AU664560B2 - Tumor rejection antigen precursors, tumor rejection antigens and uses thereof - Google Patents
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Description
L- r OI'I DATE 30/12/92 APPLN. ID 21583/92 AOJP DATE 11/02/93 PCT NUMBER PCT/US92/04354 I l lli ll lll llAU9221 583i AU9221583 wc LI3 4s 4-1 INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (51) International Patent Classification 5 (11) International Publication Number: WO 92/20356 A61K 35/14, 39/00, 37/22 C07K 3/00, 13/00, 15/00 Al C07K 17/00, C12Q 1/68, 1/00 (43) International Publication Date: 26 November 1992 (26.11.92) C12 el4Q 15/00, C12N 1/20, 1/00 (21) International Application Number: PCT/US92/04354 (74) Agent: HANSON, Norman, Felfe Lynch, 805 Third Avenue, New York, NY 10022 (US).
(22) International Filing Date: 22 May 1992 (22.05.92) (81) Designated States: AT (European patent), AU, BB, BE (Eu- (30) Priority data: ropean patent), BF (OAPI patent), BG, BJ (OAPI pa- 705,702 23 May 1991 (23.05.91) US tent), BR, CA, CF (OAPI patent), CG (OAPI patent), 728,838 9 July 1991 (09.07.91) US CH (European patent), CI (OAPI patent), CM (OAPI 761f4Sl 23 September 1991 (23.09.91) US patent), CS, DE (European patent), DK (European pa- 807,043 12 December 1991 (12.12.91) US tent), ES (European patent), FI, FR (European patent), GA (OAPI patent), GB (European patent), GN (OAPI patent), GR (European patent), HU, IT (European pa- (71) Applicant (for all designated States except US): LUDWIG IN- tent), JP, KP, KR, LK, LU (European patent), MC (Eu- STITUTE FOR CANCER RESEARCH [US/US]; 1345 ropean patent), MG, ML (OAPI patent), MR (OAPI pa- Avenue of the Americas, New York, NY 10105 tent), MW, NL (European patent), NO, PL, RO, RU, SD, SE (European patent), SN (OAPI patent), TD (OA- (72) Inventors; and PI patent), TG (OAPI patent), US.
Inventors/Applicants (for US only) BOON, Thierry [BE/BE]; VAN DER BRUGGEN, Pierre [BE/BE]; VAN DEN EYNDE, Benoit [BE/BE]; VAN PEL, Aline [BE/BE]; Published DE PLAEN, Etienne [BE/BE]; LURQUIN, Christophe With international search report.
[BE/BE]; CHOMEZ, Patrick [BE/BE]; Avenue Hippoc- Before the expiration of the time limit for amending the claims rate 74, UCL 7459, B-1200 Brussels TRAVERSA- and to be republished in the event of the receipt of amendments.
RI, Catia [IT/IT]; Sesto S. Giovanni, 1-20099 Milano 664 (54) Title: TUMOR REJECTION ANTIGEN PRECURSORS, TUMOR REJECTION ANTIGENS AND USES THEREOF (57) Abstract The invention relates to an isolated DNA sequence which codes for an antigen expressed by tumor cells which is recognized by cytotoxic T cells, leading to lysis of the tumor which expresses it. Also described are cells transfected by the DNA sequence, and various therapeutic and diagnostic uses arising out of the properties of the DNA and the antigen for which it codes.
p WO 92/20356 PCT/US92/04354 1 TUMOR REJECTION ANTIGEN PRECURSORS, TUMOR REJECTION ANTIGENS AND USES THEREOF Number 7,043, filed December 12, 1991, which is a continuation-in- t of Serial Number 764,364, filed September 23, 1991, whicf a continuation-in-part of Serial Number 728,838, filed July 1991, which is a continuation-in-part of Serial Number 705,702, iled May 10 FIELD OF THE INVENTION This invention relates in general to the field of immunogenetics as applied to the study of oncology. More specifically, it relates to the study and analysis of mechanisms by which tumors are recognized by the organism's immune system such as through the presentation of so- Scalled tumor rejection antigens, and the expression of what will be referred to herein as "tumor rejection antigen precursors".
SBACKGROUND AND PRIOR ART S 20 The study of the recognition or lack of recognition of cancer cells by a host organism has proceeded in many different directions. Understanding of the field presumes some understanding of both basic immunology and oncology.
WO 92/20356 PCT/US92/04354 2 Early research on mouse tumors revealed that these displayed molecules which led to rejection of tumor cells when transplanted into syngeneic animals. These molecules are "recognized" by T-cells in the recipient animal, and provoke a cytolytic T-cell response with lysis of the transplanted cells. This evidence was first obtained with tumors induced in vitro by chemical carcinogens, such as methylcholanthrene. The antigens j expressed by the tumors and which elicited the T-cell i 10 response were found to be different for each tumor. See Prehn, et al., J. Natl. Cane. Inst. 18: 769-778 (1957); Klein et al., Cancer Res. 20: 1561-1572 (1960); Gross, Cancer Res. 3: 326-333 (1943), Basombrio, Cancer Res. 2458-2462 (1970) for general teachings on inducing tumors with chemical carcinogens and differences in cell surface antigens. This class of antigens has come to be known as "tumor specific transplantation antigens" or "TSTAs".
Following the observation of the presentation of such antigens when induced by chemical carcinogens, similar results were obtained when tumors were induced in vitro via ultraviolet radiation. See Kripke, J. Natl. Canc. Inst.
53: 333-1336 (1974).
While T-cell mediated immune responses were observed for the types of tumor described supra, spontaneous tumors were thought to be generally non-immunogenic. These were therefore believed not to present antigens which provoked a response to the tumor in the tumor carrying subject. See Hewitt, et al., Brit. J. Cancer 33: 241-259 (1976).
WO 92/20356 PCT/US92/04354 3 The family of tum- antigen presenting cell lines are immunogenic variants obtained by mutagenesis of mouse tumor cells or cell lines, as described by Boon et al., J. Exp.
Med. 152: 1184-1193 (1980), the disclosure of which is incorporated by reference. To elaborate, tum- antigens are obtained by mutating tumor cells which do not generate an immune response in syngeneic mice and will form tumors "tum+" cells). When these tum cells are mutagenized, they are rejected by syngeneic mice, and fail to form tumors (thus See Boon et al., Proc. Natl.
Acad. Sci. USA 74: 272 (1977), the disclosure of which is incorporated by reference. Many tumor types have been shown to exhibit this phenomenon. See, Frost et al., Cancer Res. 43: 125 (1983).
It appears that tum- variants fail to form progressive tumors because they elicit an immune rejection process.
The evidence in favor of this hypothesis includes the ability of "tum-" variants of tumors, those which do not normally form tumors, to do so in mice with immune systems suppressed by sublethal irradiation, Van Pel et al., Proc. Natl, Acad. Sci. USA 76: 5282-5285 (1979); and the observation that intraperitoneally injected tum- cells of mastocytoma P815 multiply exponentially for 12-15 days, and then are eliminated in only a few days in the midst of an influx of lymphocytes and macrophages (Uyttenhove et al., J. Exp. Med. 152: 1175-1183 (1980)). Further evidence includes the observation that mice acquire an immune memory WO 92/20356 PCT/US92/04354 4 which permits them to resist subsequent challenge to the same tum" variant, even when immunosuppressive amounts of radiation are administered with the following challenge of cells (Boon et al., Proc. Natl, Acad. Sci. USA 74: 272-275 (1977); Van Pel et al., supra; Uyttenhove et al., supra).
Later research found that when spontaneous tumors were subjected to mutagenesis, immunogenic variants were produced which did generate a response. Indeed, these variants were able to elicit an immune protective response against the original tumor. See Van Pel et al., J. Exp.
Med. 157: 1992-2001 (1983). Thus, it has been shown that it is possible to elicit presentation of a so-called "tumor rejection antigen" in a tumor which is a target for a syngeneic rejection response. Similar results have been obtained when foreign genes have been transfected into spontaneous tumors. See Fearson et al., Cancer Res. 48: 2975-1980 (1988) in this regard.
i A class of antigens has been recognized which are presented on the surface of tumor cells and are recognized i 20 by cytotoxic T cells, leading to lysis. This class of SIantigens will be referred to as "tumor rejection antigens" or "TRAs" hereafter. TRAs may or may not elicit antibody Sresponses. The extent to which these antigens have been studied, has been via cytolytic T cell characterization studies, in vitro the study of the identification of the antigen by a particular cytolytic T cell ("CTL" hereafter) subset. The subset proliferates upon recognition of the presented tumor rejection antigen, and I WO 92/20356 PCT/US92/04354 the cells presenting the antigen are lysed. Characterization studies have identified CTL clones which specifically lyse cells expressing the antigens. Examples of this work may be found in Levy et al., Adv. Cancer Res. 24: 1-59 (1977); Boon et al., J. Exp. Med. 152: 1184-1193 (1980); Brunner et al., J. Immunol. 124: 1627-1634 (1980); Maryanski et al., Eur. J. Immunol. 124: 1627-1634 (1980); Maryanski et al., Eur. J. Immunol. 12: 406-412 (1982); Palladino et al., Canc. Res. 47: 5074-5079 (1987). This type of analysis is required for other types of antigens recognized by CTLs, including minor histocompatibility antigens, the male specific H-Y antigens, and a class of antigens, referred to as "tum-" antigens, and discussed herein.
A tumor exemplary of the subject matter described supra is known as P815. See DePlaen et al., Proc. Natl.
Acad. Sci. USA 85: 2274-2278 (1988); Szikora et al., EMBO J 9: 1041-1050 (1990), and Sibille et al., J. Exp. Med.
172: 35-45 (1990), the disclosures of which are incorporated by reference. The P815 tumor is a mastocytoma, induced in a DBA/2 mouse with methylcholanthrene and cultured as both an in vitro tumor and a cell line. The P815 line has generated many tum" variants following mutagenesis, including variants referred to as P91A (DePlaen, supra), 35B (Szikora, supra), and P198 (Sibille, supra). In contrast to tumor rejection antigens and this is a key distinction the tum- antigens are -r;ii ?ii-iii.- i WO 92/20356 PCT/US92/04354 6 only present after the tumor cells are mutagenized. Tumor rejection antigens are present on cells of a given tumor without mutagenesis. Hence, with reference to the literature, a cell line can be tum such as the line referred to as and can be provoked to produce tumvariants. Since the tum- phenotype differs from that of the parent cell line, one expects a difference in the DNA of tum- cell lines as compared to their tum+ parental lines, I and this difference can be exploited to locate the gene of interest in tum- cells. As a result, it was found that genes of tum" variants such as P91A, 35B and P198 differ I from their normal alleles by point mutations in the coding regions of the gene. See Szikora and Sibille, supra, and Lurquin et al., Cell 58: 293-303 (1989). This has proved not to be the case with the TRAs of this invention. These papers also demonstrated that peptides derived from the tumantigen are presented by the Ld molecule for recognition i by CTLs. P91A is presented by L d P35 by D d and P198 by K d It has now been found that the genes which code for the molecules which are processed to form the presentation tumor rejection antigens (referred to as "tumor rejection antigen precursors", "precursor molecules" or "TRAPs" hereafter), are not expressed in most normal adult tissues but are expressed in tumor cells. Genes which code for the TRAPs have now been isolated and cloned, and represent a portion of the invention disclosed herein.
WO 92/20356 PCT/US92/04354 7 The gene is useful as a source for the isolated and purified tumor rejection antigen precursor and the TRA themselves, either of which can be used as an agent for treating the cancer for which the antigen is a "marker", as well as in various diagnostic and surveillance approaches to oncology, discussed infra. It is known, for example, that tum cells can be used to generate CTLs which lyse cells presenting different tum- antigens as well as tum cells. See, Maryanski et al., Eur. J. Immunol 12: 401 (1982); and Van den Eynde et al., Modern Trends in Leukemia IX (June 1990), the disclosures of which are incorporated by reference. The tumor rejection antigen precursor may be expressed in cells transfected by the gene, and then used to generate an immune response against a tumor of interest.
In the parallel case of human neoplasms, it has been observed that autologous mixed lymphocyte-tumor cell cultures ("MLTC" hereafter) frequently generate responder lymphocytes which lyse autologous tumor cells and do not lyse natural killer targets, autologous EBV-transformed B cells, or autologous fibroblasts (see Anichini et al., Immunol. Today 8: 385-389 (1987)). This response has been particularly well studied for melanomas, and MLTC have been carried out either with peripheral blood cells or with tumor infiltrating lymphocytes. Examples of the literature in this area including Knuth et al., Proc. Natl. Acad. Sci.
USA 86: 2804-2802 (1984); Mukherji et al., J. Exp. Med.
WO 92/20356 PCT/US92/04354 8 158: 240 (1983); H6rin et all, Int. J. Canc. 39: 390-396 (1987); Topalian et al, J. Clin. Oncol 6: 839-853 (1988).
Stable cytotoxic T cell clones ("CTLs" hereafter) have been derived from MLTC responder cells, and these clones are specific for the tumor cells. See Mukherji et al., supra, Herin et all, supra, Knuth et al., supra. The antigens recognized on tumor cells by these autologous CTLs do not appear to represent a cultural artifact, since they are found on fresh tumor cells. Topalian et al., supra; Degiovanni et al., Eur. J. Immunol. 20: 1865-1868 (1990).
These observations, coupled with the techniques used herein to isolate the genes for specific murine tumor rejection antigen precursors, have led to the isolation of nucleic acid sequences coding for tumor rejection antigen l precursors of TRAs presented on human tumors. It is now possible to isolate the nucleic acid sequences which code Sfor tumor rejection antigen precursors, including, but not being limited to those most characteristic of a particular tumor, with ramifications that are described infra. These isolated nucleic acid sequences for human tumor rejection I antigen precursors and applications thereof, as described infra, are also the subject of this invention.
These and various other aspects of the invention are elaborated upon in the disclosure which follows.
WO 92/20356 PCT/US92/04354 9 BRIEF DESCRIPTION OF THE FIGURES Figure 1 depicts detection of transfectants expressing antigen P815A.
Figure 2 shows the sensitivity. of clones P1.HTR, PO.HTR, genomic transfectant P1A.T2 and cosmid transfectant P1A.TC3.1 to lysis by various CTLs, as determined by chromium release assays.
Figure 3 is a restriction map of cosmid C1A.3.1.
Figure 4 shows Northern Blot analysis of expression of gene P1A.
Figure 5 sets forth the structure of gene P1A with its restriction sites.
Figure 6 shows the results obtained when cells were transfected with the gene from P1A, either isolated from P815 or normal cells and then tested with CTL lysis.
Figure 7 shows lytic studies using mast cell line L138. 8A.
1 Figure 8 is a map of subfragments of the 2.4 kb antigen E fragment sequence which also express the antigen.
Figure 9 shows homology of sections of exon 3 from genes mage 1, 2 and 3.
Figure 10 shows the result of Northern blots for MAGE genes on various tissues.
WO 92/20356 PCT/US92/04354 Figure 11 presents the data of Figure 13 in table form.
Figure 12 shows Southern Blot experiments using the various human melanoma cell lines employed in this application.
Figure 13 is a generalized schematic of the expression of MAGE 1, 2 and 3 genes by tumor and normal tissues.
BRIEF DESCRIPTION OF SEQUENCES SEQ ID NO: 1 is cDNA for part of gene PIA.
SEQ ID NO: 2 presents coding region of cDNA for gene P1A.
I SEQ ID NO: 3 shows non coding DNA for P1A cDNA which is 3' to the coding region of SEQ ID NO: 2.
SEQ ID NO: 4 is the entire sequence of cDNA for P1A.
SSEQ ID NO: 5 is the genomic DNA sequence for P1A.
SEQ ID NO: 6 shows the amino acid sequence for the antigenic peptides for P1A TRA. The sequence is for cells which are A+ express both the A and B antigens.
i SEQ ID NO: 7 is a nucleic acid sequence coding for antigen
E.
SEQ ID NO: 8 is a nucleic acid sequence coding for MAGE- 1.
SEQ ID NO: 9 is the gene for MAGE-2.
SEQ ID NO: 10 is the gene for MAGE-21.
I ~4 WO 92/20356 PCr/US92/04354
SEQ
SEQ
SEQ
SEQ
SEQ
SEQ
SE Q
SEQ
SEQ
SEQ
SEQ
SEQ
SEQ
SEQ
ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO: ID NO' cDNA for MAGE-3.
the gene for MAGE-31.
the gene for MAGE-4.
the gene for MAGE-41.
cDNA for MAGE-4.
cDNA for genomic DNA for MAGE-51.
cDNA for MAGE-6.
genomic DNA for MAGE-7.
genomic DNA for MAGE-8.
genomic DNA for MAGE-9.
genomic DNA for MAGE-lO.
genomic DNA for MAGE-li.
genomic DNA for smage-I.
genomic DNA for smage-II.
DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS Many different "RAGE" genes have been identified, as will be seen from the sequences which follow the application. The protocols described in the following .~lrr i ~*Ra~ia -12examples were used to isolate these genes and cDNA sequences.
"MAGE" as used hereafter refers to a family of molecules, and the nucleic acids coding for them. These nucleic acids share a certain degree of homology and are expressed in tumor cells including several types of human tumor cells as well as in human tumors. The family is referred to as "MAGE" because the first members were identified in human melanoma cells. As the experiments which follow indicate, however, the members of the MAGE family are not at all restricted to melanoma tumors; rather, MAGE refers to a family of tumor rejection antigen precursors and the nucleic acid sequences coding therefore.
The antigens resulting therefrom are referred to herein as "MAGE TRAs" or "melanoma antigen tumor rejection antigens".
The acronym "smage" is used to described sequences of murine origin.
When "TRAP" or "TRAs" are discussed herein as being specific to a tumor type, this means that the molecule under consideration is associated with that type of tumor, although not necessarily to the exclusion of other tumor types.
|I
Example 1 In order to identify and isolate the gene coding for antigen P815A, gene transfection was used. This approach requires both a source of the gene, and a recipient cell S. line. Highly transfectable cell line Pl.HTR was the starting material for the recipient, but it could not be "used without further treatment, as it presents "antigen A", one of four recognised P815 tumor antigens. See Van Pel et ,a al., Molecular Genetics 11: 467-475 (1985). Thus, screening experiments were carried out to isolate cell lines which did not express the antigen and which nonetheless possessed P1.HTR's desirable qualities.
staffHahleoekeep/21583.92.vs 13.4 c 12a To do this, P1.HTR was screened with CTLs which were specific for each tumor antigens A, B, C and D. Such CTLs are described by Uyttenhove et al., J. Exp. Med. 157: 1040-1052 (1983).
4 4 .4
S
4
I'
.4, a, staff/ahleer4keepJ2l 583.92.vs 13.4 WO 92/20356 PCT/US92/04354 13 To carry out the selection, 10 cells of P1.HTR were mixed with 2-4xi0 6 cells of the CTL clone in a round bottom tube in 2 ml of medium, and centrifuged for three minutes at 150xg. After four hours at 37 0 C, the cells were washed and resuspended in 10 ml of medium, following Maryanski et al., Eur. J. Immunol. 12: 406-412 (1982). Additional information on the CTL assay and screening protocol, in general may be found in Boon et al., J. Exp. Med. 152: 1184-1193 (1980), and Maryanski et al., Eur. J. Immunol.
12: 406-412 (1982), the disclosure of which are incorporated by reference.
i When these selections were carried out, a cell line i variant was found which expressed neither antigen A or B.
Additional selections with CTLs specific for antigen C then Iyielded a variant which also lacked antigen C. Please see figure 2 for a summary of the results of these screenings.
The variant PO.HTR is negative for antigens A, B and C, and was therefore chosen for the transfection experiments.
The cell line PO.HTR has been deposited in accordance with the Budapest Treaty at the Institute Pasteur Collection Nationale De Cultures De Microorganismes, 28, Rue de Docteur Roux, 75724 Paris France, and has accession Snumber 1-1117.
This methodology is adaptable to secure other cell lines which are variants of a cell type which normally presents at least one of the four recognized P815 tumor antigens, antigens A, B, C and D, where the variants rn WO 92/20356 PCT/US92/04354 14 present none of antigens A, B and C. P1.HTR is a mastocytoma cell line, so it will be seen that the protocol enables the isolation of biologically pure mastocytoma cell lines which express none of P815 antigens A, B and C, but which are highly transfectable. Other tumor types may also be screened in this fashion to secure desired, biologically pure cell lines. The resulting cell lines should be at least as transfectable with foreign DNA as is P1.HTR, and should be selected so as to not express a specific antigen.
Example 2 Previous work reported by DePlaen et al., Proc. Natl.
Acad. Sci. USA 85: 2274-2278 (1988) the disclosure of which i is incorporated by reference herein had shown the efficacy of using cosmid library transfection to recover genes coding for tum- antigens.
Selective plasmid and genomic DNA of P1.HTR were i prepared, following Wl1fel et al., Immunogenetics 26: 178- !i 187 (1987). The transfection procedure followed Corsaro et al., Somatic Cell Molec. Genet 7: 603-616 (1981), with some i 20 modification. Briefly, 60 Mg of cellular DNA and 3 ig of DNA of plasmid pHMR272, described by Bernard et al., Exp.
'Cell. Biol. 158: 237-243 (1985) were mixed. This plasmid confers hygromycin resistance upon recipient cells, and therefore provides a convenient way to screen for transfectants. The mixed DNA was combined with 940 ul of 1 mM Tris-HCl (pH 0.1 mM EDTA; and 310 ul 1M CaC1 2 WO 92/20356 PCT/US92/04354 The solution was added slowly, and under constant agitation to 1.25 ml of 50 mM Hepes, 280 mM NaCl, 1.5 mM Na HP0 4 adjusted to pH 7.1 with NaOH. Calcium phosphate DNA precipitates were allowed to form for 30-45 minutes at room temperature. Following thisy fifteen groups of PO.HTR cells (5x10 6 per group were centrifuged for 10 minutes at 400 g. Supe:natants were removed, and pellets were resuspended directly into the medium containing the DNA precipitates. This mixture was incubated for 20 minutes at 37 0 C, after which it was added to an 80 cm 2 tissue culture flask containing 22.5 ml DMEM, supplemented with 10% fetal S calf serum. After 24 hours, medium was replaced. Forty- I eight hours after transfection, cells were collected and counted. Transfected cells were selected in mass culture i using culture medium supplemented with hygromycin B (350 Sug/ml). This treatment selected cells for hygromycin resistance.
IFor each group, two flasks were prepared, each I containing 8x10 6 cells in 40 ml of medium. In order to I 20 estimate the number of transfectants, 1x16 cells from each group were plated in 5 ml DMEM with 10% fetal calf serum (FCS), 0.4% bactoagar, and 300 ug/ml hygromycin B. The colonies were then counted 12 days later. Two independent determinations were carried out and the average taken.
This was multiplied by 5 to estimate the number of transfectants in the corresponding group. Correction had L WO 92/20356 PCT/US92/04354 16 to be made for the cloning efficiency of P815 cells, known to be about 0.3.
Example 3 Eight days after transfection as described in example 2, supra, antibiotic resistant transfectants were separated from dead cells, using density centrifugation with Ficoll- Paque. These cells were maintained in non-selective medium for 1 or 2 days. The cells were plated in 96 well microplates (round bottom), at 30 cells/microwell in 200 ul of culture medium. Anywhere from 100-400 microwells were prepared, depending on the number of transfectants prepared. Agar colony tests gave estimates of 500-3000.
After 5 days, the wells contained about 6x10 4 cells and replicate plates were prepared by transferring 1/10 of the wells to microplates which were then incubated at 300C.
One day later, master plates were centrifuged, medium l removed, and 750 CTLs against P815 antigen A I were added to each well together with 106 irradiated syngeneic feeder spleen cells in CTL culture medium containing 40 U/ml recombinant human IL-2, and HAT medium to kill stimulator cells. Six days later, plates were 1 examined visually to identify wells where CTLs had proliferated. Where plates showed proliferating microcultures, aliquots of 100 ul of the wells were transferred to another plate containing 51 Cr labeled P1.HTR target cells (2x10 3 4x10 3 per well), and chromium release r^ WO 92/20356 PCT/US92/04354 17 was measured after 4 hours. Replicate microcultures corresponding to those showing high CTL activity were expanded and cloned by limited dilution in DMEM with FCS. Five days later, about 200 clones were collected and screened with the CTL.P1:5 cell line, described supra, in a visual lysis assay. See figure 1A for these results.
In these experiments, three of the fifteen groups of transfectants yielded a few positive microcultures. These microcultures were tested for lytic activity against P1.HTR, as described supra. Most of the microcultures i where proliferation was observed showed lytic activity.
This activity was well above background, as shown in figure lB. This figure summarizes data wherein two groups of cells (groups and 400 and 300 microwells were j seeded with 30 hygromycin resistant transfected cells.
Amplification and duplication of the microcultures was followed by addition of anti-A CTL P1:5. Six days later, lytic activity against P1.HTR was tested. In the figure, each point represents lytic activity of a single microculture.
Duplicate microcultures corresponding to several Spositive wells were subcloned, and more than 1% of the subclones were found to be lysed by anti-A CTL. Thus, three independent transfectants expressing P815A were obtained from 33,000 hygromycin resistant transfectants.
One of these lines, referred to hereafter as P1A.T2 was tested further.
i WO 92/20356 PCT/US92/04354 18 The relevant antigen profile of P1A.T2 is shown in figure 2, this being obtained via anti-CTL assays of the type described supra.
Example 4 The CTL assays carried out for P1A.T2 demonstrated that it presented antigen A ("P815A"), and therefore had received the gene from P1.HTR. To that end, this cell line was used as a source for the gene for the antigen precursor in the following experiments.
Prior work had shown that genes coding for tumantigens could be recovered directly from transfectants i obtained with a cosmid library. See DePlaen et al., Proc.
Natl. Acad. Sci. USA 85: 2274-2278 (1988). This procedure was followed for recovery of the P815 gene.
Total genomic DNA of P1A.T2 was partially digested with restriction endonuclease Sau 3A1, and fractionated by NaCl density gradient ultracentrifugation to enrich for kb DNA fragments, following Grosveld et al., Gene 6715-6732 (1982). These fragments were ligated to cosmid arms of C2RB, described by Bates et al., Gene 26: 137-146 (1983), the disclosure of which is incorporated by I reference. These cosmid arms had been obtained by cleavage with SmaI and treatment with calf intestinal phosphatase, followed by digestion with BamHI. Ligated DNA was packaged into lambda phage components, and titrated on E. coli ED 8767, following Grosveld et al., supra. Approximately 9x10 i i I *urr"R SWO 92/20356 PCT/US92/04354 19 ampicillin resistant colonies were obtained per microgram of DNA insert.
The cosmid groups were amplified by mixing 30,000 independent cosmids with 2 ml of ED 8767 in 10 mM MgCl 2 incubated 20 minutes at 37 0 C, diluted with 20 ml of Luria Bertani medium, followed by incubation for one hour.
This suspension was titrated and used to inoculate 1 liter of LB medium in the presence of ampicillin (50 ug/ml). At a bacterial concentration of 2x10 8 cells/ml (OD 6 0 a 10 ml aliquot was frozen, and 200 ug/ml chloramphenicol was added to the culture for overnight incubation. Total cosmid DNA was isolated by alkaline lysis procedure, and purified on CsCl gradient.
In these experiments, a library of 650,000 cosmids was prepared. The amplification protocol involved the use of 21 groups of approximately 30,000 cosmids.
Example Using the twenty-one groups of cosmids alluded to supra, (60 ug) and 4 ug of pHMR272, described supra, groups of 5x106 PO.HTR cells were used as transfectant hosts.
Transfection was carried out in the same manner as described in the preceding experiments. An average of 3000 transfectants per group were tested for antigen presentation, again using CTL assays as described. One group of cosmids repeatedly yielded positive transfectants, at a frequency of about 1/5,000 drug resistant I I -i th 1v WO 92/20356 PCT/US92/04354 11 transfectants. The transfectants, as with P1A.T, also showed expression of both antigen A and B. The pattern of expression of transfectant PlA.TC3.1 is shown in figure 2.
As indicated in Example 5, supra, three independent cosmid transfected cells presenting P815A antigen were isolated. The DNA of these transfectants was isolated and packaged directly with lambda phage extracts, following DePlaen et al., Proc. Natl. Acad. Sci. USA 85: 2274-2278 (1988). The resulting product was titrated on E. coli ED 8767 with ampicillin selection, as in Example Similarly, amplification of the cosmids and transfection followed Example 5, again using PO.HTR.
High frequencies of -transfection iwere observed, as described in Table 1, which follows: Table LTransfer of the expression of antigen PSISA by cos-nids ob-.2ined by direct packaging Transfeciant No. of cosrnids obtiainre' No. of transfectanis obiaintd w*%ith b)y direct packaging of expressing PE15A no.
the cosmid library) 0.5 pig of D)NA of HmBT trznsferiants 7C31] 32 E7/192 TC3.2 32000 49/364 TC3.3 .44 25/72
L
P
I 4 1 WO 92/20356 PCr/US92/04354 The cosmids were analyzed with restriction enzymes and it was found that directly packaged transfectant P1A.TC3.1 contained 32 cosmids, 7 of which were different. Each of these 7 cosmids was transfected into PO.HTR, in the manner described supra, and again, following the protocols described above, transfectants were studied for presentation of P815A. Four of the cosmid transfectants showed P815A presentation and, as with all experiments described herein, P815B was co-expressed.
