JP6450692B2 - 不斉補助基 - Google Patents
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- JP6450692B2 JP6450692B2 JP2016000684A JP2016000684A JP6450692B2 JP 6450692 B2 JP6450692 B2 JP 6450692B2 JP 2016000684 A JP2016000684 A JP 2016000684A JP 2016000684 A JP2016000684 A JP 2016000684A JP 6450692 B2 JP6450692 B2 JP 6450692B2
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- 0 CN(*)[C@@](*)([C@](*)(**)O)N Chemical compound CN(*)[C@@](*)([C@](*)(**)O)N 0.000 description 3
- DATJETPTDKFEEF-RXMQYKEDSA-N N#C[C@@H]1CNCC1 Chemical compound N#C[C@@H]1CNCC1 DATJETPTDKFEEF-RXMQYKEDSA-N 0.000 description 1
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- C07D207/02—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D207/04—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
- C07D207/10—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D207/04—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
- C07D207/10—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D211/06—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
- C07D211/36—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D211/06—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
- C07D211/36—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D211/36—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D211/60—Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
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Description
〔(式中、W1及びW2はそれぞれ独立に-NG5-、-O-、又は-S-であり、G1、G2、G3、G4、及びG5はそれぞれ独立に水素原子、アルキル基、アラルキル基、シクロアルキル基、シクロアルキルアルキル基、ヘテロ環基、ヘテロアリール基、又はアリール基を示すか、あるいはG1、G2、G3、G4、及びG5のうちの2つが一緒になってG6となり飽和、部分不飽和、若しくは不飽和の約20員環までの単環性、多環性、縮合環、若しくは非縮合環の炭化水素環基又はヘテロ原子含有環基を示す(ただしG1、G2、G3、G4、及びG5のうちG6となるのは4つ以下である)〕
特許文献2 : 国際公開WO 2010/064146
より具体的には、上記の4種の化合物のうちFormula Q及びFormula Rで表される化合物を用いて導入された不斉補助基は、強い酸性条件、例えば1% トリフルオロ酢酸(TFA)/ジクロロメタンを用いてカチオンを発生させることにより下記のSN1機構で脱離させることができる。しかしながら、この酸性条件はアシル型の保護基で塩基部位を保護したアデニン塩基(一般的にはアデニン塩基にはアシル型の保護基が導入されている)の脱離(デプリネーション)が生じる条件であることから、この不斉補助基を用いる場合にはアデニン塩基をアミジン型、トリチル型、又はジアシル型などの保護基で保護しなければならないという問題が生じる(下記のスキーム中、Bsは核酸塩基、Meはメチル基、Phはフェニル基を示す)。
本発明はこれらの知見を基にして完成されたものである。
〔式中、R1及びR2はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示し;R3は置換基を有していてもよいアリール基又は置換基を有していてもよいアルキル基を示し;R4及びR5はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示し;Yは-Y1-Y2-を示し、Y1は-C(R6)(R7)-(R6及びR7はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示し、R7はR3が示すアリール基と結合して環を形成していてもよい)又は置換基を有していてもよいo-アリールジイル基(該アリールジイル基のアリール環はR3が示すアリール基と結合して環を形成していてもよい)を示し、Y2は単結合又は-C(R8)(R9)-(R8及びR9はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す)を示す〕で表される化合物又はその塩が提供される。
(式中、R1、R2、R3、R4、R5、及びYは上記と同義であり;R11は水素原子又は水酸基の保護基を示し;R12、R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;R15は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合した固相担体を示し;Bsは核酸塩基を示す)を示し;nは0又は1以上の整数を示す)で表される核酸誘導体が提供される。
