Biohub

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https://www.biohub.org

czbiohub

evolutionaryscale

cz-biohub

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Our mission is to cure or prevent all disease

At Biohub, we build the technology to help scientists around the world use AI-powered biology to study how cells operate, organize, and work as part of systems to understand why disease happens and how to correct it.

Code of Conduct

This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.

Reporting Security Issues

If you believe you have found a security issue, please responsibly disclose by contacting us at security@chanzuckerberg.com.

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Reason: =====================================================\nAvailable rows: ['A']\nAvailable columns: ['1', '2', '3']\nTotal wells: 3\nFields in A/1: 3\nAllowed FOVs: ['005028', '005029', '005030']\n============================================================\n\nLoading default FOV: A/1/005029\nTraceback (most recent call last):\n File \"/usr/local/lib/python3.13/site-packages/xarray/core/dataset.py\", line 1237, in _construct_dataarray\n variable = self._variables[name]\n ~~~~~~~~~~~~~~~^^^^^^\nKeyError: 'image'\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/usr/local/lib/python3.13/site-packages/xarray/core/dataset.py\", line 1344, in __getitem__\n return self._construct_dataarray(key)\n ~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^\n File \"/usr/local/lib/python3.13/site-packages/xarray/core/dataset.py\", line 1239, in _construct_dataarray\n _, name, variable = _get_virtual_variable(self._variables, name, self.sizes)\n ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File \"/usr/local/lib/python3.13/site-packages/xarray/core/dataset_utils.py\", line 79, in _get_virtual_variable\n raise KeyError(key)\nKeyError: 'image'\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/app/app.py\", line 26, in \n data_xr, pixel_scales = load_default_fov(plate_metadata)\n ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^\n File \"/app/optimize_demo.py\", line 118, in load_default_fov\n data_xr = load_fov_from_plate(\n plate_metadata[\"plate\"],\n ...<3 lines>...\n resolution=0,\n )\n File \"/app/demo_utils.py\", line 171, in load_fov_from_plate\n data_xr = fov_dataset[\"image\"]\n ~~~~~~~~~~~^^^^^^^^^\n File \"/usr/local/lib/python3.13/site-packages/xarray/core/dataset.py\", line 1357, in __getitem__\n raise KeyError(message) from e\nKeyError: \"No variable named 'image'. 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Our mission is to cure or prevent all disease. At Biohub, we build the technology to help scientists around the world use AI-powered biology to study how cells operate, organize, and work as part of systems to understand why disease happens and how to correct it.

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jperera-czbio new activity 7 days ago

biohub/scldm_cd4:Format checkpoint as safetensors

jperera-czbio published a model 11 days ago

biohub/scldm_cd4

jperera-czbio published a model 11 days ago

biohub/DecoderTCR

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Our mission is to cure or prevent all disease

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