** 771 * * * *
296 555 ** 772 * * * *
297 556 ** 773 * * * *
299 φφφφ 561 774 * * * *
300 563 777 **
302 **** 565 *** 778 ***
303 **** 566 **** 779 ****
455
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd ECL5x
304 **** 567 *** 780 ****
305 **** 568 **** 781 ****
306 **** 569 **** 782 ****
307 **** 570 ** 783 ****
308 **** 571 ** 784 ***
309 **** 572 ** 785 ****
310 *** 573 ** 786 ***
312 **** 576 **** 787 ****
314 *** 577 **** 788 ****
316 ** 578 789
317 ** 579 790
318 580 791 * * * *
319 581 792 * * *
320 ** 582 793 ^4 ^4 ^4 ^4
322 583 794 * * * *
323 ** 584 795 * * * *
326 ** 585 **** 796 ****
327 **** 586 **** 797 *
329 ** 587 **** 798 ****
331 **** 588 **** 799 ****
333 ** 589 *** 800 ****
334 **** 590 ** 801 ***
335 **** 591 ** 802 *
336 **** 592 *** 803 ****
337 **** 593 **** 804 ****
338 **** 594 *** 805 ***
339 595 806
340 596 807
341 *** 597 $** 808 * * * *
342 598 *** 809 * * * *
343 599 **** 810 * * * *
344 600 ** 811 * * *
346 601 812 * * * *
349 ** 602 **** 813 ****
350 **** 603 *** 814 ****
456
2017204248 22 Jun 2017
Cpd EC1.5x Cpd EC1Sx Cpd ECi.5x
351 604 815 ****
352 605 *** 816 ****
354 *** 606 ** 817
355 *** 607 818 ***
356 *** 608 ** 819
357 *** 609 820
358 ** 610 821
359 ** 612 822 ***
366 613 824 *
367 * 614 825 **
368 615 826 **
369 ** 616 827 * * *
370 *** 617 **** 828 * * * *
371 618 829 **
372 619 830 * * *
373 620 ** 831 **
374 621 832 ***
375 622 ** 833 **
376 623 834 ****
377 ** 624 835
378 **
[001675] For compounds of Formula (I) or a form thereof disclosed herein, Table 10 provides the maximum fold (Fold) increase of Smn protein that was obtained from the 7-point concentration data generated for each test compound according to the procedure of Biological Example 7. A maximum fold increase of< 1.2 is indicated by one star (*), a fold increase between > 1.2 and < 1.35 is indicated by two stars (**), a fold increase between > 1.35 and <1.5 is indicated by three stars (***), a fold increase between >1.5 and < 1.65 is indicated by four stars (****) and a fold increase > 1.65 is indicated by five stars (*****).
[001676] Table 10
Cpd Fold Cpd Fold Cpd Fold
1 ** 280 * 558 **
2 ** 281 ** 559 *
3 *** 282 ** 560 *
457
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
4 * 283 **** 561 ****
5 * 284 **** 562 **
6 285 ***** 563 *****
7 *** 286 **** 564 φ
8 287 ***** 565 ****
9 *** 288 ***** 566 *****
10 ** 289 **** 567 ****
11 *** 290 ***** 568 *****
12 *** 291 ***** 569 *****
13 ** 292 570
14 *** 293 ***** 571
15 *** 294 572 * * * *
16 * 295 **** 573 * * * *
17 * 296 sk φ φ φ 574 **
18 * * * * 297 ***** 575 * * *
19 ** 298 576 *****
20 **** 299 ***** 577 *****
21 * 300 ***** 578 *****
22 *** 301 * 579 *****
23 *** 302 ***** 580 *****
24 *** 303 **** 581 *****
25 * 304 ***** 582 *****
26 ** 305 ***** 583 *****
27 * 306 ***** 584 *****
28 ** 307 **** 585 *****
29 *** 308 ***** 586 *****
30 * * * * 309 587
31 * 310 *** 588 *****
32 * 311 589 * * * *
33 * 312 590 * * * *
34 ** 313 * 591 * * * *
35 =!= 314 592 *****
36 * 315 *** 593 *****
37 * 316 ***** 594 ****
38 * 317 **** 595 ****
458
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
39 * 318 ***** 596 ****
40 * 319 **** 597 ****
41 *** 320 **** 598 *****
42 * 321 *** 599 *****
43 *** 322 **** 600 ****
44 * 323 *** 601 ****
45 ** 324 *** 602 ****
46 *** 325 *** 603 *****
47 *** 326 *** 604 *****
48 * 327 605 *****
49 * 328 *** 606
50 ** 329 607 *****
51 ** 330 ** 608 * * * *
52 * 331 sj« sj< 609 *****
53 =!= 332 =!= 610 *****
54 * 333 611 * * *
55 * 334 ***** 612 *****
56 * 335 ***** 613 *****
57 * 336 ***** 614 *****
58 * 337 ***** 615 ****
59 * 338 ***** 616 *****
60 * 339 ***** 617 *****
61 **** 340 ***** 618 *****
62 ***** 341 ***** 619 *****
63 ** 342 ***** 620 ***
64 ** 343 ***** 621 *****
65 ** 344 ***** 622
66 *** 345 *** 623 *****
67 *** 346 624 *****
68 ** 347 625 **
69 * * * * 348 ** 626 *****
70 =!= 349 627 * * * *
71 350 ***** 628 * * * *
72 *** 351 ***** 629 *****
73 ** 352 **** 630 *****
459
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
74 ***** 353 ** 631 *****
75 ***** 354 **** 632 *****
76 ** 355 **** 633 *****
77 ** 356 **** 634 *****
78 * 357 **** 635 *****
79 **** 358 *** 636 *****
80 * 359 *** 637 *****
81 ** 360 * 638 *****
82 ***** 361 *** 639 *****
83 * 362 *** 640
84 ***** 363 ** 641 *****
85 *** 364 * 642 *****
86 * * * * 365 *** 643 *****
87 * # * * 366 644 *****
88 ** 367 *** 645 *****
89 *** 368 646 *****
90 *** 369 *** 647 *****
91 ** 370 ***** 648 *****
92 ** 371 * * * * 649 *****
93 ** 372 ***** 650 *****
94 *** 373 **** 651 *****
95 **** 374 ***** 652 *****
96 **** 375 **** 653 *****
97 ** 376 *** 654 *****
98 *** 377 **** 655 ****
99 **** 378 **** 656 ****
100 ***** 379 *** 657 *****
101 380 658 *****
102 ***** 381 *** 659 *****
103 *** 382 660 * * * *
104 *** 383 ** 661 *****
105 * * * * 384 ***** 662 *****
106 * * * * 385 ***** 663 *****
107 ** 386 * 664 *****
108 *** 387 ** 665 *****
460
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
109 **** 388 *** 666 *****
110 *** 389 ** 667 *****
111 *** 390 * 668 *****
112 *** 391 * 669 *****
113 *** 392 *** 670 *****
114 *** 393 *** 671 *****
115 **** 394 ** 672 *****
116 *** 395 ** 673 ****
117 **** 396 **** 674 *****
118 ***** 397 ***** 675 *****
119 ***** 398 ***** 676 *****
120 ***** 399 677 *****
121 ***** 400 **** 678 *****
122 401 ?J« ^4 679 *****
123 =!= 402 680 *****
124 ** 403 681 *****
125 *** 404 **** 682 *****
126 ** 405 **** 683 *****
127 *** 406 *** 684 *****
128 *** 407 *** 685 ****
129 *** 408 ** 686 *****
130 *** 409 ***** 687 ****
131 *** 410 ***** 688 ***
132 ***** 411 *** 689 ****
133 **** 412 ***** 690 ****
134 ***** 413 **** 691 *****
135 * * * * 414 ***** 692 *****
136 ***** 415 *** 693
137 ***** 416 *** 694 *****
138 ***** 417 695 *****
139 *** 418 696 *****
140 419 ** 697 *****
141 ***** 420 698 *****
142 *** 421 *** 699 *****
143 ***** 422 *** 700 *****
461
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
144 **** 423 **** 701 *****