(式中、R1、R2、R3、R4、R5、及びYは上記と同義であり;R21は水酸基の保護基を示し;R22は水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;Bsは核酸塩基を示す)で表されるヌクレオチド誘導体が提供される。
(a)下記一般式(V):
(式中、R13、R14、R15、及びnは上記と同義である)
で表される核酸誘導体と、上記一般式(IV)で表されるヌクレオチド誘導体(ただし、R1、R2、R3、R4、R5、及びYは上記と同義であり;R21は水酸基の保護基を示し;R22は水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;Bsは核酸塩基を示す)とを反応させて、上記一般式(III)(ただし、R1、R2、R3、R4、R5、Y、及びnは上記と同義であり;R11は水酸基の保護基を示し;R12、R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;R15は必要に応じてリンカーを介して結合した固相担体を示し;Bsは核酸塩基を示す)で表される核酸誘導体を製造する工程;
(b)上記工程(a)により得られた一般式(III)で表される核酸誘導体からR11で表される水酸基の保護基を除去し、必要に応じて、得られた核酸誘導体と一般式(IV)で表されるヌクレオチド誘導体とを反応させる工程を繰り返す工程;
(c)酸性条件下において一般式(II)で表される不斉補助基を除去して下記一般式(VI):
(式中、R13、R14、R15、及びnは上記と同義である)で表される核酸誘導体を製造する工程;及び
(d)上記工程(c)で得られた核酸誘導体のリン原子を修飾した後、必要に応じて保護基を脱離する工程
を含む方法が提供される。
また、工程(d)におけるリン原子の修飾としては、Xで表される基(Xは置換基を有していてもよいアルキルチオ基、置換基を有していてもよいアルケニルチオ基、置換基を有していてもよいアルキニルチオ基、置換基を有していてもよいアリールチオ基、チオール基、置換基を有していてもよいアルコキシ基、-BH3、-Se-、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアリール基、置換基を有していてもよいアシル基、又は-N(R116)(R117)(R116及びR117はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、又は置換基を有していてもよいアリール基を示す)で表される基を示す)をリン原子上に導入することができる。
〔式中、R101及びR102はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、置換基を有していてもよいアリール基を示し;R103はシアノ基、ハロゲン原子、置換基を有していてもよいハロゲン化アルキル基、置換基を有していてもよいハロゲン化アルカノイル基、スルホニル基、置換基を有していてもよいハロゲン化アルキルスルホニル基、又はニトロ基を示し;Zは-Z1-Z2-を示し、Z1は-C(R104)(R105)-(R104及びR105はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す)を示し、Z2は単結合又は-C(R106)(R107)-(R106及びR107はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す)を示す〕で表される化合物又はその塩が提供される。
(式中、R101、R102、R103、及びZは上記と同義であり;R111は水素原子又は水酸基の保護基を示し;R112及びR114はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;R113は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合した固相担体を示し;Bsは核酸塩基を示し;mは1以上の整数を示す)で表される核酸誘導体が提供される。
(式中、R101、R102、R103、及びZは上記と同義であり;R121は水酸基の保護基を示し;R122は水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;Bsは核酸塩基を示す)で表されるヌクレオチド誘導体が提供される。
(a)下記一般式(XIII'):
(式中、R101、R102、R103、及びZは上記と同義であり、R112及びR114はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;R113は必要に応じてリンカーを介して結合した固相担体を示し;pは0又は1以上の整数を示し;Bsは核酸塩基を示す)
で表される核酸誘導体と、上記一般式(XIV)で表されるヌクレオチド誘導体(ただし、R121は水酸基の保護基を示し;R122は水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示す)とを反応させた後に、求電子剤を用いてX(Xはチオール基、-BH3、-Se-を示す)を導入し、R121が示す水酸基の保護基を除去することにより下記一般式(XV):
(式中、R101、R102、R103、及びZは上記と同義であり、R112及びR114はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;R113は必要に応じてリンカーを介して結合した固相担体を示し;pは0又は1以上の整数を示し;Bsは核酸塩基を示す)で表される核酸誘導体を製造し、必要に応じて上記反応を繰り返して一般式(XV)で表される核酸誘導体を製造し;
(b)上記工程(a)により得られた上記一般式(XV)で表される核酸誘導体から塩基性条件下において一般式(XII)で表される不斉補助基を除去して下記一般式(XVII):
(式中、R112、R113、R114、及びpは上記と同義である)で表される核酸誘導体を製造する工程
