EP3976556A4 - MICROBIAL QUANTIFICATION - Google Patents
MICROBIAL QUANTIFICATION Download PDFInfo
- Publication number
- EP3976556A4 EP3976556A4 EP20819172.6A EP20819172A EP3976556A4 EP 3976556 A4 EP3976556 A4 EP 3976556A4 EP 20819172 A EP20819172 A EP 20819172A EP 3976556 A4 EP3976556 A4 EP 3976556A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- microbial quantification
- quantification
- microbial
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/24—Earth materials
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N1/00—Microorganisms; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
- C12N1/06—Lysis of microorganisms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
- C12Q1/06—Quantitative determination
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/24—Earth materials
- G01N33/243—Earth materials for determining biological parameters concerning composting, biodegradability or bioavailability
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B35/00—ICT specially adapted for in silico combinatorial libraries of nucleic acids, proteins or peptides
- G16B35/20—Screening of libraries
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H30/00—ICT specially adapted for the handling or processing of medical images
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Physics & Mathematics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biochemistry (AREA)
- Genetics & Genomics (AREA)
- Immunology (AREA)
- Biophysics (AREA)
- Microbiology (AREA)
- General Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Medicinal Chemistry (AREA)
- Medical Informatics (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Environmental & Geological Engineering (AREA)
- General Life Sciences & Earth Sciences (AREA)
- Geology (AREA)
- Remote Sensing (AREA)
- Food Science & Technology (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Library & Information Science (AREA)
- Biomedical Technology (AREA)
- Mycology (AREA)
- Tropical Medicine & Parasitology (AREA)
- Virology (AREA)
- Toxicology (AREA)
- Epidemiology (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201962856429P | 2019-06-03 | 2019-06-03 | |
| PCT/US2020/035961 WO2020247525A1 (en) | 2019-06-03 | 2020-06-03 | Microbial quantitation |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| EP3976556A1 EP3976556A1 (en) | 2022-04-06 |
| EP3976556A4 true EP3976556A4 (en) | 2023-07-05 |
Family
ID=73550377
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP20819172.6A Pending EP3976556A4 (en) | 2019-06-03 | 2020-06-03 | MICROBIAL QUANTIFICATION |
Country Status (4)
| Country | Link |
|---|---|
| US (1) | US11984197B2 (en) |
| EP (1) | EP3976556A4 (en) |
| CA (1) | CA3142568A1 (en) |
| WO (1) | WO2020247525A1 (en) |
Families Citing this family (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3743530A4 (en) * | 2018-01-25 | 2021-11-10 | Trace Genomics, Inc. | SOIL HEALTH INDICATORS USING A MICROBIAL COMPOSITION |
| US11692989B2 (en) * | 2019-07-11 | 2023-07-04 | Locus Solutions Ipco, Llc | Use of soil and other environmental data to recommend customized agronomic programs |
| IL295154A (en) * | 2020-01-28 | 2022-09-01 | Lonza Walkersville Inc | Methods of determining viral titer |
| TR202021472A2 (en) * | 2020-12-23 | 2021-05-21 | Cukurova Ueniversitesi Rektoerluegue | DIGITAL SOIL TEXTURE ANALYZER BASED ON ULTRASES PENETRATION |
| CN116754021B (en) * | 2023-08-22 | 2023-12-08 | 四川省生态环境科学研究院 | Soil quality detection method and system for environmental protection |
| CN119993302B (en) * | 2025-04-16 | 2025-07-04 | 武汉轻工大学 | A microplastic management method for soil remediation |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6570999B1 (en) * | 1998-08-17 | 2003-05-27 | Ag-Chem Equipment Co., Inc. | Soil particle and soil analysis system |