145 * 424 ***** 702 *****
146 * 425 ***** 703 *****
147 * 426 ***** 704 ****
148 *** 427 *** 705 *****
149 ** 428 *** 706 *****
150 **** 429 **** 707 *****
151 *** 430 **** 708 *****
152 ***** 431 ***** 709 *****
153 ** 432 ***** 710 *****
154 * 433 *** 711 *****
155 ** 434 ** 712 *****
156 *** 435 *** 713 *****
157 ** 436 ** 714 *****
158 =!= 437 715 *****
159 *** 438 ***** 716 *****
160 *** 439 *** 717 *****
161 *** 440 **** 718 ****
162 **** 441 ***** 719
163 *** 442 ***** 720 *****
164 **** 443 ***** 721 *****
165 ** 444 *** 722 *****
166 ** 445 *** 723 *****
167 *** 446 *** 724 *****
168 * 447 * 725 *****
169 **** 448 ***** 726
170 ***** 449 727 *****
171 ***** 450 ** 728 *****
172 ***** 451 ***** 729 *****
173 ** 452 ***** 730 *****
174 ** 453 ***** 731 *****
175 * * * * 454 ***** 732 * * * *
176 *** 455 ** 733 *****
177 *** 456 734 *****
178 ** 457 ***** 735 ****
462
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
179 ***** 458 **** 736 *****
180 **** 459 *** 737 *****
181 * 460 **** 738 *****
182 **** 461 **** 739 *****
183 ** 462 ***** 740 *****
184 ** 463 ***** 741 *****
185 *** 464 **** 742 *****
186 **** 465 *** 743 *****
187 ** 466 ***** 744 ***
188 ***** 467 ***** 745 *****
189 * * * * 468 746 *****
190 * * * * 469 ***** 747 *****
191 * * * * 470 748 *****
192 ***** 471 ?J« ^4 749 *****
193 ***** 472 ***** 750 *****
194 ***** 473 ***** 751 *****
195 **** 474 **** 752 *****
196 **** 475 *** 753 *****
197 ***** 476 ***** 754 *****
198 **** 477 **** 755 *****
199 **** 478 ***** 756 *****
200 * 479 ** 757 ****
201 *** 480 ***** 758 ***
202 ** 481 **** 759 *****
203 * 482 *** 760 *****
204 **** 483 ** 761 *****
205 ** 484 ***** 762 *****
206 ** 485 ***** 763 *****
207 *** 486 764 * * *
208 487 765 * * * *
209 * * * * 488 766 *****
210 * * * * 489 767 *****
211 490 ***** 768 *****
212 **** 491 **** 769 *****
213 *** 492 **** 770 ****
463
2017204248 22 Jun 2017
Cpd Fold Cpd Fold Cpd Fold
214 **** 493 **** 771 *****
215 *** 494 **** 772 *****
216 *** 495 ***** 773 *****
217 *** 496 ***** 774 *****
218 *** 497 **** 775 ***
219 **** 498 ***** 776 **
220 ** 499 ***** 777 ***
221 ***** 500 ***** 778 *****
222 *** 501 ***** 779 *****
223 *** 502 ***** 780 *****
224 * 5!« * 503 ***** 781 *****
225 504 ***** 782 *****
226 5k 505 783 *****
227 506 784 >k >k >k >k
228 =k=k 507 785 *****
229 *** 508 $*** 786
230 **** 509 **** 787 *****
231 **** 510 ***** 788 *****
232 5k 511 **** 789 *****
233 * 512 ***** 790 *****
234 ***** 513 ***** 791 *****
235 **** 514 ***** 792 *****
236 *** 515 ***** 793 *****
237 *** 516 **** 794 *****
238 ** 517 ***** 795 *****
239 * 518 **** 796 *****
240 519 ***** 797 *k >k *k
241 ***** 520 798 *****
242 * 5|« * * 521 ***** 799 *****
243 * 5|« * * 522 ***** 800 *****
244 * * * * 523 ***** 801 *****
245 =k=k 524 ***** 802 *****
246 5k 525 ***** 803 *****
247 ***** 526 ***** 804 *****
248 **** 527 ***** 805 *****
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Cpd Fold Cpd Fold Cpd Fold
249 * 528 **** 806 *****
250 ***** 529 ***** 807 *****
251 ***** 530 ***** 808 *****
252 **** 531 ***** 809 *****
253 * 532 ***** 810 *****
254 *** 533 ***** 811 *****
255 ** 534 ***** 812 *****
256 **** 535 ***** 813 *****
257 **** 536 **** 814 *****
258 * * * * 537 815 *****
259 * * * * 538 816
260 *** 539 817 *****
261 * * * * 540 *** 818 *****
262 ***** 541 819 *****
263 * * * * 542 ***** 820 *****
264 ***** 543 ***** 821 *****
265 *** 544 **** 822 ****
266 ** 545 ***** 823 **
267 ***** 546 ***** 824 ****
268 ***** 547 ***** 825 *****
269 ***** 548 ***** 826 *****
270 **** 549 ***** 827 *****
271 ***** 550 ***** 828 *****
272 ***** 551 ***** 829 *****
273 ***** 552 **** 830 *****
274 ***** 553 ***** 831 ****
275 ***** 554 ***** 832 *****
276 * 555 *** 833 *****
277 *** 556 *** 834 *****
278 ** 557 * 835 *****
279 **
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2017204248 22 Jun 2017 [001677] Example 8 [001678] Gems count (Smn-dependent nuclear speckle count) assay [001679] The level of Smn protein directly correlates with the amount of nuclear foci, also known as gems, produced upon staining the cell with a fluorescently labeled anti-Smn antibody (Liu and Dreyfuss, EMBO J., 1996, 15:3555). Gems are multi-protein complexes whose formation is nucleated by the Smn protein and the gems count assay is used to evaluate the level of Smn protein in the cell. As described herein, the gems count assay is used to quantify the level of Smn protein in SMA patient fibroblast cells treated with a test compound.
[001680] Materials
Material Source
SMA Type 1 human cells Primary Antibody- mouse antiSMN clone 2B1 Secondary Antibody- anti-mouse Alexa Fluor 555 Bovine Serum Albumin (BSA) 4% Paraformaldehyde Bortezomib 0.05% Triton X-100 Mounting medium- ProLong Gold Antifade Reagent with DAPI 22x22 #1 sterile Cover slips DMEM GM03813 (Coriell Institute) Sigma Catalog No.: S2944 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: A21422 Sigma Catalog No.: A3294 Electron Microscopy Sciences Catalog No.: 15710 LC Labs, Catalog No.: B-1408 Sigma Catalog No.: 93443-lOOmL Life Technologies, Inc. (formerly Invitrogen) Catalog Nos.: P7481 and P36935 Fisher Catalog No.: 12-548-B Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960-044
PBS Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 10010-031
Clear-coat nail polish Zeiss Axovert 135 Fluorescence microscope Revlon brand Catalog No.: 1271-76 Zeiss
[001681] Protocol: Cells are thawed and incubated in DMEM-10% FBS for 72 hours, then trypsinized, counted and resuspended to 100,000 cells/mL in DMEM-10% FBS. The cell suspension (2 mL) is plated in a 6-well cell culture plate with a sterile cover slip and incubated for 3 to 5 hours. Test compounds are serially diluted 3.16-fold in 100% DMSO to generate a 7point dilution curve. 10 pL of test compound solution is added to each cell-containing well and incubated for 48 hours in a cell culture incubator (37°C, 5% CO2, 100% relative humidity).