Of the four cosmids showing presentation of the two antigens, cosmid C1A.3.1 was only 16,7 kilobases long, and was selected for further analysis as described infra.
The cosmid C1A.3.1 was subjected to restriction endonuclease analysis, yielding the map shown in Figure 3.
All EcoRI fragments were transfected, again using the above described protocols, and only the 7.4 kilobase fragment produced a transfectant that anti-A CTLs could lyse. Similar experiments were carried out on the PstI fragments, and only a 4.1 kb fragment fully contained within the 7.4 kb EcoRI fragment produced lysable transfectants.
This fragment the 4.1 kb PstI fragment), was digested with SmaI, giving a 2.3 kb fragment which also yielded host cells presenting antigens A and B after transfection. Finally, a fragment 900 bases long, secured with Smal/Xbal, also transferred expression of the precursors of these two antigens, the transfected host cell presented both antigen A and antigen B.
i; WO 92/20356 PCT/US92/04354 22 Example 7 The 900 base fragment described above was used as a probe to detect the expression of the P815A gene in parent cell line P1.HTR. To accomplish this, total cellular RNA was first isolated using the guanidine-isothiocyanate procedure of Davis et al., Basic Methods In Molecular Biology (Elseview Science Publishing Co, New York) (1986).
The same reference was the source of the method used to isolate and purify polyA mRNA using oligodT cell-lose column chromatography.
Samples were then subjected to Northern Blot analysis.
RNA samples were fractionated on 1% agarose gels containing 0.66 M formaldehyde. The gels were treated with (SSC: 0.15 M NaCI; 0.015 M sodium citrate, pH 7.0) for minutes before overnight blotting on nitrocellulose membranes. These were baked for two hours at 80°C, after which the membranes were prehybridized for 15 minutes at 0 C in a solution containing 10% dextran sulfate, 1% SDS and 1M NaCl. Hybridization was then carried out using denatured probe (the 900 base fragment), together with 100 ug/ml salmon sperm DNA.
When this protocol was carried out using P1.HTR poly A RNA, a band of 1.2 kb and two fainter bands were identified, as shown in Figure 4, lane 1 (6 ug of the RNA).
The same probe was used to screen a cDNA library, prepared from poly-A+ RNA from the cell line. This yielded 1. k-_ WO 92/20356 PCT/US92/04354 23 a clone with a 1kb insert, suggesting a missing 5' end.
The Northern blots for the cDNA are not shown.
Hybridization experiments in each case were carried out overnight at 60 0 C. The blots were washed twice at room temperature with 2xSSC and twice at 60 0 C with 2xSSC supplemented with 1% SDS.
The foregoing experiments delineated the DNA A expressing the P815A antigen precursor sufficiently to allow sequencing, using the well known Sanger dideoxy chain termination method. This was carried cut on clones generated using a variety of restriction endonucleases and by specific priming with synthetic oligonucleotide primers.
i The results for exons of the gene are set forth in sequence id no: 4.
a gZxample 8 The Northern analysis described supra suggested that SI the 5' end of the cDNA was missing. To obtain this sequence, cDNA was prepared from P1.HTR RNA using a primer corresponding to positions 320-303. The sequence was then i 20 amplified using the polymerase chain reaction using a 3' primer corresponding to positions 286-266 and a 5' primer 'described by Frohman et al., Proc. Natl. Acad. Sci. USA 8998-9002 (1988). A band of the expected size (270 bases) was found, which hybridized to the 900 bp SmaI/Xbal fragment described supra on a Southern blot. Following cloning into ml3tg 130 X tg 131, the small, 270 bp fragment was sequenced. The sequence is shown in sequence id no: 1.
)~aPI~rC
I
WO 92/20356 PCT/US92/04354 24 Example 9 Following the procurement of the sequences described in Examples 7 and 8 and depicted in seq id no: 4, a 5.7 kb Sregion of cosmid C1A.3.1 was sequenced. This fragment was fknown to contain the 900 base fragment which expressed P815A in transfectants. This experiment permitted delineation of introns and exons, since the cosmid is genomic in origin.
The delineated structure of the gene is shown in figure 5. Together with seq id no: 4, these data show that the gene for the antigen precursor, referred to as "P1A" hereafter, is approximately 5 kilobases long and contains 3 exons. An ORF for a protein of 224 amino acids starts in exon 1, ending in exon 2. The 900 base pair fragment which transfers expression of precursors for antigens A and B only contains exon 1. The promoter region contains a CAAT box, as indicated in seq. id no: 1, and an enhancer sequence. This latter feature has been observed in promoters of most MHC class I genes, as observed by Geraghty et al., J. Exp. Med 171: 1-18 (1990); Kimura et al., Cell 44: 261-272 (1986).
A computer homology search was carried out, using program FASTA with K-triple parameters of 3 and 6, as suggested by Lipman et al., Science 227: 1435-1441 (1985), and using Genbank database release 65 (October 1990). No homology was found except for a stretch of 95 bases corresponding to part of an acid region coded by exon 1 (positions 524-618), which is similar to sequences coding r c i r WO 92/20356 PCT/US92/04354 for acidic regions in mouse nucleolar protein N038/B23, as described by Bourbo.i et al., Mol. Biol. 200: 627-638 (1988), and Schmidt-Zachmann et al., Chromosoma 96: 417- 426 (1988). Fifty six of 95 bases were identical. In order to test whether these homologies were the reason for cross hybridizing, experiments were carried out using a mouse spleen cDNA library screened with the 900 base fragment. cDNA clones corresponding closely to the sizes of the cross hybridizing bands were obtained. These were partially sequenced, and the 2.6 kb cDNA was found to correspond exactly to reported cDNA sequence of mouse j nucleolin, while the 1.5 kb cDNA corresponded to mouse Snucleolar protein N038/B23.
Analysis of the nucleotide sequence of the gene, referred to as "P1A" hereafter, suggests that its coded product has a molecular mass of 25 kd. Analysis of the sequence id no: 4 shows a potential nuclear targeting signal at residues 5-9 (Dingwall et al., Ann. Rev. Cell SBiol. 2: 367-390 (1986)), as well as a large acidic domain at positions 83-118. As indicated supra, this contains the Sregion of homology between P1A and the two nucleolar proteins. A putative phosphorylation site can be found at position 125 (serine). Also, a second acidic domain is found close to the C-terminus as an uninterrupted stretch of 14 glutamate residues. A similar C-terminal structure has been found by Kessel et al. Proc. Natl. Acad. Sci. USA 84: 5306-5310 (1987), in a murine homeodomain protein having nuclear localization.
w WO 92/20356 PCT/US92/04354 26 In studies comparing the sequence of gene PlA to the sequences for P91A, 35B and P198, no similarities were found, showing that P1A is indicative of a different class of genes and antigens.
Example With the P1A probe and sequence in hand, investigations were carried out to determine whether the gene present in normal tissue was identical to that expressed by the tumor. To do this, phage libraries were prepared, using lambda zapII 10 and genomic DNA of DBA2 murine kidney cells. P1A was used as a probe.
Hybridization conditions were as described supra, and a hybridizing clone was found. The clone contained exons one and two of the P1A gene, and corresponded to positions 0.7 to 3.8 of figure 5. Following localization of this sequence, PCR amplification was carried out to obtain the sequence corresponding to 3.8 to 4.5 of figure Sequence analysis was carried out, and no differences were found between the gene from normal kidneys and the P1A gene as obtained from the P815 tumor cells.
In further experiments, the gene as found in DBA/2 kidney cells was transfected into PO.HTR, as described supra. These experiments, presented pictorially in figure 7, showed that antigens A and B were expressed as efficiently by the kidney gene isolated from normal kidney cells as with the PlA gene isolated from normal kidney cells.
IsP WO 92/20356 PCT/US92/04354 27 These experiments lead to the conclusion that the gene coding for the tumor rejection antigen precursor is a gene that does not result from a mutation; rather, it would appear that the gene is the same as one present in normal cells, but is not expressed therein. The ramifications of this finding are important, and are discussed infra.
In studies not elaborated upon herein, it was found that variants of the gene were available. Some cells were "P1A rather than the normal The only difference between these is a point mutation in exon 1, with the 18th triplet coding for Ala in the variant instead of Val.
i Example 11 IAdditional experiments were carried out with other i cell types. Following the protocols described for Northern blot hybridizations supra, RNA of normal liver and spleen cells was tested to determine if a transcript of the P1A gene could be found. The Northern blot data are presented I in figure 4 and, as can be seen, there is no evidence of expression.
The murine P815 cell line from which P1A was isolated is a mastocytoma. Therefore, mast cell lines were studied to determine if they expressed the gene. Mast cell line MC/9, described by Nabel et al., Cell 23: 19-28 (1981), and short term cultures of bone marrow derived mast cells were tested in the manner described supra (Northern blotting), but no transcript was found. In contrast when a Balb/C derived IL-3 dependent cell line L138.8A (Hltner et al., WO 92/20356 PCT/US92/04354 28 J. Immunol. 142: 3440-3446 (1989)) was tested, a strong signal was found. The mast cell work is shown in figure 4.
It is known that both BALB/C and DBA/2 mice share H- 2 d haplotype, and thus it was possible to test sensitivity to lysis using the CTLs described supra. Figure 8 shows these results, which essentially prove that anti-A and anti-B CTLs lysed the cells strongly, whereas anti-C and anti-D lines did not.
Further tests were carried out on other murine tumor cell lines, teratocarcinoma cell line PCC4 (Boon et al., Proc. Natl. Acad. Sci. USA 74: 272-275 (1977), and leukemias LEC and WEH1-3B. Expression could not be detected in any of these samples.
Example 12 The actual presentation of the P1A antigen by MHC molecules was of interest. To test this, cosmid C1A.3.1 was transfected into fibroblast cell line DAP, which shows phenotype H-2 The cell lines were transfected with genes expr ssing one of the Kd, Dd, and Ld antigen. Following transfection with both the cosmid and the MHC gene, lysis with CTLs was studied, again as described supra. These studies, summarized in Table 2, show that Ld is required for presentation of the P1A antigens A and B.
^r WO 92/20356 2 PCT'/US92/04354 T2,2 H-2-yest-i-ticr, or an-,igms PEISA z-.d PE)SB i e. I No of clones ysed b th~e CTL/ no. of )J:B clcesl C-7L vdtiA CiT La1i.B DAP (H-2k) 0/208 0/1 9A DA p 4 Xd 0/165 0/162 Dd 0/157 0/229 D)A? d 25/33 15/20 OCosnid CIA.3.1 containing ite entire PIA gene -Is trznsfecied in DAP cells previou.sly transfecied with R[ 2 d class I genes as indicated.
ORIndependent d.ugresisi'nt colonies w'ere lested for Jy-sis by IniA or a-zsi.B CTL i: rsa a SS sy.
The observation that one may associate presentation of a tumor rejection antigen with a particular MIIC molecule was confirmed in experiments with human cells and HLA molecules, as elaborated upon infra.
EVxam~le 13 Using the sequence of the PlA gene as well as the amino acid sequence derivable therefrom, antigenic peptides which were A+ B+ characteristic of cells which express both the A and B antigens), and those which are A- B were identified. The peptide is presented in Figure This peptide when administered to samples of PO.HTR cells WO 92/20356 PCT/US92/04354 in the presence of CTL cell lines specific to cells presenting it, led to lysis of the PO.HTR cells, lending support to the view that peptides based on the product expressed by the gene can be used as vaccines.
Example 14 The human melanoma cell line referred to hereafter as MZ2-MEL is not a clonal cell line. It expresses four stable antigens recognized by autologous CTLs, known as antigens E, F, and In addition, two other antigens and are expressed by some sublines of the tumor.
CTL clones specific for these six antigens are described by Van den Eynde et al., Int. J. Canc. 44: 634-640 (1989).
Among the recognized subclones of MZ2-MEL are MEL.43, and MEL3.1. (Van den Eynde et al., supra). Cell line MEL3.1 expresses antigen E, as determined by CTL studies as described for P815 variants, supra, so it was chosen as a source for the nucleic acid sequence expressing the antigen precursor.
In isolating the pertinent nucleic acid sequence for a tumor rejection antigen precursor, the techniques developed supra, showed that a recipient cell is needed which fulfills two criteria: the recipient cell must not express the TRAP of interest under normal conditions, and (ii) it must express the relevant class I HLA molecule.
Also, the recipient cell must have a high transfection frequency, it must be a "good" recipient.
WO 92/20356 PCT/US92/04354 31 In order to secure such a cell line, the clonal subline ME3.1 was subjected to repeated selection with anti-E CTL 82/30 as described by Van den Eynde, supra. The repeated cycles of selection led to isolation of subclone MZ2-MEL-2.2 isc This subclone is also HPRT, sensitive to HAT medium: 10 4 M hypoxanthine, 3.8 x 10 7 aminopterine, 1.6 x 10 5 M 2-deoxythymidine). The subclone is referred to as "MEL-2.2" for simplicity hereafter.
Example The genomic DNA of MEL3.0 was prepared following W8lfel et al., Immunogenetics 26: 178-187 (1987), the disclosure of which is incorporated by reference. The plasmid pSVtkneoB, as described by Nicolas et al., Cold Spring Harb., Conf. Cell Prolif. 10: 469-485 (1983) confers geneticin resistance, so it can be used as a marker for cotransfection, as it was in this experiment.
Following a procedure similar but not identical to that of Corsao et al., Somatic Cell Molec. Genet 7: 603- 616 (1981), total genomic DNA and the plasmid were cotransfected. The genomic DNA (60 Mg) and plasmid DNA (6 h g) were mixed in 940 Ml of 1 mM Tris-HCl (pH 0.1 mM EDTA, after which 310 Ml of 1M CaC1 2 was added. This solution was slowly added, under constant agitation, to 1.25 ml of 2xHBS (50 mM HEPES, 280 mM NaC1 1.5 mM Na 2
HPO
4 adjusted to pH 7.1 with NaOH). The calcium phosphate DNA precipitates were allowed to form for 30-45 minutes at room WO 92/20356 PCT/US92/04354 32 temperature, after which they were applied to 80 cm 2 tissue culture flasks which had been seeded 24 hours previously with 3x10 6 MEL2.2 cells, in 22.5 ml of melanoma culture medium (Dulbecco's Modified Eagle's Medium) supplemented with 10% fetal calf serum. After 24 hours, the medium was replaced. Forty eight hours after transfection, the cells were harvested and seeded at 4x10 cells per 80 cm flask in melanoma culture medium supplemented with 2 mg/ml of I geneticin. The geneticin serves as a selection marker.
1 10 Example 16
I
1 -i Thirteen days after transfection, geneticin-resistant colonies were counted, harvested, and cultured in Snonselective medium for 2 or 3 days. Transfected cells were then plated in 96-well microplates at 200 cells/well in 200 ul of culture medium with 20% fetal calf serum (FCS) in order to obtain approximately 30 growing colonies per well. The number of microcultures was aimed at achieving j redundancy, such that every independent transfectant Sshould be represented at least four times.
I 20 After 10 days, wells contained approximately 6x10 4 b cells. These cells were detached, and 1/3 of each microculture was transferred to a duplicate plate. After 6 hours, after readherence, medium was removed and 1500 anti-E CTL (CTL 82/30), were added to each well in 100 pl of CTL culture medium with 35 U/ml of IL-2. One day later, the supernatant (50 pl) was harvested and examined t WO 92/20356 PCT/US92/04354 33 for TNF concentration, for reasons set forth in the following example.
Example 17 The size of the mammalian-genome is 6x10 6 kb. As the average amount of DNA integrated in each drug-resistant transfectant was expected to be about 200 kb, a minimum of 30,000 transfectants would need to be examined to ascertain whether antigen E had been transfected. Prior work with murine cells had shown that when a CTL stimulation assay was used, groups containing only 3% of cells expressing the antigen of interested could be identified. This should Sreduce the number of assays by a factor of 30. While an anti-E CTL assay, as described supra, in mixed cells was helpful, it was not sufficient in that consistent results could not be obtained.
As a result, an alternative test was devised.
Stimulation of CTLs was studied by release of tumor j necrosis factor using well known methodologies which need not be repeated here. As described in Example 15, 1500 CTL 82/30 cells had been added per well of transfectants. These CTLs were collected 6 days after stimulation. As indicated supra, after 1/3 of the cells in each well had been removed and the remaining 2/3 (4x10 4 had readhered, the CTLs and IL-2 were added thereto. The 50 pl of supernatant was removed 24 hours later and transferred to a microplate containing 3x10 4 W13 (WEHI-164 clone 13; WO 92/20356 PCT/US92/04354 34 Espevik et al., J. Immunol. Meth. 95: 99-105 (1986)) cells in 50 1l of W13 culture medium (RPMI-1640, supplemented with L-arginine (116 mg/1), L-asparagine (36 mg/l), Lglutamine (216 mg/1), and 10% FCS supplemented with 2 pg of actinomycin D at 37% in an 8% CO 2 at- sphere. The cell line W13 is a mouse fibrosarcoma cell line sensitive to TNF.
Dilutions of recombinant TNF-B in RPMI 1640 were added to target cell controls.
The W13 cultures were evaluated after 20 hours of incubation, and dead cell percentage was measured using an adaptation of the colorimetric assay of Hansen et al., J.
Immunol. Meth. 119: 203-210 (1989). This involved adding ml of (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide at 2.5 mg/ml in PBS, followed by two j hours of incubation at 37 0 C. Dark blue formazan crystals were dissolved by adding 100 Al of lysis solution (1 volume N,N dimethyl formamide mixed at 37 0 C with two volumes of water containing 30% sodium dodecyl sulphate, at pH 4.7 from 1.6% acetic acid and 2.5% 1N HC1). Plates were incubated at 37 0 C overnight, and ODs were taken at 570 nm using 650 nm as control. Dead cell percentage was determined via the formula: 100-(OD 570 sample well) 100 x 1
OD
5 70 well medium __1
I
WO 92/20356 PCT/US92/04354 following Espevik et al., J. Immunol. Meth. 95: 99-105 (1986). The results showed that even when the ratio of E/E cells was as low as 1/45, significant production of TNF was observed, thus showing active CTLs. This led to the decision to test the drug resistant transfectants in groups of Example 18 Cells were tested for TNF production as discussed in Example 17, supra. A total of 100 groups of E- cells (4x10 6 cells/group) were tested following transfection, and 7x10 4 independent geneticin resistant transfectants were obtained, for an average of 700 per group. Only one group of transfected cells led to a microculture which caused anti-E antigen CTL clone 82/30 to produce TNF. Of 300 clones tested, 8 were positive. These clones were then tested for lysis by anti-E CTL, using the standard 51 Cr release assay, and were found to be lysed as efficiently as the original E cell line. The transfectant E.T1, discussed herein, had the same lysis pattern as did MEL2.2 for CTLs i 20 against antigens B,C,D and F.
The fact that only one transfectant presented the antigen out of 70,000 geneticin resistance transfectants may at first seem very low, but it is not. The work described supra for P815 showed an average frequency of 1/13,000. Human DNA recipient MEL2.2 appears to integrate times less DNA than P1.HTR.
I
i; i f WO 92/20356 PC'/US92/04354 36 Example 19 Once transfectant E.T1 was found, analysis had to address several questions including whether an E contaminant of the cell population was the cause. The analysis of antigen presentation, described supra, shows that E.T1 is B- and just like the recipient cell MEL2.2.
It was also found to be HPRT-, using standard selection |S procedures. All E+ cells used in the work described herein, Showever, were HPRT+.
i 10 It was also possible that an E revertant of MEL2.2 was I the source for E.T1. To test this, the observation by I Perucho et al., Cell 22: 309-317 (1980), that cotransfected sequences usually integrate together at a single location I of recipient genome was employed. If antigen E in a Stransfectant results from cotransfec-tion with pSVtkneoB, then sequences should be linked and deletion of the antigen might also delete the neighboring pSVtkneoB sequences.
W8lfel et al., supra, has shown this to be true. If a normally E cell is transfected with pSVtkneoB, then sequences should be linked and deletion of the antigen might also delete the neighboring pSVtkneoB sequences. If a normally E cell transfected with pSVtkneoB is E.T1, however, "co-deletion" should not take place. To test this, the transfectant E.T1 was subjected to immunoselection with 82/30, as described supra. Two antigen loss variants were obtained, which resisted lysis by this CTL. Neither of these had lost geneticin b WO 92/20356 PCT/US92/04354 37 resistance; however, Southern blot analysis showed loss of several neor sequences in the variants, showing close i linkage between the E gene and neor qene in E.T1, leading to the conclusion that E.Ti was a transfectant.
V Example The E subclone MZ2-MEL 4B was used as a source of DNA for preparation of a cosmid library. This library of nearly 700,000 cosmids was transfected into MZ2-MEL 2.2 cells, following the cosmid transfection protocols described supra.
By packaging the DNA of cosmid transfectants directly Si into lambda phase components, it is sometimes possible to retrieve cosmids that contain the sequences of interest.
This procedure was unsuccessful here, so we rescued the transfected sequence by Ligating DNA of the transfectant to appropriate restriction fragments of cosmid vector pTL6.
This was tried with two transfectants and was successful with one of them. One cosmid, referred to as B3, was recovered from this experiment, and subjected to j 20 restriction endonuclease digestion via XmaI, or by BamHI it digestion of a large, 12 kb XmaI transfected fragment. The fragments were cloned into vector pTZ 18R, and then transfected into MEL2.2. Again, TNF production was the measure by which successful transfection was determined.
The experiments led to the determination of a gene sequence capable of transfecting antigen E on the 12 kb XmaI WO 92/20356 PCT/US92/04354 38 fragment, and then on the 2.4 kb fragment of BamHI digestion of the 12 kb segment.
The 2.4 kb fragment hybridizes with a 2.4 kb fragment from MZ2-MEL and with a T cell clone of patient MZ-2, as determined by Southern Blots (BamHI/Smal digested DNA).
The band is absent from E- antigen loss variants of MZ2- MEL, as seen in Figure 12.
iI S1 p.r
F;
WO 92/20356 PCI'/US92/04354 39 The sequence f or the E antigen precursor gene has been determined, and is presented herein: 1 10 301 CA ~CA 12: CGACCC7G 421 VGSAZXV.G 41 GACG~X 302 121 GT1CACZ 1142 AC7C=-.
62 0=?0.CC 121 r?:jkkCc 2441 AACG 1502 Cc.=XCJ 21 1?V-kOT 2.321 GCACA .2651 GCCK 1501 TCTTC.0CAC 1621 X7CATT 2162 &%M7A: 2042 GT~~ 2101 CcG 2261 C=VCTTA =22 AUMOCAV 2211 AA"="W.
2341 CGGIZ4 2401 ATWCT=?GO I %o 1 20 CT G GAT &C7ACCT
AXGGCCGC
C? C? CCCCAG ?G7GA.?CT
GC%GCT
~.CACJ.C
gA=:ZCT
?CAAGGC?.
CACGCAC
GCALWGG
I 20AAA
AC
A.ATG
!ACC
M CA
CT
CA?
1 30-, 1 4 C so COMAG.A LCACCC T A=-.AAo 7- ACU?'C :CWNC AC ah CO TCTC7 )LCN.?C CL TCCA Mx 3 M07: G=oCTTKGTD CXTCCG, UCCC CT?"AI A~bh.N.N0C "3v c=V4 wJA~ TC-LLA?0 CACT CC COCATCU AGL? OCAMGG~ 70CGTSUTG ak3CT GAzx"C3aG CGA-V.CP)= TOAGIOC CATCTTaCA CJ-*=A 'SAxvGG 2GCGIU.? OLCCA.-=C% &CT?2a CT3C:'QA hT:C?).AT tG.k??GG-A ~C OT'JLW7 AGM~hG A
GCTC:?
TCTGO.AJXA
CA=.=cC:? c-.TTCW???: ACCAAOs??
AV--.
2 4 3C: 420 4E: 540 11.0 540 I CC 20200 100 114: 226:
IS::
:120 2610 :14 0 28^.0 2660 1520 1950o
LCTCA
1 30
CCU??C?;
CATV-k"CTG
?CCCGAO
WwWThOhrC 1 40 ZLLMT=?! AATA2?A? A.LLA?&C ?GATLU.ZA AACTO=CGC ??CTGGAAOG iAT)6CC.LCO ALTXa.GGCT TOCCCM 36ATA= &CTOGUG MC?"?CC ??CGGMCMA WC~TTC?.A I so I s0 204D 2100 2260 2220 2250 2340 2400 2411 ii'" i I. IX~ WO 92/20356 PCF/US92/04354 Example 21 After the 2.4 kb genomic segment had been identified, studies were carried out to determine if an "E subline expressed any homologous DNA. Cell line MZ2-MEL 3.0 was used as a source, and a cDNA library was prepared from its mRNA, using art known techniques. The 2.4 kb segment was used as a probe, and mRNA of about 1.8 kb was identified as homologous, using Northern blot analysis. When cDNA was screened, clones were obtained showing almost complete identity to parts of the 2.4 kb fragment. Two exons were thus identified. An additional exon was located upstream of these, via sequencing segments of cosmid B3 located in front of the 2.4 kb BamHI fragment. The gene extends over about 4.5 kb, as shown in Figure 8. The starting point of the transcribed region was confirmed using PCR for the end of the cDNA. The three exons comprise 65, 73, and 1551 base pairs. An ATG is located at position 66 of exon 3, followed by an 828 base pair reading frame.
Example 22 To determine if smaller segments of the 2.4 kb fragment could transfer the expression of antigen E, smaller pieces corresponding to the larger gene were prepared, using art recognized techniques, and transferred into E- cells. Figure 8 shows the boundaries of the three segments.
WO 92/20356 PCT/US92/04354 41 Transfer of antigen expression in this manner indicates that the gene codes for the antigen precursor, rather than coding for a protein which activates the antigen.
Example 23 The probing of cDNA described supra revealed, surprisingly, two different but closely related cDNAs.
These cDNAs, when tested, did not transfer expression of antigen E, but they do show substantial homology to the first cDNA segment. The three segments, appear to indicate a newly recognized family of genes, referred to as "MAGE" for "melanoma antigen". In Figure 9, "mage directs expression of the antigen from MZ2 cells. Portions of the third exon of each gene are presented in Figure 9. The second and third sequences are more closely related to each S' other than the first (18.1 and 18.9% difference compared to the first; 12% with each other). Out of 9 cDNA clones i obtained, three of each type were obtained, suggesting S equal expression.
re 9 EEli 1 Arj WO 92/20356 PCT/US92/04354 42 r, AwCE ref crc to a family 99 tumor rcjcotin. antigen precursors and eic acid sequences coding therefore.
The antigens resulting therefrom ar red to herein as "MAGE TRAY' sr melanoma antigen tumor rjootion ant&g 'I Example 24 Experiments with mouse tumors have demonstrated that new antigens recognized by T cells can result from point mutations that modify active genes in a region that codes for the new antigenic peptide. New antigens can also arise I 10 from the activation of genes that are not expressed in most I normal cells. To clarify this issue for antigen MZ2-E, the mage-1 gene present in the melanoma cells was compared to that present in normal cells of patient MZ2.
Amplification by polymerase chain reaction (PCR) of DNA of phytohemagglutinin-activated blood lymphocytes using primers surrounding a 1300 bp stretch covering the first half of the 2.4 kb fragment was carried out. As expected, a PCR product was obtained whereas none was obtained with the DNA of the E- variant. The sequence of this PCR product proved identical to the corresponding sequence of the gene carried by the E melanoma cells. Moreover, it was found that antigen MZ2-E was expressed by cells transfected with the cloned PCR product. This result suggests that the activation of a gene normally silent is responsible for the appearance of tumor rejection antigen MZ2-E.
WO 92/20356 PCT/US92/04354 43 Example In order to evaluate the expression of gene mage-1 by various normal and tumor cells, Northern blots were hybridized with a probe covering most of the third exon.
In contrast with the result observed with human tumor cell line MZ2-MEL 3.0, no band was observed with RNA isolated from a CTL clone of patient MZ2 and phytohemagglutininactivated blood lymphocytes of the same patient. Also negative were several normal tissues of other individuals (Figure 10 and Figure 11). Fourteen melanoma cell lines of other patients were tested. Eleven were positive with bands of varying intensities. In addition to these culture cell lines, four samples of melanoma tumor tissue were analyzed. Two samples, including a metastasis of patient MZ2 proved positive, excluding the possibility that expression of the gene represented a tissue culture artefact. A few tumors of other histological types, including lung tumors were tested. Most of these tumors were positive (Figures 10 and 11). These results indicated that the MAGE gene family is expressed by many melanomas and also by other tumors. However, they provided no clear indication as to which of genes mage-1, 2 or 3 were expressed by these cells, because the DNA probes corresponding to the three genes cross-hybridized to a considerable extent. To render this analysis more specific, PCR amplification and hybridization with highly specific oligo- nucleotide probes were used. cDNAs were obtained and amplified by PCR using oligonucleotide primers WO 92/20356 PCT/US92/04354 44 corresponding to sequences of exon 3 that were identical for the three MAGE genes discussed herein. The PCR products were then tested for their ability to hybridize to three other oligonucleotides that showed complete specificity for one of the three genes (Figure Control experiments carried out by diluting RNA of melanoma MZ2- MEL 3.0 in RNA from negative cells indicated that under the conditions used herein the intensity of the signal decreased proportionally to the dilution and that positive signals could still be detected at a dilution of 1/300.