を含む方法が提供される。
アルキルチオ基、アルケニルチオ基、アルキニルチオ基、及びアリールチオ基のアルキル部分、アルケニル部分、アルキニル部分、及びアリール部分としては上記に説明したアルキル基、アルケニル基、アルキニル基、及びアリール基を用いることができる。
一般式(I)において、R1及びR2はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す。好ましくはR1及びR2はそれぞれ独立に水素原子又はアルキル基を示し、R1及びR2がともに水素原子であることがさらに好ましい。
R4及びR5はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す。好ましくはR4及びR5はそれぞれ独立に水素原子又はアルキル基を示し、R4及びR5がともに水素原子であることがさらに好ましい。
Y2は単結合又は-C(R8)(R9)-を示す。R8及びR9はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、又は置換基を有していてもよいアリール基を示す。Y2は単結合であることが好ましく、この場合、Yは-C(R6)(R7)-を示すか、又は置換基を有していてもよいo-アリールジイル基を示す。
この方法は、背景技術において国際公開WO 2010/064146の反応工程を説明したスキーム中のRoute Bで示したサイクルと同様に行うことができる。
一般式(XI)において、R101及びR102はそれぞれ独立に水素原子、置換基を有していてもよいアルキル基、置換基を有していてもよいアルケニル基、置換基を有していてもよいアルキニル基、置換基を有していてもよいアルコキシ基、置換基を有していてもよいアラルキル基、置換基を有していてもよいアリール基を示す。R101及びR102は水素原子又はアルキル基であることが好ましく、R101及びR102がともに水素原子であることがより好ましい。
この方法は、背景技術において国際公開WO 2010/064146の反応工程を説明したスキーム中のRoute Aで示したサイクルと同様に行うことができる。
1H NMR (300 MHz, CDCl3) δ 8.01 (1H, d, J = 7.8 Hz), 7.81 (1H, t, J = 7.2 Hz), 7.71 (1H, t, J = 7.2 Hz), 7.56 (1H, d, J = 7.8 Hz), 7.52-7.40 (5H, m); 13C NMR (75.5 MHz, CDCl3) δ 167.3, 146.6, 135.8, 133.6, 131.4, 130.7, 129.3, 126.3, 125.7, 123.9, 123.2, 115.8, 79.6.
1H NMR (300 MHz, CDCl3) δ 7.22-7.18 (9H, m), 4.42 (1H, d, J = 11.7 Hz), 4.09 (1H, d, J = 11.7 Hz), 3.53 (1H, d, J = 12.0 Hz), 3.23 (1H, d, J = 12.0 Hz), 1.64 (2H, brs); 13C NMR (75.5 MHz, CDCl3) δ 145.4, 143.1, 140.8, 133.0, 128.2, 128.1, 127.5, 127.0, 125.7, 125.6, 77.3, 64.4, 51.7; ESI TOF-MS m/z Calcd for C15H16NO [M+H]+ 226.12, found 226.15.
1H NMR (300 MHz, CD3OD) δ 7.53 (2H, d, J = 6.9 Hz), 7.34 (2H, t, J = 6.9 Hz), 7.25 (1H, d, J = 6.9 Hz), 4.20-3.88 (1H, m), 3.88-3.71 (1H, m), 3.42-3.18 (1H, m), 3.08-2.93 (1H, m), 2.13-1.77 (3H, m), 1.58-1.47 (1H, m), 1.46 (9H, s); 13C NMR (75.5 MHz, CD3OD) δ 157.2, 147.5, 129.2, 128.1, 126.3, 81.0, 79.5, 72.4, 37.8, 28.7, 22.3.
1H NMR (300 MHz, CD3OD) δ 7.53-7.46 (2H, m), 7.37-7.29 (2H, m), 7.26-7.18 (1H, m), 3.08-2.99 (1H, m), 2.93-2.85 (1H, m), 2.81-2.72 (1H, m), 2.68-2.56 (1H, m), 2.13-1.80 (3H, m), 1.61-1.51 (1H, m); 13C NMR (75.5 MHz, CD3OD) δ 148.7, 129.2, 127.9, 125.8, 71.8, 57.4, 46.3, 37.2, 23.4; ESI TOF-MS m/z Calcd for C11H16NO [M+H]+ 178.12, found 178.14.
1H NMR (300 MHz, CDCl3) δ 7.52-7.28 (5H, m), 3.80-3.54 (4H, m), 2.42-2.10 (2H, m), 1.93 (1H, brs), 1.48 (9H, s).
1H NMR (300 MHz, CDCl3) δ 7.52-7.46 (2H, m), 7.41-7.24 (3H, m), 3.34 (1H, dt, J = 10.8, 7.8 Hz), 3.20-3.09 (2H, m), 3.03 (1H, d, J = 12.0 Hz), 2.27 (1H, ddd, J = 13.4, 9.3, 7.5 Hz), 2.18-2.06 (1H, m), 1.95 (1H, brs); 13C NMR (75.5 MHz, CD3OD) δ 146.0, 129.2, 128.0, 126.4, 83.1, 61.9, 46.8, 42.9; ESI TOF-MS m/z Calcd for C10H14NO [M+H]+ 164.11, found 164.13.