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2017204248 22 Jun 2017
Duplicates are set up for each test compound concentration. Cells containing DMSO at a final concentration of 0.5% are used as controls.
[001682] Cell culture medium is aspirated from the wells containing cover slips and gently washed three times with cold PBS. The cells are fixed by incubation for 20 minutes at room temperature while in paraformaldehyde. The cells are then washed two times with cold PBS followed by incubation for 5 minutes at room temperature with 0.05% Triton X-100 in PBS to permeabilize the cells. After the fixed cells are washed three times with cold PBS, they are blocked with 10% FBS for 1 hour. 60 pL of primary antibody diluted 1:1000 in blocking buffer is added and the mixture is incubated for one hour at room temperature. The cells are washed three times with PBS and 60 pL of secondary antibody diluted 1:5000 in blocking buffer is added, then the mixture is incubated for one hour at room temperature. The cover slips are mounted onto the slides with the aid of mounting medium and allowed to dry overnight. Nail polish is applied to the sides of the cover slip and the slides are stored, protected from light. A Zeiss Axovert 135 with a 63x Plan-Apochromat, NA=1.4 objective is used for immunofluorescence detection and counting. The number of gems is counted per >150 nuclei and % activation is calculated using DMSO and 10 nM bortezomib as controls. For each test compound, the cells are examined at all wavelengths to identify test compounds with inherent fluorescence.
[001683] Results. As seen in Figure 9, SMA Type 1 patient cells treated with Compound 6 (Figure 9a) and Compound 170 (Figure 9b) contain progressively more gems relative to cells treated with DMSO.
[001684] Example 9 [001685] Smn protein assay in human motor neurons [001686] Smn immuno fluorescent confocal microscopy is used to quantify the level of Smn protein in human motor neurons treated with test compounds.
[001687] Protocol. Human motor neurons derived from SMA iPS cells (Ebert et al., Nature, 2009, 457:2770; and, Rubin et al., BMC Biology, 2011, 9:42) are treated with test compound at various concentrations for 72 hours. The level of Smn protein in the cell nucleus is quantified using Smn immuno staining and confocal fluorescence microscopy essentially as described in Makhortova et al., Nature Chemical Biology, 2011, 7:544. The level of Smn protein in
467
2017204248 22 Jun 2017 compound-treated samples is normalized to that in vehicle-treated samples and plotted as a function of the compound concentration.
[001688] Results. As seen in Figure 10, human motor neurons treated for 72 hours with increasing concentrations of Compound 6 contain progressively more Smn protein in the nucleus.
[001689] Example 10 [001690] Smn protein assay in animal tissues [001691] This Smn protein assay compares tissues from test compound treated mice with those from DMSO vehicle treated mice to determine the increase in levels of Smn protein produced from the human SMN2 gene.
[001692] Materials
Material Source
Tissues from C/C-allele SMA mice Tissues from Δ7 SMA mice Protease inhibitor cocktail Anti-SMN d2 Anti-SMN kryptate SMN reconstitution buffer RIPA Lysis Buffer The Jackson Laboratory, strain No.: 008714 (B6.129^^^^tm5(Smnl/SMN2)Mrph The Jackson Laboratory, strain No.: 005025 (FVB.CgTg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmIMsdH) Roche Applied Science Catalog No.: 11836145001 Blue cap Cisbio Catalog No.: 63IDC002-SMN Red cap Cisbio Catalog No.: 63IDC002-SMN Cisbio Catalog No.: 63IDC002-SMN-Buffer 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP-40, 1% Sodium deoxycholate
Diluent Buffer BCA protein assay Kit White 384 well plate Polypropylene V-bottom plate Clear 96 well polystyrene plate 5 mm Stainless Steel Beads Safe-Lock Tubes 2.0 mL Twin.tec 96-Well Semiskirted PCR Plate TissueLyzer II Envision Plate Reader 20 mM Tris-HCl pH 7.5, 150 mM NaCl Pierce Catalog No.: 23225 Nunc Catalog No.: 351190 Falcon Catalog No.: 165195 Nunc Catalog No.: 442404 Qiagen Catalog No.: 69989 Eppendorf Catalog No.: 022363352 Eppendorf Catalog No.: 951020389 Qiagen Catalog No.: 85300 Perkin Elmer Model No.: 2103
468
2017204248 22 Jun 2017 [001693] Protocol. The tissue samples in Safe-Lock tubes are weighed and the volume of R1PA buffer containing the protease inhibitor cocktail is added based on the weight to volume ratios for each type of tissue: Brain (50 mg/mL), Muscle (50 mg/mL) and Spinal Cord (25 mg/mL).
[001694] Tissues are homogenized using the TissueLyzer by bead milling. 5 mm stainless steel beads are added to the sample and shaken vigorously for 5 minutes at 30 Hz in the TissueLyzer. The samples are then centrifuged for 20 minutes at 14,000 x g in a microcentrifuge and the homogenates transferred to the PCR plate. The homogenates are diluted in RIPA buffer to approximately 1 mg/mL for HTRF and approximately 0.5 mg/mL for total protein measurement using the BCA protein assay. For the SMN HTRF assay, 35 pL of the tissue homogenate is transferred to a 384-well plate containing 5 pL of the antibody solution (1:100 dilution of each of the anti-SMNd2 and anti-SMN Kryptate in reconstitution buffer). To provide a control signal, three (3) wells in the plate contain only RIPA Lysis Buffer and, thus, serve as Blank control wells. The plate is centrifuged for 1 minute to bring the solution to the bottom of the wells and then incubated overnight at room temperature. Fluorescence for each well of the plate at 665 nm and 620 nm is measured on an EnVision multilabel plate reader (Perkin-Elmer). The total protein in the tissue homogenate is measured using the BCA assay according to the manufacturer’s protocol.
[001695] The normalized fluorescence signal is calculated for each sample, Blank and vehicle control well by dividing the signal at 665 nm by the signal at 620 nm. Normalizing the signal accounts for possible fluorescence quenching due to the matrix effect of the tissue homogenate. The AF value (a measurement of Smn protein abundance as a percent value) for each tissue sample well is calculated by subtracting the normalized average fluorescence for the Blank control wells from the normalized fluorescence for each tissue sample well, then dividing this difference by the normalized average fluorescence for the Blank control wells and multiplying the resulting value by 100. The AF value for each tissue sample well is divided by the total protein quantity (determined using the BCA assay) for that tissue sample. The change in Smn protein abundance for each tissue sample relative to the vehicle control is calculated as the percent difference in the AF value of the tissue sample in the presence of the test compound and the averaged AF value of the vehicle control signal divided by the averaged AF value of the vehicle control signal.
469
2017204248 22 Jun 2017 [001696] Example 11 [001697] Smn protein assay in tissues of adult C/C-allele SMA mice [001698] The tissues for use in the assay for Smn protein in adult C/C-allele SMA mice are prepared as described in Example 10. The assay assesses whether treatment of C/C-allele SMA mice with a test compound for 10 days increases levels of Smn protein produced from the SMN2 gene.