The normal cells (lymphocytes) that were tested by PCR were confirmed to be negative for the expression of the three MAGE genes, suggesting therefore a level of expression of less than 1/300 th that of the MZ2 melanoma cell line (Figure 11). For the panel of melanoma cell lines, the results clearly showed that some melanomas expressed MAGE genes mage 1, 2 and 3 whereas other expressed only mage-2 and 3 (Figures 11 and 10) Some of the other tumors also expressed all three genes whereas others expressed only mage-2 and 3 or only mage-3. It is impossible to exclude formally that some positive PCR results do not reflect the expression of one of the three characterized MAGE genes but that of yet another closely related gene that would share the sequence of the priming and hybridizing oligonucleotides. It can be concluded that the MAGE gene family is expressed by a large array of different tumors and that these genes are silent in the normal cells tested to this point.
WO 92/20356 111~ PCT'/US92/04354 Exammple 26 The availability of a sequence that transfects at high efficiency and efficiently expresses a TRAP made it possible to search for the associated major histocompatibility complex (MHC) class I molecule. The class I specificities of patient MZ2 are HLA-A1, A29, B37, B44 and C6. Four other melanomas of patients that had Al in common with MZ2 were cotransfected with the 2.4 kb fragment and pSVtkneoB. Three of them yielded neor transfectants that stimulated TNF release by anti-E CTL clone 82/30, which is CD8+ (Figure 10). No E- transfectant was obtained with four other melanomas, some of which shared A29, B44 or C6 with MZ2. This suggests that the presenting molecule for antigen MZ2-E is HLA-A1. In confirmation, it was found that, out of 6 melanoma cell lines derived from tumors of HLA-A1 patients, two stimulated TNF release by anti-E CTL clone 82/30 of patient MZ2. One of these tumor cell lines, MI13443-MEL also showed high sensitivity to lysis by these anti-E CTL. These two melanomas were those that expressed mage-1 gene (Figure 13). Eight melanomas of patients with HLA haplotypes that did not include Al were examined for their sensitivity to lysis and for their ability to stimulate TNF release by the CTL. None was found to be positive. The ability of some human anti-tumor CTL to lyse allogeneic tumors sharing an appropriate HLA specificity with the original tumor has been reported previously (Darrow, et al., J. Immunol. 142: 3329 (1989)). It is quite possible that antigenic peptides encoded by genes WO 92/20356 PCT/US92/04354 46 mage 2 and 3 can also be presented to autologous CTL by HLA-A1 or other class I molecules, especially in view of the similar results found with murine tumors, as elaborated upon supra.
Example 27 As indicated supra, melanoma MZ2 expressed antigens F, D and in addition to antigen E. Following the isolation of the nucleic acid sequence coding for antigen I E, similar experiments were carried out to isolate the t 10 nucleic acid sequence coding for antigen F.
To do this, cultures of cell line MZ2-MEL2.2, an E cell line described supra, were treated with anti-F CTL clone 76/6, in the same manner described for treatment with anti-E CTL clones. This resulted in the isolation of an F antigen loss variant, which was then subjected to several rounds of selection. The resulting cell line, "MZ2- MEL2.2.5" was completely resistant to lysis by anti-F CTLs, yet proved to be lysed by anti-D CTLs.
Again, following the protocols set forth for isolation of antigen -E precursor DNA, the F- variant was transfected with genomic DNA from F cell line MZ2-MEL3.0. The experiments yielded 90,000 drug resistant transfectants.
These were tested for MZ2-F expression by using pools of cells in the TNF detection assay elaborated upon supra.
One pool stimulated TNF release by anti-F CTLs, and was cloned. Five of 145 clones were found to stimulate antiil WO 92/20356 PC/US92/04354 47 F CTLs. Lysis assays, also following protocols described supra, confirmed expression of the gene coding for antigen F, and (ii) presentation of antigen F itself.
Example 28 Following identification of F cell lines, the DNA therefrom was used to transfect cells. To do this, a cosmid library of F+ cell line MZ2-MEL.43 was prepared, again using the protocols described supra. The library was divided into 14 groups of about 50,000 cosmids, and DNA from each group was transfected into MZ2-MEL2.2.5.
Transfectants were then tested for their ability to stimulate TNF release from anti-F CTL clone 76/6. Of 14 groups of cosmids, one produced two independent transfectants expressing antigen F; a yield of two positives out of 17,500 geniticin resistant transfectants.
Example 29 The existence of a gene family was suggested by the pattern observed on the Southern blot (Figure 12). To do Sthis, the 2.4 kb BamHI fragment, which transferred the expression of antigen M22-E, was labelled with 32p and used as a probe on a Southern Blot of BamHI digested DNA of E cloned subclone M22-MEL2.2. Hybridization conditions included 50 Al/cm 2 of 3.5xSSC, IxDenhardt's solution; 25 mM sodium phosphate buffer (pH 0.5% SDS, 2mM EDTA, where the 2.4 kb probes had been labelled with [a32pJdCTP (2-3000 i ni j111 .i -rn11,11 L-f- r-fl rr lr WO 92/20356 PCT/US92/04354 48 Ci/mole), at 3x10 6 cpm/ml. Hybridization was carried out for 18 hours at 65 0 C. After this, the membranes were washed at 65 0 C four times for one hour each in 2xSSC, 0.1% SDS, and finally for 30 minutes in 0.1xSSC, 0.1% SDS. To identify hybridization, membranes were autoradiographed using Kodak X-AR film and Kodak X-Omatic fine intensifying screens.
In the following examples, whenever "hybridization" is referred to, the stringency conditions used were similar to those described supra. "Stringent conditions" as used herein thus refers to the foregoing conditions; subject to routine, art recognized modification.
Example The cDNA coding for mage 4 was identified from a sample of the human sarcoma cell line LB23-SAR. This cell line was found to not express mage 1, 2 or 3, but the mRNA of the cell line did hybridize to the 2.4 kb sequence for mage 1. To study this further, a cDNA library was prepared from total LB23-SAR mRNA, and was then hybridized to the 2.4 kb fragment. A cDNA sequence was identified as hybridizing to this probe, and is identified hereafter as mage 4.
Example 31 Experiments were carried out using PHA-activated lymphocytes from patient "MZ2", the source of the "MZ" cells discussed supra. An oligonucleotide probe which m WO 92/20356 PCT/US92/04354 49 showed homology to mage 1 but not mage 2 or 3 was hybridized with a cosmid library derived from the PHA activated cells. The size of the hybridizing BamHI cosmid fragment, however, was 4.5 kb, thus indicating that the material was not mage 1; however, on the basis of homology to mage 1-4, the fragment can be referred to as "mage The sequence of MAGE 5 is presented in SEQ ID NO: 16.
Example 32 Melanoma cell line LB-33-MEL was tested. Total mRNA from the cell line was used to prepare cDNA, which was then -I amplified with oligos CH09: (ACTCAGCTCCTCCCAGATTT), and (GAAGAGGAGGGGCCAAG). These oligos correspond to regions of exon 3 that are common to previously described mage 1, 2 and 3.
To do this, 1 Ag of RNA was diluted to a total volume of 20 Ml, using 2 p4l t lox PCR buffer, 2 Al of each of mM dNTP, 1.2 p1 of 25 mM MgCl 2 1 p1 of an 80 mM solution of CHO9, described supra, 20 units of RNAsin, and 200 units of M-MLV reverse transcriptase. This was followed by incubation for 40 minutes at 42 0 C. PCR amplification Sfollowed, using 8 tl of 10x PCR buffer, 4.8 4l of 25 mM MgC12, 1 4l of CHO10, 2.5 units of Thermus acquaticus polymerase, and water to a total volume of 100 l1.
Amplification was then carried out for 30 cycles (1 minute 94 0 C; 2 minutes at 52°C, 3 minutes at 72 0 Ten 41 of each reaction were then size fractionated on agarose gel, r WO 92/20356 PCT/US92/04354 followed by nitrocellulose blotting. The product was found to hybridize with oligonucleotide probe CHO18 (TCTTGTATCCTGGAGTCC). This probe identified mage 1 but not mage 2 or 3. However, the product did not hybridize to probe SEQ 4 (TTGCCAAGATCTCAGGAA). This probe also binds mage 1 but not 2 and 3. This indicated that the PCR product contained a sequence that differed from mage 1, 2 and 3. Sequencing of this fragment also indicated differences with respect to mage 4 and 5. These results indicate a sequence differing from previously identified mage 1, 2, 3, 4 and 5, and is named mage 6.
Example 33 In additional experiments using cosmid libraries from PHA-activated lymphocytes of MZ2, the 2.4 kb mage 1 fragment was used as a probe and isolated a complementary fragment. This clone, however, did not bind to oligonucleotides specific for mage 1, 2, 3 or 4. The sequence obtained shows some homology to exon 3 of mage 1, and differs from mages 1-6. It is referred to as mage 7 hereafter. Additional screenings yielded mage 8-11.
Example 34 The usefulness of the TRAPs, as well as TRAs derived therefrom, was exemplified by the following.
Exon 3 of ;age 1 was shown to transfer expression of antigen E. As a result, it was decided to test whether WO 92/20356 PCT/US92/04354 51 synthetic peptides derived from this exon 3 could be used to confer sensitivity to anti-E CTL.
To do this, and using standard protocols, cells normally insensitive to anti-E/CTLs were incubated with the synthetic peptides derived from Exon 3.1. Using the CTL lytic assays described supra on P815A, and a peptide concentration of 3 mM, the peptide Glu-Ala-Asp-Pro-Thr- Gly-His-Ser-Tyr was shown to be best. The assay showed lysis of 30%, indicating conferring of sensitivity to the anti-E CTL.
Example Nucleic acid sequences referred to as "smage" were isolated from murine cells. Using the protocols described supra, a cosmid library was prepared from the DNA of normal DBA/2 kidney cells, using cosmid vector C2RB. As a probe, the 2.4 kb BamHI fragment of MAGE-1 was used. The DNA was blotted to nylon filters, and these were washed in 2xSSC at 0 C to identify the smage material.
SExample 36 Further tissue samples were tested for the presence of MAGE genes, using the protocols discussed supra. Some of these results follow.
There was no expression of the MAGE genes in brain or kidney tumor tissue. Colon tumor tissue showed expression of MAGE 1, 2, 3 and 4, although not all tumors tested showed expression of all MAGE genes. This is also true for WO 92/20356 PCT/US92/04354 52 pancreatic tumor (MAGE non-small cell lung (MAGE 1, 2, 3 and prostate (MACE sarcomas (MAGE 1, 2, 3 and 4), breast (MAGE 1, 2 and and larynx (MAGE 1 and 4).
The foregoing disclosure, including the examples, places many tools of extreme value in the hands of the skilled artisan. To begin, the examples identify and provide a iLethodology for isolating nucleic acid molecules which code for tumor rejection antigen precursors as well as the nucleic acid molecules complementary thereto. It is known that DNA exists in double stranded form, and that each of the two strands is complementary to the other.
Nucleic acid hybridization technology has developed to the Spoint where, given a strand of DNA, the skilled artisan can I isolate its complement, or synthesize it.
"Nucleic acid molecule" as used herein refers to all it species of DNA and RNA which possess the properties 1 discussed supra. Genomic and complementary DNA, or "cDNA" Sboth code for particular proteins, and as the examples directed to isolation of MAGE coding sequences show, this disclosure teaches the artisan how to secure both of these.
Similarly, RNA molecules, such as mRNA can be secured.
Again, with reference to the skilled artisan, once one has a coding sequence in hand, mRNA can be isolated or synthesized.
Complementary sequences which do not code for TRAP, such as "antisense DNA" or mRNA are useful, in r WO 92/20356 PCT/US92/04354 53 probing for the coding sequence as well as in methodologies for blocking its expression.
It will also be clear that the examples show the manufacture of biologically pure cultures of cell lines which have been transfected with nucleic acid sequences which code for or express the TRAP molecules. Such cultures can be used as a source for tumor rejection antigens, or as therapeutics. This aspect of the invention is discussed infra.
Cells transfected with the TRAP coding sequences may also be transfected with other coding sequences. Examples of other coding sequences include cytokine genes, such as interleukins IL-2 or IL-4), or major histocompatibility complex (MHC) or human leukocyte antigen (HLA) molecules. Cytoy ne gene transfection is of value because expression of these is expected to enhance the therapeutic efficacy of the biologically pure culture of the cells in vivo. The art is well aware of therapies where interleukin transfectants have been administered to subjects for treating cancerous conditions. In a particularly preferred embodiment, cells are transfected with sequences coding for each of a TRAP molecule, (ii) an HLA/MHC molecule, and (iii) a cytokine.
Transfection with an MHC/HLA coding sequence is desirable because certain of the TRAs may be preferentially or specifically presented only by particular MHC/HLA molecules. Thus, where a recipient cell already expresses the MHC/HLA molecule associated with presentation of a TRA, i WO 92/20356 PCT/US92/04354 54 additional transfection may not be necessary although further transformation could be used to cause overexpression of the antigen. On the other hand, it may be desirable to transfect with a second sequence when the recipient cell does not normally express the relevant MHC/HLA molecule. It is to be understood, of course, that transfection with one additional sequence does not preclude H further transfection with other sequences.
The term "biologically pure" as used in connection with the cell line described herein simply means that these are essentially free of other cells. Strictly speaking, a "cell line" by definition is "biologically pure", but the recitation will establish this fully.
Transfection of cells requires that an appropriate vector be used. Thus, the invention encompasses expression vectors where a coding sequence for the TRAP of interest is operably linked to a promoter. The promoter may be a strong promoter, such as those well known to the art, or a differential promoter, one which is operative only in specific cell types. The expression vectors may also contain all or a part of a viral or bacterial genome, such as vaccinia virus or BCG. Such vectors are especially useful in preparing vaccines.
The expression vectors may incorporate several coding sequences, as long as the TRAP sequence is contained therein. The cytokine and/or MHC/HLA genes discussed supra may be included in a single vector with the TRAP sequence.
Where this is not desired, then an expression system may be
L_
WO 92/20356 PCT/US92/04354 provided, where two or more separate vectors are used where each coding sequence is operably linked to a promoter.
Again, the promoter may be a strong or differential promoter. Co-transfection is a well known technique, and the artisan in this field is expected to have this technology available for utilization. The vectors may be constructed so that they code for the TRA molecule directly, rather than the TRAP molecule. This eliminates the need for post-translational processing.
As the foregoing discussion makes clear, the sequences code for "tumor rejection antigen precursors" ("TRAPs") which, in turn, are processed into tumor rejection antigens Isolated forms of both of these categories are described herein, including specific examples of each.
Perhaps their most noteworthy aspect is as vaccines for treating various cancerous conditions. The evidence points to presentation of TRAs on tumor cells, followed by the development of an immune response and deletion of the cells. The examples show that when various TRAs are administered to cells, a CTL response is mounted and presenting cells are deleted. This is behavior characteristic of vaccines, and hence TRAPs, which are processed into TRAs, and the TRAs themselves may be used, either alone or in pharmaceutically appropriate compositions, as vaccines. Similarly, presenting cells may be used in the same manner, either alone or as combined with ingredients to yield pharmaceutical compositions.
Additional materials which may be used as vaccines include WO 92/20356 PCT/US92/04354 56 isolated cells which present the TRA molecule on their surface, as well as TRAP fragments, mutated viruses, especially etiolated forms, and transfected bacteria.
"Fragments" as used herein refers to peptides which are smaller than the TRA, but which possess the properties required of a vaccine, as discussed supra. Another vaccine comprises or consists of complexes of TRA and HLA molecule.
Vaccines of the type described herein may be used preventively, via administration to a subject in an amount sufficient to prevent onset of a cancerous condition.
The generation of an immune response, be it T-cell or B-cell related, is characteristic of the effect of the presented tumor rejection antigen. With respect to the Bcell response, this involves, inter alia, the generation of antibodies to the TRA, which specifically bind thereto. In addition, the TRAP molecules are of sufficient size to render them immunogenic, and antibodies which specifically bind thereto are a part of this invention.
These antibodies may be polyclonal or monoclonal, the latter being prepared by any of the well recognized methodologies for their preparation which need not be repeated here. For example, mAbs may be prepared using an animal model, a Balb/C mouse or in a test tube, using, EBV transformants. In addition, antiserum may be isolated from a subject afflicted with a cancerous condition where certain cells present a TRA. Such WO 92/20356 PCT/US92/04354 57 interaction of TRA and HLA/MHC molecules.
Review of the foregoing disclosure will show that there are a number of facets to the system which may be referred to as "tumor rejection antigen presentation and recognition". Recognition of these phenomena has diagnostic consequences. For example, the existence of specific CTL clones, or antibodies to the TRA makes it possible to diagnose or monitor cancerous conditions a subject, binding of antibodies to TRAs, or the activity of anti-TRA CTLs in connection with subject samples.
i Similarly, the expression of nucleic acid molecules for I TRAPs can be monitored via amplification "polymerase j 3 chain reaction"), anti-sense hybridization, probe technologies, and so forth. Various subject samples, including body fluids (blood, serum, and other exudates, tissues and tumors may be so assayed.
A particular manner of diagnosis is to use an adaptation of the standard "tuberculin test" currently used for diagnosis of tuberculosis. This standard skin test administers a stable form of "purified protein derivative" or "PPD" as a diagnostic aid. In a parallel fashion, TRAs in accordance with this invention may be used in such a skin test as a diagnostic aid or monitoring method.
The term "cancerous condition" is used herein to embrace all physiological events that commence with the initiation of the cancer and result in final clinical WO 92/20356 PCT/US92/04354 58 manifestation. Tumors do not spring up "ab initio" as visible tumors; rather there are various events associated with the transformation of a normal cell to malignancy, followed by development of a growth of biomass, such as a tumor, metastasis, etc. In addition, remission may be conceived of as part of "a cancerous condition" as tumors seldom spontaneously disappear. The diagnostic aspects of this invention include all events involved in carcinogenesis, from the first transformation to malignancy of a single cell, through tumor development and metastasis, as well as remission. All are embraced herein.
SWhere "subject" is used, the term embraces any species iwhich can be afflicted with a cancerous condition. This i includes humans and non-humans, such as domesticated animals, breeding stock, and so forth.
There are therapeutic aspects of this invention as well. The efficacy of administration of effective amounts of TRAPs and TRAs as vaccines has already been discussed supra. Similarly, one may develop the specific CTLs in vitro and then administer these to the subject. Antibodies may be administered, either polyclonal or monoclonal, which specifically bind to cells presenting the TRA of interest.
These antibodies may be coupled to specific antitumor agents, including, but not being limited to, methotrexate radio-iodinated compounds, toxins such as ricin, other cytostatic or cytolytic drugs, and so forth. Thus, "targeted" antibody therapy is included herein, as is the WO 92/20356 PCT/US92/04354 59 application of deletion of the cancerous cells by the use of CTLs.
The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, it being recognized that various modifications are possible within the scope of the invention.
jis WO 92/20356 PCY/US92I04354 GENERAL INFORMATION: APPLICANTS: Boon, Thierry, Van den Eynde, Benoit (ii) TITLE OF INVENTION: Isolated And Purified DNA Sequence Coding Antigen Expressed By Tumor Cells And Recognized By Cytotoxic T Cells, And Uses Thereof (iii) NUMBER OF SEQUENCES: 26 (iv) CORRESPONDENCE ADDRESS: ADDRESSEE: Felfe Lynch STREET: 805 Third Avenue CITY: New York City STATE: New York ZIP: 10022 COMPUTER READABLE FORM: MEDIUM TYPE: Diskette, 5.25 inch, 360 kb storage COMPUTER: IBM OPERATING SYSTEM: PC-DOS SOFTWARE: Wordperfect (vi) CURRENT APPLICATION DATA: APPLICATION NUMBER: FILING DATE: (vii) PRIOR APPLICATION DATA: APPLICATION NUMBER: 07/807,043 FILING DATE: 12-DECEMBER-1991 (vii) PRIOR APPLICATION DATA: APPLICATION NUMBER: 07/764,364 FILING DATE: 23-SEPTEMBER-1991 (vii) PRIOR APPLICATION DATA: APPLICATION NUMBER: 07/728,838 FILING DATE: 9-JULY-1991 (vii) PRIOR APPLICATION DATA: APPLICATION NUMBER: 07/705,702 FILING DATE: 23-May-1991 (viii) ATTORNEY/AGENT INFORMATION: NAME: Hanson, Norman D.
REGISTRATION NUMBER: 30,946 REFERENCE/DOCKET NUMBER: LUD 253.4 (ix) TELECOMMUNICATION INFORMATION: TELEPHONE: (212) 688-9200 TELEFAX: (212) 838-3884 SUBSTITUTE SHEET WO 92/20356 INFORMATION FOR SEQUENCE ID NO: 1: SEQUENCE CHARACTERISTICS: LENGTH: 462 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE% genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1: PCr/US92/04354
ACCACAGGAG
GAAGATCCTG
CAGCCAATGA
AAGTTTTGCA
CACGTA.AAAA
CCTCGTGCTG
AGAACTCTTC
CATGCATTGT
CTAGCTTGCG
ACCCTTTGTG
AATGAAAAGA
ATCACTCATT
GCTTACTGTT
AGTTCCGCCT
AGTAGTCCAG
TGCTGAGTTT
CGGAGGAAGG
GTCAACGCCA
ACTCTACTCT
cc
ACCCGGGACT
GGGTGTCTGA
CTCGTGGGGG
ACAGCTCTAG
AGTTTACTAC
AGAAGTCTTC
AGGGAGGACC
TTGCACTGAG
TATCTTAACT
CCCAAAGACG
GTTCTGCGAT
GTTTGTGAGC
CTTGTGAATT
ACCCTCCCTC
CTTATAGAAG
CCCCCCCTTT
CTGGTCGAAG
TAGCTCGGCT
CTAGATGTGT
ATTCATCCCT
CTTGGGTAGG
TGTACCCTTT
CCCCCTCCCA
TCTTCCGTAT
GCTCTCCCAG
AAGTAAGCCG
TCCTGCTGGT
so 100 150 200 250 300 350 400 450 462 t i 4 11 SUBSTITUTE SHEET p WO 92/20356 PCr/US92/04354 INFORMATION FOR SEQUENCE ID NO: 2: SEQUENCE CHARACTERISTICS: LENGTH: 675 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: ATG TCT GAT AAC AAG AAA CCA GAC AAA GCC CAC AGT GOC TCA Met Ser Asp Asn Lys Lys Pro Asp Lys Ala His Ser Gly Ser GGT GGT Gly Gly GAC GGT GAT GGG AAT AGG Asp Gly Asp Gly Asn Arg TGC AAT TTA Cys Asn Leu 25 TTG CAC COG TAC Leu His Arg Tyr TCC CTG GAA Ser Leu Olu GAA ATT CTG Glu Ile Leu CCT TAT CTA 000 Pro Tyr Leu Gly CTG GTC TTC OCT GTT GTC ACA ACA Leu Val Phe Al.a Val Val Thr Thr AOT TTT Ser Phe so CTG OCO CTC CAG ATO TTC ATA GAC GCC Leu Ala Leu Oln Met Phe Ile Asp Ala TAT GAG GAG CAG Tyr Glu Olu Gln
TAT
Tyr GAA AGG GAT GTO Glu Arg Asp Val TGG ATA 0CC AGO Trp Ile Ala Arg CAA AGC AAG CGC Gln Ser Lys Arg GAT GAG GAT GAC Asp 0Th Asp Asp
ATG
Met TCT GTC GAT GAG Ser Val Asp Glu GAA GAC OAT GAG Olu Asp Asp Glu TAC TAC Tyr Tyr GAC GAC GAG Asp Asp Glu GAG GAA GAA Glu Glu Glu 115 GAC GAC GAC OAT Asp Asp Asp Asp TTC TAT GAT OAT Phe Tyr Asp Asp GAG OAT OAT Olu Asp Asp 110 OAA OAT GAO Glu Asp Olu GAA TTO GAG AAC Glu Leu Olu Asn ATO OAT OAT OAA Met Asp Asp Olu 0CC GAA Ala Glu 130 GAA GAO ATO AOC Olu Olu Met Ser OAA ATG GOT GCC Glu Met Gly Ala
GT
Gly 145 OCT GOC OCT AAC Ala Oly Ala Asn 0CC TOT OTT CCT Ala Cys Val Pro GGA OCT GAG GAA ATG oly Ala Glu Olu Met 140 CAT CAT TTA AGO AAG, His His Leu Arg Lys 160 CAC GAC CCT AAT TTC His Asp Pro Asn Phe 175 AAT OAA OTO AAG Asn Olu Val Lys TOT AG4 ATO ATT Cys Arg Met Ile 165 TAT TTC TTC Tyr Phe Phe 170 SUBSTITUTE SHEET WO 92/20356 WO 9220356PC1'/US92/04354 CTG GTG TCT ATA CCA GTG AAC CCT AAG GAA CAA ATG GAG TGT AGG TGT Leu Val Ser Ile Pro Val Asn Pro Lys Glu Gin Met Glu Cys Arg Cys 180 183 190 GAA AAT GCT GAT GAA Glu Asri Ala Asp Glu 195 GAG GTT GCA ATG GAA Glu Val Ala Met Glu 200 GAG GAA GAA GAA GAA GAG Glu Glu Glu Glu Glu Glu 210 GAG GAG GAG GAG GAA GAG GAA ATG GGA AAC CCG GAT GGC TTC TCA CCT Glu Glu Giu Glu Glu Glu Glu Met Gly Asn Pro Asp Gly Phe Ser Pro 220 225 230 235
TAG
SUBSTITUTE SHEET WO 92/20356 WO 9220356PCV'US92/04354 INFORMATION F *OR SEQUENCE ID NO: 3: SEQUENCE CHARACTERISTICS: LENGTH: 228 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3: GCA'TGCAGTT GCAAAGCCCA GAAGAAAGAA ATG47ACAGCG GAAGAAGTGG TTGTTTTTTT TTCCCCTTCA TTAATTTTCT AGTT'm C T i-ATC.CAGAAA ATTTGATTTT GTTCTAAAGT TCATTATGCA AAGATGTCAC CAACAGACTT CTL~ACTGCAT GGTGAACTTT CATATGATAC ATAGGATTAC ACTTGTACCT GTTAAAAATA AAAGTTTGAC TTGCATAC SUBSTITUTE
SHE~ET
I
WO 92/20356 PCT'/US92/04354 INFORMATION FOR SEQUENCE ID NO: 4: SEQUENCE CHARACTERISTICS: LENGTH: 1365 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4: ACCACAGGAG AATGAAhAGA GAAGATCCTG ATCACTCATT CAGCCAATGA OCTTACTGTT AAGTTTTGCA AGTTCCGCCT CACGTAAAAA AGTACTCCAG CCTCGTGCTG TGCTGAGTTT AGAACTCTTC CGGAGGAAG CATGCATTOT OTCAACGOCA CTAGCTTGCG ACTCTACTCT ACCCTTTGTG CC
ACCCGGGACT
GGGTGTCTGA
CTCGTGGGGG
ACAGCTCTAG
AGTTTACTAC
AGAAGTCTTC
AGGGAGGACC
TTGCACTGAG
TATCTTAACT
CCCAAAGACG
GTTCTGCGAT
GTTTGTGAGC
CTTGTGAATT
ACCCTCCCTC
CTTATAGAAG
CCCCCCCTTT
CTGGTCGAAG
TAGCTCGGCT
CTAGATGTGT
ATTCATCCCT
CTTGGGTAGG
TGTACCCTTT
CCCCCTCCCA
TCTTCCCTAT
CCTCTCCCAG
AAGTAAGCCG
TCCTGCTGGT
1., ATG TCT GGT COT TAC TCC TTC GCT ATA GAC TOG ATA GAT GAA GAG GAC GAG CAA CAT GAG OCT GAG GGC CAT TAT TTC AAC CCT GAA GAG GAG GAG
GAT
GAC
CTG
OTT
CC
GCC
GAC
GAC
GAA
CC
GAA
CAT
TTC
AAG
GT'I
CAA
AAC
GGT
OAA
OTC
CTT
AG
GAT
GAC
GAA
AAA
G
ATT
ACA
GAG
AGC
CAT
CAT
GAG
CAC AAA AGO TGC CCT TAT TTT CTO CAC TAT CGC ATG GAG CAT TTC TAT CTO ATO ACC OTO OCT AAC CAA OTO TTC CTG TGT AGO GAA GAA
CAC
TTA
G
CTC
AGO
TCT
TAC
CAT
CAT
ATG
CC
TOT
TCT
OAA
GAA
ACT
TTC
TOO
CAG
CAT
GTC
TAC
GAG
OAA
OCT
TO-T
AGO
ATA
AAT
GAG
TCA
CGC
GTC
TTC
CC
GAG
GAC
CAT
GAA
GGA
CCT
ATT
OTO
CAT
GAG
CAA CAA GAO ATG GOT OCT TTA AGO, AAO CAC GAC CCT OAA CAA ATO OCA ATO OAA GAO CAA ATO GCAAAGCCCA G TTCCCCTTCA T GTTCTAA.AGT Ti GGTGAACTTT C.