1H NMR (300 MHz, CDCl3) δ 4.64 (1H, q, J = 4.5 Hz),3.87-3.62 (3H, m), 3.47-3.31 (1H, m), 3.15-2.99 (1H, m), 2.46 (1H, brs), 1.47 (9H, s); ESI TOF-MS m/z Calcd for C10H14NO [M+H]+ 164.11, found 164.13.
1H NMR (300 MHz, CD3OD) δ 4.49 (1H, dt, J = 6.0, 3.6 Hz), 3.39 (1H, dd, J = 11.9, 8.1 Hz), 3.08 (1H, dd, 12.3, 5.4 Hz), 3.00 (1H, dd, J = 11.9, 5.7 Hz), 2.92-2.85 (1H, m), 2.80 (1H, dd, J = 12.3, 3.6 Hz); 13C NMR (100 MHz, CD3OD) δ 121.7, 77.5, 55.5, 50.8, 39.1; ESI TOF-MS m/z Calcd for C5H9N2O [M+H]+ 113.07, found 113.07.
化合物2をキラルカラムで光学分割することで、化合物2a及び2bを得た。
化合物8をキラルカラムで光学分割することで、化合物8a及び8bを得た。
文献(Tetrahedron, 2008, 64, 2456-2464.)に従い、1−ベンジルピペリジン−4−オンより化合物12を合成した。
化合物12をキラルカラムで光学分割することで、化合物12a及び12bを得た。
(a)酸除去型不斉補助基を用いるX-ホスホネートDNAの固相合成の基本手順(一般式 I)
HCP若しくはCPGにサクシニルリンカー若しくはオキザリルリンカーを介して結合した5'-O-(DMTr)ヌクレオシド(0.5μmol)を3%ジクロロ酢酸/ジクロロメタン溶液で処理し、5'-DMTr基を除去し、ジクロロメタンで洗浄し、真空下で乾燥する。鎖長延長反応は以下の(a)、(b)の工程を繰り返し行なうことで達成する。(a)縮合反応(5分)は、事前に活性化した対応するモノマー溶液をアルゴン雰囲気下で行なう。縮合後、固相担体を脱水アセトニトリルと脱水ジクロロメタンで洗浄する。(b) 5'-O-DMTrと不斉補助基の除去は3%ジクロロメタン/(ジクロロメタン−トリエチルシラン(体積比で1:1))溶液で処理することで同時に行い、続いてジクロロメタン及び脱水アセトニトリルで洗浄する。鎖長延長後、樹脂上にできたオリゴヌクレオシドHホスホネートはXホスホネートDNAに下に示す方法で変換する。
上記の方法で得られた、HCP若しくはCPGにサクシニルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、10重量%S8/(二琉化炭素−ピリジン−トリエチルアミン)溶液(体積比35:35:1)に室温で3時間処理し、続いて二硫化炭素、ピリジン、アセトニトリルで洗浄する。樹脂を25%アンモニア水で室温12時間処理し、水で洗浄する。水溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したホスホロチオエートDNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートに対し、脱水ジメチルホルムアミド、N,O-ビス(トリメチルシリル)アセトアミド、ボランジメチルスルフィドを加える。15分後、樹脂をジメチルホルムアミド、アセトニトリル、メタノールの順に洗浄する。樹脂をアンモニア/メタノール溶液で室温12時間処理し、メタノールで洗浄する。メタノール溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したボラノホスフェートDNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、0.1Mトリメチルシリルクロリド/(ピリジン:1−メチル−2−ピロリドン(体積比1:9))溶液で室温10分間、ガス状のホルムアルデヒドで室温30分間処理し、次に1−メチル−2−ピロリドン、アセトニトリルで洗浄する。樹脂を25%アンモニア水で室温12時間処理し、水で洗浄する。水溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したヒドロキシメチルホスホネートDNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素-1、4-ジオキサン(体積比4:1)の飽和アンモニア溶液に0℃で30分間処理し、1、4-ジオキサンで洗浄する。有機溶媒を集め、減圧下濃縮乾燥し、25%アンモニア水で室温12時間処理し、水で洗浄する。水溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したホスホロアミデートDNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素−プロピルアミン(体積比9:1)溶液に室温で1時間処理し、メタノールで洗浄する。