[001699] Materials
Material Source
Tissues from C/C-allele SMA mice The Jackson Laboratory, strain No.: 008714 (B6.129-Srnnltm5(Smnl/SMN2)Mrph/J) [001700] Protocol. C/C-allele SMA mice are dosed BID orally (in 0.5% hydroxypropylmethyl cellulose (HPMC) with 0.1% Tween-80) with a test compound or vehicle at 10 mg/kg for 10 days. Age-matched heterozygous mice are dosed with vehicle for use as a control. Tissues are collected for analysis of protein levels according to Example 10.
[001701] Results. As seen in Figure 11, total protein-normalized Smn level was increased in brain, spinal cord, and muscle tissues of adult C/C-allele SMA mice treated at 100 mg/kg BID for 10 days with Compound 6 (Figure 1 la) or treated at 10 mg/kg BID for 10 days with Compound 170 (Figure lib) relative to the vehicle group.
[001702] Example 12 [001703] Smn protein in tissues of neonatal Δ7 SMA mice [001704] The assay for Smn protein in neonatal SMA mice tissues is used to determine whether treatment with a test compound increases Smn protein levels produced from the SMN2 gene.
[001705] Materials
Material Source
Tissues from Δ7 SMA The Jackson Laboratory, strain No.: 005025 (FVB.Cgmice Tg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb Smnltm!Msdlf [001706] Protocol. SMA Δ7 homozygous knockout mice are dosed once a day (QD) intraperitoneally (IP) with a test compound or vehicle (100% DMSO) from postnatal day (PND) 3 to PND 9. Tissues are collected for analysis of protein levels according to Example 10.
[001707] Results. As seen in Figure 12, total protein normalized Smn level was dose dependently increased in brain, spinal cord, muscle, and skin tissues of neonatal SMA Δ7
470
2017204248 22 Jun 2017 homozygous knockout mice treated with Compound 6 (Figures 12a, 12b, 12c and 12d, respectively) and in brain, spinal cord, and muscle of neonatal SMA Δ7 homozygous knockout mice treated with Compound 170 (Figures 12e, 12f and 12g respectively).
[001708] Example 13 [001709] Body weight of neonatal Δ7 SMA mice [001710] The change in body weight of neonatal SMA mice is used to determine whether treatment with a test compound improves body weight.
[001711] Materials
Material Source
Tissues from The Jackson Laboratory, strain No.: 005025 (FVB.CgΔΕχοη7 SMA mice Tg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmIMsd/Y) [001712] Protocol. SMA Δ7 homozygous knockout mice are dosed intraperitoneally (IP) with test compound or vehicle (100% DMSO) QD from PND 3 until the dose regimen is switched to an oral dose BID in 0.5% hydroxypropylmethyl cellulose (HPMC) with 0.1% Tween-80 at a dose 3.16-fold higher than the dose used for IP. Body weights of SMA Δ7 mice treated with test compound or vehicle and age matched heterozygous mice are recorded every day.
[001713] Results. As seen in Figure 13, body weight of neonatal SMA Δ7 homozygous knockout mice treated with Compound 6, dosed IP QD from PND 3 to PND 30, then orally BID from PND 31 until study end (Figure 13a) and Compound 170, dosed IP QD from PND 3 to PND 23, then orally BID from PND 24 until study end (Figure 13b), improved compared to vehicle treated mice.
[001714] Example 14 [001715] Righting reflex in neonatal Δ7 SMA mice [001716] The functional change in righting reflex of neonatal SMA mice is used to determine whether treatment with a test compound improves righting reflex.
[001717] Materials
Material Source
Tissues from The Jackson Laboratory, strain No.: 005025 (FVB.CgΔΕχοη7 SMA mice Tg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmlMsd/J) [001718] Protocol. SMA Δ7 homozygous knockout mice are dosed intraperitoneally (IP) with test compound or vehicle (100% DMSO) QD from PND 3 until the dose regimen is switched to
471
2017204248 22 Jun 2017 an oral dose BID in 0.5% hydroxypropylmethyl cellulose (HPMC) with 0.1% Tween-80 at a dose 3.16-fold higher than the dose used for IP. The righting reflex time is measured as the time taken by a mouse to flip over onto its feet after being laid on its back. Righting reflex is measured five times for each mouse (allowing a maximal time of 30 sec for each try) with 5 minutes between each measurement. The righting reflex time for SMA Δ7 homozygous knockout mice treated with test compound or vehicle and age-matched heterozygous mice is measured on PND 10, 14 and 18 and plotted.
[001719] Results. As seen in Figure 14, the righting reflex of neonatal SMA Δ7 homozygous knockout mice treated with Compound 6 (Figure 14a) and Compound 170 (Figure 14b) dosed IP QD from PND 3 improved compared to vehicle treated mice. The righting time of the compound treated neonatal SMA Δ7 homozygous knockout mice was similar to that of the age matched heterozygous mice on PND 18.
[001720] Example 15 [001721] Survival of neonatal Δ7 SMA mice [001722] The change in the number of surviving mice over time is used to determine whether treatment with a test compound improves survival.
[001723] Materials
Material Source
Tissues from Δ7 SMA mice The Jackson Laboratory, strain No.: 005025 (FVB.CgTg(SMN2*delta7)4299Ahmb Tg(SMN2)89Ahmb SmnltmIMsd/J) [001724] Protocol. SMA Δ7 homozygous knockout mice are dosed intraperitoneally (IP) with test compound or vehicle (100% DMSO) QD from PND 3 until the dose regimen is switched to an oral dose BID in 0.5% hydroxypropylmethyl cellulose (HPMC) with 0.1% Tween-80 at a dose 3.16-fold higher than the dose used for IP and later switched to an oral dose QD in 0.5% hydroxypropylmethyl cellulose (HPMC) with 0.1% Tween-80 at a dose 6.32-fold higher than the dose used for IP. The number of surviving mice in each group is recorded every day and plotted as a percent of total number of mice. Tissues of SMA Δ7 and age-matched heterozygous mice are collected for the measurement of Smn protein levels and processed as detailed in Example 10. The total protein normalized Smn protein levels measured in the tissues are plotted as a percent of those in the age-matched heterozygous mice tissues, with the Smn level in heterozygous mice set to 100 percent. The level of Smn protein in the test compound treated
472
2017204248 22 Jun 2017 mice tissue relative to that in heterozygous mice tissue is indicated as a percent value above each bar in the graph.
[001725] Results. As seen in Figure 15, survival of neonatal SMA Δ7 homozygous knockout mice treated with Compound 6 (Figure 15a), dosed IP QD from PND 3 to PND 30, then orally BID from PND 31 until study end, and Compound 170 (Figure 15b), dosed IP QD from PND 3 to PND 23, then orally BID from PND 24 until study end, improved compared to vehicle treated mice. As seen in Figure 16, Smn protein levels in brain, spinal cord, and muscle tissues of SMA Δ7 homozygous knockout mice after treatment with Compound 6 dosed IP 10 mg/kg QD from PND 3 to PND 30, then orally 30 mg/kg BID from PND 31 to PND 156 (Figure 16a) and Compound 170 dosed IP 3 mg/kg QD from PND 3 to PND 23, then orally 10 mg/kg BID from PND 24 to PND 88, orally 20 mg/kg QD from PND 89 to PND185 (Figure 16b) was measured and plotted relative to vehicle treated and age-matched heterozygous mice.
[001726] Example 16 [001727] Human SMN1 minigene mRNA end-point semi-quantitative RT-PCR splicing assay in cultured cells [001728] The RT-PCR assay is used to visualize and quantify the levels of the human SMN1 minigene foil length and Δ7 mRNA in primary cells and cell lines expressing the human SMN1 minigene construct treated with a test compound.