AAAOTTTOAC T 504 546 588 630 672 714 756 798 840 882 924 966 1008 1050 1092 1134 1137 1187 1237 1287 1337 1365 AAC CCC CAT CCC TTC TCA CCT
TAG
CCATGCACTT
TTGTTTTTTT
ATTTCATTTT
CTOACTCCAT
GTTAAAAATA
PAOGAAAGAA ATOGACAC TAATTTTCT AGTTTTTAOT CATTATOCA AAOATGTCAC PTATCATAC ATAGGATTAC
TGCATAC
CAACAACTCO
AATCCAOAAA
CAACAGACTT
ACTTGTACCT
SUBSTITUTE SHEET WO 92/20356 INFORMATION FOR SEQUENCE ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 4698 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: PCT/US92/04354 ACCACAGGAG AATGAAAAGA ACCCGGGACT
GAAGATCCTG
CAGCCAATGA
AAGTTTTGCA
CACGTAAAAA
CCTCGTGCTG
AGAACTCTTC
CATGCATTGT
CTAGCTTGCG
ATCACTCATT
GCTTACTGTT
AGTTCCGCCT
AGTAGTCCAG
TGCTGAGTTT
CGGAGGAAGG
GTCAACGCCA
ACTCTACTCT
GGGTGTCTGA
CTCGTGGGGG
ACAGCTCTAG
AGTTTACTAC
AGAAGTCTTC
AGGGAGGACC
TTGCACTGAG
TATCTTAACT
CCCAAAGACG
GTTCTGCGAT
GTTTGTGAGC
CTTGTGAATT
ACCCTCCCTC
CTTATAGAAG
CCCCCCCTTT
CTGGTCGAAG
TAOCTCGGCT
CTAGATGTGT
ATTCATCCCT
CTTGGGTAGG
TGTACCCTTT
CCCCCTCCCA
TCTTCCGTAT
GCTCTCCCAG
AAGTAAGCCG
TCCTGCTGGT
ACCCTTTGTG CC ATG TCT GAT OGT GGT GAC TAC TCC CTG TTC GCT GTT ATA GAC GCC TGG ATA GCC GAT GAA GAC GAG GAC GAC GAG GAA GAP GAT GAG GCC GCT GAG GAP~
GTGAGTAACC
CTCTTGCCCA
TGGAGCCATT
CCCCACTCCT
TTCAGTCCAT
TCCCCCTCGO
TTCAGGCTTC
CCTTTTCGCG
TCACCAGCTT
TCCTGCTCCC
CTACCTGCTT
TGCTCCTCCC
CCTCCCTCCC
TTGGTTTTTC
TCACTCTGTA
CCTCCCAAAT
GCCTTTCTTT
AACTCCCCTT
TTCCCTTCCG
CCTCCCCCTC
GCCCCGTTCC
AGCTCACCTT
TTTTTTTTTT
CCTCTGTGTG,
AAC
GGT
GAA
OTC
CTT
AGO
OAT
GAC
OAA
GAA
ATG
AAG
OAT
GAA
ACA
TAT
CAA
GAG
GAC
TTG
GAA
GGT
AAA
GG
ATT
ACA
GAG
AOC
GAT
OAT
GAG
GAG
GCT
GAC
AGO
CCT
TTT
CAG
CGC
GAG
TTC
CTG
AGC
OCT
AAA
TOC
TAT
CTG
TAT
ATG
GAT
TAT
ATG
OTO
AAC
AGT GGC TTG CAC TGG CTO CAG ATO OAT GTG GTC GAT TAC GAC GAG GAT OAA TCA OGT GCC
T
CGTOGTCTTT
CATCTGTAGT
CCTGOCTCTC
TGCTCCGCTC
CCTGCTCTGC
CTCAACTTTT
CCCATTTGCT
CCTTTTCTTT
TOCTCTCCCT
CTCCCCCTCC
CCCTCCCCCT
TCCCCCTCCC
CCTCCCCAG
GAGACAGGGT
GACCAGGCTG
GCTGGGATTA
TTTCTCCTCT
TTGGCACCTT
GCACCCTTCC
TTTC" ."CGAC
CCTTTTTTGT
TTTGTTTGTT
GCACCTTGTT
CCTTTCCTGT
ACTCTAGATT
AAAGACCACA
CTOTCCACGC
TCTTTCCTTT
TCCCTTTCCC
CGTGCCTTCT
CCTCTCCCOA
CCTGCTCCCC
GCTCCCCTCC
CCTCCCTOTT
TGCTGCTCCC
CCTCCCTCCC
CCTTTTTTTT
TTCTCTTTGT
GCCTCAAACT
AAGGCTTGCA
CTGGTCTCCC
TCCTTTACAG
TAGCCCTGCT
.TTTTAGCAGC
GCCTTTCCTC
TGGTTGTTTG,
TTCCAAGATC
TCCCTCCCCC
CAGGTGGOGT
TTTTGGTTOG
CTATCCCCGC
TCCCACCTTG
CTTTOCTCTC
OCTCTCTGAT
AACCCTCCCC
TCCCCCTCCC
CCCTTTTOCA
TACCCTTCAC
TCCCTATTTG
TATTTGCATT
TTTTTTTTTT
ATCCCTGGCT
CAGAAATCTG
CCAGGACTGC
TAATCCCTTT
GACCCCCTCC
CTGTTCCCTC
CTTACCTCTC
CTGGCTCCCC
GTTGTTTGGT
CCCCTCCCCC
TCGCTGGCTC
GCATTCTTTA
GTCATTGC
TCCTCCCATC
CCTCTGGAGC
CTTGCTCCCC
CCC CACCCTC
TTCCTOTTCC
TATTTACCTT
CCTTTTCTTT
CGCTTTTCCT
CATTTTCGGG
TTCGGGTGCT
TTTTTTTTTT
GTCCTGGCAC
CCTGCCTCTG
CCCAGTGCAG
TCTGCATGTT
CCCTCCCTGT
TCCCTGCTCC
CCTGCTTTCT
TCCACCTTCC
TTGCTTTTTT
TCCGGCTTCC
CCCCTCCCTT
504 546 588 630 672 714 756 798 840 882 916 966 1016 1066 1116 1166 1216 1266 1316 1366 1416 1466 1516 1566 1616 1666 1716 1766 1816 1866 1916 1966 2016 2066 2116 SUBSTITUTE SHEET 4 WO 92/20356 PCr/US92/04354
TCTGCCTTTC
CTTTTCTAGA.
CCTGACCCTG
CCTTTCTCCA
TCCTGCTTCC
GACTTCCTCT
CTCTCTGTCC
ATGTGTCTCT
CCATCACCTC
CCTGCTTCTT
TCCATGTCCC
ATTTCCCTCT
TTCCCTTTGC
TACTTGATCT
CTTTGTCCCC
ATCAACAACA
AAGGCTGGAT
AAGTGGCTCC
CTTGATCCTT
CAGGCCATGC
GAATCTGAAA
TAGTGATATT
TCCTTCTACA
GGCTAAAGAT
TTGCTAAAAT
GT GTT CC'I AGG ATG ATI ATA CCA GTC AAT GCT GAI GAG GAG GAG.
TTC TCA CCI
GCATGCAGGT
GCTAAGAGCA
TCTTTTTACA
CCCTAAGTTA
GTAGTGAGAC
GACCAGTAAA
TTCTTATAGT
TTCAAGAAAG
TTCTGATTTT
CTTAAAATTT
TAGAATTCAA
AATGTTTTTT
GTAACTGGOG
GTTCTGGTCT
CAGTAGGTTA
ATAAATACTC
ATTTTAGTTT
AGTCAGGAGT
AGTTGCAAAG
TTTTTTCCCC
TTTTGTTCTA
GCATGGTGAA
AATAAAAGTT
CTGTCCCTGC
CTCCCCCCTC
CTCCCCTTCC
GCCTGTCACC
TTTACCCCTT
CCAGCCGCCC
ATCACTTCCC
CTTCCTATCT
TCTCCTCCCT
TACCCTGCCT
CTCTCAATTC
TTCTCCCTTA
TTCTCCCTCC
TCTCTCCTCT
AGACCCTACA
AGGAGGCAAG
GAAAATAAGG
TATAACCCTA
GCTGCTTCTT
TCCATGCTTG
ACTAGGGGCC
TCCCCCTAAA
GGTGAGAAGT
ACTTGGAACC
ATTCTTTCTC
GGC CAT Cl TAT TTC TJ AAC CCT Al GAA GAG GIJ GAG GAG GI
TAG
ACTGGCTTCA
TCTTTTTAAA
TTAATAAGTA
AACAGAAGTC
TACTTACTAC
AGATCATGCA
ACCTTTGAGA
ATCACACGCC
TTTCATTTCT
CCTTCATCTT
TTCAAATTCT
AAAAAAAATG
GGCTTAGGGA
CTGAGAAGCA
GTGAGGTTGA
TAACAGCTAA
CTCCTTGAGA
GTATTCTAAT
CCCAGAAGAA
TTCATTAATT
AAGTTCATTA
CTTTCATATG
TGACTTGCAT
TCCCTTCTCT
CAGGCTTGCT
CCTCCCAGCT
CCTCCTTCTC
CCCTCTCCCT
AGTTCCCTGC
CCTAGTTTCA
ATCCCTTCCT
TCCCTTTCCT
CTCCCATTGC,
CCTGTCCCAT
GCCTCTTCTT
TCCTTTCCCC
CCACATACCC
GTATCCTGTG
AAACAGAGCA
CCAGGTTCTG
AGTACCAAGG
TTACATATGT
GCGCTTGCTC
AGTGGTTTGT
AATTATAACA
GGAAAAATTG
ATAGAAGCGT
ACATATTCAT
~T TTA AGG ~C CAC GAC ~G GAA C.AA ~T GCA ATG A GAG GAA
CTAACCAACC
AAATATTATT
TTAAATTAAT
AATGATGTCT
AGATGAGAAG
GTGAAATGTG
CAGCTGATAA
ATGGTTCACA
AGACCTGTGG
TAATTTTCCT
TAATTCAATC
CAAATCTCAT
ATCTGTAGGG
GTCAGAGAGA
TATGATCAGA
GGATCTCTGA
AACAATGACA
AAGTGTTGCT
AGAAATGGAC
TTCTAGTTTT
TGCAAAGATG
ATACATAGGA
AC
GCTAACCTTT
GTTTGCTTCT
CCCCCCTCTT
TCCTCTCTGT
ACTCTCCTCC
AGTCCTGGAG
CTTCCCTTTC
TTCTGTCCCC
CTCTCTTCCA
CCTCTTACCT
TGTGCTCCCT
CCTCTTCTCT
TTCCCCTATG
TTTTTCCTTT
CACAGGAAGT
AAATCCCAAA
AGGACAGCTG
GAGAAAGTGA
TGGCACATCT
AGCGTGGTTA
TTTGGGGACA
AACAGATTCA
TCACTATGAA
TGTTAAAATA
ATTCTCCAG
AG AAT GAA ,CT AAT TTC MT GAG TGT ;AA GAG GAA k.TG GGA AAC
TAATGCCTTT
GTGCACTTTT
TTCCCACCTC
TTCTCCCACT
CTGCCTGCTG
TCTTTCCTGC
ACTCTCCCCT
TCTCCTCTGT
TTTTCTTCCA
TTATGCCCAT
CACATCTTCC
TGTATCTCCC
CCCTCTACTC
CCACCCTGCC
GGGAGGTGCC
ATCAGCAGGA
GAATCTAGCC
TGGTGAAGTT
TTCTCAAATG
AGTAATGGGA
AATTAGCACG
TGATTTGAGA
GTTCTTTTTA
CTGCTTTCTT
AAG TGT GTG TCT TGT GAA GAA GAA GAT GGC 2166 2216 2266 2316 2366 2416 2466 2516 2566 2616 2666 2716 2766 2816 2866 2916 2966 3016 3066 3116 3166 3216 3266 3316 3355 3396 3438 3480 3522 3564 3576 3626 3676 3726 3776 3826 3876 3926 3976 4026 4076 4126 4176 4226 4276 4326 4376 4426 4476 4526 4576 4626 4676 4698
ATTCCTAACA
GGTAAACTAA
CCAGTATACA
AGATGCCTGT
TTGTTAGACT
GCCATGGAAA
CAGCTGACAA
TGCAAATTAT
TTTTAAAGAG
TAACTTTAGT
TTAATTTTTA
TTTTAAGAGA
TTGCGGTATA
ATGGAAAACC
TTATGGACAC
GGGAAACACA
AGACATAAAA
TATCTCTTAT
AGCGGAAGAA
TAGTAATCCA
TCACCAACAG
TTACACTTGT
TATGCCTGTA
ACAATTGTTA
GTTTTAAGAA.
TCTTTAGATT
CGGGAGTAGA
TCGCATATTG
AAATAAGTGT
TATTTTGTCG
ATGAAAATCT
TTTTTTCACT
GATTTCTTAA
TGAAAGCAGA
GCAATAGGGA
AGGCCCTTGC
TCTCCAAATC
ACAGGGAAAT
TTGGCAAGAA
TTTCTTCTAC
GTGGTTGTTT
GAAAATTTGA
ACTTCTGACT
ACCTGTTAAA
SUBSTITUTE SHEET
A
r PCT/US92/04354 WO 92/20356 INFORMATION FOR SEQUENCE ID NO: 6: SEQUENCE CHARACTERISTICS: LENGTH: 9 amino acids TYPE: amino acid TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 6: Leu Pro Tyr Leu Gly Trp Leu Val Phe SUBSTITUTE SHEET i- WO 92/20356 PCr/US92/04354 INFORMATION FOR SEQUENCE ID NO: 7: SEQUENCE CHARACTERISTICS: LENGTH: 2418 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 7: GGATCCAGGC CCTGCCAGGA GGGGTCATCC ACTGCATGAG GGCCCGTGGA TTCCTCTTCC TGGTCTGAGA CAGTATCCTC GCCAGCAGTG AATGTTTGCC CAGGACACAT AGGACTCCAC CCTGTAGAAT CGACCTCTGC VTTCCTCCTTC AGGTTTTCAG CTGGAGGCCA CAGAGGAGCA TTAGAGTCTC CAAGGTTCAG CTCTCCCCAG GCCTGTGGGT GCCTGCTGCC CTGACGAGAG ACTGCAAGCC TGAGGAAGCC GTGTGTGTGC AGGCTGCCAC CCTGGAGGAG GTGCCCACTG AGGGAGCCTC CGCCTTTCCC CCCAGTGAGG GTTCCAGCAG TATCCTGGAG TCCTTGTTCC TGGTTGGTTT TCTGCTCCTC GCAGAAATGC TGGAGAGTGT GATCTTCGGC AAAGCCTCTG TGAAGGAAGC AGACCCCACC GGTCTCTCCT ATGATGGCCT AGGCTTCCTG ATAATTGTCC CTCCTGAGGA GGAAATCTGG GGGAGGGAGC ACAGTGCCTA TTTGGTGCAG GAAAAGTACC CGCACGCTAT GAGTTCCTGT ATGTGAAAGT CCTTGAGTAT TTCTTCCCAT CCCTGCGTGA CTGAGCATGA GTTGCAGCCA ACCTTCCAGG GCCGCGTCCA SCCCATTCTTC ACTCTGAAGA TGTTCTATTG GGTGACTTGG TCAAATGTTT TTTTTTAAGG, TATGAATGAC AGCAGTCACA GTCTTGTGTT TTATTCAGAT ATAATAACAG CAGTGGAATA AAATAGATGA GATAAAGAAC CTTATACCTC AGTCTATTCT GATTTCCTTG, GCTTCTTTGA AATTCTTCCT GTTCACTGGC TTTTTGGAAG GCCCTGGGTT
AAAATATAAG
AGTGGGGATG
CAGGGCTGTG
TGGAGCTCCA
AGGTCACAGA
CTGAATGCAC
AGAGTCTGGC
TGGCCGGCTG
GGGACAGGCC
CCAAGGAGAA
TTCTCAGCTG
CTTCATTGCC
TCATCATGTC
CTTGAGGCCC
CTCCTCCTCC
CTGGGTCAAC
ACTACCATCA
CCGTGAAGAG
GAGCAGTAAT
AAATATCGAG
CATCAAAAAT
AGTCCTTdCA
GGCCACTCCT
GCTGGGTGAT
TGGTCATGAT
GAGGAGCTGA
TGGGGAGCCC
TGGAGTACGG
GGGGTCCAAG
GTGATCAAGG
AGCAGCTTTG
AGGCCAGTGG
GCAGCTTCCC
GAGCGGTCAG
AGATTTATCT
GATGGTTGAA
CAGTTCTGTG
TGGGAAATCC
AGTACTTAGA
TAAAGAAATT
GTAAAATTTT
GAATGTAAGA
TCTTTTCTTC
AGTAGTGGAG
GGCCCTGCGT
TCACAGAGTC
CTTGCGGTCT
GGAACCAGGC
GCAGAGGATG
ACCAAGGGCC
CTCACCTCCC
TACCCTGAGT
AACCCAGAGG
GATCTGTAAG
AGGCCTCTCA
CAGCTCCTGC
TCTTGAGCAG
AACAAGAGGC
TCTCCTCTGG
AGATCCTCCC
ACTTCACTCG
GAGGGGCCAA
CACTAAGAAG
CCAGGGAGCC
TACAAGCACT
GCTGGTCTTT
ATGTCCTTGT
AATCAGATCA
TGCAATGGAG
GTGTGATGGA.
AGGAAGCTGC
CAGGTGCCGG
GGCCCTCGCT
TCAGTGCAAG
AGAGAGGAGG
GAGGGGGACT
CTGCCTCGTG
TGTTCTCAGT
TTGTTCTCTT
TGAACTTCAG
TATATAGTTT
ATTCTATTTT
AATGTGAAAA
AAGAGATAGT
TAAAGATATA
GAAATTAAAT
TCCATG;CACT
ATGCTAAGGT
GAGAACAGAG
CAGCCCACCC
GCACCCTGAG
AGTGAGGCCT
CACAGGGTGT
CCACCTGCCA
TACTGTCAGT
ACCCTCTCAC
ACAGGATTCC
TAGGCCTTTG
CACACTCCCT
CCACACTCCT
AGGAGTCTGC
CCTGGGCCTG
TCCTGGGCAC
CAGAGTCCTC
ACAGAGGCAA
GCACCTCTTG
GTGGCTGATT
AGTCACAAAG
GTTTTCCTGA
GGCATTGACG
CACCTGCCTA
TGCCCAAGAC
GGCGGCCATG
GGTGTATGAT
TCACCCAAGA
ACAGTGATCC
GAAACCAGCT
AGTTCGCTTT
AAGAGGGAGT
GGGCCAGTGC
TGACATGAGG
AGTAGGTTTC
TTGGAATTGT
CATCCAAGTT
AAGGGTAAGA
GTGAATTGGG
ATGAGCAGTA
CAATTCTTGC
TGCATACCTG
CTGAATAAAG
GAGCATCTGC
AAGCCAGACT
100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1600 1650 1700 1750 1800 1850 1900 1950 2000 2050 2100 2150 2200 SUBSTITUTE SHEET -4
I-
WO 92/20356 WO 920356Pr/US92/04354
CATACCCACC
AGGTGGCAAG
GGGTGTGGGG
GGCATTTTGG
AATGATCTTG
CATAGGGTCG TAGAGTCTAG GAGCTGCAGT CACGTAATCG ATGTCCTCTA AAGATGTAGG GAAAAGTGAG AGAGGGGTGA CTCCGGGTGA GAGTGGTGGA GTGTCAATGC CCTGAGCTGG GCTTTGGGAA ACTGCAGTTC CTTCTGGGGG AGCTGATTGT
GGTGGATCC
2250 2300 2350 2400 2418 SUBSTITUTE SHEET WO 92/20356 PCr/US92/04354 INFORMATION FOR SEQUENCE ID NO: 8: SEQUENCE CHARACTERISTICS: LENGTH: 5724 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-1 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 8:
CCCGGGGCAC
TACGCCACCC
AGAATCCGGT
ATGTGACGCC
CGGTCTGAGG
TAAGGAGGCA
AGATAGAGGA
GGTGGACTTC
CTGGGGACTC
AGAGGGCAGC
AGGGCTGAGG
ATGCTCACTC
CCCCACATCC
ATTCCACCCT
CAGGCAGGAT
GCCACTGACT
AGGGACGGCG
AGGCAAGGTG
GAGAGCCCCA
CGCGGGAAGA
CCTTGAGAGA
TGTGACCAGG
GGCATCAAGA
ACTCCAATCC
CCCATCTCC7
CCTGACCACC
TCACCCTCAC
CCCATCGCC7
CCAGGGAAGC
AGATCTGAGP
ATCCACTGAC
CTGAGGGAGC
ATCCAGTACC
GTCTCAGCTC
GGCAATCTGJ
GGCAGGGCC(
ACCCTGGGA(
CACCGCCAC(
TCTTGTCAG]
CAGGCACTC(
GCTTGAACA(
GGGAGGCCT1
ACTGAGGCTI
CACTGGCATC
ATCCAAACAT
TCCACCCCTG
ACTGACTTGA
GGCGGCTTGA
AGGTGACATG
CCCCAAATAA
TCAGGCTGGG
GAAGTCAGAG
GTCCAGGCTC
GTCCCTAAGA
CCGTGACCCA
CCCACCCCAT
CACCCCCACC
CCGGTTCCCG
TGCGCATTGT
TAGAGTTCGG
AGAGGCTGAG
AATATTCCAG
CGTCTCAGCC
CACCAGGTTC
GCAGGACTGG
TCAGCACCCA
CCACTCCCAC
CAGCTACACC
ACCCTCCAGC
TGCCCCCAAC
CCCCCATTCI
CCTGGTAGGC
GAAGCCAGG
GGGAGTGGTJ
ACTGAGGAGC
ACCCCTGCT(
GACCACCCC(
AGTCATAGC'.
AGO CATCAA(
GGAACTGAGI
CCACTCACA'
k ATCCCTGCT1
GATCTTGAC,
SGGCCTCAGG,
AGAGGACCC
7CCACTTCTG
CCTCCCCCTA
CTTCACGCTC
CTCTCAACCC
GCATTAGTGG
GATCGGTGGA
CTGAGGGAGG
TCCCTTCATG
CCACCCCCAG
CTCCGTGTGA
TGCCAGACAT
CCCCACTCCC
ACCCCCTCTT
CCCTCAACCC
CCCACCCCCA
CCAGGAAACA
GGGGCAGAGA
CCGAAGGAAC
GGAGGACTGA
CCCCGCCCTT
TGGGCTGCCC
TTCTCCCCAA
TTAGGAGAGG
AGAGGGAGGG
*CCCATTCGCA
TCCACCCCCA
-CCCAGCACCA
CCCACCCTCA
7GGCAGAATCC
:CCGATGTGAP.
TCATTTAATG.