有機溶媒を集め、減圧下濃縮乾燥し、25%アンモニア水で室温12時間処理し、水で洗浄する。水溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したN−プロピルホスホロアミデートDNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素-2-ジメチルアニモエチルアミン(体積比9:1)溶液に室温で1時間処理し、アセトニトリルで洗浄する。有機溶媒を集め、減圧下濃縮乾燥し、25%アンモニア水で室温12時間処理し、水で洗浄する。水溶液を集め、減圧下濃縮し、残渣を逆相HPLCで精製し、立体を制御したN-[(2-ジメチルアミノ)エチル]ホスホロアミデートDNAを得る。
(a)酸除去型不斉補助基を用いるX-ホスホネートRNAの固相合成の基本手順(一般式 I)
HCP若しくはCPGにサクシニルリンカー若しくはオキザリルリンカーを介して結合した5'-O-(DMTr)ヌクレオシド(0.5μmol)を3%ジクロロ酢酸/ジクロロメタン溶液で処理し、5'-DMTr基を除去し、ジクロロメタンで洗浄し、真空下で乾燥する。鎖長延長反応は以下の(a)、(b)の工程を繰り返し行なうことで達成する。(a)縮合反応(15分)は、事前に活性化した対応するモノマー溶液*をアルゴン雰囲気下で行なう。縮合後、固相担体を脱水アセトニトリルと脱水ジクロロメタンで洗浄する。(b) 5'-O-DMTrと不斉補助基の除去は3%ジクロロメタン/(ジクロロメタン−トリエチルシラン(体積比で1:1))溶液で処理することで同時に行い、続いてジクロロメタン及び脱水アセトニトリルで洗浄する。鎖長延長後、樹脂上にできたオリゴヌクレオシドHホスホネートはXホスホネートRNAに下に示す方法で変換する。
上記の方法で得られた、HCP若しくはCPGにサクシニルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、10重量%S8/(二琉化炭素−ピリジン−トリエチルアミン)溶液(体積比35:35:1)に室温で3時間処理し、続いて二硫化炭素、ピリジン、エタノールで洗浄する。次に樹脂を25%アンモニア水−エタノール溶液(体積比3:1)で室温2時間処理し、樹脂をフィルターでろ別する。ろ液を25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたホスホロチオエートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したホスホロチオエートRNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートに対し、脱水ジメチルホルムアミド、N,O-ビス(トリメチルシリル)アセトアミド、ボランジメチルスルフィドを加える。15分後、樹脂をジメチルホルムアミド、アセトニトリル、エタノールの順に洗浄する。次に樹脂を25%アンモニア水−エタノール溶液(体積比3:1)で室温2時間処理し、樹脂をフィルターでろ別する。ろ液を25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたボラノホスフェートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したボラノホスフェートRNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、0.1Mトリメチルシリルクロリド/(ピリジン:1−メチル−2−ピロリドン(体積比1:9))溶液で室温10分間、ガス状のホルムアルデヒドで室温30分間処理し、次に1−メチル−2−ピロリドン、エタノールで洗浄する。次に樹脂を25%アンモニア水−エタノール溶液(体積比3:1)で室温2時間処理し、樹脂をフィルターでろ別する。ろ液を25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたヒドロキシメチルホスホネートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したヒドロキシメチルホスホネートRNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素-1、4-ジオキサン(体積比4:1)の飽和アンモニア溶液に0℃で30分間処理し、1、4-ジオキサンで洗浄する。有機溶媒を集め、減圧下濃縮乾燥する。25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたホスホロアミデートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したホスホロアミデートRNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素−プロピルアミン(体積比9:1)溶液に室温で1時間処理し、メタノールで洗浄する。有機溶媒を集め、減圧下濃縮乾燥する。25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたN−プロピルホスホロアミデートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したN−プロピルホスホロアミデートRNAを得る。