[001729] Materials
Material Source
HEK293H cells Cells-To-Ct lysis buffer ATCC Catalog No.: CRL-1573 Life Technologies, Inc. (formerly Applied Biosystems) Catalog No.: 4399002
FuGENE-6 lipid transfection reagent DMEM Roche Applied Science, Catalog No.: 11 814 443 001 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11960-044
96-well flat-bottom plates Platinum Taq HiFi DNA Polymerase Super Mix iScript RT enzyme Kit Ethidium bromide 2% agarose E gels 48-Well Double Comb Gel Documentation System Becton Dickinson Catalog No.: 353072 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: 11304-016 BioRad Catalog No.: 170-8890 Life Technologies, Inc. (formerly Invitrogen) Catalog No.: G8008-02 UVP Gel Doc It 310 Imaging system
473
2017204248 22 Jun 2017 [001730] SMN1 Minigene Construct [001731] Preparation of the Minigene Constructs [001732] Using the procedure for the preparation of the SMN2 minigene construct described in Biological Example 1, the SMN1 version of the minigene is generated by replacing the sixth nucleotide of exon 7 (a thymine residue) of the SMN2-A minigene construct to cytosine using site-directed mutagenesis. Thus, similar to the SMN2-A minigene construct, the SMN1 minigene construct has a single adenine residue inserted after nucleic residue 48 of exon 7. The SMN 1 minigene construct is referred to as SMN 1 -A.
[001733] Protocol. HEK293H cells (10,000 cells/well/199 pL) were transfected, using FuGENE-6 reagent, in a 96-well plate with 15 ng of the SMN1-A minigene reporter plasmid per well. Cells were incubated for 24 hours following transfection. Test compounds were serially diluted 3.16-fold in 100% DMSO to generate a 7-point concentration curve. A solution of test compound (1 pL, 200x in DMSO) was added to each test well. 1 pL DMSO was added to each control well. The plate was incubated for 7 hours in a cell culture incubator (37°C, 5% CO2, 100% relative humidity). The cells were then lysed in Cells-To-Ct lysis buffer and the lysates were stored at ~80°C.
[001734] Two SMN spliced mRNA are generated from the SMN1 minigene. The term SMN1 minigene FL refers to the first spliced product containing exon 7, corresponding to full length SMN1 mRNA. The term SMN1 minigene Δ7 refers to the second product lacking exon 7. [001735] SMN minigene FL and Δ7 mRNA are amplified using the primers in Table 11. Primer SMN Forward C (SEQ ID NO. 11) hybridizes to a nucleotide sequence in exon 6 (nucleotide 43 to nucleotide 63), primer SMN Reverse A (SEQ ID NO. 2) hybridizes to a nucleotide sequence in the coding sequence of Firefly luciferase. The combination of these two oligonucleotides detects only SMN1 or SMN2 minigenes (RT-PCR) and will not detect endogenous SMN1 or SMN2 genes. Since the HEK293H cells used in Example 16 were transfected with only the human SMN 1 minigcnc, RT-PCR can visualize and quantify only SMN1 minigene full-length and SMN1 minigene Δ7 mRNA.
[001736] Table 11
Primer Sequence Source
SMN Forward C SEQ ID NO. 11: GATGCTGATGCTTTGGGAAGT PTC1
SMN Reverse A SEQ ID NO.2: CGCTTCACATTCCAGATCTGTC PTC1
474
2017204248 22 Jun 2017 [001737] 1 Primers designed by PTC Therapeutics, Inc.
[001738] To synthesize cDNA, 5 pL of lysate, 4 pL of 5x iScript reaction mix, 1 pL of reverse transcriptase, and 10 pL of water are combined and incubated 5 min at 25°C followed by 30 min at 42°C, followed by 5 min at 85°C. The cDNA solution is stored at -20°C.
[001739] To perform endpoint PCR, 5 pL of cDNA, 0.2 pL of 100 pM forward primer, 0.2 pL of 100 pM reverse primer, and 22.5 pL of polymerase super mix are combined in a 96 well semiskirted PCR plate. PCR is carried out at the following temperatures for the indicated time: Step 1: 94°C (2 min), Step 2: 94°C (30 sec), Step 3: 55°C (30 sec), Step 4: 68°C (1 min), then repeat Steps 2 to 4 for a total of 33 cycles, then hold at 4°C.
[001740] 10 pL of each PCR sample is electrophoretically separated on a 2% agarose E-gel for minutes stained with dsDNA staining reagents (e.g., ethidium bromide) and visualized using a gel imager.
[001741] Results. As seen in Figure 17, cells treated with increasing concentrations of Compound 6 (Figure 17a) and Compound 170 (Figure 17b) contain progressively more SMN1 minigene FL mRNA and less SMN1 minigene Δ7 mRNA, indicating a correction of SMN1 alternative splicing.
[001742] Without regard to whether a document cited herein was specifically and individually indicated as being incorporated by reference, all documents referred to herein are incorporated by reference into the present application for any and all purposes to the same extent as if each individual reference was fully set forth herein.
[001743] Although certain embodiments have been described in detail above, those having ordinary skill in the art will clearly understand that many modifications arc possible in the embodiments without departing from the teachings thereof. All such modifications are intended to be encompassed within the claims as described herein.

Claims (17)

  1. Claims
    1. A compound of Formula (Hal):
    or a form thereof, wherein:
    Ri is heterocyclyl;
    wherein, heterocyclyl is optionally substituted with one, two or three R3 substituents and optionally, with one additional R4 substituent; or, wherein, heterocyclyl is optionally substituted with one, two, three or four R3 substituents:
    R2 is aryl;
    wherein, aryl is optionally substituted with one, two or three Re substituents and optionally, with one additional R7 substituent;
    Ra is, in each instance, independently selected from hydrogen, halogen or Ci-salkyl;
    Rb is hydrogen, halogen, Ci-salkyl or Ci-salkoxy;
    Rc is hydrogen, halogen or Ci-sal kyl;
    R3 is, in each instance, independently selected from cyano, halogen, hydroxy, oxo, Ci-salkyl, halo-Ci-salkyl, Ci-salkyl-carbonyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-salkoxy-Ci-salkyl, Ci-salkoxy-carbonyl, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino, amino-C'i-salkyl, Ci-salkyl-amino-C'i-salkyl, (Ci-8alkyl)2-amino-Ci-8alkyl, amino-Ci-salkyl-amino, Ci-salkyl-amino-Ci-salkyl-amino, (Ci-8alkyl-amino-Ci-8alkyl)2-amino, (C1 -salkyl)2-amino-C 1 -salkyl-amino, [(C1 -salkyl)2-amino-C 1 -salkyl]2-amino, (C i-8alkyl-amino-C 1 -salkyl )(C 1 -salkyl)ami no, [(C1 -8alkyl)2-amino-C 1 -salkyl](C1 -salkyl )amino, C1 -salkoxy-C 1 -salkyl-amino, (Ci-8alkoxy-Ci-8alkyl)2-amino, (Ci-8alkoxy-Ci-8alkyl)(Ci-8alkyl)amino,
    476
    2017204248 06 Dec 2018
    Ci-salkyl-carbonyl-amino, C1 -salkoxy-carbonyl-amino, hydroxy-C 1 -salkyl, hydroxy-C ι-salkoxy-Ci-salkyl, hydroxy-Ci-salkyl-amino, (hydroxy-Ci-8alkyl)2-amino or (hydroxy-Ci-8alkyl)(Ci-8alkyl)amino;
    R4 is C3-i4cycloalkyl, C3-i4cycloalkyl-Ci-salkyl, C3-i4cycloalkyl-amino, aryl-Ci-salkyl, aryl-Ci-salkoxy-carbonyl, aryl-sulfonyloxy-Ci-salkyl, heterocyclyl or heterocyclyl-Ci-salkyl; wherein, each instance of C3-i4cycloalkyl, aryl and heterocyclyl is optionally substituted with one, two or three Rs substituents;
    Rs is, in each instance, independently selected from halogen, hydroxy, cyano, nitro, Ci-salkyl, halo-Ci-salkyl, Ci-salkoxy, halo-Ci-salkoxy, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino or Ci-salkyl-thio;
    Re is, in each instance, independently selected from halogen, hydroxy, cyano, nitro, Ci-salkyl, C2-8alkenyl, halo-Ci-salkyl, hydroxy-C 1 -salkyl, Ci-salkoxy, halo-Ci-salkoxy, Ci-salkoxy-Ci-salkyl, amino, Ci-salkyl-amino, (Ci-8alkyl)2-amino or Ci-salkyl-thio; and,
    R7 is C3-i4cycloalkyl, C3-i4cycloalkyl-oxy, aryl, heterocyclyl or heteroaryl.