| US20070134652A1 (en) * | 2005-11-09 | 2007-06-14 | Primera Biosystems, Inc. | Multiplexed quantitative detection of pathogens |
| US8246711B2 (en) | 2008-01-28 | 2012-08-21 | John Marler | Fertilizers and methods for using biotic science to feed soils |
| US11047232B2 (en) | 2013-12-31 | 2021-06-29 | Biota Technology, Inc | Microbiome based systems, apparatus and methods for the exploration and production of hydrocarbons |
| CA3086699C (en) * | 2017-12-22 | 2023-09-19 | Trace Genomics, Inc. | Metagenomics for microbiomes |
| EP3743530A4 (en) | 2018-01-25 | 2021-11-10 | Trace Genomics, Inc. | SOIL HEALTH INDICATORS USING A MICROBIAL COMPOSITION |
| US11385215B2 (en) * | 2019-02-25 | 2022-07-12 | Trace Genomics, Inc. | Soil health indicators using microbial functional genes |
-
2020
- 2020-06-03 WO PCT/US2020/035961 patent/WO2020247525A1/en not_active Ceased
- 2020-06-03 EP EP20819172.6A patent/EP3976556A4/en active Pending
- 2020-06-03 CA CA3142568A patent/CA3142568A1/en active Pending
- 2020-06-03 US US16/892,093 patent/US11984197B2/en active Active
Non-Patent Citations (5)
| Title |
|---|
| DIETER M. TOURLOUSSE ET AL: "Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing", NUCLEIC ACIDS RESEARCH, vol. 45, no. 4, 15 December 2016 (2016-12-15), GB, pages 1 - 14, XP055615183, ISSN: 0305-1048, DOI: 10.1093/nar/gkw984 * |
| FRANK STÄMMLER ET AL: "Adjusting microbiome profiles for differences in microbial load by spike-in bacteria", MICROBIOME, vol. 4, no. 1, 21 June 2016 (2016-06-21), XP055652333, DOI: 10.1186/s40168-016-0175-0 * |
| HARDWICK SIMON A. ET AL: "Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis", NATURE COMMUNICATIONS, vol. 9, no. 1, 6 August 2018 (2018-08-06), XP093047900, Retrieved from the Internet <URL:https://www.nature.com/articles/s41467-018-05555-0.pdf> DOI: 10.1038/s41467-018-05555-0 * |
| See also references of WO2020247525A1 * |
| WOLINSKA AGNIESZKA ET AL: "Metagenomic Analysis of Some Potential Nitrogen-Fixing Bacteria in Arable Soils at Different Formation Processes", MICROBIAL ECOLOGY, SPRINGER US, NEW YORK, vol. 73, no. 1, 31 August 2016 (2016-08-31), pages 162 - 176, XP036124987, ISSN: 0095-3628, [retrieved on 20160831], DOI: 10.1007/S00248-016-0837-2 * |
Also Published As
| Publication number | Publication date |
|---|---|
| CA3142568A1 (en) | 2020-12-10 |
| US20200381081A1 (en) | 2020-12-03 |
| US11984197B2 (en) | 2024-05-14 |
| EP3976556A1 (en) | 2022-04-06 |
| WO2020247525A1 (en) | 2020-12-10 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE |
|
| PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
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| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE |
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| 17P | Request for examination filed |
Effective date: 20211209 |
|
| AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR |
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| DAV | Request for validation of the european patent (deleted) | ||
| DAX | Request for extension of the european patent (deleted) | ||
| A4 | Supplementary search report drawn up and despatched |
Effective date: 20230602 |
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| RIC1 | Information provided on ipc code assigned before grant |
Ipc: C12Q 1/6806 20180101ALI20230526BHEP Ipc: C12Q 1/6869 20180101ALI20230526BHEP Ipc: G16H 30/00 20180101ALI20230526BHEP Ipc: G01N 33/24 20060101ALI20230526BHEP Ipc: C12N 1/06 20060101ALI20230526BHEP Ipc: C12Q 1/70 20060101ALI20230526BHEP Ipc: C12Q 1/689 20180101ALI20230526BHEP Ipc: C12P 19/34 20060101ALI20230526BHEP Ipc: C05F 11/00 20060101ALI20230526BHEP Ipc: C05F 3/00 20060101ALI20230526BHEP Ipc: C05D 9/02 20060101ALI20230526BHEP Ipc: C05B 17/00 20060101AFI20230526BHEP |