r' TTAGGCTCTC
;CACACACCCC
;CCAGCCCTG(
'CGTCCCGTCC
r' TATGTGACCC
GTCCAGCAT(
GTTCCCCACC
r TCCCATACC! aTCAACCCACC G TCCCCATCCJ G GAGCAGAGG4 A GCACCCTAG4 G CCTCAAGAA'
CCACCCCCAA
ACCCCCAGCC
AGGGAAGCCC
TTAGAGAGAA
GGGAAGCGGG
ACTGAGGACC
CCAGTCCTGG
CCCCCTTGCT
TCAGGGAAGG
CATGCTCAGG
GTGACCCAAC
CATTGTCATT
TGATGCCCAT
CGCCCACTCC
TCCGGGTGCC
GAAGCGAGGT
CTGACCCAGG
GGACCCCGCC
GCTGCCAGCC
CCAGACCCCT
GCTCTGGAAT
GCAGGGCACA
CTGTGGGCCC
TTCCCATTCC
*TCCCTACTCC
GCCCCAACCC
,TCTCTCTCA1
GGTTTGCCCC
ACCACTGACI
GTTCTGAGGC
TGAGGAGGCI
AGGTAGATGC
ACCACCCGG(
CACTGCCAC'
GG4GCAGGGT'
CGCCCGGCA
CACACCTGT(
V ACCCCCTACI GAAGCCACG4 k GGGTCTGAT1
;AGGGCCCTA,
;ACACCGCAC,
r CAGAACGAT,
TCCCTCCCTT
CAAGCCAGGC
AGGTGCCCAG
GCGAGGTTTT
CCCAGCTCTG
CACTTACCCC
ACCATCTGGT
GCTTAAACCA
GCTGCTTAGG,
ATTCTCAAGG
CCCCACTCCA
CCAACCCCCA
CCGCCCAGCC
CACCCCCACC
CGGATGTGAC
TTCCATTCTG
CTCTGTGAGG
ACTCCAAATA
CTGGCCCACC
GCTCCAAAAG
CAGAGGTTGC
GGCTCTGCCA
CCAAGACTGC
CCACCCAACC
TACTCCGTCA
TTCTGCCACC
GTGCCCCACT
TGCTCTCAAC
TGAACCTCAC
GCGGCTTGAG
k AGGTGAGATG
;CCCCAAAATG
'CAGGACAGAT
C TAACCCACAG r GGTCAGGAGA r TAGGGTCAGG
TCCTCATCTC
CCCAACCTCA
3 GAATGGCGGC a GAGGGAAGGG C TGCGAGATGA C CCTGTCTGAG G GGGACTCAGA 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1600 1650 1700 1750 1800 1850 1900 1950 2000 2050 2100 2150 SUBSTITUTE SHEET pp. WO 92/20356 PC1'/US92/04354 77
TTGCATGGGG
GGGAGGACTC
GAGAGGTCCA
TGAGGTGACA
AGAGGGAGGA
AGGACTGGGG
CTGTCCCCTT
TTCCATTCTC
ATGGGGTCTT
GGTTGAGGAA
AGGCTATTGG
TCACCCAGGA
GTGAGGACCT
TCTGGTCTAA
GAACATGAGG
CTGCACAGAA
GGGCCGTCTG
ACGGGGAGGC
GTCCCAGGCC
CAGGACACAT
AAGGACCTAG
TCCTTATCAT
GGGCAGGATC
CAGAGGGGGT
CACCCTCCTG
CTGAGGGCCC
GGCCTTGGTC
GGTGTGCCAG
TGCCACAGGA
TCAGTCCTGT
CTCACTTCCT
ATTCCCTGGA
CTTTGTTAGA
TCCCTCTCTC
CTCCTGCCTG
GTGGGACCCA
AGGGGACCTT
GGGCACGGTG
GGACAGAGCT
GTTCCAGGAT
ATATCCCCGG
TTAGTAGCTC
ACTTGTACCA
GGGGTAAAGG
GCACAGGCGC
AATCCACACC
TGTGGCTTCT
CATTCTCAGA
AGACAGAGCG
GAGGACTGAG
ATCAGCCCTG
CCGAGGTCCT
CTTGGTCTGA
CTGCCAGGAG
TAATTCCAAT
GCACGTGTGG
GGATGTGAAC
CAGGCCCTGC
CATCCACTGC
GTAGCACTGA
GTGGATTCCT
TGAGACAGTA
CAGTGAATGT
CACATAGGAC
AGAATCGACC
CCTTCAGGTT
GGCCACAGAG
*GTCTCCAAGG
CCCAGGCCTG
*CTGCCCTGAC
GGCCTGCAAG
GGAATCCAGA
GCCACATATG
GTGGTCTGAG
CCATATGGCC
CTCAGAAAGA
TAGGGGGACC
CAGGCAGGAA
GGGGATGTCT
TGGCAGGAAT
CCAGAACCAA
TTTTCACTCC
GGGTGACTCA
GTCCCAGGAT
GGTACCCCAG
CCCCTGCTGT
TCCGTTATCC
GAAGGCTGCG
TCAAGGTGAG
GAATTTTGAT
CCAGATGTTT
TCTTGATTTG
CAGGAAAAAT
ATGAGAGTGG
GAAGCCAGGG
CTTCCTGGAG
TCCTCAGGTC
TTGCCCTGAA
TCCACAGAGT
TCTGCTGGCC
TTCAGGGGAC
GAGCACCAAG
TTCAGTT CT C
TGGGTCTTCA
GAGAGTCATC
GCTTACGCGG
TCAGTGTGGA
GCCCATATTT
AAGTGGGGCC
CAAGATGTGC
AGGGACTCCA
AGATCAGGGA
GTTGGGGGGC
ACTCATGTCA
!4AAGATGAGT
AGGGGTCAGC
TGTTTCCAGA
GGTCAACGTA
CTGCCATGCG,
GACCAGAACA
CACCCCAGAG
TGGGATCATT
CTCAGGTCAG
GACCAAGCGG
ATCTCTTGCT
GTCCCCTCCT
GATTTCTCAG
ATAAGGGCCC
GGATGTCACA
CTGTGCTTGC
CTCCAGGAAC
ACAGAGCAGA
TGCACACCAA
CTGGCCTCAC
GGCTGTACCC
AGGCCAACCC
GAGAAGATC7
AGCTGAGGCC
TTGCCCAGC7
AGGAAGAGGA
CCTCGGCCCT
CCTGCATCTT
TCAGGTCAAC
CCCCTTCATG
CACAGTCTGG
TGGCGGTATG
CCTCAGGGAG
GGGAATTGGG
GAGACAGACA
CCTGGACACC
TCTGGGGCAG
GGGACCCCCA
TTCGGGTGAG,
CTGAGGGAGA
AGCATGGGCT
GATGTCAGGG
TAGAGGGAGC
GCACCTCACC
GCCCTTCCCC
GTCCTTCCAT
ACCAGCAAAA
TGCGTGAGAA
GAGTCCAGCC
GGTCTGCACC
CAGGCAGTGA
GGATGCACAG
GGGCCCCACC
CTCCCTACTG
TGAGTACCCT
AGAGGACAGG
GTAAGTAGGC
TCTCACACAC
CCTGCCCACA
2200 2250 2300 2350 2400 2450 2500 2550 2600 2650 2700 2750 2800 2850 2900 2950 3000 3050 3150 3200 3250 3300 3350 3400 3450 3500 3550 3600 3650 3700 3750 3800 3850 3900 3930 3972 4014 4056 4098 4140 4182 4224 4266 4308 4350 4392 4434 4476 4518 4560 4602 4644 4686 4728 4761
ATG
GCC
CAG
CTG
AGT
ACT
GAG
CGA
CTG
GAA
CCT
TTT
TAT
CTG
ATT
GAG
GAT
CTC
AGG
GTC
TCT
CTT
OCT
GAG
CCT
CGA
GAG
GCA
CTC
ATG
GAG
GGC
GTC
GOT
GTC
GAG
000
ACC
TGC
CAA
CTT
GAG
GCC
GAG
CAG
CAG
000
GTA
CTC
CTG
ATC
ATT
CTT
GAT
CTG
GAA
AGO
CAA
CGG
GG
GAG
GCC
ACC
GTG
GGA
AGG
CCA
ATC
AAA
GAG
TTC
GAC
GTC
AAT
GTC
ATC
GAG
GAT
ACA
CCC
CAG
CAA
TCC
CCC
GCC
CAA
AGC
ACT
TAT
AGT
GGC
GTG
ACC
CAG
ATG
TG
CAC
TTG
GTG
TCG
AGG
CAA
TCC
ACT
TCC
CCC
ACC
AAG
CGA
GTC
AAA
AAG
TGC
ATC
ATT
GAG
AGT
GTG
ATC
CTG
AGT
GAG
TCC
GCT
GCC
AGT
TCT
AAG
GCC
ATC
GCC
GAA
CTA
ATG
OCA
GAG
GCC
CAG
CCG
AAA
CTG
GCC
TCT
GGG
TTT
GAG
TGT
GTG
AGG
AAA
TCT
OCA
GOT
CCC
ATG
CTG
TAT
GAA
CAC
CCA
CAC
CTG
CCT
TCA
CCC
GGT
ATC
GCT
GAG
AAT
GAG
GAC
CTC
AAG
GAG
AGT
GG
AAG
OCT
GCT
TGC
GOC
CTG
ACA
ACT
TCC
CTG
GAT
CCA
TAC
TCC
CCC
TCC
ACA
GGC
OTG
GAG
TAC
ATG,
ATG
AAG
CTG
OTC
OAT
ACC
AGC
GAG
TTG
GTC
AAG
TTG
ACC
TAT
GGC
GOC
ATG
CCC
CTG,
AGT
TGA
CCT
GTG
CTG
CCT
ATC
AGC
TCC
OTT
ACA
CAC
CAG
GGC
OAT
TTC
CAT
GAG
AGG
GAG
TCC
GAG
TGT
GOC
CCC
AAC
COT
TTG
GT
AAO,
TGT
CTG
CAC
GGC
CTO
OCT
GTG
AAG
TAC
TGT
GAA
GTG
ACC
CAG
TTC
GAA
TTC
TTT
GCA
TTT
GTC
TCC
CTG
ATA
CCT
TAT
CTG
GOC
GG
SUBSTITUTE SHEET -7 WO 92/20356 PCr/US92/04354 73
AAGTCCTTGA
GCTTTTTCTT
GGAGTCTGAG
AGTGCACCTT
TGAGGCCCAT
GTTTCTGTTC
ATTGTTCAAA
AAGTTTATGA
TAAGAGTCTT
TTGGGATAAT
CAGTAAAATA
CTTGCCTTAT
ACCTGGATTT
TAAAGAATTC
TCTGCTTTTT
AGACTCATAC
AATCGAGGTG
GGTGAGGGTG
GCTGGGGCAT
ATTGTAATGA
GTATGTGATC
CCCATCCCTG
CATGAGTTGC
CCAGGGCCGC
TCTTCACTCT
TATTGGGTGA
TGTTTTTTTT
ATGACAGCAG
GTGTTTTATT
AACAGCAGTG
GATGAGATAA
ACCTCAGTCT
CCTTGGCTTC
TTCCTGTTCA
GGAAGGCCCT
CCACCCATAG
GCAAGATGTC
TGGGGCTCCG
TTTGGGCTTT
TCTTGGGTGG
AAGGTCAGTG
CGTGAAGCAG
AGCCAAGGCC
GTCCAGCAGC
GAAGAGAGCG
CTTGGAGATT
TAAGGGATGG
TCACACAGTT
CAGATTGGGA
GAATAAGTAC
AGAACTAAAG
ATTCTGTAAA
TTTGAGAATG
CTGGCTCTTT
GGGTTAGTAG
GGTCGTAGAG
CTCTAAAGAT
GGTGAGAGTG
GGGAAACTGC
ATCC
CAAGAGTTC
CTTTGAGAGA
AGTGGGAGG4G
TTCCCCTGCC
GTCAGTGTTC
TATCTTTGTT
TTGAATGAAC
CTGTGTATAT
AATCCATTCT
TTAGAAATGT
AAATTAAGAG
ATTTTTAAAG
TAAGAGAAAT
TCTTCTCCAT
TGGAGATGCT
TCTAGGAGCT
GTAGGGAAAA
GTGGAGTGTC
AGTTCCTTCT
GGAGGAAGAG
GGACTGGGCC
TCGTGTGACA
TCAGTAGTAG
CTCTTTTGGA
TTCAGCATCC
AGTTTAAGGG
ATTTTGTGAA
GAAAAATGAG
ATAGTCAATT
ATATATGCAT
TAAATCTGAA
GCACTGAGCA
AAGGTAAGCC
GCAGTCACGT
GTGAGAGAGG
AATGCCCTGA
GGGGG.AGCTG
4800 4850 4900 4950 5000 5050 5100 5150 5200 5250 5300 5350 5400 5450 5500 5550 5600 5650 5700 5724 SUBSTITUTE SHEET L- L_
I-
pr PCr/US92/04354 WO 92/20356 794 INFORMATION FOR SEQUENCE ID NO: 9: SEQUENCE CHARACTERISTICS: LENGTH: 4157 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-2 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 9:
CCCATCCAGA
CCCAGGGAAG
GGTCAGAGGA
GAGGGAAGCA
AGGACTGAGG
GCTGCCTCTG
GCTCAGTCGC
GGAACTCTGG
TGCTCAGGGC
GACTGAGGGC
ACCAACCCCA
TCCCATCTCC
CAATCAACCC
ACGTTCACAT
GGCCTTTGGG
TCCTTAGGGG
TCAAACTGAG
CCCACTTCAG
AAGAGGGAGG
GCTGGGGGAT
CTTCAGGGTG
GGTCAGCAGA
CTTCATGAGG
AGTCTGGAAG
CCCTAAGTGA
CAGGGAGATA
GGTTCCCCCT
CCACAGGAGG
GGACAACGCA
CAGATCTCAG
ACAGGGGCCC
ATCCAGGTGG
GCAGCAAGGG
AGACCCTGGG
TGATGTCAGC
GTAGAGGGAG
GACTCGTCAC
GTCCTTCGCC
TCTCCTTCTC
CAAGCCAGC;
CCTGAGTGAC
CGGAGTCTG(
GCAGTCTGC)
TCCCCATCCG
TCACGGGCCC
CAGCGAGATT
GGCGCAGGCT
CGGGCCTCAC
CTGCCGGGCC
CACCACCTCA
CGTAAGAGCT
CCAGACTCAG
AACCCACCCC
CCCCCATCCC
TCCCCCACCA
ACGGAAGCTC
GTACGGCTAA
ATGCAGAGGA
ACCCAGCATG
CCACCTTTTC
GGGGTTGGGG
ACTGAGGGGA
CCTGGGCACA
ACAGAGAGTT
GGGAGGAATC
ACTCCCCATA
TAAATTGTTC
CAATCTCATT
AGGTGTTGG7
TGAGAAAGGG
CCATCATAAC
CGTGGGGTAP,
GGAGTTGATG
CTCTGGTCG;
AGAGCCTGAG.
GGCCCCATAC
CAGGGCTGTC
SGAAGGGGAG(
SGGTCTCAGGC
CCAGGACACC
SGAGGACCTGC
STACCATATC)
i AAAGGGTGGC
SCACAGAGGG(
SCCAACCCTG(
k CACTGAAGG(
GGCAGAATCC
GGATGTGACG
CTCGCCCTGA
CCGTGAGGAG
CCCAGACAGA
TGGACCACCC
CCCCGCCACC
TTGTGTGACC
CCAGGAATCA
CTACCCTCAC
TCAAACACCA
CCATCCTGGC
CGGGAATGGC
GGGAGGGAAG
AGGGCCCAGG
CCAGGACAGG
ATTCAGCCGA
CCCAGCCTGC
CCTTGGAGTC
GTGGCCGAAT
GAGGGCTGTG
CCAGGATCTG
CCCCCGGCCC
TTAGCTCTGG
TGTACCACAG
GTAAAGAGGA
CAGTCCCTGG
GTTCACCCTA
CAGGATGTGG
*ACCTTGTTTT
CAGATGCAGT
*GTAGGATTGA
AAATCTGCCC
*AGCTGAAGTC
CCTTGGTCTG
CCTGCCAGGA
TGGACTCCAA
STCACGTATGG
k GGGATGTGAG ;ATTAGGCCC72
ACCCTCCACC
TGAGACTTC1
SCCGTGCATTC
GGTTCCACCC
CCACTGACTT
GCAACGGCCT(
GCAAGGTAAG
GGGCCCCCAA
TGCAGGGGAA
CCCCGCCGCT
AGGGCAGGGC
AGGTCAGGAC
TACCAATCCC
ACCCCACCCC
AGAATCCGGC
GGCCAAGCAC
GGGTTGGGTC
CCTCCTGGAA
GGGCCCACTG
GGGAATCCTA
GAGGAGTCAA
CAGATCAGTG
GTGCCCCGTG
GTCTGAGGGC
CCGGACCCAA
AGAAAGAAGG
GGGAACCTGA
GCAGGAGGTT
GCTGTCTGCT
CAGGAGTAAA
GAACCAAAGG
CCCCTCCTCA
CAGAAGGTGA
GGTTCTAGGA
GGGTACCCCT
TGCCCCTGCG,
CCTCCATTAT
AAGGGGCTGG
GTGGACGTGA
TGAATTTGAC
CCAGATGTGG
TTCTTGACAT
ACAAGGAGAA
SCAAGTAGAGT
'GGGAATCCGT
CTCTCCCAGG
rTGCCGTGAA
;CACATTGGA
;ACGTCGGCG
DiCGCCGAGGG
TTAATCCAGC
GACTTCTCAG
TTAACCGCAG
TGGTTAGAAG
CCCAAGAGGG
A~TCCCCCAAC
CAAACCCCAT
TTTGCCCCTG
GCGGATCCTG
TCGTGAGTAT
GACAGTGGAG
TACCCCTGTC
GGGATGCAGA
GGGGAGGAAG
GCAACCTTGG
CTCATTGCAC
TGGGACTTCA
GGTGTGCCCC
GATOCCACAG
TCAGGGATGG
GGGGAACCCT
CATTTCAGGG
GATGAGTAAC
GGTCAGCCCT
CTTGTCTTTC
CTCAGTCAAC
TCTGCCAAGC
GGGCCAGAAT
GTTACTTCAG
CTGGGATCTT
AGTCAGGTCA
GGACCAAGCG
ATCTCTCGTT
GTCCCCTCTA
GAGAGATTCT
AGGTGAGGGC
GGGGACCTCA
GGCTGTGCTT
AATCAGGAGC
100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1600 1650 1700 1750 1800 1850 1900 1950 2000 2050 2100 2150 SUBSTITUTE SHEET WO 92/20356 PGI'/US92/04354
TCCAGGAACC
AGAGCAGAGG
CACACCAAGG
GCCTCACCCT
CTGTACCCTG
AGGCTGACAA
CTGTAAGTAA
TAAGGCCTCA
CCCAGCTCCT
AGGCAGTGAO
GGACGCAGAC
GCCCCACCCG
CCCTATTCTC
AGGTGCCCTC
GTAGGACCCG
GCCTTTGTCA
CACACGCTCC
GCCCGCACTC
GCCTTGGTCT
AGTGCCAACA
CCCAGAACAA
AGTCCTGCAG
CCACTTCCTC
AGGCACTOGA
GAGCCTCCAA
TTCTCTCCCC
CTGCCTGCTG
GAGTCAGTGC
CTGAAGGTTT
ATGGGACTCC
CCTGAGCATG
CTTCAGGTTC
OGAGCATTGA
GGTTCAGTTC
AGGCCTGTOG
CCCTGACCAG
CTCAGGTCAC
GCCTGGAATG
AGAGGGCCTG
TGCTGGCCOG
TGAGGGGGAC
AGGAGAAGAT
AGTTCTCACC
GTCTTCATTG
AGTCATC
CCT GAA GAK GTG GOT GO TCT TCC TC' CCT OCT GO
ATG
GGC
CAG
TCT
OAC
TTC
,GAG
ATG
AGG
AGA
TCC
GTG
GGC
CCC
ATA
CTG
TTC
GAA
GCA
ACC
OGA
TTG
CCT
CTT
GCT
ACT
TCA
TCG,
GGC
GAC
OTT
GAG
AAT
GAG
OTC
CTC
AAO
GAG
ACT
OCA
AAC
TOC
AOC
OAA
AGA
CTT
GAG
CCT
CTA
CCO
ACT
TCC
CTO
GAO
CCG
TOC
TAC
CCC
TCC
ACA
GOC
ATO
CAT
TAC
TAC
TAT
CCT
GAG
GAG
0CC
OCT
GTG
AOT
ACC
AOC
GAG
TTG
GTC
CAO
TTO
ATC
TAC
OOC
GAC
TTO
CCC
CTO
GAG
OTO
CAC
GGA
CAO
COA
ACT
OAA
CCT
ATC
AAC
TCC
OTT
ACA
OAC
CAO
AOC
OAT
CTC
TOT
GAG
AG
GAG
TTC
AAA
ATT
GAA
AG
GGA
GAG
OTT
CCC
AAC
CAA
GAG
CAT
AAO
TTC
CTG
CAC
OOC
CTG
0CC
GTO
AAG
TAC
CTG
OTC
TCC
GAG
AOT
GAG
GAG
ACC
CAC
TAC
OAA
TTC
TTT
OCA
TTT
OTC
TTO
CTG
ATA
CCT
TTT
CTG
COO
TOO
CTO
TAC
TGA
CAO
0CC
CAO
CTO
AOT
ACT
GAG
CAA
CTG
OAA
CCC
TTT
TAC
CTO
ATC
GAG
GAG
CTC
CAG
GGT
CAC
CCA
CAC
CTO
CAO
000
CCT
CTT
GAG
OCA
CTC
ATO
OTO
OGC
ATC
OOC
OTC
GAO
GG
ATO
OTO
CCA
CAT
CCC
TOC
OGC
ACC
GAO
CAO
TOO
000
OCA
CTC
CTG
ATC
ATC
CTT
OAC
CTO
AAA
AG
CAA
CCC
AG
ACA
CTG
AAG
CTO
OCT
OTO
GGA
AGA
CCA
ATC
AAG
GAG
TTC
GAG
OTC
AAT
0CC
ATC
GAG
OAT
OOC
0CC
CTA
CAT
0CC
CAA
AGA
AOT
TAT
AOT
AOC
OTO
ACC
CAO
ATA
TOO
GAC
CTG
AOT
CTC
AAG
GAA
TCC AOC TCC OAT ATO TTT AOG AAO COA 0CC OTC CTC AAA 0CC GTO OAA TOC CTO OTC ATG ATC OCA GAO GAG AOT OTC OTO CAO OAT CCT ATT GAA ATC OOT COO OCT 2200 2250 2300 2350 2400 2450 2500 2550 2597 2639 2681 2723 2765 2807 2849 2891 2933 2975 3017 3059 3101 3143 3185 3227 3269 3311 3353 3395 3437 3479 3521 3542 3592 3642 3692 3742 3792 3842 3892 3942 3992 4042 4092 4142 4157
OTCTCAOCAC
OCACCTTCCA
OGCCCATTCC
TTTCTGTTCT
TTOTTCAAAT
OTTTATOAAT
TAAGAOTCCT
TTOTCACATA
AATTAOCAOT
TGCCTTATAC
TOCTTCTTTO
TCACTOGCTC
CCTGGTAGTA
ATGTTGCNGC
GGOCCCCATC
TOCCTCTTTG
OTTOGATOAC
GTTCCTTTTA
GACAGTAGTC
OTTTTTTATT
ATAACAGCAO
AAAATACATO
CTCAGTCTAT
AGAATOCAAA.
ATTTCTTTAC
GTOG
CAGGGCCAGT
CATTAOCTTC
AAOAOAOCAO
TTTOAOATTT
ACAAATGOTT
ACACATAOTG
CAGATTGGGA
TGOAATATOT
ATACAAOOAA
TATOTAAAAT
AOAAATTAAA
CATTCACTCA
GGGAGGGGGT
CACTOCCTCO
TCAGCATTCT
ATCTTTCTTT
G0ATGAACTT
CTOTTTATAT
AATCCATTCC
ATTTOCCTAT
CTCAAAAGAT
TAAAAATATG
TCTOAATAAA
GCATCTGCTC
CTGOOCCAGT
TGTOATATOA
TAOCAOTGAG
CCTOTTGGAA
CAGCATCCAA
AOTTTAGGGG
ATTTTOTOAO
ATTGTOAACO
AOTTAATTCT
TGTATOTTTT
TTCTTCCTOT
TGTGGAAGGC
SUBSTITUTE SHEET I WO 92/20356 PCT/US92/04354 76 INFORMATION FOR SEQUENCE ID NO: SEQUENCE CHAP.ACTERISTIC6: LENGTH: 662 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-21 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO:
I>
GGATCCCCAT
AGGGAhGTCA
CAGAGAACAG
GGAAGCAGGC
ACTGAGGCGG
CCTCTGCTGC
AGTCGCCACC
CTCTGGTGTA
CAGGGCCCAG
GAGGGTAACC
CCCCACCCCC
ACGGCACCCC
GAGCTTTGCC
GCACGCGGAT
GGATCCAGGA
CGGGGCCGGA
CGAGATTCTC
GCAGGCTCCG
GCCTCACCCC
CAGGCCTGGA
ACCTCACCCC
AGAGCTTTGT
ACTCAGCCAG
CCCCCGCACC
A5'CCCCCAAC
CAAACCCCGA
CCTGCAATCA
cc
AGAATCCAGT
TGTGACGCCA
GCCCTGAGCA
TGAGGAGGCA
AGACAGAGGG
CCACCCTGCA
GCCACCCCCC
GTGACCAGGG
GAATCAAGGT
CCCACCACCA
ACCAAACCCA
TTCCCATCCC
ACCCACGGAA
TCCACCCCTG
CTGACTTGCG
ACGGCCTGAC
AGGTAAGATG
CCCCCAATAA
GGGGAAGACT
GCCGCTTTAA
CAGGGCTGGT
CAGGACCCCA
TTCCCATCCC
CCACCATCGC
CACCCATCCT
GCTCCGGGAA
CTGTGAACCC
CGTTGGAGGT
GTCGGCGGAG
CCGAGGGAGG
TCCAGCGCTG
TCTCAGGCTC
CCGCAGGGAA
TAGAAGTGCT
AGAGGGGACT
CCAACACCAA
TCAAACATCA
GGCAGAATCG
TGGCGGCCAA
1 1
I
SUBSTITUTE SHEET WO 92/20356 77 INFORMATION FOR SEQUENCE ID NO: 11: SEQUENCE CHARACTERISTICS: LENGTH: 1640 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA to mRNA (ix) FEATURE: NAME/KEY: cDNA MAGE-3 (xi) SEQUENCE DESCRIPTION: SEQ ID NOi 11: PCT/US92/04354
GCCGCGAGGG
GACAGGCTGA
AGATCTGCCA
AAGCCGGCCC AGGCTCGGTG CCTGGAGGAC CAGAGGCCCC GTGGGTCTCC ATTGCCCAGC
AGGAGGCAAG
CGGAGGAGCA
TCCTGCCCAC
GTTCTGAGGG
CTGAAGGAGA
ACTCCCGCCT
GTTGCCCTGA CCAGAGTCAT C
ATG
GC
CAG
TCT
GAG
CTC
GAG
CCT
GTG
AGG
GGA
TCC
GTG
GGC
CCC
AGA
CTG
TTG
GAA
GCA
ACC
GGA
TTG
CCT CTT GAG CTT GAG GCC GCT CCT GCT ACT CTA GTT TCA CCA GAT CCC ACT ACC GAC TCC AGC GAC CTG GAG GCC GAG TTG GAG CCG GTC AAT TGG CAG AGT TCC TTG GAC CCC ATC CTC TCC TAC AAG GCA GOC
AGG
GGA
GAG
GTC
CCC
AAC
CAA
GAG
CAT
AAG
TTC
CTG
CAC
GGC
CTG
GCC
GTG
AAG
TAC
CTG
GTC
TCC
GAG
AGT
GAG
GAG
ACC
CAG
TAC
GAA
TTC
TTT
GCA
TTT
GTC
TTG
CTG
ATA
CCT
TTT
CTG
CGG
TGG
CTG
TAC
TGA
CAC
CTG
GAG
GGG
CCT
CTC
GAG
GCA
CTC
ATG
GTG
GGC
ATC
GGT
GTC
GAG
GGG
ACC
GTC
CCA
CAT
CCC
TGC
GGC
GCT
GAG
CAG
TGG
GGG
GCA
CTC
CTG
ATC
ATC
TTT
GAC
CTG
AAA
AGG
CAA
CCC
AGG
ATG
CTG
AAG CCT GAA CTG GTG GGT GCC TCC TCC GTG CCT GCT GGA GCC TCC AGC CAA TCC CCA AGC ACC CTC AGT AGG AAG, TAT CGA GGG AGT GTC TTC AGC AAA GAG CTO ATG GCC ACC TGC AAT CAG ATC GCC ATA ATC ATC TGG GAG GAA GAC AGT CAT TTC GTG GGC AGT GAT 0CC CTC GTT GTA AAG ATC CAT GAG TOG 100 150 171 213 255 297 339 381 423 465 507 549 591 633 675 717 759 801 843 885 927 969 1011 1053 1095 1116 1166 1216 1266 1316 1366 1416 1466 1516 1566 1616 1640
GTCTGAGCAC
GCACCTTCCG
GGCCCAXTCT
TTTCTGTTCT
TTGTTCA.AAT
GTTTATGAAT
TAAGAGTCTT
TTGTGACATA
GAATTAGCAA
ATTCTTGCCT
ACCAGGATTT
GAGTTGCAGC
GGGCCGCATC
TCACTCTTTG
GTTGGATGAC
GTTCCTTTTA
GACAGTAGTC
GttTTTTACT
ATAATAGCAG
TAACATACAT
TGTACCTCAA
CCTTGACTTC
CAGGGCCAGT
CCTTAGTTTC
AAGCGAGCAG
TTTGAGATTA
ACGGATGGTT
ACACATAGTG
CAAATTgGGA
TGGTAAAAGT
GAGATAACTC
TCTATTCTGT
TTTG
GGGAGGGGGT
CACTGCCTCC
TCAGCATTCT
TTCTTTGTTT
GAATGAGCGT
CTGTTTATAT
AATCCATTCC
ATTTGCTTAA
AAGAAATCAA
AAAATTAAAC
CTGGGCCAGT
TGTGACGTGA
TAGTAGTGGG
CCTGTTGGAG
CAGCATCCAG
AGTTTAGGAG
ATTTTGTGAA.
AATTGTGAGC
AAGATAGTTG
AAATATGCAA
SUBSTITUTE SHEET mb- F- -7 WO 92/20356 ~78 INFORMATION FOR SEQUENCE ID NO: 12: SEQUENCE CHARACTERISTICS: LENGTH: 943 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-31 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 12: PCT/US92/04354
GGATCCTCCA
CCTGACAGTT
GCCCGTGGAT
AGGACTTGGT
GATAGTGCCA
CTGCCCCAGA
TTCAGTCCTG
CTCTCACTTC
AGAGGCCCCC
TTAGAGCCTC
TCCCTCTCTC
CTCCCGCCTG
CCCCAGTAGA
CTGGGAATCC
TCCTCTCCCA
OTGAGGCAGT
ACGGTGAAGG
ACACATGGAC
CAGCCTCAGC
CTCCTTCAGG
GGAGGAGCAC
CAAGGTTCCA
CCCAGGCCAG
TTGCCCTGAC
GAG CAG A( GCC CGA G( GCT ACT G1 k GTT GAA G.