  2. 2. The compound of claim 1, wherein Ri is heterocyclyl selected from azetidinyl, tetrahydro furanyl, pyrrolidinyl, pipcridinyl, pipcrazinyl, 1,4-diazcpanyl,
    1,2,5,6-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl, hexahydrop yrro lo[3,4-b]pyrrol-( 1 H)-yl, (3 aS ,6aS)-hexahydropyrrolo [3,4-b]pyrrol-( 1 H)-yl, (3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-(lH)-yl, hexahydropyrrolo[3,4-b]pyrrol-(2H)-yl, (3aS,6aS)-hexahydropyrrolo[3,4-b]pyrrol-(2H)-yl, hexahydrop yrro lo[3,4-c]pyrrol-( 1 H)-yl, (3aR,6aS)-hexahydropyrrolo[3,4-c]pyrrol-(lH)-yl, octahydro-5H-pyrrolo[3,2-c]pyridinyl, octahydro-6H-pyrrolo[3,4-b]pyridinyl, (4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridinyl, (4aS ,7aS)-octahydro-6H-pyrrolo [3,4-b]pyridinyl, hexahydropyrrolo[ 1,2-a]pyrazin-(2H)-one, hexahydropyrrolo [ 1,2-a]pyrazin-( 1 H)-yl, (7R,8aS)-hexahydropyrrolo[l,2-a]pyrazin-(lH)-yl, (8aS)-hexahydropyrrolo[l,2-a]pyrazin-(lH)-yl,
    477
    2017204248 06 Dec 2018 (8aR)-hexahydropyrrolo [ 1,2-a]pyrazin-( 1 H)-yl, (8aS)-octahydropyrrolo[l,2-a]pyrazin-(lH)-yl, (8aR)-octahydropyrrolo[l,2-a]pyrazin-(lH)-yl, octahydro-2H-pyrido[l,2-a]pyrazinyl, 3-azabicyclo[3.1.0]hexyl, (lR,5S)-3-azabicyclo[3.1.0]hexyl, 8-azabicyclo[3.2.1]octyl, (lR,5S)-8-azabicyclo[3.2.1]octyl, 8-azabicyclo[3.2.l]oct-2-enyl, (1 R,5 S)-8-azabicyclo[3.2.1 ] oct-2-enyl, 9-azabicyclo [3.3.1 ]nonyl, (lR,5S)-9-azabicyclo[3.3. l]nonyl, 2,5-diazabicyclo[2.2.1 ]heptyl, (lS,4S)-2,5-diazabicyclo[2.2.1]heptyl, 2,5-diazabicyclo[2.2.2]octyl,
  3. 3.8- diazabicyclo[3.2.1 ]octyl, (1 R,5S)-3,8-diazabicyclo[3.2.1 Joctyl, l,4-diazabicyclo[3.2.2]nonyl, azaspiro[3.3]heptyl, 2,6-diazaspiro[3.3]heptyl, 2,7diazaspiro[3.5]nonyl, 5,8-diazaspiro[3.5]nonyl, 2,7-diazaspiro[4.4]nonyl and
    6.9- diazaspiro[4.5]decyl; wherein, each instance of heterocyclyl is optionally substituted one, two or three R3 substituents and optionally, with one additional R4 substituent.
    3. The compound of claim 1 of claim 2, wherein the form is selected from a free acid, free base, salt, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
  4. 4. The compound of claim 3, wherein the salt form is a chloride, hydrobromide, hydrochloride, dihydrochloride, acetate, trifluoroacetate or trifluoroacetic acid salt.
  5. 5. A method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising contacting a human cell with the compound of any one of the preceding claims.
  6. 6. The method of claim 5, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
  7. 7. A method for increasing the amount of Smn protein, comprising contacting a human cell with the compound of any one of claims 1-4.
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  8. 8. The method of claim 7, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
  9. 9. The compound of claim 1, wherein the compound is selected from the group consisting of:
    2-(4-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l ,2-a]pyrimidin-4-one, 2-(4-mcthoxyphcnyl)-7-(4-mcthylpipcrazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-onc, 2-(4-methoxyphenyl)-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one, 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-(1,4-diazepan-1 -yl)-2-(4-methoxyphenyl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(3,3-dimethylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(4-ethylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-( 1,4-diazepan-1 -yl)-2-(3,4-dimethoxyphenyl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(4-methyl-l,4-diazepan-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(4-methoxyphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(4-methylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-7-(4-propylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(4-methoxyphenyl)-7-(4-methyl-1,4-diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one,
    7-(3,3 -dimethylpiperazin-1 -yl)-2-(4-methoxyphenyl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3 -methoxyphenyl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-(3-methoxyphenyl)-7-(4-methylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -methoxyphenyl)-7-[(3R)-3 -methyip iperazin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one, 7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-2-(3-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one, 7-(4-ethylpiperazin-l-yl)-2-(3-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-(1,4-diazepan-1 -yl)-2-(3-methoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one, 2-(3-methoxyphenyl)-7-(4-methyl-1,4-diazepan-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
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    2-phenyl-7-(p iperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one,
    7-[(3 S)-3-methylpiperazin-1 -yl] -2-phenyl-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-fluoro-7-(4-methylpiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -chlorophenyl)-7 -(piperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one,
    2-(4-chlorophenyl)-7 -(piperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one,
    7-(piperazin-1 -yl)-2- [3 -(trifluoromethyl)phenyl] -4H-pyrido[ 1,2-a]pyrimidin-4-one, 7-(piperazin-l-yl)-2-[4-(trifluoromethyl)phenyl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -methylphenyl)-7-(piperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one, 2-(4-fluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(4-nitrophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-[4-(dimethylamino)phenyl]-9-fluoro-7-(piperazin-l-yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one, 2-[4-(dimethylamino)phenyl] -9-fluoro-7- [(3R)-3-methylpiperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one, 2-(2-fluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-[4-(dimethylamino)phenyl]-7-(piperazin-l-yl)-4H-p yrido [l,2-a]pyrimidin-4-one, 2-[4-(dimethylamino)phenyl]-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(3,4-dimethylphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethylphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-[3 -(dimethylamino)phenyl] -7-(piperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one,
    2-[3-(dimethylamino)phenyl]-7-[(3 S)-3-methyip iperazin-1-yl]-4H-p yrido [ 1,2-a]pyrimidin-4-one, 2-[4-(difluoromethoxy)phenyl]-7-(p iperazin-l-yl)-4H-p yrido [l,2-a]pyrimidin-4-one, 2-[4-(difluoromethoxy)phenyl] -7- [(3 S)-3 -methyip iperazin-1 -yl] -4H-p yrido [ 1,2-a]pyrimidin-4one,
    2-(3-fluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -nitrophenyl)-7-(p iperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one, 2-(4-methylphenyl)-7-(piperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one, 2-(2-fluoro-4,5-dimethoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(2-fluoro-4,5-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin4-one,
    7-(3,8-diazabicyclo [3.2.1 ] oct-3 -yl)-2-(3,4-dimethoxyphenyl)-4H-pyrido[ 1,2-a]pyrimidin-4-one, 2-[4-methoxy-3 -(trifluoromethyl)phenyl] -7-(p iperazin-1 -yl)-4H-p yrido [ 1,2-a]pyrimidin-4-one,
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    2-[4-methoxy-3 -(trifluoromethyl)phenyl] -7-[(3R)-3 -methyip iperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one,