上記の方法で得られた、HCP若しくはCPGにオキザリルリンカーを介して結合したオリゴヌクレオシドHホスホネートを、四塩化炭素-2-ジメチルアニモエチルアミン(体積比9:1)溶液に室温で1時間処理し、アセトニトリルで洗浄する。有機溶媒を集め、減圧下濃縮乾燥する。25%アンモニア水−エタノール溶液(体積比3:1)で希釈し、フラスコ内に密閉し、室温で12時間処理する。溶液を減圧下濃縮し、残渣を逆相HPLCで精製する。目的とする2'位がTBS基で保護されたN-[(2-ジメチルアミノ)エチル]ホスホロアミデートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したN-[(2-ジメチルアミノ)エチル]ホスホロアミデートRNAを得る。
(a)塩基除去型不斉補助基を用いるX-ホスホネートDNAの固相合成の基本手順(一般式 XI)
HCP若しくはCPGにサクシニルリンカー若しくはオキザリルリンカーを介して結合した5'-O-(DMTr)ヌクレオシド(0.5μmol)を合成に用いる。鎖長延長反応はTable1に記す工程を繰返し行なうことで達成する。鎖長延長後、不斉補助基は無水10%DBU/アセトニトリル溶液を用い室温15分で除去し、アセトニトリルで洗浄する。次に5'-O-DMTr基を3%ジクロロ酢酸/ジクロロメタン溶液で除去し、ジクロロメタンで洗浄する。HCP若しくはCPG上のオリゴマーをOリングの付いたスクリューキャップ式のエッペンドルフチューブに移す。0.5マイクロモルのオリゴヌクレオチドを含む固相担体を25%のアンモニア水(1mL)に懸濁させ、55℃で12時間処理し、核酸塩基部位の保護基を除去し、同時にHCP若しくはCPGからオリゴマーを遊離させる。遠心分離後、上清を丸底フラスコへ移し、固相担体を水(0.5mLで2回)で洗浄する。遠心分離後、集めた上清を減圧下乾燥する。残渣を水(1mL)で希釈し、Sep-Pak PLUS tC18にロードし、水で平衡化する。まず塩を除くために水(20mL)を流し、次に脱塩済みの立体を制御したXホスホネートDNAを50%アセトニトリル水溶液(10mL)で溶出させ、逆相UPLCとMALDI-TOF MSで分析する。
(a)酸除去型不斉補助基を用いるX-ホスホネートRNAの固相合成の基本手順(一般式 XI)
HCP若しくはCPGにサクシニルリンカー若しくはオキザリルリンカーを介して結合した5'-O-(DMTr)リボヌクレオシド(0.5μmol)を合成に用いる。鎖長延長反応はTable2に記す工程を繰返し行なうことで達成する。鎖長延長後、不斉補助基は無水10%DBU/アセトニトリル溶液を用い室温15分で除去し、アセトニトリルで洗浄する。次に5'-O-DMTr基を3%ジクロロ酢酸/ジクロロメタン溶液で除去し、ジクロロメタンで洗浄する。HCP若しくはCPG上のオリゴマーをOリングの付いたスクリューキャップ式のエッペンドルフチューブに移す。0.5マイクロモルのオリゴヌクレオチドを含む固相担体を25%のアンモニア水−エタノール混合液(体積比3:1、1mL)に懸濁させ、室温で48時間処理し、核酸塩基部位の保護基を除去し、同時にHCP若しくはCPGからオリゴマーを遊離させる。遠心分離後、上清を丸底フラスコへ移し、固相担体を水(0.5mLで2回)で洗浄する。遠心分離後、集めた上清を減圧下乾燥し、残渣を逆相HPLCで精製する。2'位をTBS基で保護したXホスホネートRNAを含むフラクションを集め、凍結乾燥する。残渣を1モル濃度テトラブチルアンモニウムフルオリドの脱水テトラヒドロフラン溶液を用い室温で24時間処理する。0.05モル濃度のトリエチルアンモニウムアセテートバッファー(pH6.9)を加え、テトラヒドロフランを濃縮除去する。残渣をSep-Pak PLUS tC18で脱塩し、逆相HPLCで精製し、立体を制御したXホスホネートRNAを得る。
Claims (5)
- 不斉補助基を含む核酸誘導体であって,
前記不斉補助基が、下記の一般式(II)で示され,前記不斉補助基の酸素原子(−O−)を介して,前記核酸誘導体のリン原子と結合するものである核酸誘導体。
(一般式(II)における波線は、前記核酸誘導体のリン原子と、前記不斉補助基の酸素原子(−O−)との結合部位を示し、
R1及びR2はそれぞれ独立に水素原子を示し;
R3は無置換のフェニル基を示し;
R4及びR5はそれぞれ独立に水素原子を示し:
Yは−Y1−Y2−を示し、Y1は−C(R6)(R7)−(R6及びR7はそれぞれ独立に水素原子を示す。)か、又はY1は無置換のo−フェニレン基を示し、Y2は単結合を示す。) - 下記の一般式(III):