k GAT CCT C( r ACC ATG Al AGC AAC C; ;GAG TCT Gi STTG OTT Ci
GTGGGGACCT
GTGGCTGCGT
GGAATCAGGA
GTCCTCAGGT
TTTGCCTTGG,
TCCAGAGCGC
ATGCGCTGGC
TTCTGAGGGG
TGAAGGAGAA
TTCAGTACTC
TGGGTCTCCA
CAGAGTCATC
CACAGAGTCT
TTGCTGTCTG
GCTCCAGGAA
CACAGAGTAG
ATTCAAACCA
CTGGCCTCAC
CGGATGTACC
ACAGGCTGAC
GATCTGTAAG
AGCTGAGGTC
TTGCCCAGCT
GGCCAACCCT
CACATTGGGG
CAAGGCAGTG
AGGGGgCTCA
AGGGCCCCAC
CCTCAATACT
CTGAGGTGCC
CTGGAGGACC
TAAGCCTTTG
TCTCACATGC
CCTGCCCACA
CCT GAA GAA GTG GOT GCG SUBSTITUTE SHEET
BW
)92/20356 PCU/US92/04354 -7-9 INFORMATION FOR SEQUENCE ID NO: 13: SEQUENCE CHARACTERISTICS: LENGTH: 2531 base pairs TYPE: nucleic acid TOPOLOGY: linear (1i) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-4 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 13:
GGATCCAGGC
GGGATCATCC
TCTTGATGGC
GGCCCATGGA
TGGTCTGAGA
GCCAGCAGTG
CAAGACACAT
CCTGCAGAAT
CTTCCTCCTT
TGGAGGCCAC
TAGAGCCTCT
CCTGCCTGGA
ACTCCATGAG
ACTGAGGGAC
TTCCTCTCCT
CAGTGTCCTC
AATGTTTGCC
AGGACTCCAA
CGACCTCTGC
CAGGTTCTGA
AGAGGAGCAC
AAGATTTGGT
GAAATGTGAG
AGTGGGGACC
CGGGGCTGTG
AGGAGCTCCA
AGGTTACAGA
CTGAATGCAC
AGAGTCTGGC
TGGCCGGCTA
GCAGACAGGC
CAAGGAGAAG
TCTCAGCTGA
CCCATTGCCC
GGCCCTGAGT
TCACAGAGTC
CTTACAGTCT
GGAACAAGGC
GCAGAGGATG
ACCAAGGGCC
CTCACCTCCC
TACCCTGAGG
CAACCGGAGA
ATCTGTAAGT
GGTCTCTCAC
AGCTTTTGCC
GAACACAGTG
CAGCCTACCC
GCACCCTAAG
AGTGAGGCCT
CACAGGCTGT
CCACCTGCCA
TACCATCAAT
TGCTCTCTCA
CAGGATTCCC
AAGCCTTTGT
ATGCTCCCTC
TGCACTCTTG
TCTCCGTAGG CCTGTGGGTC CCTGCTGCCC TGACCAGAGT CATC
ATG
GGC
CAG
TCC
GCT
GCC
AAT
TCG
A.AG
GCC
ATC
GCC
GAA
CTG
TTT
GCA
GAG
GTC
CAG
CCT
GAA
AAT
GCT
TCT
GTT
GCT
TCT
GAG
TTA
GAG
CCT
GTG
AAG
AAA
TCC
GTG
GGC
CCC
ATG
CTG
TAT
GAIN
GCG
ACC
GCA
TTG
TCT
GAG
CCT
CCT
TCA
CCC
GGT
GAC
GAT
GAG
AAT
GAG
GAC
CTT
AAG
GAG
GGT
GGG
AAC
coc
AGC
AGA
TTA
GAG
0CC
ACT
CTG
GCA
ACT
TCC
OCA
GAG
CTG
TAC
TCC
CCC
TCC
ACA
GGC
GTG
GAG
TAC
TAT
TAT
GTT
GAG
CAG
CAA
ACT
GTC
GGT
ACC
AGC
GAG
TTG
GTC
AAG
CTG
GCC
TAT
GC
GAC
ATG
CCC
CTG
GAG
GTC
CGC
GAG
AAG
GAA
GAG
CCT
CCT
ATC
AGC
TCC
GCT
ACA
CGC
AAG
AGC
GAT
CTT
AGC
GGG
AGG
GAG
TTC
ATT
GAA
PAGT
GAG
GAG
GGC
CCC
AGC
CAA
TTG
CAT
AAG
TGC
ATG
AAC
GGC
CTG
GCC
GTG
AAA
TAC
CTG
GTC
0CC
GAG
CAG
GCC
CAG
ACC
CAG
TTC
GAA
TTC
TTT
GCA
TTT
ATC
ACC
CTG
ATA
TCT
TAT
CTG
CGG
TG
CTG
TAC
GGA
CAC
CTG
GAG
CTG
AGT
ACT
GAG
CGA
CTG
GAA
CCT
TTT
TAC
CTG
ATC
GAG
GAT
CTC
CAG
GGT
GAG
CCA
GTC
TOC
GC
GCT
GAG
CCT
TGC
GAG
GAA
CTC
ATG
GTG
GC
ACC
GGT
GTC
GAG
GG
ACC
GTA
CCA
CAT
TCC
TGA
P.AG
CTG
GCT
GAA
CAG
TGG
GGG
GCA
CGC
CTG
ATC
ATT
CTT
AAT
CTG
GAA
AGG
CAA
CCC
AGG
GTG
CTG
CCT
GTG
GTC
GTG
GGA
AGG
CCA
CTC
AAG
GAG
TTC
GAC
GTC
AAT
GGC
ATC
GAG
GAT
GGC
GCT
GTC
CGT
GAG
GT
TCC
CCT
GCC
CAA
AGC
AOT
TAT
AGA
GGC
GTG
ACC
CAG
ACA
TG
CAC
TOG
AGT
CTG
AGG
GAA
GAA
GCA
TCC
GCT
TCT
CCC
ACC
AAC
CGA
GTC
AAA
AAG
TGC
ATC
ATT
GAG
ACT
GTG
AAT
OCT
GTC
GCA
100 150 200 250 300 350 400 450 500 550 600 624 666 708 750 792 834 876 918 960 1002 1044 1086 1128 1170 1212 1254 1296 1338 1380 1422 1464 1506 1548 1578 1628 1678 1728 1778 1828 1878 1928
OCATGAGTTG
ATCTAACAGC
CATTCTTCAC
TCTATTTTGT
GTTGAAATGT
TTATGAATCG
AGTCTTGTTT
CAGCCAGGGC
CCTGTGCAGC
TCTGTTTGAA
TGGATGACTT
TCCTTTTAAT
TAGTTAACGT
TTTATTCAGA
TGTGGGGAAG,
AGCTTCCCTT
GAAAATAGTC
GGAGATTTAT
GGATGGTTGA
ATATTGCTGT
TTGGGAAATC
GGGCAGGGCT
GCCTCGTGTA
AGTGTTCTTA
CTCTGTTTCC
ATTAACTTCA
TAATATAGTT
CGTTCTATTT
GGGCCAGTGC
ACATGAGGCC
GTAGTOGGTT
TTTTACAATT
GCATCCAAGT
TAGGAGTAAG
TGTGAATTTG
SUBSTITUTE SHEET r WO 92/20356 PGI'/US92/04354
GGACATAATA
GAAATAGGTG
GTCTATTCTG
CTTCGTGAAT
ACTGGCTCAT
AGGATTAGTA
GGGTATTAAG
CCTCTAAGAT
GAGAGTGGTC
AACTGCATTT
AGGGCCAGAT
TCTGAGCAGT
GGG
ACAGCAGTGG
AGATAAATTA
TAAAATTTAA
GTAAGAGAAA
TTCTTCTCTA
GTGGAGATAC
AGTCTAGGAG
GTAGGGGAALA
GGGTGTAAAT
TCTTCTGAGG
TCTCAGAGGG
TCCTTTGTGA
AGTAAGTATT
AAAGATACTT
AAATATATAT
TTAAATCTGA
TGCACTGAGC
TAGG4GTAAGC
CGCGGTCATA
AGTAACGAGT
TCCCTGTGTG
GATCTGATTC
AGAGGGAAAA
CAATGGATGA
TAGAAGTGTG
AATTCCCGCC
GCATACCTGG
ATAAATAATT
ATCTGCTCTG
CAGACACACA
TAATTAAG4GT
GTGGGTATGG
GGGCCTTTTG
TAATGAAGCT
GCCCAGATTG
ACAGAGAGGA
AATTCACCGT
TTATGCCTCA
ATTTCCTTGG
CTTTCTGTTA
TGGAAGGCCC
CCTACCGATA
GACAAGATGT
GGCTCCAGGT
GGCTTTGGGA
TGGTGGGTCC
GAAAAGTTGC
GCCTCTACCT
1978 2028 2078 2128 2178 2228 2278 2328 2378 2428 2478 2528 2531 SUBSTITUTE SHEET p WO 92/20356 PCT/US92/04354 INFORMATION FOR SEQUENCE ID NO: 14: SEQUENCE CHARACTERISTICS: LENGTH: 2531 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-41 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 14:
GGATCCAGGC
GGGATCATCC
TCTTGATGGC
GGCCCATGGA
TGGTCTGAGA
GCCAGCAGTG
CAAGACACAT
CCTGCAGAAT
CTTCCTCCTT
TGGAGGCCAC
TAGAGCCTCT
TCTCCGTAGG
CCTGCTGCCC
CCTGCCTGGA
ACTCCATGAG
ACTGAGGGAC
TTCCTCTCCT
CAGTGTCCTC
AATGTTTGCC
AGGACTCCAA
CGACCTCTGC
CAGGTTCTGA
AGAGGAGCAC
AAGATTTGGT
CCTGTGGGTC
TGAGCAGAGT
GAAATGTGAG
AGTGGGGACC
CGGGGCTGTG
AGGAGCTCCA
AGGTTACAGA
CTGAATGCAC
AGAGTCTGGC
TGGCCGGCTA
GCAGACAGGC
CAAGGAGAAG
TCTCAGCTGA
CCCATTGCCC
CATC
GGCCCTGAGT
TCACAGAGTC
CTTACAGTCT
GGAACAAGGC
GCAGAGGATG
ACCAAGGGCC
CTCACCTCCC
TACCCTGAGG
CAACCGGAGA
ATCTGTAAGT
GGTCTCTCAC
AGCTTTTGCC
GAACACAGTG
CAGCCTACCC
GCACCCTAAG
AGTGAGGCCT
CACAGGCTGT
CCACCTGCCA
TACCATCAAT
TGCTCTCTCA
CAGGATTCCC
AAGCCTTTGT
ATGCTCCCTC
TGCACTCTTG
I 4
ATG
GGC
CAG
TCC
GCT
GCC
AAT
TCG
AAG
GCC
ATC
GCC
GAA
CTG
TTT
GCA
GAG
GTC
CAG
CCT
GAA
AAT
GCT
TCT
OTT
OCT
TCT
GAG
TTA
GAG
CCT
GTG
AAG
AAA
TCC
GTG
GC
CCC
ATG
CTG
TAT
GAA
GCG
ACC
GCA
TTG
TCT
GAG
CCT
CCT
TCA
CCC
GOT
GAC
GAT
GAG
AAT
GAG
GAC
CTT
AAG
GAG
GOT
GGG
AAC
CGC
AGC
AGA
TTA
AGT
GAG
GAG
GGC
CCC
AGC
CAA
TTG
CAT
AAG
TGC
ATG
AAC
GC
CTG
GCC
GTG
AAA
TAC
CTG
GTC
GCC
GAG
CAC
CTG
GAG
CTG
AGT
ACT
GAG
CGA
CTG
OAA
CCT
TTT
TAC
CTG
ATC
GAG
GAT
CTC
CAG
GGT
GAG
CCA
GTC
100 150 200 250 300 350 400 450 500 550 600 624 666 708 750 792 834 876 918 960 1002 1044 1086 1128 1170 1212 1254 1296 1338 1380 1422 1464 1506 1548 1578 1628 1678 1728 1778 1828 1878 1928 1978
GCATGAGTTO
ATCTAACAGC
CATTCTTCAC
TCTATTTTGT
GTTGAA.ATGT
TTATGAATCG
AGTCTTGTTT
GGACATAATA
CAGCCAGGGC
CCTGTGCAGC
TCTGTTTGAA
TGGATGACTT
TCCTTTTAAT
TAGTTAACGT
TTTATTCAGA
ACAGCAGTGG
TGTGGGGAAG,
AGCTTCCCTT
GAAAATAGTC
GGAGATTTAT
GGATGGTTGA
ATATTGCTGT
TTGGGAAATC
AGTAAGTATT
GGGCAGGGCT
GCCTCGTGTA
AGTGTTCTTA
CTCTGTTTCC
ATTAACTTCA
TAATATAGTT
COTTCTATTT
TAGAAGTGTG
GGGCCAGTGC
ACATGAGGCC
GTAGTGGGTT
TTTTACAATT
GCATCCAAGT
TAGGAGTAAG
TGTGAATTTG
AATTCACCGT
SUBSTITUTE SHEET h
I
WO 92/20356 PCT/US92/04354
GAAATAGGTG
GTCTATTCTG
CTTCGTGAAT
ACTGGCTCAT
AGGATTAGTA
GGGTATTAAG
CCTCTAAGAT
GAGAGTGGTC
AACTCCATTT
AGG4GCCAGAT
TCTGAGCGGT
GGG
AGATAAATTA
TAAAATTTAA
GTAAGAGAAA
TTCTTCTCTA
GTGGAGATAC
AGTCTAGGAG
GTAGGGGAAA
GGGTGTAAAT
TCTTCTGAGG
TCTCAGAGGG
TCCTTTGTGA
AAAGATACTT
AAATATATAT
TTAAATCTGA
TGCACTGAGC
TAGGGTAAGC
CGCGGTCATA
AGTAACGAGT
TCCCTGTGTG
GATCTGATTC
AGAGGGAAAA
CAATGGATGA
AATTCCCGCC
GCATACCTGG
ATAAATAATT
ATCTGCTCTG
CAGACACACA
TAATTAAGGT
GTGGGTATGG
GGGCCTTTTG
TAATGAAGCT
GCCCAGATTG
ACAGAGAGGA
TTATGCCTCA
ATTTCCTTGG
CTTTCTGTTA
TGGAAGGCCC
CCTACCGATA
GACAAGATGT
GGCTCCAGGT
GGCTTTGGGA
TGGTGGGTCC
GAAAAGTTGC
GCCTCTACCT
2028 2078 2128 2178 2228 2278 2328 2378 2428 2478 2528 2531 SUBSTITUTE SHEET WO 92/20356 PC1/US92/04354 INFORMATION FOR SEQUENCE ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 1068 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA to mRNA (ix) FEATURE: NAME/KEY: cDNA MAGE-4 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:
G
GAA
CTC
ATG
GTG
GGC
ACC
GGT
GTC
GAG
GGG
ACC
GTA
CCA
CAT
TCC
GGG
GCA
CGC
CTG
ATC
ATT
CTT
AAT
CTG
GAA
AGG
CAA
CCC
AGG
GTG
CTG
CCA AGC CTC AGT AAG TAT GAG AGA TTC GOC GAC GTG GTC ACC AAT CAG GGC ACA ATC TGG GAG CAC GAT TGG GGC AGT OCT CTG GTC AGG COT GAA
ACC
AAC
CGA
GTC
AAA
AAG
TGC
ATC
ATT
GAG
ACT
GTG
AAT
GCT
GTC
GCA
TCG
AAG
GCC
ATC
0CC
GAA
CTG
TTT
OCA
GAG
GTC
CAG
CCT
GAA
AAT
GCT
CCT
GTG
AAG
AAA
TCC
GTG
GGC
CCC
ATG
CTG
TAT
GAA
GCG
ACC
GCA
TTG
GCA GAG GAG TTG CTG GTC TAC AAO TCC CTG CCC 0CC TCC TAT ACA GOC GOC GAC GTG ATG GAG CCC TAC CTG TAT GAG TAT GTG GTT COC GAG GAG TTG TTC CGA CAT TTT CTG AAG GCA GAA TOC TTT CCT ATO ATC TTT AAC ACC TAC GGC CTG CTO CTG ATA ATC GCC TCT GAG GTG TAT GAT AAA CTG CTC TAC CGG CAG CTO TOG GOT GTC CTG GAG GCC TAC CCA GAG GGA GTC
GCTGGGCCAG
GTAACATGAG
TTAGTAGTGG
TCCTTTTACA
TCAGCATCCA
GTTTAGGAGT
TTTTGTGAAT
GTGAATTC
82 124 166 208 250 292 334 376 418 460 502 544 586 628 670 720 770 820 870 920 970 1020 1068
*TGAGCATGAO
TGCATCTAAC
OCCCATTCTT
OTTTCTATTT
ATTGTTGAAA
AGTTTATGAA
AAGAGTCTTG
TTGGGACATA
TTGCAGCCAG
AGCCCTGTOC
CACTCTGTTT
TGTTGGATOA
TOTTCCTTTT
TCGTAGTTAA
TTTTTTATTC
ATAACAGCAG
GGCTGTGGGG
AGCAGCTTCC
GAAGAAAATA
CTTGGAGATT
AATGGATGGT
COTATATTGC
AGATTGGGAA
TGGAGTAAGT
AAGGGGCAGG
CTTGCCTCOT
GTCAGTGTTC
TATCTCTGTT
TGAATTAACT
TGTTAATATA
ATCCGTTCTA
ATTTAGAAGT
SUBSTITUTE SHEET WO 92/20356 PC1/US92/04354 INFORMATION FOR SEQUENCE ID NO: 16: SEQUENCE CHARACTERISTICS: LENGTH: 2226 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-5 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 16:
GGATCCAGGC
GGGACCATTC
TCCTGTTAGC
GGCCCATGCA
TGGTCTGAGG,
TAGTGCCAGC
GCCCCAGAAC
TCAGTCCTGC
CTCACTTTTT
GAAGCTCCAG
ATCTGTAAGT
GGCTTCTCAC
AGCTCCTGCC
CTTGCCAGGA
ACCCCAAGAG
ACTGGGGGCC
TTCCTCTTCC
CCGTGCCCTC
AGTGAACGTT
ATATGGGACT
AGAATCAGCC
CCTTCAGGTT
AGGATCCCCA
AAGCCTTTGT
ATGCTCCCTC
CACACTCCTG
GAAAGGTGAG
GGTGGAGACC
TGAGGCTGTG
AGGAGCTCCA
AGGTCACAGA
TGCCTTGAAT
CCAGAGCACC
TCTGCTTGCT
CTCAGGGGAC
GGAGGCCCTA
TAGAGCCTCC
TCTCTCCAGG
CCTGTTGCGG,
kG AGT CAG 'A CCC TGG 'A AGA GTCI C~T TCA CTC kG AAG AGG ;T TCC GAG
GGCCCTGTGT
TCACAGATTC
CTTGCAGTCT
GGAAACAGAC
GCAGAGGAGA
GCACACTAAT
TGGCCTCACC
TGTGTACCCT
AGGCTGACCA
GAGGAGCACC
AAGGTTCAGT
CCAGTGGGTC
TGACCAGAGT
CTT GAG TGG TCC CAG GTC CTG CCA CCA GCA CAG AGT ACT TGA
TTCATTTTCT
GAAATGCTGG
CTTCGGCAAA
AGGAAGCGGA
CTCCTATGAT
GCCTCCTGAT
CCTGAGGAGA
GAGGGAGCAC
TGGTGCAGGA
ATATGCTATG,
CTGGAGCACG
CCTGCGTGAA
CTGCAGCCAG
CTCCGTCCAG
TCTCTTTGAA
TGGATGACTT
TTCTTTTAAT
CAGTAGTCAC
TTTTTATTCA
TACAGCAGTG
TGATGACATA
TATTCGGTAA
TTCTTTGAGA
GCTCCTCAAG
AGAGCGTCAT
GCCTCCGAGT
CCCCACCAGC
GGCCTGCTGG
AATCGTCTTG
AAATCTGGGA
AGTGTCTGTG
AAACTACCTG
AGTTACTGTG
TGGTCAGGGT
GCAGCTTTGA
GGCCACTGCG
TAGTTTCCCC
GAGAGCAGTC
TGAGATTTGT
GGGTGGTTGA
ACATAGTGCT
GATTGGGAAA
GAATAAGTAT
AAGAAATTAA
AATTTTTTTT
ATGTAAGACA
TATTAAGTCA
CAAAAATTAC
CCTTGCAGCT
AACACCTACA
TTGATAATAA
GGCATGATTG
GGAGCTGAGT
GGGAGCCCAG
GAGTACCGGC
GGGTCCAAGG
CAATGCAAGA
GAGAGGAGGA
AGGGGGGCTG,
TGCCTTAATG
AACATTCTTA
CTTTGTTTCC
ATGAACTTCA
GTTTATATAG
TCCATTCCAT
TCATTTAGAA
AAGATATTTA
AAAAAATGTG
AATTAAATCT
AGGAGCTGGT
AAGCGCTGCT
GGTCTTTGGC
CCCTTGTCAC
TCAGATCATG
CAATGGAGGG
GTGATGAAGG
GAAGCTGCTC
AGGTGCCCAG
GCACTCGCTG
GTTCTCATTT
AGAGGGAGTC
GGCCAGTGCA
TGACATGAGG
GTAGTGGGTT
TTTTGGAATT
GCATTCAAAT
TTTAGGAGTA
TTTGTGAATT
ATGTGAATGA
ATTCTTGCTT
CATACCTGGA
GAATAAATCA
GAGCACAGAG
CAGCCTACCC
GCACCCTGAG
ACTGAGGCCT
TGCAGACGTC
GGCCCCCATC
CTCTCTACTG
GAGGTGCCCT
GGATCACCAG
AAAGGAGAAG,
TTTTAGCTGA
TCCATTGCCC
CGTC
CCT GAG GAA CTG CTG CTG CCT CCG CCA AAT CCA TTA GCA CCT CCC OTA AGA AGG
CACAAAGGCA
TTCCTGAGAT
ATTGACGTGA
CTGCCTGGGA
CCCAAGACGG
CAAATGCGTC
TGTATGTTGG
ACCCAAGATT
CAGTGATCCC
CTTGAAAGTA
CCTACCCATC
TGAGCATGAG
CCTTCCAGGG
CCCATTCTTC
TCTGTTCTAhT
GTTCAAATGT
TTATGAATGA
AGAGTCTTGT
GGGACATAGT
GCAGTAAAAC
ATACTCAGTC
TTTCCTTGGC
TTCTCCCTGT
100 150 200 250 300 350 400 450 500 550 600 644 684 728 770 812 854 896 908 958 1008 1058 1108 1158 1208 1258 1308 1358 1408 1458 1508 1558 1608 1658 1708 1758 1808 1858 1908 1958 2008 2058 SUBSTITUTE SHEET WO 92/20356 PCr/US92/04354 TCACTGGCTC ATTTATTCTC TATGCACTGA GCATTTGCTC TGTGGAAGGC 2108 CCTGGGTTAA TAGTGGAGAT GCTAAGGTAA GCCAGACTCA CCCCTACCCA 2158 CAGGGTAGTA AAGTCTAGGA GCAGCAGTCA TATAATTAAG GTG(GAGAGAT 2208 GCCCTCTAAG ATGTAGAG 2226 SUBSTITUTE SHEET WO 92/20356 PCr/US92/04354 INFORMATION FOR SEQUENCE ID NO: 17: SEQUENCE CHARACTERISTICS: LENGTH: 2305 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-51. gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 17:
GGATCCAGGC
GGGACCATTC
TCCTGTTAGC
GGCCCATGCA
TGGTCTGAGG
TAGTGCCAGC
GCCCCAGAAC
TCAGTCCTGC
CTCACTTTTT
GAAGCTCCAG
ATCTGTAAGT
GGCTTCTCAC
AGCTCCTGCC
CTTGCCAGGA
ACCCCAAGAG
ACTGGGGGCC
TTCCTCTTCC
CCGTGCCCTC
AGTGAACGTT
ATATGGGACT
AGAATCAGCC
CCTTCAGGTT
AGGATCCCCA
AAGCCTTTGT
ATGCTCCCTC
CACACTCCTG
GAAAGGTGAG
GGTGGAGACC
TGAGGCTGTG
AGGAGCTCCA
AGGTCACAGA
TGCCTTGAAT
CCAGAGCACC
TCTGCTTGCT
CTCAGGGGAC
GGAGGCCCTA
TAGAGCCTCC
TCTCTCCAGG
CCTGTTGCGG
GGCCCTGTGT
TCACAGATTC
CTTGCAGTCT
GGAAACAGAC
GCAGAGGAGA
GCACACTAAT
TGGCCTCACC
TGTGTACCCT
AGGCTGACCA
GAGGAGCACC
AAGGTTCAGT
CCAGTGGGTC
TGACCAGAGT
GAGCACAGAG
CAGCCTACCC
GCACCCTGAG
ACTGAGGCCT
TGCAGACGTC
GGCCCCCATC
CTCTCTACTG
GAGGTGCCCT
GGATCACCAG
AAAGGAGAAG
TTTTAGCTGA
TCCATTGCCC
CGTC
CCT GAG GAA TGG GTG TGC CCT CCT CCT CTG CTG CTG CCT CCG CCA AAT CCA TTA GCA CCT CCC GTA AGA AGG
ATG
GGC
AGG
CTC
GGT
TCC
AGG
CTG
TCT CTT GAG CAG AAG AGT CTT GAC ACC CAA GAA GAG CTG CCA CTA CTG AGG AGC CTC TGG TCC CAG GCA CCC CAC CAG GTC CTC TCA AGA CCA CTG CCA TCG ATT TCA GCT CCA GCA ACC AAG AAG, ACC CAG AGT CTG TOT TCC 100 150 200 250 300 350 450 500 550 600 644 686 728 770 812 854 896 938 980 992 1042 1092 1142 1192 1242 1292 1342 1392 1442 1492 1542 TGG CTG ACT T TTCATTTTCT GC GAAATGCTGG AG CTTCGGCAAA GC AGGAAGCGGA CC CTCCTATGAT GG CTGATAATCG TC GGAGAAAATC TG AGCACAGTGT CT CAGGAAAACT AC TATGAGTTAC TG CACGTGGTCA GC TGAAGCAGCT T1 CCAGGGCCAC TC.
CCAGTAGTTT CC TGAAGAGAGC AC ACTTTGAGAT T1 TAATGGGTGG T1 TCACACATAG TC TTCAGATTGG G AGTGGAATAA G~ GATAAAGAAA T1
GA
TCCTCAAG
AGCGTCAT
~CTCCGAGT
~CCACCAGC
ICCTGGTGG
~TTGGGCAT
rGGAGGAGC
~GTGGGGAG
CTGGAGTA
TGGGGTCC
GTCAATGC
TATTAAGTCA
CAAAAATTAC
CCTTGCAGCT
AACACCTACA
TTTAATCAGA
GATTGCAATG
TGGGTGTGAT
CCCAGGAAGC
CCGCAGGTGC
AAGGGCACTC
AAGAGTTCTC
AGGAGCCGGT
AAGCGCTGCT
GGTCTTTGGC
CCCTTGTCAC
TCATGCCCAA
GAGGGCAAAT
GAAGGTGTAT
TGCTCACCCA
CCAGCAGTGA
GCTGCTTGAA
ATTTCCTACC
CACAAAGGCA
TTCCTGAGAT
ATTGACGTGA
CTGCCTGGGA
GACGGGCCTC
GCGTCCCTGA
GTTGGGAGGG
AGATTTGGTG
TCCCATATGC
AGTACTGGAG
CATCCCTGCA
GAGiAGA AGAGGG AGTCTG~AGCA TGAGCTGiCAG 19 ;CGAGGGGG GCTGGGCCAG TGCACCTTCC AGGGCTCCGT 1642 CCTGCCTT AATGTGACAT GAGGCCCATT CTTCTCTCTT 1692 ;TCAACATT CTTAGTAGTG GGTTTCTGTT CTATTGGATG 1742 'GTCTTTGT TTCCTTTTGG AATTGTTCAA ATGTTCCTTT 1792 ~GAATGAAC TTCAGCATTC AAATTTATGA ATGACAGTAG 1842 CTGTTTAT ATAGTTTAGG AGTAPLGAGTC TTGTTTTTTA 1892 LAATCCATT CCATTTTGTG AATTGGGACA TAGTTACAGC 1942 LATTCATTT AGAAATGTGA ATGAGCAGTA AAACTGATGA 1992 ~AAAAGATA TTTAATTCTT GCCTTATACT CAGTCTATTC 2042 SUBSTITUTE SHEET r WO 92/20356 PCr/US92/04354
GGTAAAATTT
TGAGAATGTA
GGCTCATTTA
GTTAATAGTG
TAGTAAAGTC
CTAAGATGTA
TTTTTTAAAA
AGACAAATTA
TTCTCTATGC
GAGATGCTAA
TAGGAGCAGC
GAG
ATGTGCATAC
AATCTGAATA
ACTGAGCATT
GGTAAGCCAG
AGTCATATAA
CTGGATTTCC
AATCATTCTC
TGCTCTGTGG
3RCTCACCCCT
TTAAGGTGGA
TTGGCTTCTT
CCTGTTCACT
AAGGCCCTGG,
ACCCACAGGG
GAGATGCCCT
2092 2142 2192 2242 2292 2305 SUBSTITUTE SHEET I-s~ WO 92/20356 PCT/US92/04354 INFORMATION FOR SEQUENCE ID NO: 18: SEQUENCE CHARACTERISTICS: LENGTH: 225 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: NAME/KEY: MAGE-6 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 18:
TAT
CAG
GGC
GAT
TTC
TGT
TTT
GTC
GTG
CTG
ATA
CCT
CCT GTG TTT GGC TAC ATC CTG GGT ATC ATC GAG GAG SUBSTITUTE SHEET WO 92/20356 PCT/US92/04354 INFORMATION FOR SEQUENCE ID NO: 19: SEQUENCE CHARACTERISTICS: LENGTH: 1947 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-7 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 19:
TGAATGGACA
GAGCCCAGCC
TGGCCGGCTG
GCGGACAGGC
ACCGAAGGAG
GGTTCACAAA
GTTCCTCCCC
CCAGAGTCAT
GATGCCTTGA
GCTCCCGCCA
AGGCACCCTG
GTCTCAGGGT
GCCAATCCAG
TAGACACACC
ACAAGGGCCC
TCACCTTCCC
TACCCTGAGG
CGGCCAGGAG
AAGATCTGTA
TGAGGCCCCT
ATCGCCCAGC
CATGTCTTCT
GGCCCAAGGA
CCGAGGAGCA
GAGGAGGTGC
TCCTCCTTTT
TGAGGGCACC
CCGCTCACCT
CACACTCCCC
TACTGTCAGT
TGCCCTCTCA
GTCAGAAGCC
AGTAGGCCTT
CACAAGCTCC
TGCTGCCCGC
GAGCAGAGGA
CAGGAGGCTC
CGAGGCTGCC
CTGCTGCTGG,
CCCTGACCAT
AGCAGCCGOG
GGCGTCCTTG
AGAACACAAG
CCTGCAGCCT
CTTCCTCCTT
CCAGGAGGCC
TGTTAGGGCC
TTCTCTCCCC
ACTCCAGCCT
GTCAGCACTG
TGGGCCTGGT
TCCTCCTTCA
GTCCCCCAGT
CAGCAACAAC
AAGAGGAGGG
TTCCA
GGACTCCAGA
CAGCCTCTGC
CAGGTTCTCA
CCAGAGGAGC
TCCAGGGCGT
AGATCTGTGG
GCTGCCCTGA
CA.AGCCTGAG
GGGTGCGCAG
CTCTGATTGA
CCTCCCCTGA
ACTCTATGGA
GCCAACCACC
ATG
ATC
GTG
GGC
ATG
CCT
AGA
GGA
GAG
TCA
AAA
AAG
GCT
GCA
AGG
TCA
TCA
GCC
GAA
TG
TGC
TGG
AGG
AAA
TCA
GTG
GCC
CCG
TTATGGTCTT
GCAATCTGGG
TCTTTGGGCA
TACCTGCAAT
CCTGTGGGGT
AGTATGCAGC
CATGAAGAGG,
AGCCAGGGCC
CACACATCCA
CTGTGTTTGA
GTGTGAGGGA
GATTTGGAGG
TTAATGGATG
GCAGACTTAC
TTATGTAAGA
CAGAGGATTA.
GTGAGATAAA
CCTGTAATCC
GGAGATCGAG
AATACAAAAC
GACCATGAI
AAGCGTTG;
GCTGAGGAI
ACCGCCAGC
CCAAGGGC(
CAGGGTCAC
CTTTGGGAC
AGTGGGGC~
CCACCTTC(
AGAGAGCA(
ATACAAGG~
TTTATCTT
GTGTAATG
TGTTTTTT
AAATCTAT4
AGTACCTT'
GAAATAAAI
CAGCACTT
ACCATTCT'
TTAGCCGG
AGT TGG TTC OCT TOG TCA CAA AGG ACA AGC ACT AGT TGC ATG CAG GTG CCC GCG GCC ACT CCT ACA ATG 0CC CCG GCC TTC TGA 'C TTAATGGAGG 0CC ~G TGTAATGGTG TAI ~G CTGCTCACCC AAC T GCCCAGCAGT GAI C TCATTGAAAC CAC T ACTAAAGAGA GCI ;A GGAGGAAGAG GGJ kG ATTGGGGGAG GG( C TGTCCTGTTA CA.