    2-[4-methoxy-3-(trifluoromethyl)phenyl]-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methoxy-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,5-difluoro-4-hydroxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 4-[4-oxo-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-2-yl]benzonitrile 2-[3-fluoro-5-(trifluoromethyl)phenyl]-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-[4-fluoro-3-(trifluoromethyl)phenyl]-7-(piperazin-l -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one, 2-[2-methoxy-3 -(trifluoromethyl)phenyl] -7-(p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-(3,5-difluorophenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-(piperazin-1 -yl)-2- [3 -(trifluoromethoxy)phenyl] -4H-pyrido[ 1,2-a]pyrimidin-4-one, 2-[4-methoxy-3-(trifluoromethoxy)phenyl]-7-(p iperazin- l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-[4-hydroxy-3-(trifluoro me thoxy)phenyl]-7-(piperazin-1-yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-[4-methoxy-3-(trifluoromethoxy)phenyl]-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-[4-hydroxy-3-(trifluoromethoxy)phenyl]-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3 -fluoro-4-methoxyphenyl)-7 - [(3 S)-3 -methyip iperazin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(2,4-dimethoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(2,4-dimethoxyphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-[3 -(difluoromethoxy)-4-methoxyphenyl] -7-(p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-[3-(difluoromethoxy)-4-hydroxyphenyl]-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-[3 -(difluoromethoxy)-4-methoxyphenyl] -7- [(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one,
    2 - [ 3 -(difluoromethoxy)-4-hydroxyphenyl] -7-[(3 S)-3-methylpiperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one,
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    2-(3,5 -difluorophenyl)-7-[(3 S)-3-methylpiperazin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3-chloro-4-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -chloro-4-methoxyphenyl)-7-[(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(3-ethoxy-4-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -ethoxy-4-methoxyphenyl)-7 - [(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-7-[(3aR,6aS)-hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    7-(4-aminopiperidin-l-yl)-2-(3,4-dimethoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3-fluoro-5-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -fluoro-5 -methoxyphenyl)-7 - [(3 S)-3 -methyip iperazin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3 S)-3 -methylpiperazin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin4-one,
    2-(3,4-dimethoxyphenyl)-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(3-fhioro-4,5-dimethoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(4-hydroxypiperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3S)-3-(dimethylamino)pyrrolidin-l-yl]-4H-pyrido[l,2-a]pyrimidin4-one,
    2-(3,4-dimethoxyphenyl)-7- [4-(dimethylamino)piperidin-1 -yl] -4H-pyrido [ 1,2-a]pyrimidin-4one,
    2- (4-methoxy-3 -methylphenyl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    3- [4-oxo-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-2-yl]benzonitrile
    2-methoxy-5-[4-oxo-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-2-yl]benzonitrile
    2-(3-fluoro-4-hydroxyphenyl)-7-(p iperazin-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one,
    2-(4-ethoxy-3 -fluorophenyl)-7-(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-[3-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3-fluoro-4-methylphenyl)-7-(p iperazin- l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
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    2-(3-fluoro-4-methylphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-[(3S)-3-aminopyrrolidin-l-yl]-2-(3,4-dimethoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l-methylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7- [(3 S)-3 -(propan-2-ylamino)pyrrolidin-1 -yl] -4H-pyrido [ 1,2a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-(4-methyl-1,4-diazepan-l -yl)-4H-pyrido[ 1,2-a]pyrimidin-4one,
    2-(4-methoxy-3-nitrophenyl)-7-(piperazin-1 -yl)-4H-pyrido[ 1,2-a]pyrimidin-4-one,
    2-[3 -fluoro-4-(methylsulfanyl)phenyl] -7-(piperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,5-difluoro-4-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,5-difluoro-4-methoxyphenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-
    4-one,
    7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-7-(l-methyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3-chloro-5-fluorophenyl)-7-[(3S)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3-chloro-5-fluorophenyl)-7-(piperazin-l-yr)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(3-fluoro-4-methoxyphenyl)-7-(l -methyl-1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    7-[(3 S)-3-(dimethylamino)pyrrolidin-1 -yl] -2-(3 -fluoro-4-methoxyphenyl)-4H-pyrido [1,2a]pyrimidin-4-one,
    7-[(3R,4R)-3-(dimethylamino)-4-hydroxypyrrolidin-l-yl]-2-(3-fluoro-4-methoxyphenyl)-4Hpyrido[l ,2-a]pyrimidin-4-one,
    7-(4-aminopiperidin-1 -yl)-2-(3 -fluoro-4-methoxyphenyl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[4-(methylamino)piperidin-1 -yl]-4H-pyrido[ 1,2-a]pyrimidin-4one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-4H483
    2017204248 06 Dec 2018 pyrido[l ,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5-methylhexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[l-(2-hydroxyethyl)piperidin-4-yl]-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(4-fluoro-3 -methoxyphenyl)-7 - [(3 S)-3 -methyip iperazin-1 -yl]-4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(4-fluoro-3-methoxyphenyl)-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-difluoro-5-methoxyphenyl)-7-[(3S)-3-methylpiperaz in-l-yl]-4H-pyrido[l, 2-a]pyrimidin4-one,
    2-(3,4-difluoro-5 -methoxyphenyl)-7-(p iperazin-1 -yl)-4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3 -fluoro-4-methoxyphenyl)-7 - [(3 S)-3 -(methylamino)pyrro lidin-1 -yl] -4H-pyrido[ 1,2a]pyrimidin-4-one,
    2- (3-fluoro-4-methoxyphenyl)-7- {4-[(methylamino)methyl]piperidin-l -yl} -4H-pyrido[ 1,2a]pyrimidin-4-one,
    7-[(3S)-3-aminopyrrolidin-l-yl]-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[l,2-a]pyrimidin-4one,
    7 - {4- [(dimethylamino)methyl]piperidin-1 -yl} -2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    3- fluoro-5-{7-[(3S)-3-methylpiperazin-l-yl]-4-oxo-4H-pyrido[l,2-a]pyrimidin-2-yl}benzonitrile
    3 -fluoro-5-[4-oxo-7-(p iperazin- l-yl)-4H-pyrido[l,2-a]pyrimidin-2-yl]benzonitrile
    2-(3 -fluoro-4-methoxyphenyl)-7 - [(3 'S,4'S)-4'-hydroxy-1,3 '-bipyrrolidin-1 '-yl]-4H-pyrido [1,2a]pyrimidin-4-one,
    7-(1,4-diazepan-1 -yl)-2-(3,4-dimethoxyphenyl)-9-methyl-4H-pyrido[ 1,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aR)-l-methylhexahydropyrrolo[3,4-b]pyrrol-5(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-(l, 2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[l-(2-hydroxyethyl)-l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-(piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
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    2-(3,4-dimethoxyphenyl)-9-methyl-7-(l-metliyl-l,2,3,6-tetraliydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-( 1 -methylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-7-[(3aR,6aS)-hexahydropyrrolo[3,4-c]pyrrol-2(lH)-yl]-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3aR,6aS)-5-methylhexahydropyrrolo[3,4-c]pyrrol-2(lH)yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[4-(dimethylamino)piperidin-l-yl]-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one,