〔R1及びR2はそれぞれ独立に水素原子を示し;
R3は無置換のフェニル基を示し;
R4及びR5はそれぞれ独立に水素原子を示し;
Yは−Y1−Y2−を示し、Y1は−C(R6)(R7)−(R6及びR7はそれぞれ独立に水素原子を示す)か、又はY1は無置換のo−フェニレン基を示し、Y2は単結合を示し;
R11は水素原子又は水酸基の保護基を示し;
R12、R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;
R15は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合した固相担体を示し;
Bsは核酸塩基を示し;
nは0又は1以上の整数を示す。〕で表される核酸合成用前駆体。 - 核酸誘導体の製造方法であって、下記の工程:
(a)下記一般式(V):
〔R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;
R15は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合してもよい固相担体を示し;
nは0又は1以上の整数を示す〕で表される核酸誘導体と、下記一般式(IV)
〔R1及びR2はそれぞれ独立に水素原子を示し;
R3は無置換のフェニル基を示し;
R4及びR5はそれぞれ独立に水素原子を示し;
Yは−Y1−Y2−を示し、Y1は−C(R6)(R7)−(R6及びR7はそれぞれ独立に水素原子を示す。)か、又はY1は無置換のo−フェニレン基を示し、Y2は単結合を示し;
R21は水酸基の保護基を示し;
R22は水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;
Bsは核酸塩基を示す。〕で表されるヌクレオチド誘導体とを反応させて、下記一般式(III)
〔R1及びR2はそれぞれ独立に水素原子を示し;
R3は無置換のフェニル基を示し;
R4及びR5はそれぞれ独立に水素原子を示し;
Yは−Y1−Y2−を示し、Y1は−C(R6)(R7)−(R6及びR7はそれぞれ独立に水素原子を示す。)か、又はY1は無置換のo−フェニレン基を示し、Y2は単結合を示し;
R11は水酸基の保護基を示し;
R12、R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;
R15は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合した固相担体を示し;
Bsは核酸塩基を示す。〕で表される核酸誘導体を製造する工程;
(b)上記工程(a)により得られた一般式(III)で表される核酸誘導体からR11で表される水酸基の保護基を除去し、得られた核酸誘導体と一般式(IV)で表されるヌクレオチド誘導体とを反応させる工程;
(c)酸性条件下において一般式(II):
〔R1及びR2はそれぞれ独立に水素原子を示し;
R3は無置換のフェニル基を示し;
R4及びR5はそれぞれ独立に水素原子を示し;
Yは−Y1−Y2−を示し、Y1は−C(R6)(R7)−(R6及びR7はそれぞれ独立に水素原を示す。)か、又はY1は無置換のo−フェニレン基を示し、Y2は単結合を示す。〕で表される不斉補助基を除去して下記一般式(VI):
〔R13、及びR14はそれぞれ独立に水素原子、アルコキシ基、フッ素原子、又は保護された水酸基を示し;
R15は水素原子、水酸基の保護基、又は必要に応じてリンカーを介して結合してもよい固相担体を示し;
nは0又は1以上の整数を示す。〕で表される核酸誘導体を製造する工程を含む方法。 - 工程(c)における酸性条件は、ジクロロメタン中に3%ジクロロ酢酸(DCA)を含ませることで達成される、請求項4に記載の方法。
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2011
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| DK2620428T3 (da) | 2019-07-01 |
| US10428019B2 (en) | 2019-10-01 |
| EP2620428B1 (en) | 2019-05-22 |
| US20130178612A1 (en) | 2013-07-11 |
| EP2620428A1 (en) | 2013-07-31 |
| JP5868324B2 (ja) | 2016-02-24 |
| EP2620428A4 (en) | 2014-05-21 |
| WO2012039448A1 (ja) | 2012-03-29 |
| JP2019006793A (ja) | 2019-01-17 |
| JPWO2012039448A1 (ja) | 2014-02-03 |
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