GT CAATGTTCTC AG' TG GACCATCTCT CA( TG TTTCCTTTTG, CA AiA CTTCAACATT CA ALT ATAGTTAAAA GT GT TATTTCTTGA AT TT ATAATGTGAA AG~ ~A AATTAAATTG GC TA GGAGGCAGAG GC, GG CTAACACAGT GA ~C GTGGTGGCGG GT TCC TGC TGC ACA CAG AAA TGC TG TTC CTT GTG ATC ATO TTT GGC ATT CCT ACO TCC TTG TGC TGG GTG ATG
ACTGTGC
~GATGGGA
ATTGGGT
6CCCCCGT
CTATGTG
kTTTCCTA kGTCTGAG
.CTGGGCA
LGAGGCCC
rAGCGGGG
~TTCCTGT
3TCGTTCA
~TTCATGT
PiAGTGCAT
TGGGACAA
PiACAAAGC
TGGGCACG
~CGGGGAT
NACACCAT
G
CCCTGAGGAG
TGGAGCAGTT
GCAGGAAAAC
GCTACCAGTT
AAAGTCCTGG
CCCATCCCTG
CAGAAGTTGC
GTGCACGTTC
ATTCTTCACT
AGTGTGTTGG
TCTCTTGGGC
AATGTTCCTT
ATGACAGTAG
TGTTTTTTAT
CATAACATAG
GGTAAAATGG
GTGGCTCACG
CACGAGGTCA
CTCTATTAAA
964 1014 1064 1114 1164 1214 1264 1314 1364 1414 1464 1514 1564 1614 1664 1714 1764 1814 1864 1914 1947 SUBSTITUTE SHEET
I
I
WO 92/20356 PCT/US92/04354 INFORMATION FOR SEQUENCE ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 1810 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-8 gene (xi) S8QUENCE DESCRIPTION: SEQ ID NO:
GAGCTCCAGG
TCACAGAGCA
GTTTCCCCTG
ACCCCACAGT
GCCTTTGCCA
GGTTCGCAGA
CTGAAGAAGA
CCCAGCTGAG
CAATTGCCCA
AACCAGGCTG
TAAGAGGCCC
TATGTATACC
TCCTGGCCCT
GGAGGCTGCA
GAACAGGCCA
CCTGTAAGTA
GCCTCTCACA
TGAGGTCTTG
AGGCAGTAGT
AGAGGCCCCT
ACCAGCCCTT
CCCTGAGATG
GCCAGGAGGT
GACCTTTGTT
CGCTTCCTCT
GTCTGAGGCA
AGCAGTCAAG
CTGGCATCAG
TTGTCAGTCC
CCCTCTCAAT
CAGGAGGCCC
AGGGCATCCA
CTCCCCAGGC
GTATCTTCAA
CTGAGGTGGT
AACAGCAGGA
TGGAGCCTTG
TTCTCCTTCA
CAGAGAAGCA
GGGTGTAGTA
CTGTGGGTCT
CCTGAGTCAT GCTCCGGCCC ACACTCTCCT GCTGCCCTGA
ATG
GGC
CAG
TCT
GGG
TCC
GAG
CCG
GAT
TAT
AGT
AGC
GTG
ACC
CAG
ATG
TG
CTT
CAG
CCC
CTG
CCA
ACT
TCC
CCA
AAA
ATT
ATC
GCC
GAA
CTG
ACG
TTA
GCA
GGG
GCC
ACA
ATC
AGT
GTC
AGC
GCT
GTG
AAG
AAA
TCT
GTG
GGC
CCC
ATG
TTG
AAG
GGA
GAG
GGA
CCC
GAC
AAT
CTG
GAG
CCG,
TAC
TGC
CCT
TCC
ACC
GGC
GTG
AGT
GAr(j
GAG
ACC
CAG
AGC
GAA
GAG
TTA
GTC
AAG
ATG
GCC
TAT
GGC
AGC
ATG
CGC
CCA
AAG
GAG
CCT
CTG
GAG
CTG
CGT
AAG
CAC
GTG
CAC
GGC
CTG
GCC
GCT
TAC
GGG
GCT
GAG
GAG
TOG
GGG
TTC
TTC
GCA
TTT
ATC
TCC
CTG
ATA
CCG
GTA
AAG GCT CTT ATG GCA TCC GTG ACT GGT GCC AGC CAA CCA AGC CGG GAA CTG CTC GAA ATG CCT GAT TTT GGC TAC ATC CTG GOT ATC GTC GAG GAG
TGA
GAG
GAT
TCC
GAT
TCC
TCC
ACC
GCA
CGC
CTT
ATC
ATT
CTT
GAT
CTG
GCA
GAA
GTG
TCC
TCT
TCT
OAT
TCC
CTT
AAA
GAG
TTC
GAT
GTC
GAT
GGC
ATC
493 535 577 619 661 703 745 787 829 871 913 955 997 1039 1081 1123 1156 1206 1256 1306 1356 1406 1456 1506 1556 1606 1656 1706 1756 1806 1810 TGGGAGC GAG
AGTGGGTGCA
CCTGTGCGCT
CTATGTGAAA
TTTCCTACCC
TGAGCAGGAG
GGCCAGTGCA
ATGAGGCCCA
GTAGTGGGGA
AGTTCCTGTT
AATTGTTCCA
ATTTTATGTA
GTAAGAGTCT
ATTC
CACAGTGTCT
GGAGAACTAC
ACGAGTTCCT
GTCCTGGAGC
ATCCCTGCAT
TTGCAGCTAG
CGTTCCAGGG
TTCTTCACTC
GCATGTTGGG
CTATTGGGCG
ATGTTCCTTC
TGACAGTAGA
TGCTTTTCAT
ATTGGAAGCT
CTGGAGTACC
GTGGGGTCCA
ATGTGGTCAG
GAAGAGGCTT
GGCCAGTGGG,
CCACATCCAC
TGTGTTTGAA
TGTGAGGGAA
ATTTGGAGGT
TAATGGATG
CAGACTTACT
TTATACTGGG
CAGGAAGCTG
GCCAGGCGCC
AGGGCCCTTG
GGTCAATGCA
TGGGAGAGGA
GCAGGTTGTG
CACTTTCCCT
GAGAGCAGTC
CACAGTGTGG
TTATCTTTGT
TGTAATGAAC
GCTTTTTATA
AAACCCATGT
CTCACCCAAG
CGGCAGTGAT
CTGAAACCAG
AGAGTTCGCA
GAAAGGAGTT
GGAGGGCCTG
GCTCTGTTAC
ACAGTTCTCA
ACCATCTCTC
TTCCTTTTGG,
TTCAACATTC
TAGTTTAGGA
TATTTCTTGA
SUBSTITUTE SHEET pp.~ WO 92/20356 PC7/US92/04354 INFORMATION FOR SEQUENCE ID NO: 21: SEQUENCE CHARACTERISTICS: LENGTH: 1412 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-9 gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 21:
TCTGAGACAG
AGCAGTGAAG
GCCCCAGCAC
TCACTCATAG
TCTCACTTCC
GCCCCAAGAG
TGTTAGAACC
CTCTCTCCCC
TGTCCTCAGG
GTGAAGTGTT
ACATGGGACC
AGCCTTGATC
TCCCTCAGGT
GCCCCAGAGC
TCCAAGGTTC
AGGCCTGTGG,
TCGCAGAGCA
CACCCTGAAT
CCATAGCACC
TCTGCAGGCT
TCTCGGGACA
AGCACTGACG
GGTTCTCAGC
GTCTCCATCG
GAGGAGACCC
GTGCACCAAG
TGGCCCCATT
AGCTGCACGC
GGCTAACCAG
AAGACCTGTA
TGAAGTCTCT
CCCAGCTCCT
AGGCAGTGTC
GGCCrCACCT
CCCCCTACTG
TGAGTAGCCC
GAGGACAGGA
AGTCAGCCTT
CACACACTCC
GCCCACGCTC
CTGACTGCTG CCCTGACCAG AGTCATC ATG TCT GAC CTT CAG GAA GAC AGC CCT CCC GTC TAC AGT CAA CAG CTG GCT GAG GAG CCG AAT TAC GAG TTC GAC CCC CTC TCG AAG, GCC AAA GAC AGT GTG GGG GAG AAC TAC CAC TAC AGC TAT AGA GAG GGA GAG
CTC
GAA
CCC
AAG
CAG
TAC
GAA
GAG
TTG
GTC
AAG
ATO
GCC
TGC
GCC
AAC
ATG
CCC
CTG
GAG
GAG
CCC
GAG
GAG
GCC
ACA
GAG
AGT
ACT
GAG
TTC
GTT
ACA
CGC
CAG
GGC
GAT
CTC
TGC
GG
AGG
GAG
TTC
AAG
ATC
CAA
CAG
CAA
GGC
GAG
CCT
TTA
GAA
ATG
CAT
AAG
TAC
GTG
CAC
AGC
CTG
GCC
GTG
AAG
TAC
CTG
GTC
TGC
GAG
AGO,
GGA
GAG
GAG
CAG
TGG
GAG
TTC
TTC
GCA
TTT
ATC
TCC
ATG
ATC
CCT
TAT
CTG
CG
TGG
ATA
TAC
GGA
AGT
GAG
GAG
GTG
OGA
AGC
CCA
CAA
CTG
GAA
CCT
TTT
TAC
CTG
ATT
GAA
OTT
CTC
CAG
GT
AAT
CCA
GTC
CCG CAC GAC TTG GAG GAG TCT GCT GGC GCT CAA TTC AOC TCC GAA GCA CTC CAC ATO CTG OTG ATC GGC ACT ATC CTT GGT GAT GTC CTG GAG GTT GGG AAG ACC CAA GTG CCC TCC AAG TAT TTG TCC CTT
TGA
AAG
CTG
ACC
GGG
TCC
GAG
GTC
AAA
TAT
AGC
GGC
GTG
ACT
CAT
GTG
TGG
CAC
TGG
AGT
CAC
ATO
GAA
CCT
ATG
TCC
TCA
TCC
GC
GAC
TG
CGA
GTC
AAA
AAG
GCT
AGC
ATC
GAA
ATG
GTG
GAT
GCT
CTC
GAG
GAT
GGT
TCC
TCA
ATT
TCC
CCA
AAG
GTC
ATC
GCC
GAG
CTT
ATG
CTA
GCG
TTC
CAG
CCT
GAA
AAT
GTT
GAA
GCA
TCT
AGT
TCC
AGC
GCT
GTG
AAG
AAA
TCC
GTG
GGC
CCC
ACC
TTG
TAC
GAA
GCG
ACC
GCA
TTG
100 150 200 250 300 350 400 427 469 511 553 595 637 679 721 763 805 847 889 931 973 1015 1057 1099 1141 1183 1225 1267 1309 1351 1375 1412 GCACCAGCCO CAGCCGGGGC CAAAGTTTGT GGGGTCA SUBSTITUTE SHEET Ii :ew.
~1a.l Wj
A
r WO 92/20356 PCT/US92/04354 INFORMATION FOR SEQUENCE ID NO: 22: SEQUENCE CHARACTERISTICS: LENGTH: 920 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-10 gene (xi) SEQUENCE DEf:CRIPTION: SEQ ID NO: 22:
ACCTGCTCCA
CTGTCAGTCC
CTCTCACTTC
AGAGCTGTGG
GGCCTTTGTT
CCCTCCCTCT
ACACTCCCAC
GGACAAAGTG
TGGAGCCTTG
CTTCTTCAGG
GACACCACAG
AGAACCTCCA
CTCCCCAGGC
CTGCTACCCT
GACCCCACTG
GCCTCTGCCG
TTCTCAGGGG
AGCAGCACTG
GGGTGTGGTT
CTGTGGGTCC
GATCAGAGTC
CATCAGCTCC
GCTGCATCCT
ACAGGGAGAG
AAGGAGAAGA
CTCAGCTGTG
CCATCGCCCA
ATC
ACCTACCCTA
GAGGAGCCAT
CAAGAGGTCA
CCTGTAAGTT
GCCACTTACA
AGTCCTGCCC
ATG CCT GAT CTT CAG GCT TCC ACC TCT TCC CCA GAG CAG AGT TCC CTT AAG GAG GAG TCT TTG GTG ATC ACA GAA GAC ATG CTG CGA GCT CAA TCC CCC CTG AGC TCC TCC TCC GAG GTT GCT CAG CCA TTA GAG AGT TTA CCC CAG TTT AAG GCA CAC TTC CTG GTC
CCA
CAA
OCT
TCT
TCC
TCT
ATA
GAT
CCA
AGA
CTG
GAA
CCT
TTT
AAG COT AGT GAG GTG GAG TTT CCA TCC TGC GCT GAT GCC TOC CAA TCT AGC ACC AGT GAG CTC TTC ATA CTG TTG TTG GGC ATT
CAG
ACA
GAG
TCC
TAT
GAT
TCC
GAT
CTA
ATA
AAG
GAG
TTT
GAT
COC
CAG
GAT
TCT
CCT
GAG
TCC
GAG
CAG
GAT
TAT
AGT
AGT
GTA
ATG
CTC
TCA
CCC
ATA
CCA
TCG
TCC
CTG
AAG
ATG
ATA
(ICC
G AA
CCT
GAG
TCA
TCC
CCA
AAT
GTC
AGC
CCA
GTG
AAG
AAA
TCC
GTG
s0 100 150 200 250 300 333 375 417 459 501 543 585 627 669 711 753 795 837 879 920 SUBSTITUTE SHEET p WO 92/20356 PCI'/US92/04354 9~3 INFORMATION FOR SEQUENCE ID NO: 23: SEQUENCE CHARACTERISTICS: LENGTH: 1107 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: MAGE-1l gene (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 23:
AGAGAACAGG
CACTGGAGGA
CATATCTCAT
GGCCCCATCA
AGTCATCATG
CCTTCAGGCC
AAGCTGAGGA
ACTCTAGAGG
TCAGGAAGAG
TATCTGATGA
CCTGACCTGA
GATAATTGAT
CCAACCTGGA
GAACAAGTGT
CTGAGTCTGT
CCCAGATATT
CCTCTTGAGC
CAAGAAGAAG
GCAGGAGGCT
AGTTGCCTGC
TCCTTCTCTC
GGGCTCTGGC
TAGACCCTGA
TTGGTTCATT
GGACAGGAGT
AAGTAGGCCT
TCTCACGCTC
TCCCACAGTT
AAAGAAGTCA
ACCTGGGCCT
GCCTTCTTCT
TGCTGAGTCA
CCACTGCCAT
AGCCAAGAAA
GTCCTTTTCC
TATTCTCCGC
CCCAGGAGAA
TTGTTAGATT
CCTCTCTCCC
CGGCCTGCTG
GCACTGCAAG
GGTGGGTGCA
CCTCTACTCT
CCAAGTCCTC
GGATGCCATC
AGGAGGGGCC
CAAGATATAC
AAGTATCGAG
CCCAGAGGAT
CTCCATGGTT
CAGGCTGTGG
ACCTAACCAG
CCTGAGGAAG
CAGGCTCTC
GAATGTGCLGC
CCCAGAGTCC
TTTGGGAGCC
AAGTACCTCG
TACATGACAA
TCAAGGGGCT
GATCACAAAG, GCAGAA 100 150 200 250 300 350 400 450 500 550 600 616 658 700 742 784 826 868 910 952 994 1036 1078 1107
ATG
GAG
GGC
GTC
TGT
GTC
GAG
GGA
ACC
GTG
CCA
TAC
AGT
AGG
GTG
ACC
CAG
GTA
TGG
CAC
TGG
ACT
CAC
AAT
GTC
GAA
AAG
TCC
AGC
ATC
GAA
TTC
GTG
GAT
GCT
GCC
AAA
TCT
GTG
AAC
CCC
ATG
CTG
TTT
GAA
GCA
ACC
GG
AAT
GTA
GAC
CTC
AAG
GAG
AGC
GGG
AAG
TOC
AGC
AGG
TAT
TGC
CCC
TCT
TCT
GGG
ATT
GAG
TAC
TAT
AAG
GAT
GAG
ATG
ACT
TAT
GGC
AAC
ATG
CCC
CTG
GAG
ATG
cc
TTT
CTC
TCC
ATA
ATA
CCT
TAT
CTC
CG
TG
CTT
SUBSTITUTE SHEET im-.E~,
S
WO 92/20356 PCr/US92/04354 9 L INFORMATION FOR SEQUENCE ID NO: 24: SEQUENCE CHARACTERISTICS: LENGTH: 2150 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: smage-I (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 24:
TCTGTCTGCA
CTCTACAGAC
ACAGGTTTCT
TATACCCCTG
GCCCTTGTAT
AAGCTAGTGA
ATGCAGTGGC
AGCTTGATCC
TATGCCTCCA
CTCTGTCTGT
GCCCCTGCAT
CATTGTAAGT
GCAGGCCTAA
AAGATCTAAC
CTAACAAGTT
ACGAGTTCAG
CTTGTGTGTA
GTCTGGCACC
GGAGCTTAAA
TTAAGTGGCT
GTTTTTCTGT
CCACTTTTGG
TTAATTTCTT
AAGTCCTGGT
GCAGTCTCAA
CTAAGTGGCT
TAGATCTTTC
TTATGTGGAT
CTGCTTAACC
AAGTCTGAAA
CCACAGGGTT
ATGTTCCTAG
ATG
CCA
TGT
ACT
AGT
GAG
TCT
TCT
GGT
GCT
GG
AAG
ATG
AAC
ACT
GAA
CTG
TTG
TTC
TTT
ATC
GAA
CCA
ACA
GGC
CTT
GC
AAC
TTC
AGG
CAT
TCA
AAG
GTT
CCT
GCT
GTA
GTC
ACT
GCT
AAA
AAG
TCT
ATT
GGT
CCT
ATG
CTG
TTT
AAT
AGC
ACC
ACA
AGA
AAG
ATO
TCC
TAT
TCT
GCC
ACC
CCA
GTT
CCT
TCC
CTG
TCC
AGT
GAA
AAG
GCA
GAT
CTT
AGO
AAG
CAT
GGC
TAC
TAT
AAG
GTC
GAT
GGT
TAG
AAA
CTA
CCT
AGC
TCC
GTT
CAG
GOT
ACA
GAT
GAG
CTG
GTT
AAG
CTA
AGC
ACT
GGT
AAC
GTG
CCT
GAG
TTC
AAA
AGT
GCA
CAT
GCT
CCT
TCC
ACA
CGT
CAG
AGT
GTG
GGC
ACA
CAC
ATA
ACA
GAG
GAA
ACT
GAG
CTC
CGT
GGG
GAG
TAC
CTG
GTC
GCC
GGA
TCC
TCA AAA GGT AGT AGA TTC GTC AAC GCA AAA CCC ACT OCT GGG AAA ACC TCT GGT AAA AGT ACA CTG GAA TTC AGG AGT CAA TTC TTA GTC CAT TCC GGA AGT CTA ATG GCC ACT GTA TAT GAG TTT CGC CAG TGG GGA CTG GAA TTC CCT GGG GTG AAG GCC
GCC
ACA
CTG
ATG
CGA
GCA
TCC
CCT
ATA
TCA
AAA
CTG
GAA
CCT
TTT
TAT
TTG
TCT
GAG
GCT
ATA
GTA
CCC
GTT
AAT
CCA
CCA
TCT
GTA
GCC
AGG,
CAG
GAA
TTC
TCT
GT
GGC
CCT
GAT
CTG
ATC
CTT
CTG
AGT
CTA
GAG
AAG
GAT
GGC
GCC
GCT
TAC
AGG
CAA
ATGGATCTCT
TTGCATGGGC
TCCACAGGCC
ACAGGTCTCT
CCTCCAAGTG
CTAGACTTTT
TGCAGAAAAG
AAAG
CCA TTA AG7 CTT ACA GG'I AGC TCT TT7 GGT CAA AAG TCA CGC AGG GCA GGG TC7 CCT GGT GGI TTT GGT GCP AGA AAT GC7 ACC CAG GCP ATC ATG AGG AAA TTT AAG GCA GTA GT7 CTC AGG, AGP GAG TTG AAC GTA GGC AAP AAC TOG GGG GGT GTG ATC GTC TGG CAP AAG CAC TTC GTA GTG CGC.
AGT GAT CCC CAT GCT GAP AAA GTC AA1I CAG TTG GC1 AGA OTT CAP AAG TCC TC1
TAATCAGTAG
GGCCTGTTAT
GTTTGTTTAA
AAGAGGTAAC
AAACTGGAAA
394 436 478 520 565 604 646 688 730 772 814 856 898 940 982 1024 1066 1108 1150 1192 1234 1276 1314 1360 1402 1444 1486 1528 1537 1587 1637 1687 1737 1787
TTGAGTCTGT
AGAGTTCATA
ACATTAGTAG
CTAAACAGTG
TGTCACTTGT
TCTGTTOTOT
GCCTACCAGA
AATGGAGGCT
CTTTTTGCCA
CAGATTAGGA
TTGAAAAACA
ACCAACATGC
ATTTTTGTTA
TGCTTCTTGT
CTTGTTTTOT
GTCAGGCTCC
ATCCATTCTT
CTTTTCAAAT
TAACTGCATA
TATTTGCAAC
SUBSTITUTE SHEET WO 92/20356 PCI'/US92/04354
ACATTATTTT
GATTGTCATG
GGAAAGTTTA
TACTTTTTTC
GACTTTACTC
TTATTTTCTT
GTAGCACAGG
GTTATCAGAG
GTTTTTACTA
GCAATGTGAT
TATTGTTAAT
TTTTTTGTAT
AAATTCATTA
CAATTATGAA
ATCTAGTATG
TCT
AAACATTGTG
ATCATACAGT
TTTGAAAATT
AATGCTAAGT
GAAAGTAAAT
TTAAGCATTG
AAATGTATCT
TAACATTGCA
GGTGAAACAA
TTATGAGTGT
GAAATAAAGT
CGTAAAACTC
GTTATCTGGA
AGTATAGGCA
TTGGAGAAGG
CAGTGAAGTG
GATTGCTGTA
TGGATTTGAT
TATTACTTTA
AGTTTCTCCA
CTGACAGTGA
1837 1887 1937 1987 2037 2087 2137 2150 SUBSTITUTE SHEET tm.u,~ PMTUS92/04354 WO 92/20356 96 INFORMATION FOR SEQUENCE ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 2099 base pairs TYPE: nucleic acid TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (ix) FEATURE: NAME/KEY: Bmage-II (xi) SEQUENCE DESCRIPTION: SEQ ID NO:
ACCTTATTGG
AATGGATCTC
TTTGCATGGG
CTCCACAGGC
TACAGGTCTC
CCCTCCAAGT
ACTAGACTTT
TTGCAGAAAA
GAAAGATGTT
AGGTATTCTC
TCTTTCCAGA
TCAACATGCC
CAGCAGTCAC
AGGGTCTTCT
CTGCTCCTCA
TGCACAGGCT
AAAAAGTTCA
AAGATCCTAT
AAGTTTAAGA
TAACAAGAAG
CACCCCTAGA
ACTCATTCCT
TTTGAGTAGT
TAGGTGTGAT
CAATTTCTGC
TGGCGAGCCT
AGTACCGCCA
GGACCCAGAG
AGCTAAAGTC
TGGCTCTTAG
AAGGGTGTTC
GAGTCTGTTC
AGTTCATAGC
ATTAGTAGAA
AAACAGTGCT
TCACTTGTCA
ATTATTTTGT
TTGTCATGGC
AAAGTTTATA
CTTTTTTCTT
CTTTACTCAA
ATTTTCTTCA
GTCTGTCTGC
TCTCTACAGA
CACAGGTTTC
CTATACCCCT
TGCCCTTGTA
GAAGCTAGTG
TATGCAGTGG
GAGCTTGATC
CTCCTGGAAA.
TACCTGGTAG
TTCCTGTCTG
TAGGGGTCAA
GCAGGGAGGT
CCTGTTGACC
GGGTGTGAAA
CTGGTATAGG
GATGGCACCC
CATGAGGAAG
TGAAAGAAGC
TATAAGGAGC
ATTAGTCTTT
ATTTGCTGGT
AACTGGGGGT
CTTCATGAAG,
ATGGAGTGGG
GAGGAGTTTA
GGTACCTGGC
CCCATGCTGA
AATGGCACAG
AGATCAGGCA
ATTCCAAGGC
TGTTGTGTTT
CTACCAGAAC
TGGAGGCTAT
TTTTGCCATG,
GATTAGGACT
TTTTACTAAA
AATGTGATAT
TTGTTAGTTT
TTTTGTATAA
ATTCATTAGA
ATTATTAATT
ATATGCCTCC
CCTCTGTCTG
TGCCCCTGCA
GCATTGTAAG
TGCAGGCCTA
AAAGATCTAA
CCTAACAAGT
CACGAGTTCG
GCTTCAAAAG
TACAGAGGTA
CCAGCTCTTT
AAGAGTAAGA
TCCAGTAGTT
AGAGTGCTGG
ACCCCTGGAT
TGGTAGAAAT
AGGCAGGGAC
GCTAGTGTGC
AGTTACAAGG
AATTCCCTGA
GGTCTTGAGT
AGGCAAACTG
TGCCTAGGAC
GGTAACCGTG
GGTATATGCT
TAAGAGATGT
AGTGATCCCC
AACAACCAAG
TCCCTAGTGC
GGAGGGGTGC
CCCATCCCAA
GAAAAACAGT
CAACATGCAT
TTTTGTTACT
CTTCTTGTTA
TGTTTTGTTA
ACATTGTGTA
CATACAGTGG
TGAAAATTTT
TGCTAAGTGA
AAGTAAATCA
AAGCATTGGT
ACTTGTGTGT
TGTCTGGCAC
TGGAGCTTAA
TTTAAGTGGC
AGTTTTTCTG
CCCACTTTTG
TTTAATTTCT
GAAGTCCTGG
CCAGGTCTCC
CTTACAGGTT
TACTTCAGCC
CCCGCTCCCG
CAGCCCACTG
GTCCAGCTTC
CTTTTGGTGC
GCTGCTGTCC
TTCCATTCAG
TGATAGAATT
AGTGAAATGC
GATCCTCAGG
TGAAGGAAAT
GGTCTTTCCA
AGGTCTCCTA
CCACTGAGCA
GGGAAGAAGC
AGTGCGGGAA
CAAGCTATGA
ATGAAAGTCC
CTTCCCTAAT
CAAGAAGGAG
AAGTCCTCTA
CAGGCTCCTA
CCATTCTTGG
TTTCAAATGT
ACTGCATAAA
TTTGCAACAA
ACATTGCATT
TGAAACAACA.
ATGAGTGTGA
AATAAAGTTG
TAAAACTCTA
TATCTGGAAG
AGCAGTCTCA
CCTAAGTGGC
ATAGATCTTT
TTTATGTGGA
TCTGCTTAGC
GAAGTCTGAA.
TCCACAGGGT
TATGTTCCTA
ATTAAGTCCA
GTCATTCTTA
CTGAGCACAG
TGCAAAACGA
CAGAGGAAGC
CCTGGTGGTT
AGGTGTATCC
TGCCTGATAC
CACACACTGA
CCTGCTAGAT
TGGCAGTAGT
AGAACTTCTG
TGATCCCAGC
CTGAGGGAAG
ATGTCTGTCC
AGAGGTCTGG
ACTTGATCTT
AATTACCTGG
GTTCCTGTGG
TGGAAGTTTT
CTCTACCAGT
AGTTCAAGGC
ACATGTAGTT
ATCAGTAGAG
CCTGTTATAC
TTGTTTAACT
GAGGTAACTG
ACTGGAAAAC
GGAGAAGGGA
GTGAAGTGGG
TTGCTGTATA
GATTTGATGA
TTACTTTATT
TTTCTCCAG
100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1600 1650 1700 1750 1800 1850 1900 1950 2000 2050 2099 SUBSTITUTE SHEET
-L
WO 92/20356 57 INFORMATION FOR SEQUENCE ID NO: 26: SEQUENCE CHARACTERISTICS: LENGTH: 9 amino acids TYPE: amino acids TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 26: Glu Ala Asp Pro Thr Gly His Ser Tyr PCr/US92/04354 SUBSTITUTE SHEET
Claims (28)
1. Isolated nucleic acid molecule which codes for a tumor rejection antigen precursor, or (ii) is complementary to a nucleic acid molecule which codes for a tumor rejection antigen precursor, wherein said tumor rejection antigen precursor hybridizes to the nucleotide sequence set forth in SEQ ID NO: 8, under stringent conditions.
2. The isolated nucleic acid molecule of claim 1, wherein said molecule codes for a tumor rejection antigen precursor.
3. Isolated nucleic acid molecule of claim i, wherein said molecule codes for a human tumor rejection antigen precursor.
4. The isolated nucleic acid molecule of claim 1, wherein said molecule is complementary to a nucleic acid molecule which codes for tumor rejection antigen precursor. The isolated nucleic acid molecule of claim 1, wherein said molecule is DNA.
6. The isolated nucleic acid molecule of claim 1, wherein said molecule is RNA.
7. The isolated nucleic acid molecule of claim 1, wherein said molecule is a gene.
8. The isolated nucleic acid molecule of claim 5, wherein said DNA is genomic DNA. :B n i' 1 r 1 staffaWahleenlkeep/21583.92.vs 13.4 r-98a
9. The isolated nucleic acid molecule of claim 5, wherein said DNA is cDNA. staff/ahIeer/keept21 5B3.92.vs 13.4 (r Scl ri/r Iv JUN 1995 PCT/jS 92/04354 The isolated nucleic acid molecule of claim 6, wherein said RNA is mRNA.