    7-[( 1 R,5 S)-8-azabicyclo [3.2.1 ]oct-2-en-3 -yl] -2-(3,4-dimethoxyphenyl)-4H-pyrido [1,2a]pyrimidin-4-one, 2-(3,4-dimethoxyphenyl)-7-(l,2,5,6-tetrahydropyridin-3-yl)-4H-pyrido[l,2-a]pyrimidin-4-one, 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5-(2-liydroxyethyl)hexahydropyrrolo[3,4-c]pyrrol2(1 H)-yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-(3-fluoro-4-methoxyphenyl)-7-[(3aS,6aS)-l-methylhexahydropyrrolo[3,4-b]pyrrol-5(lH)-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one, 2-(3-fluoro-4-methoxyphenyl)-7-[(3aR,6aS)-5-(propan-2-yl)hexahydropyrrolo[3,4-c]pyrrol2(1 H)-yl] -4H-pyrido [ 1,2-a]pyrimidin-4-one,
    7-[(3R)-3-(dimethylamino)pyrrolidin-l -yl]-2-(3-fluoro-4-methoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4Hpyrido[l ,2-a]pyrimidin-4-one,
    7-[(3 aR,6aS)-5 -ethylhexahydropyrrolo [3,4-c]pyrrol-2( 1 H)-yl] -2-(3 -fluoro-4-methoxyphenyl)4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-( 1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-[(4aR,7aR)-l-methyloctahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]4H-pyrido [ 1,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-
    4-one,
    485
    2017204248 06 Dec 2018
    2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-( 1-methyl-1,2,3,6-tetrahydropyridin-4-yl)-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(lR,5S)-8-methyl-8-azabicyclo[3.2.1]oct-3-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(2R)-2-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3 -fluoro-4-methoxyphenyl)-9-methyl-7 - [(3 S)-3 -methyip iperazin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one,
    7-[4-(dimethylamino)piperidin-l-yl]-2-(3-fluoro-4-methoxyphenyl)-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-9-methyl-7-( 1-methylpiperidin-4-yl)-4H-pyrido [ 1,2-a]pyrimidin4-one,
    7-[4-(cyclopropylamino)piperidin-1 -yl] -2-(3,4-dimethoxyphenyl)-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3R,5S)-3,5-dimethylpiperazin-l-yl]-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(3R)-3,4-dimethylpiperazin-l-yl]-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-(4-methylpiperazin-l -yl)-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-7-[4-(dimethylamino)piperidin-l-yl]-9-ethyl-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[l-(2-hydroxyethyl)-l,2,3,6-tetrahydropyridin-4-yl]-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrimido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[4-(methylamino)piperidin-l-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[4-(ethylamino)piperidin-l-yl]-9-methyl-4H-pyrido[l,2-a]pyrimidin4-one,
    2-(3,4-dimethoxyphenyl)-8-methyl-7-(piperazin-l-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[4-(propan-2-ylamino)piperidin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4one,
    486
    2017204248 06 Dec 2018
    7-(1 -cyclobutyl-1,2,3,6-tetrahydropyridin-4-yl)-2-(3,4-dimethoxyphenyl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[l-(propan-2-yl)-l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[l-(oxetan-3-yl)-l,2,3,6-tetrahydropyridin-4-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l-propyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2-a]pyrimidin4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-(l-propyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    7-(l-cyclobutyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(3,4-dimethoxyphenyl)-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[l-(oxetan-3-yl)-1,2,3,6-tetrahydropyridin-4-yl]-4Hpyridofl ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[l-(propan-2-yl)-l,2,3,6-tetrahydropyridin-4-yl]-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l-ethyl-l,2,3,6-tetrahydropyridin-4-yl)-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-8-methyl-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    7-(l-cyclopropyl-l,2,3,6-tetrahydropyridin-4-yl)-2-(3,4-dimethoxyphenyl)-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-8-methyl-7-(l-methyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrimido[l,2-b]pyridazin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrazino[l,2-a]pyrimidin-4-one,
    2-(3-fluoro-4-methoxyphenyl)-7-(piperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-(l-ethylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[cis-4-(methylamino)cyclohexyl]-4H-pyrido[l,2-a]pyrimidin-4-one,
    487
    2017204248 06 Dec 2018
    2-(3,4-dimethoxyphenyl)-7-(piperidin-3-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[4-(propylamino)piperidin-l-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2-a]pyrimidin4-one,
    2-(3,4-dimethoxyphenyl)-7-[(8aR)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l-methyl-l,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[4-(propan-2-ylamino)piperidin-l-yl]-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-[(8aS)-hexahydropyrrolo[l,2-a]pyrazin-2(lH)-yl]-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l-ethyl-1,2,3,6-tetrahydropyridin-4-yl)-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-methyl-7-[4-(morpholin-4-yl)piperidin-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-{4-[(2-hydroxyethyl)amino]piperidin-l-yl}-9-methyl-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l-methylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    7-[4-(diethylamino)piperidin-l-yl]-2-(3,4-dimethoxyphenyl)-9-methyl-4H-pyrido[l,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-(l-ethylpiperidin-4-yl)-4H-pyrido[l,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-{4-[(2-hydroxyethyl)(methyl)amino]piperidin-l-yl}-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7-[(3R)-3-methylpiperazin-l-yl]-4H-pyrido[l,2-a]pyrimidin-4one,
    2-(3,4-dimethoxyphenyl)-9-ethyl-7 - [(8aR)-hexahydropyrrolo [ 1,2-a]pyrazin-2( 1 H)-yl] -4Hpyrido[l ,2-a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7-{4-[(2-methoxyethyl)amino]piperidin-l-yl}-9-methyl-4Hpyrido[l ,2-a]pyrimidin-4-one,
    488
    2-(3,4-dhnethoxyphenyl)-7-{4-[(dimethylamino)methyl]piperidin-l-yl}-4H-pyrido[ 1,2a]pyrimidin-4-one,
    2-(3,4-dimethoxyphenyl)-7- [4-(pyrrolidin-1 -yl meth yl )p i peri di η-1 -yl] -4H-pyrido [1,2a]pyrimidin-4-one, and
    2-(3,4-dimethoxyphenyl)-7-[4-(piperidin-l-ylmethyl)piperidin-l-yl]-4H-pyrido[l,2-a]pyrimidin4-one, or a salt, isotopologue, stereoisomer, racemate, enantiomer, diastereomer or tautomer thereof.
    2017204248 06 Dec 2018
    489
    2017204248 06 Dec 2018
  10. 10. A method for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene, comprising contacting a human cell with the compound of claim 9.
  11. 11. The method of claim 10, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
  12. 12. A method for increasing the amount of Smn protein, comprising contacting a human cell with the compound of claim 9.
  13. 13. The method of claim 12, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
  14. 14. The use of a compound of any one of claims 1-4 and 9 in the manufacture of a medicament for enhancing the inclusion of exon 7 of SMN2 into mRNA that is transcribed from the SMN2 gene.
  15. 15. The use of claim 14, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
  16. 16. The use of a compound of any one of claims 1-4 and 9 in the manufacture of a medicament for increasing the amount of Smn protein.
  17. 17. The use of claim 16, wherein the human cell is a human cell from a human spinal muscular atrophy patient.
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