11. The isolated nucleic acid molecule of claim 4, wherein said molecule hybridizes to an isolated nucleic acid molecule which codes for a tumor rejection antigen precursor, under stringent conditions.
12. The isolated nucleic acid molecule of claim 1, wherein IN#an 4urvno- refu, rbn said molecule codes for a 'MAG antigen precursor or is uman f4rvo ry'enoCb' complementary to a molecule which codes for aVWAGN antigen precursor.
13. The isolated nucleic acid molecule of claim 12, humwi -tumor miec-hbe wherein said +4-A antigen precursor is selected from the group consisting of mage 1, mage 2, mage 3, mage 4, mage 5, mage 6, mage 7, mage 8, mage 9, mage mage 11, smage I and smage II.
14. The isolated nucleic acid molecule of claim 12, wherein said molecule codes for a MAGE antigen precursor. The isolated nucleic acid molecule of wherein said molecule is complementary to which codes for a MAGE antigen precursor.
16. The isolated nucleic acid molecule of wherein said molecule is DNA.
17. The isolated nucleic acid molecule of wherein said molecule is RNA. claim 12, a molecule claim 12, claim 12,
18. The isolated nucleic acid molecule wherein said molecule is a gene. of claim 12, SUBSTITUTE SHEET IPEA/US L p r p. ib i' fcu fui/-u i JUN 1995 PCT /JS 92/043 54 /OO
19. The isolated nucleic acid molecule of claim 16, wherein said DNA is genomic DNA. The isolated nucleic acid molecule of claim 16, wherein said DNA is cDNA.
21. The isolated nucleic acid molecule of claim 17, wherein said RNA is mRNA.
22. The isolated nucleic acid molecule of claim 12, comprising a nucleotide sequence set forth in figure 9.
23. The isolated nucleic acid molecule of claim wherein said molecule hybridizes to a molecule which codes for a MAGE antigen precursor under stringent Sconditions. i 24. The isolated nucleic acid molecule of claim 1, wherein Ssaid molecule codes for a tumor rejection antigen precursor for mastocytoma. The isolated nucleic acid molecule of claim 1, wherein said molecule codes for tumor rejection antigen precursor P1A. -II
26. The isolated nucleic acid molecule of claim 1, having Sthe nucleotide sequence of figure
27. Biologically pure culture of a cell line transfected with the nucleic acid molecule of claim 2.
28. Biologically pure culture of a cell line transfected with the nucleic acid molecule of claim 12.
29. Biologically pure culture of a cell line transfected with the nucleic acid molecule of claim 22. SUBSTITUTE SHEET IPEA/US i p..7 11 16 Rec'd PCT/PIU I I n 1993 PCT, US 92/04354 101 Biologically pure culture of a cell line of claim 27, selected from the group consisting of P1A.T2 and P1A.TC3.1.
31. Biologically pure culture of a highly transfectable cell line derived from a parent cell line which expresses at least one P815 tumor antigen, wherein said highly transfectable cell line does not express any of P815 tumor antigens A, B and C.
32. Biologically pure cell line of claim 31, comprising cell line PO.HTR.
33. Biologically pure culture of a cell line of claim 27, wherein said tumor rejection antigen precursor is a human tumor rejection antigen precursor.
34. Biologically pure culture of a cell line of claim 33, wherein said human tumor rejection antigen precursor is found in melanoma cells. SUBSTITUTE SHEET IENUS i 16 R 06C'd FCJ/FITO I1 JUN~ Jtq
9204-354 lo?-. Biologically pure cell line of claim wherein said tumor rejection antigen precursor is mage-l and said isolated nucleic acid molecule consists of nucleotide sequence: 12 121 301 3C: 421 4E2 1721 1911 301 U21 2M21 12241 1561 3741 21 191 2042 2101 22 242 I it CAC2.Z-.CA &CC7GC!15CC CA7:==.AA CT0ZCAX: A7CAC-%.TT M41= 1; 1 20 1 30- tMC"CArou AMUIC tGC=.0CT WACCCGAre =Mk=ACACAC. C1OMM=?? UvT?ATC AXOA070.? Ch~i A3CA CTATUOUT AT=CTGXa" 70. 6 G~CA *=CACG4 xakC?~ma A "TC CGACCO GCATW-U.? CC~~NOCA oIW4CTOC4UA 1:c 20 30o 1 40 CV=O.*= CA 1 .CA CC TWCA ACC? I.OCCTO C .11A VA h X, CI60AZc= I s0 CA LCA"; 17CC? CCT= C=O.&CJGC &GC"DOC? to: cG-= CA C CT ?6C TGCC?7T? ?CCOAOCJ.C CDAOTOCCA? SCCCT=C-TG aT=cCT"! DJJ.CJJ.ATTA ATAO.37TC=2? to :2D 260 24C ICC 36: 420 54 61.0 1720 1710 840 9.60 2060 1.140 1320 2360 1620 210 2140 28.^0 35"0 1320 11910 2040 2.100 2160 2220 2250 2340 2400 2411 I 40 1 s0 1 SUBSTITUTE SHEET IPEA/US i m f C w w i PCT'US 92/04354 /03+' .36. The biologically pure.,culture of claim 27, wherein said cell line isVtransfected by a nucleic acid molecule coding for a cytokine. 37. The biologically pure culture of claim 36, wherein said cell line is further transfected by a nucleic acid molecule coding for an HLA molecule. 38. The biologically pure culture of claim 36, wherein said cytokine is an interleukin. 39. The biologically pure culture of claim 38, wherein said interleukin is IL-2. The biologically pure culture of claim 38, wherein said interleukin is IL-4. 41. The biologically pure culture of claim 27, wherein said cell line is transfected by a nucleic acid molecule which codes for an MHC molecule or an HLA molecule. 42. The biologically pure culture of claim 27, wherein said cell line expresses an MHC or HLA molecule which presents a tumor rejection antigen derived from a tumor rejection antigen precursor (TRAP), wherein said TRAP is coded for by a nucleic acid molecule transfected into said cell line. f 43. The biologically pure culture of claim 27, wherein said culture is non-proliferative. 44. The biologically pure culture of claim 27, wherein said cell line is a fibroblast cell line. Transfected bacteria containing the nucleic acid molecule of claim 2. SUBSTITUTE SHEET y I PEA/US W W M M I U W M i L's^' I i CT/uS 92/04354 /0f .46. Mutated virus containing the nucleic acid molecule of claim 2. 47. Expression vector useful in transfecting a cell comprising the isolated nucleic acid molecule of claim 2 operably linked to a promoter. 48. Expression vector useful in transfecting a cell comprising a nucleic acid molecule coding for a tumor rejection antigen which is not a tum- antigen, operably linked to a promoter. 49. Expression vector of claim 47, wherein sa:d is a strong promoter. Expression vector of claim 47, wherein said is a differential promoter. 51. Expression vector useful in transfecting comprising the isolated nucleic acid molecule 7 operably linked to a promoter. 52. Expression vector useful in transfecting comprising the isolated nucleic acid molecule 13 operably linked to a promoter. 53. Expression vector useful in transfecting comprising the isolated nucleic acid molecule 14 operably linked to a promoter. 54. Expression vector useful in transfecting comprising the isolated nucleic acid molecule 18 operably linked to a promoter. Expression vector useful in transfecting comprising the isolated nucleic acid molecule 22 operably linked to a promoter. SUBSTITUTE SHEET IPEA/US promoter promoter a cell of claim a cell of claim a cell of claim a cell of claim cell claim 105 56. The expression vector of claim 47, further comprising a nucleic acid molecule which codes for an MHC or HLA. S57. The expression vector of claim 47, further comprising a nucleic acid molecule which codes for a cytokine. 58. The expression vector of claim 57, wherein said cytokine is an interleukin. 59. The expression vector of claim 58, wherein said interleukin is IL-2. The expression vector of claim 58, wherein said interleukin is IL-4. 61. The expression vector of claim 47, further comprising a bacterial or viral genome or portion thereof. 62. The expression vector of claim 61, wherein said viral genome vaccinia virus DNA and said bacterial genome or portion thereof is BCG DNA. I 63. Expression system useful in transfecting a cell, compiising a first vector containing a nucleic acid molecule which codes for the tumor rejection antigen precursor of claim 1, and (ii) a second vector selected from the group consisting of a vector containing a nucleic acid molecule which codes for an MHC or HLA molecule which presents a tumor rejection antigen derived from said tumor rejection antigen precursor, and a vector containing a nucleic acid molecule which codes for an interleukin. 64. Isolated tumor rejection antigen precursor for a non- 6 tum- antigen encoded by the isolated nucleic acid molecule of claims 1 to 3, 12 to 14 or 22 to 26. 11 j 3 xreso yse sfu ntanfcig el comiiin (i irtvcorcnaiiganuli i 106 The isolated tumor rejection antigen precursor of claim 64 which is a human tumor rejection antigen precursor. 66. Isolated tumor rejection antigen precursor of claim 65, wherein said precursor is mage-l. 67. Isolated tumor rejection antigen precursor of claim 65, wherein said precursor is a precursor for antigen F. 68. Isolated tumor by the nucleic 69. Isolated tumor by the nucleic Isolated tumor by the nucleic 71. Isolated tumor by the nucleic 72. Isolated tumor antigen and is rejection antigen precursor acid molecule of claim 2. rejection antigen precursor acid molecule of claim 12. rejection antigen precursor acid molecule of claim 13. rejection antigen precursor acid molecule of claim 22. coded for coded for coded for coded for rejection antigen which is not a tum' derived from the isolated tumor 0 0 rejection antigen precursor of any of claims 64 to 71. 73. The isolated tumor rejection antigen of claim 72 which is a human tumor rejection antigen. 74. Isolated tumor rejection antigen of claim 72 having the amino acid sequence of SEQ ID NO: 4. Isolated tumor rejection antigen of claim 72, wherein said tumor rejection antigen is antigen E. 76. Isolated tumor rejection antigen of claim 72, wherein said tumor rejection antigen is antigen F. PCT'US 92/04354 /07 77. Vaccine useful in treating a subject afflicted with a cancerous condition .comprising a tumor rejection accwrd,,n, lb aaiin roq antigen precursorVfor n tu. antigon which provokes an immune response when administered to a subject. 78. Vaccine useful in treating a subject afflicted with a cancerous condition comprising a peptide fragment derived from a tumor rejection antigen precursor -fr accordl/ -fo cdarmbq Va nn tum- antigonr., wherein said fragment is larger than the tumor rejection antigen derived from said tumor rejection antigen precursor and smaller than said tumor rejection antigen precursor and which provokes an immune response when administered to a subject. 79. Vaccine of claim 77, wherein said tumor rejection antigen precursor is a human tumor rejection antigen precursor. Vaccine of claim 77 wherein said tumor rejection antigen precursor is mage-l. 81. Vaccine of claim 79, wherein said tumor rejection antigen precursor is antigen F precursor. 82. Vaccine useful in treating a patient with a cancer comprising the tumor rejection antigen of claim 72 which provokes an immune response when administered to a subject. 83. Vaccine of claim 82, wherein said tumor rejection antigen has amino acid sequence of SEQ ID NO: 4. 84. The vaccine of claim 81, wherein said tumor rejection antigen is antigen E. A- SUBSTITUTE SHEET SIPEA/US b PCT. US 92/04354 The vaccine of claim 81, wherein said tumor rejection antigen is antigen F. 86. The vaccine of claim 77, wherein said tumor rejection antigen precursor is the expression product of an expression vector containing a viral genome or portion thereof. 87. Vaccine useful in treating a patient with a cancer *pacteric comprising the transfected agoteNeid of claim 45 and a pharmaceutically acceptable adjuvant. 88. Vaccine useful in treating a cancerous condition comprising the mutated virus of claim 46, and a t pharmacologically acceptable adjuvant. 89. Vaccine useful in treating a subject afflicted with a cancerous condition comprising a complex of a tumor accord",g ?b c/az?, 64L 4 r <,lSd rejection antigenVwhiel- is not a tum- antigen and an HLA molecule. 90. Isolated peptide useful in treating a subject afflicted with a cancerous condition, said peptide having the amino acid of SEQ ID NO: 26. 91. Vaccine useful in treating a subject afflicted with a cancerous condition comprising the isolated cell line of claim 27 and a pharmacologically acceptable adjuvant. 92. Vaccine useful in treating a subject afflicted with a cancerous condition comprising the isolated cell line of claim 37 and a pharmacologically acceptable adjuvant. r 93. Composition of matter useful in treating a cancerous condition comprising a non-proliferative cell line SSUBSTITUTE SHEET IPEA/JS I havil anti a tu and V:T'US 9 2/04354 /'09 ng expressed on its surface a tumor rejection accciq kC/oa;,n 6 gen precursotVfor a non tum antigen specific for mor characteristic of said cancerous condition, a pharmaceutically acceptable carrier. 94. Composition of matter of claim 93, wherein said cell line is a human cell line. Composition of matter of claim 93, wherein said pharmaceutically acceptable carrier is a liposome. 96. Composition of matter useful in treating a cancerous condition comprising a non proliferative cell line having expressed on its surface a tumor rejection acczrdi' Vfo ccuwn 7 2 antigen which is not a tum- antigen specific for a tumor characteristic of said cancerous condition, and a pharmaceutically acceptable carrier. 97. Composition of matter of claim 96, wherein said cell line is a human cell line. 98. Composition of matter of claim 96, wherein said pharmaceutically acceptable carrier is a liposome. 99. Composition of matter useful in treating a cancerous accordMiAIe -t condition, comprising a tumor rejection antigenV car' 7a, Vwnhch is not a tum- antigen or a tumor rejection accotd/h dr/1n antigen precursorVfor a non tum antigen, (ii) an MHC or HLA molecule, and (iii) a pharmaceutically acceptable carrier. 100. Composition of matter of claim 99, wherein said pharmaceutically acceptable carrier is a liposome. 101. Antibody which specifically binds to a tumor rejection accord/'v -focdav 69 antigen precursorv or a non tum antigen. SUBSTITUTE SHEET IPEANUS LD ne fo, tr/ r i u Jun i7>j PCTiJS 92/04354 //0 102. Antibody of claim 101, wherein said antibody is a monoclonal antibody. 103. Antibody of claim 101, wherein said tumor rejection antigen precursor is mage-1. 104. Antibody of claim 103, wherein said antibody is a monoclonal antibody. 105. Antibody of claim 101, wherein said tumor rejection antigen precursor is antigen F precursor. 106. Antibody of claim 105, wherein said antibody is a I monoclonal antibody. S107. Antibody of claim 101, wherein said tumor rejection jlman, -funx rqcfhcbo ant'Ce' antigen precursor is aV+SME precursor. 108. Antibody of claim 107, wherein said antibody is a monoclonal antibody. 109. Antibody of claim 107, wherein said MAGE precursor is mage 1, mage 2, mage 3, mage 4, mage 5, mage 6, mage 7, mage 8, mage 9, mage 10, mage 11, smage I and smage 1I II. 110. Antibody of claim 109, wherein said antibody is a monoclonal antibody. 111. Antibody which specifically binds to a tumor rejection accorc(d- -flvclat, 72 antigen 112. Antibody of claim 111, wherein said antibody is a monoclonal antibody. 113. Antibody of claim 111, wherein said tumor rejection antigen is that set forth in SEQ ID NO: 4. SSUBSTITUTE SHEET IPE AUS lb ecd't PCi/PiO 1 I Jui 19; PC/US 92/0435 1/1 114. Antibody of claim 113, wherein said antibody is a monoclonal antibody. 115. Antibody of claim 111, wherein said tumor rejection antigen is antigen E. 116. Antibody of claim 115, wherein said antibody is a monoclonal antibody. 117. Antibody of claim 111, wherein said tumor rejection antigen is antigen F. l 118. Antibody of claim 117, wherein said antibody is a ii monoclonal antibody. 119. Antibody which specifically binds to a complex of (i) Saccotdt' A cain 72 tumor rejection antigenVwhch is not a tum- antigen and (ii) HLA molecule, but does not bind to or (ii) i alone. 120. The antibody of claim 119, wherein said antibody is a monoclonal antibody. i 121. Method for diagnosing a cancerous condition in a subject, comprising contacting a lymphocyte containing sample of said subject to a cell line transfected with a DNA sequence coding for a tumor rejection antigen precursorVTor a non tum- antigen expressed by cells associated with said cancerous condition, and determining lysis of said transfected cell line by a cytotoxic T cell line specific for a tumor rejection antigen which is not a tum- antigen derived from said tumor rejection antigen precursor, said lysis being indicative of said cancerous condition. SUBSTITUTE SHEET IPE A US LIroi 6 w4 Wi d 4 SCT'US 92,04354 //12 122. Method of claim 121, wherein said tumor rejection human -unfo/- re'echlon cuvbae&, piVcuso# antigen precursor is aVMAGE antigon. 123. Method for determining regression, progression or onset of a cancerous condition comprising monitoring a sample from a patient with said cancerous condition for a parameter selected from the group consisting of aco irP -lq o alda,'n t tumor rejection antigen precursorVfor a non tum- antigen, (ii) tumor rejection antigen and (iii) cytolytic T cells specific for a tumor rejection j accorcdtqfo daim 12 antigen which is not a tum- antigen associated with said car ous condition, wherein amount of said parameter is indicative of progression or regression or onset of said cancerous condition. I 124. Method of claim 123, wherein said sample is a body fluid. 125. Method of claim 123, wherein said sample is a tissue. 126. Method of claim 123, comprising contacting said sample with an antibody which specifically binds with said tumor rejection antigen or tumor rejection antigen precursor. 127. Method of claim 126, wherein said antibody is labelled with a radioactive label or an enzyme. 128, Method of claim 126, wherein said antibody is a jy monoclonal antibody. 129. Method of claim 123, comprising amplifying RNA which codes for said tumor rejection antigen precursor. 130. Method of claim 129, wherein said amplifying comprises carrying out polymerase chain reaction. SUBSTITUTE SHEET SIPEANU PCT/S 92/04354 131. Method of claim 123, comprising contacting said sample with a nucleic acid molecule which specifically hybridizes to a nucleic acid molecule which codes for or expresses said tumor rejection antigen precursor. 132. Method of claim 123, comprising assaying said sample for shed tumor rejection antigen. 133. Method for diagnosing a cancerous condition comprising assaying a sample taken from a subject for a cytolytic aor~di c(lar' 72, T cell specific for a tumor rejection antigenVwhich is not a tum- antigen, presence of said cytolytic T cell being indicative of said cancerous condition. 134. Method for treating a subject afflicted with a cancerous condition, comprising: removing a lymphocyte containing sample from i. said subject, (ii) contacting the lymphocyte containing sample to a cell line transfected with a gene coding for and expressing a gene for a tumor rejection antigen p accor n c/m'nn t j 1 precursorVfor a non tum- antigen expressed by cancer cells associated with said conditions, under conditions favoring production of cytotoxic T cells I against a tumor rejection antigen derived from said tumor rejection antigen precursor, and (iii) introducing said cytotoxic T cells to said r subject in an amount sufficient to lyse said cells. 135. Method for treating a subject afflicted with a cancerous condition, comprising: e er- -c identifying a MAGE geneVexpressed by cancer cells associated with said condition; (ii) identifying an HLA molecule which presents a portion of an expression product of said MAGE gene; I' SUBSTITUTE SHEET IPEA/US £C/Uo 92/04354 (iii) transfecting a host cell having the same HLA molecule as identified in (ii) with said MAGE gene; (iv) culturing said transfected cells to express said MAGE-gene, and; introducing an amount of said cells to said subject sufficient to provoke an immune response against said tumor. 136. Method of claim 135, wherein said immune response comprises a B-cell response. 137. Method of claim 135, wherein said immune response is a T-cell response. 138. Method of claim 136, wherein said B cell response comprises production of antibodies specific to said tumor rejection antigen or tumor rejection antigen precursor. 139. Method of claim 137, wherein said T-cell response comprises generation of cytolytic T-cells specific for cells presenting said tumor rejection antigen. 140. Method of claim 139, further comprising treating said cells to render them non-proliferative. 141. Method for treating a subject with a cancerous condition, comprising: (s herebe rededed) identifying a MAGE gene expressed by said tumor; (ii) transfecting a host cel1 having the same HLA type as said patient with said MAGE gene; (iii) culturing said transfected cells to express said MAGE gene, and; S(iv) introducing an amount of said cells to said SUBSTITUTE SHEET JPEAUS p m PCT/U 92/04'354 subject sufficient to provoke an immune response against said tumor. 142. Method of claim 141, further comprising treating said cells to render them non proliferative. 143. Method for treating a subject with a cancerous condition, comprising administering to said subject an amount of a cell transfected with a nucleic acid sequence which codes for a tumor rejection antigen a C C rK~l g 9a/. n CO precursorVfor a non tum- antigen and (ii) a nucleic acid sequence which codes for an MHC or HLA molecule which presents a tumor rejection antigen which is not a tum antigen derived from said TRAP, wherein said tumor rejection antigen is presented by cells associated with said cancerous condition, sufficient to alleviate said cancerous condition. 144. Method of claim 143, further comprising treating said cell to render it non-proliferative. 145. Method for preparing a biological material useful in treating a subject afflicted with a cancerous condition, comprising: transfecting a host cell with a nucleic acid molecule which codes for or expresses a tumor rejection antigen precursorVfor a non tum antigen; SUBSTITUTE SHEET IIPEAJUS L .JUa1 PCT'US 92/04354 /16 (ii) transfecting said host cell with a nucleic acid molecule which codes for an HLA molecule which presents a tumor rejection antigen which -s not a tum- antigen derived from said tumor rejection antigen precursor on a cell surface, and; (iii) treating said host cells under conditions favoring expression of said nucleic acid molecules, and presentation of said tumor rejection antigen by said human leukocyte antigen. 146. Method of claim 145, further comprising treating said host cells to render them non proliferative following presentation of said tumor rejection antigen. 147. Method of claim 146, further comprising transfecting said host cell with a nucleic acid molecule which codes for or expresses a cytokine. 148. Method of claim 146, wherein said cytokine is an interleukin. 149. Method of claim 146, wherein said human leukocyte antigen is HLA-A1. 150. Method of claim 148, wherein said interleukin is IL- 2. SUBSTITUTE SHEET IPEA/US PC T .IUS 92/04354 /17 151. Method of claim 146, wherein said interleukin is IL- 4. 152. Method for treating a subject afflicted with a cancerous condition comprising administering to said subject an amount of a reagent consisting essentially of non-proliferative cell having expressed on its accordi;/ fDo cla/m 72- surface a tumor rejection antigenVwhich is not a tum- Santigen characteristic of cancerous cells in an amount i sufficient to elicit an immune response thereto. 153. Method for treating a subject afflicted with a cancerous condition comprising administering to said subject an antibody which specifically binds to a accordt~i 7 dcl 72 tumor rejection antigenVwhich is not a tum- antigen expressed on a cancer cell associated with said condition, said antibody being coupled to an Santicancer agent, in an amount sufficient to treat said cancerous condition. 154. Method for treating a subject afflicted with a cancerous condition comprising administering to said subject an antibody which specifically binds to a jaccvrdiha97 v dla/'n 64' tumor rejection antigen precurscrV for a non tum antigen expressed by a cancer cell associated with said condition, said antibody being coupled to an SUBSTITUTE SHEET S IPEAUS PCT'US 92/04354 i anticancer agent, in an amount sufficient to treat said cancerous condition. 155. Method fay treating a subject afflicted with a cancerous condition comprising administering to said subject a biological sample prepared in accordance with claim 142 in an amount sufficient to alleviate said cancerous condition. 156. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 77 in an amount sufficient to prevent onset of said cancerous condition in said subject. 4 157. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 78 in an amount sufficient to prevent onset of said cancerous condition in said subject. 158. Method for preventing onset of a cancerous condition Sin a subject comprising administering an amount of vaccine of claim 82 in an amount sufficient to prevent onset of said cancerous condition in said subject. 159. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 86 in an amount sufficient to prevent onset of said cancerous condition in said subject. SUBSTITUTE SHEET IPEA/US LY hrl. V I id i iv1 1" -CT'us 92/04354 160. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 87 in an amount sufficient to prevent onset of said cancerous condition in said subject. 151. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 88 in an amount sufficient to prevent onset of said cancerous condition in said subject. 162. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 89 in an amount sufficient to prevent onset of said cancerous condition in said subject. 163. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 89 in an amount sufficient to prevent i onset of said cancerous condition in said subject. 164. Method for preventing onset of a cancerous condition in a subject comprising administering an amount of the vaccine of claim 90 in an amount sufficient to prevent onset of said cancerous condition in said subject. SUBSTITUTE SHEET IPE4US i4 P92/04-354 165. Method for treating a subject afflicted with a cancerous condition, comprising: identifying cells from said subject which accgtcOni' Yo cJcvi 6 express a tumor rejection antigen precursorVfor a non tum- antigen and present a tumor rejection antigen which is not a tumr antigen derived from said precursor on their surface; (ii) isolating a sample of said cells; (iii) cultivating said cell, and; (iv) introducing said cells to said subject in an amount sufficient to provoke an immune response against said cells. 166. Method of claim 165, further comprising rendering said cells non proliferative, prior to introducing them to said subject. 1 167. Method for identifying a cytotoxic T cell useful in treating a subject afflicted with a cancerous condition, comprising: accordA-clg o dclio 12- S(i) identifying a tumor rejection antigenVwhich is not a tunm antigen presented by cells associated j with said cancerous condition derived from a tumor rejection antigen precursor for a non tum antigen expressed by said cells, prior to introducing them to -said subject; SUBSTITUTE SHEET IPEA/US PCT.US 92/04354 (21 (ii) contacting a cell presenting said antigen to a cytotoxic T cell, and; (iii) measuring a parameter selected from the group consisting of proliferation of said cytotoxic T cell and (ii) release of a cytotoxic T cell produced factor, wherein increase in said parameter is indicative of said cancerous condition. 168. Method of claim 167, wherein said factor is tumor necrosis factor. 169. Method for following progress of a therapeutic regime designed to alleviate a cancerous condition, comprising: assaying a sample from a subject to determine level of a parameter selected from the group accordt' 9 f Claor 72 consisting of tumor rejection antigenlwhich is not a tum- antigen, (ii) a cytolytic T cell specific for cells presenting said tumor rejection antigen, and (iii) an antibody which specifically binds to said tumor rejection antigen at a first time period; assaying level of the parameter selected in at a second period of time and comparing it to the level determined in as a determination of effect of said therapeutic regime. 170. Method for diagnosing a cancerous condition comprising assaying a sample taken from a subject for expression SUBSTITUTE SHEET V IPEANUS 1' y nch U rt/ i iv PVIL i,. 9C/ZS 92/04354 /22. of a tumor rejection antigen precursorVfor a non tum- antigen molecule, and comparing levels of expression to a normal level, wherein variance there between is indicative of a cancerous condition. 171. Method of claim 164, comprising measuring expression via polymerase chain reaction. 172. Method of claim 123, comprising intradermally administering an amount of a tumor rejection antigen which is not a tum- antigen sufficient to generate a delayed type response in a subject. 'A 'V SUBSTITUTE SHEET !PEA/US
Applications Claiming Priority (9)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US764365 | 1985-08-12 | ||
| US70570291A | 1991-05-23 | 1991-05-23 | |
| US705702 | 1991-05-23 | ||
| US72883891A | 1991-07-09 | 1991-07-09 | |
| US728838 | 1991-07-09 | ||
| US76436591A | 1991-09-23 | 1991-09-23 | |
| US07/807,043 US5342774A (en) | 1991-05-23 | 1991-12-12 | Nucleotide sequence encoding the tumor rejection antigen precursor, MAGE-1 |
| US807043 | 1991-12-12 | ||
| PCT/US1992/004354 WO1992020356A1 (en) | 1991-05-23 | 1992-05-22 | Tumor rejection antigen precursors, tumor rejection antigens and uses thereof |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2158392A AU2158392A (en) | 1992-12-30 |
| AU664560B2 true AU664560B2 (en) | 1995-11-23 |
Family
ID=46202042
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU21583/92A Expired AU664560B2 (en) | 1991-05-23 | 1992-05-22 | Tumor rejection antigen precursors, tumor rejection antigens and uses thereof |
Country Status (4)
| Country | Link |
|---|---|
| KR (1) | KR100261856B1 (en) |
| AU (1) | AU664560B2 (en) |
| IE (1) | IE921661A1 (en) |
| NZ (1) | NZ242875A (en) |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU3435293A (en) * | 1992-01-21 | 1993-08-03 | Ludwig Institute For Cancer Research | Method for determining cytolytic T cell precursors |
-
1992
- 1992-05-22 AU AU21583/92A patent/AU664560B2/en not_active Expired
- 1992-05-22 KR KR1019930703572A patent/KR100261856B1/en not_active Expired - Lifetime
- 1992-05-22 NZ NZ242875A patent/NZ242875A/en not_active IP Right Cessation
- 1992-07-01 IE IE166192A patent/IE921661A1/en not_active IP Right Cessation
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU3435293A (en) * | 1992-01-21 | 1993-08-03 | Ludwig Institute For Cancer Research | Method for determining cytolytic T cell precursors |
Also Published As
| Publication number | Publication date |
|---|---|
| AU2158392A (en) | 1992-12-30 |
| KR100261856B1 (en) | 2000-07-15 |
| IE921661A1 (en) | 1992-12-02 |
| NZ242875A (en) | 1993-09-27 |
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